Query gi|254780259|ref|YP_003064672.1| 50S ribosomal protein L23 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 110 No_of_seqs 117 out of 1550 Neff 5.4 Searched_HMMs 13730 Date Tue May 24 06:51:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780259.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2zjrq1 d.12.1.1 (Q:2-94) Ribo 100.0 3.3E-35 2.4E-39 221.3 7.6 92 5-109 1-92 (93) 2 d2j01x1 d.12.1.1 (X:3-95) Ribo 100.0 3.6E-35 2.6E-39 221.1 -1.4 92 6-110 2-93 (93) 3 d2qamt1 d.12.1.1 (T:1-93) Ribo 100.0 6.8E-33 5E-37 208.0 2.5 91 1-104 2-93 (93) 4 d1vqos1 d.12.1.1 (S:1-81) Ribo 99.9 5.5E-26 4E-30 168.2 8.1 79 6-110 1-81 (81) 5 d1yqba1 d.15.1.1 (A:15-98) Ubi 57.8 6.2 0.00045 18.1 4.3 40 25-65 16-55 (84) 6 d1j8ca_ d.15.1.1 (A:) Ubiquiti 53.9 7.2 0.00053 17.7 5.0 40 25-65 41-80 (103) 7 d2bwfa1 d.15.1.1 (A:2-74) DSK2 53.1 7.5 0.00054 17.7 4.1 40 25-65 10-49 (73) 8 d1v86a_ d.15.1.1 (A:) hypothet 51.7 7.6 0.00055 17.6 3.7 35 25-59 26-60 (95) 9 d1v5oa_ d.15.1.1 (A:) 1700011n 45.0 10 0.00073 16.9 3.5 40 25-65 21-60 (102) 10 d1zkha1 d.15.1.1 (A:1-86) Spli 44.3 4.3 0.00032 19.0 1.5 52 12-64 8-59 (86) 11 d1ogwa_ d.15.1.1 (A:) Ubiquiti 41.9 11 0.00082 16.6 4.1 42 24-66 9-50 (76) 12 d1v2ya_ d.15.1.1 (A:) Ubiquiti 35.3 11 0.00084 16.6 2.5 33 24-56 16-48 (105) 13 d1wx8a1 d.15.1.1 (A:8-90) 4931 33.8 15 0.0011 15.9 3.7 39 25-64 19-57 (83) 14 d2cqga1 d.58.7.1 (A:96-185) TA 31.5 17 0.0012 15.6 6.0 34 25-60 9-42 (90) 15 d1z2ma2 d.15.1.1 (A:79-154) In 30.0 18 0.0013 15.5 4.8 41 24-65 12-52 (76) 16 d1bt0a_ d.15.1.1 (A:) Rub1 {Mo 29.8 18 0.0013 15.5 4.1 41 24-65 9-49 (73) 17 d1ywxa1 d.12.1.3 (A:1-102) Rib 28.8 7.3 0.00053 17.7 0.6 47 15-61 6-55 (102) 18 d2g1da1 d.12.1.3 (A:1-98) Ribo 28.2 4.3 0.00031 19.0 -0.7 45 14-58 5-53 (98) 19 d2v94a1 d.12.1.3 (A:1-93) Ribo 23.7 15 0.0011 15.9 1.4 43 18-60 9-55 (93) 20 d1xn9a_ d.12.1.3 (A:) Ribosoma 23.3 9.3 0.00067 17.1 0.3 47 15-61 6-55 (101) 21 d1fxla1 d.58.7.1 (A:37-118) Hu 22.0 25 0.0018 14.6 5.1 33 26-60 4-36 (82) 22 d1wjna_ d.15.1.1 (A:) Tubulin- 21.0 26 0.0019 14.5 2.3 37 23-59 20-56 (97) 23 d1fxla2 d.58.7.1 (A:119-203) H 20.9 26 0.0019 14.5 3.4 38 21-60 3-40 (85) No 1 >d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Probab=100.00 E-value=3.3e-35 Score=221.34 Aligned_cols=92 Identities=38% Similarity=0.554 Sum_probs=86.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC Q ss_conf 57867600320799888864890999988878988999999999687433789985189633311224664432234544 Q gi|254780259|r 5 RFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110) Q Consensus 5 ~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110) .|||+|++|++||||+.+.|+|+|+|.|+++|||+|||+|||++|+|+|.+|||+|.+||.||++++ T Consensus 1 ~~ydvi~~P~iTEKs~~~~e~n~y~F~V~~~atK~~Ik~ave~lf~VkV~~Vnt~~~~gK~kr~~~~------------- 67 (93) T d2zjrq1 1 SHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRF------------- 67 (93) T ss_dssp CCSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSC------------- T ss_pred CCCCEEEECCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCEEECCC------------- T ss_conf 9633886032088787777799799998087898999999999819875899989817972377994------------- Q ss_pred CCCCCCCEEEEEECCCCCEECCCCC Q ss_conf 4345881389999589973133248 Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSIDISAG 109 (110) Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I~~~~g 109 (110) .|++++||||||||++|++||||+| T Consensus 68 ~g~~~~~KKAiVtL~~g~~I~~~~g 92 (93) T d2zjrq1 68 IGQRNDRKKAIVRLAEGQSIEALAG 92 (93) T ss_dssp CCCCCCBEEEEEECCSSCCCSSTTT T ss_pred CEECCCCEEEEEECCCCCCCCCCCC T ss_conf 3403897899999689694031489 No 2 >d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Probab=99.98 E-value=3.6e-35 Score=221.10 Aligned_cols=92 Identities=43% Similarity=0.593 Sum_probs=86.5 Q ss_pred HHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCC Q ss_conf 78676003207998888648909999888789889999999996874337899851896333112246644322345444 Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMY 85 (110) Q Consensus 6 ~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~ 85 (110) .||+|++|++||||+.+.|+|+|+|.|+++|||+|||+|||++|+|+|.+|||+|++||.