HHSEARCH alignment of GI: 254780259 and SCOP domain: d1vqos1

Alignment
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.92  E-value=5.5e-26  Score=168.19  Aligned_cols=79  Identities=30%  Similarity=0.393  Sum_probs=71.7

Q ss_pred             HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r    6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM   84 (110)
Q Consensus         6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~   84 (110)
                      .||+|++|++||||+.+.| +|+|+|.|+++|||+|||+|||.+|+|+|.+|||++.+++                    
T Consensus         1 ~y~iI~~P~iTEKs~~~~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~--------------------   60 (81)
T d1vqos1           1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG--------------------   60 (81)
T ss_dssp             CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS--------------------
T ss_pred             CCCEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC--------------------
T ss_conf             963110031079889988868779999768589899999999984993018997673899--------------------


Q ss_pred             CCCCCCCEEEEEECCCCCE-ECCCCCC
Q ss_conf             4345881389999589973-1332489
Q gi|254780259|r   85 YVSRKDVKRAFVTLAKGYS-IDISAGV  110 (110)
Q Consensus        85 ~~k~~~~KKAiVtL~~G~~-I~~~~gi  110 (110)
                            +|||||+|++|++ +|+++.|
T Consensus        61 ------~KkA~V~L~~~~~a~dia~ki   81 (81)
T d1vqos1          61 ------EKKAVVRLSEDDDAQEVASRI   81 (81)
T ss_dssp             ------SEEEEEEECTTSCHHHHHTTC
T ss_pred             ------CEEEEEEECCCCCHHHHHHCC
T ss_conf             ------578999948999689997359


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]