||++++ . T Consensus 2 aydvi~~PiiTEKs~~l~e~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~-------------~ 68 (93) T d2j01x1 2 AYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY-------------L 68 (93) T ss_dssp CSTTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCC-------------C T ss_pred CHHEEECCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCC-------------C T ss_conf 313653252188676667689699998087898999999999809971699989847960576884-------------4 Q ss_pred CCCCCCEEEEEECCCCCEECCCCCC Q ss_conf 3458813899995899731332489 Q gi|254780259|r 86 VSRKDVKRAFVTLAKGYSIDISAGV 110 (110) Q Consensus 86 ~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110) |++++||||||||++|++||||+|| T Consensus 69 g~~~~~KKA~V~L~~g~~I~~~~g~ 93 (93) T d2j01x1 69 GKRPDRKKAIVQVAPGQKIEALEGL 93 (93) T ss_dssp SCCCCBCCBCCSTTTCCSSSSTTC- T ss_pred CCCCCCEEEEEECCCCCEECCCCCC T ss_conf 2458988999993896980365798 No 3 >d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Probab=99.97 E-value=6.8e-33 Score=207.98 Aligned_cols=91 Identities=41% Similarity=0.592 Sum_probs=84.3 Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322 Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110) Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110) |+++++||+|++|++||||+.+.| .|+|+|.|+++|||+|||+|||++|+|+|.+|||+|++||.+|+++ T Consensus 2 ~~~~~~~~ii~~PviTEKs~~~~e~~n~ytF~V~~~AtK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~--------- 72 (93) T d2qamt1 2 IREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ--------- 72 (93) T ss_dssp CSCTTTCCCEEEECCCHHHHTHHHHSSCCCEEECSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCEECSTT--------- T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECC--------- T ss_conf 76679998884261688889867639989999899899999999999982996229988885794367588--------- Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEE Q ss_conf 3454443458813899995899731 Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGYSI 104 (110) Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~~I 104 (110) ..|++++||||||||++|++| T Consensus 73 ----~~g~~~~~KKAiVtL~~g~~I 93 (93) T d2qamt1 73 ----RIGRRSDWKKAYVTLKEGQNL 93 (93) T ss_dssp ----CCEECCCEEECCCCCSSCCCC T ss_pred ----CCCCCCCCEEEEEECCCCCCC T ss_conf ----440248978999993897869 No 4 >d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=99.92 E-value=5.5e-26 Score=168.19 Aligned_cols=79 Identities=30% Similarity=0.393 Sum_probs=71.7 Q ss_pred HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC Q ss_conf 7867600320799888864-890999988878988999999999687433789985189633311224664432234544 Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110) Q Consensus 6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110) .||+|++|++||||+.+.| +|+|+|.|+++|||+|||+|||.+|+|+|.+|||++.+++ T Consensus 1 ~y~iI~~P~iTEKs~~~~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~-------------------- 60 (81) T d1vqos1 1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG-------------------- 60 (81) T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-------------------- T ss_pred CCCEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC-------------------- T ss_conf 963110031079889988868779999768589899999999984993018997673899-------------------- Q ss_pred CCCCCCCEEEEEECCCCCE-ECCCCCC Q ss_conf 4345881389999589973-1332489 Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYS-IDISAGV 110 (110) Q Consensus 85 ~~k~~~~KKAiVtL~~G~~-I~~~~gi 110 (110) +|||||+|++|++ +|+++.| T Consensus 61 ------~KkA~V~L~~~~~a~dia~ki 81 (81) T d1vqos1 61 ------EKKAVVRLSEDDDAQEVASRI 81 (81) T ss_dssp ------SEEEEEEECTTSCHHHHHTTC T ss_pred ------CEEEEEEECCCCCHHHHHHCC T ss_conf ------578999948999689997359 No 5 >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Probab=57.81 E-value=6.2 Score=18.11 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=34.0 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE Q ss_conf 89099998887898899999999968743378998518963 Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110) Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110) .+++.|.|+++.+=.++|+.|+..+++.+...+.+ ..|+. T Consensus 16 ~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~Gk~ 55 (84) T d1yqba1 16 KDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGKI 55 (84) T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEE T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHEEEE-EEEEE T ss_conf 97599998998909999999899879590447888-75000 No 6 >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Probab=53.92 E-value=7.2 Score=17.73 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.5 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE Q ss_conf 89099998887898899999999968743378998518963 Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110) Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110) ..++.|.|+++.|=.++|+.|+..+++.+...+. ...|+. T Consensus 41 ~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrL-i~~Gk~ 80 (103) T d1j8ca_ 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVL-IFAGKI 80 (103) T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEE-EETTEE T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EEEEEC T ss_conf 9538999899892999999999998919779101-333002 No 7 >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=53.12 E-value=7.5 Score=17.66 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=33.3 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE Q ss_conf 89099998887898899999999968743378998518963 Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110) Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110) .+.|.+.|+++.|=.++|+.++..+|+.+...+- ...|+. T Consensus 10 ~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrL-i~~Gk~ 49 (73) T d2bwfa1 10 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRL-IYSGKI 49 (73) T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEE T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCEE T ss_conf 9589999899892999999999988929579198-889859 No 8 >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Probab=51.65 E-value=7.6 Score=17.62 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=30.5 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 89099998887898899999999968743378998 Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110) Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110) ...|.+.|++++|=.++|+.|+...+|.+.....+ T Consensus 26 ~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li 60 (95) T d1v86a_ 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95) T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE T ss_conf 99999998999939999999998767796377888 No 9 >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Probab=44.98 E-value=10 Score=16.90 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=32.8 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE Q ss_conf 89099998887898899999999968743378998518963 Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110) Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110) ...|.++|+++++=.++|..||...++.+..-+ +...|+. T Consensus 21 ~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~-Li~~Gk~ 60 (102) T d1v5oa_ 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQL 60 (102) T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEE T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEE-EEECCEE T ss_conf 988999989936399999999998688853189-9868858 No 10 >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=44.30 E-value=4.3 Score=19.01 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=37.9 Q ss_pred HCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC Q ss_conf 03207998888648909999888789889999999996874337899851896 Q gi|254780259|r 12 SPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110) Q Consensus 12 ~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110) .|-..|+..+...-..+++.|+++.+=.++|..|+...++.+..-+- ...|+ T Consensus 8 ~p~~~~~~~~~L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L-i~~Gk 59 (86) T d1zkha1 8 VPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKL-QYEGI 59 (86) T ss_dssp CCCCSSSSSSSCSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEE-EETTE T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCC T ss_conf 48987654556477499999899896999999998665699689798-85881 No 11 >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Probab=41.87 E-value=11 Score=16.62 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=34.6 Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE Q ss_conf 4890999988878988999999999687433789985189633 Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66 (110) Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K 66 (110) ..+.+.+.|+++.|=.++|+.|+...++.+.... +...|+.- T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qr-L~~~Gk~L 50 (76) T d1ogwa_ 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQL 50 (76) T ss_dssp TSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEE-EEETTEEC T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHEE-EEECCEEC T ss_conf 9999999978978399999753032498958877-37788674 No 12 >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Probab=35.32 E-value=11 Score=16.58 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=29.7 Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE Q ss_conf 489099998887898899999999968743378 Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSV 56 (110) Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~V 56 (110) +...+.+.|++++|=.++|..|+..+++.+..- T Consensus 16 ~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Q 48 (105) T d1v2ya_ 16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE 48 (105) T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHH T ss_conf 899999997998929999999999879697881 No 13 >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Probab=33.78 E-value=15 Score=15.86 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.0 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC Q ss_conf 8909999888789889999999996874337899851896 Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110) Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110) .+++.|.|++++|=.++|+.++..+++.+...+ +...|| T Consensus 19 ~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qr-L~f~Gk 57 (83) T d1wx8a1 19 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLV-LIFTGK 57 (83) T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBC-CEETTE T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEE-EEEEHH T ss_conf 985999999989299999998888698956799-998810 No 14 >d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Probab=31.48 E-value=17 Score=15.64 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=29.1 Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 890999988878988999999999687433789985 Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110) Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110) .+.|+-.++.++|.-++++.++. || .|.+|+.+. T Consensus 9 ~~lfV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~ 42 (90) T d2cqga1 9 SDLIVLGLPWKTTEQDLKEYFST-FG-EVLMVQVKK 42 (90) T ss_dssp CCEEEESCCSSCCHHHHHHHHGG-GS-CEEEEEEEE T ss_pred CEEEEECCCCCCCHHHHHHHHHH-HC-CCCEEEECC T ss_conf 86999799998999999999976-26-330000024 No 15 >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Probab=30.04 E-value=18 Score=15.50 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=33.9 Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE Q ss_conf 489099998887898899999999968743378998518963 Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110) Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110) ....+++.|+++.|=.++|+.|+...|+.+...+ +...|+. T Consensus 12 ~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qr-L~~~gk~ 52 (76) T d1z2ma2 12 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKP 52 (76) T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEE T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEE-EEECCEE T ss_conf 9999999978978499999999877567943737-8877708 No 16 >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=29.76 E-value=18 Score=15.47 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=34.0 Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE Q ss_conf 489099998887898899999999968743378998518963 Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110) Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110) ....+++.|+++.+=.++|+.++...|+.+...+ +...||. T Consensus 9 ~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qr-Li~~Gk~ 49 (73) T d1bt0a_ 9 TGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQR-LIYAGKQ 49 (73) T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEE T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEE-EEECCEE T ss_conf 9999999988978199999988878599969999-8989808 No 17 >d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]} Probab=28.78 E-value=7.3 Score=17.71 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=32.8 Q ss_pred CCHHHHHHHHCCEEEEEECC---CCCHHHHHHHHHHHHCCCEEEEEEEEC Q ss_conf 07998888648909999888---789889999999996874337899851 Q gi|254780259|r 15 IAEKSTLLAGQNQVVFNVKK---DSSKSEIKSAVEALFSVKVVSVNTLIR 61 (110) Q Consensus 15 ~TEKs~~~~e~n~y~F~V~~---~atK~eIK~ave~~f~V~V~~Vnt~~~ 61 (110) +.++-..|+.-.+++|.|.- .-++.+|+..+-++|+++..-|=.... T Consensus 6 ~~~k~N~LL~RkEi~~~v~h~g~Tpsr~ei~~kla~~~~~~~~~vvv~~~ 55 (102) T d1ywxa1 6 ISDRNNPLLQRREIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVDTL 55 (102) T ss_dssp EEEEEETTTTEEEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEEEE T ss_pred EEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 86034788462899999978899989999999999977949688999747 No 18 >d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]} Probab=28.18 E-value=4.3 Score=19.03 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=32.5 Q ss_pred CCCHHHHHHHHCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEE Q ss_conf 20799888864890999988----8789889999999996874337899 Q gi|254780259|r 14 VIAEKSTLLAGQNQVVFNVK----KDSSKSEIKSAVEALFSVKVVSVNT 58 (110) Q Consensus 14 ~~TEKs~~~~e~n~y~F~V~----~~atK~eIK~ave~~f~V~V~~Vnt 58 (110) ++++|...|+.-.+++|.|. +.-++.||+..+-++|+++..-|=. T Consensus 5 I~~~k~NpLL~RrEi~~~v~h~g~~Tpsr~ei~~kla~~~~~~~~~vvv 53 (98) T d2g1da1 5 IKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIV 53 (98) T ss_dssp EEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEEC T ss_pred EEEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 9860228885628999999718999989999999999997899687999 No 19 >d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]} Probab=23.71 E-value=15 Score=15.91 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=31.1 Q ss_pred HHHHHHHCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 9888864890999988----878988999999999687433789985 Q gi|254780259|r 18 KSTLLAGQNQVVFNVK----KDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110) Q Consensus 18 Ks~~~~e~n~y~F~V~----~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110) +...|+.-.++.|.+. +.-++.||+..+-++|+++..-|=... T Consensus 9 ~~N~LL~R~Ei~~~v~h~g~~Tpsr~ei~~kla~~~~~~~~~vvv~~ 55 (93) T d2v94a1 9 KENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY 55 (93) T ss_dssp EEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEE T ss_pred CCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 11787152899999972899998999999999998788978899981 No 20 >d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]} Probab=23.31 E-value=9.3 Score=17.12 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=32.2 Q ss_pred CCHHHHHHHHCCEEEEEECC---CCCHHHHHHHHHHHHCCCEEEEEEEEC Q ss_conf 07998888648909999888---789889999999996874337899851 Q gi|254780259|r 15 IAEKSTLLAGQNQVVFNVKK---DSSKSEIKSAVEALFSVKVVSVNTLIR 61 (110) Q Consensus 15 ~TEKs~~~~e~n~y~F~V~~---~atK~eIK~ave~~f~V~V~~Vnt~~~ 61 (110) +.++-..|+.-.+++|.+.- .-++.+|+.++-++|+++..-|=.... T Consensus 6 ~~~k~N~LL~R~Ei~~~v~h~g~Tpsr~ei~~kla~~~~~~~~~vvv~~~ 55 (101) T d1xn9a_ 6 IKDKKNPLLNRRELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRI 55 (101) T ss_dssp EEEEEETTTTEEEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEEEE T ss_pred EEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 86044888241899999988999989999999999967939577999747 No 21 >d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Probab=22.04 E-value=25 Score=14.62 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=27.3 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 90999988878988999999999687433789985 Q gi|254780259|r 26 NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110) Q Consensus 26 n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110) +.|+=.++.+++..++++.++. || .|.+|.... T Consensus 4 ~l~V~nLp~~~te~~l~~~f~~-~G-~v~~v~i~~ 36 (82) T d1fxla1 4 NLIVNYLPQNMTQEEFRSLFGS-IG-EIESCKLVR 36 (82) T ss_dssp EEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEE T ss_pred EEEEECCCCCCCHHHHHHHHHH-HC-CCCCCCCEE T ss_conf 8999898987989999999999-69-764101000 No 22 >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Probab=21.05 E-value=26 Score=14.50 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=31.9 Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 6489099998887898899999999968743378998 Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110) Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110) .+...+...|++..|=.++|..++.+||+.+....-+ T Consensus 20 ~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~ 56 (97) T d1wjna_ 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLS 56 (97) T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEE T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHEEEE T ss_conf 7775699991999979999999999879696893999 No 23 >d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Probab=20.91 E-value=26 Score=14.49 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=30.2 Q ss_pred HHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 8864890999988878988999999999687433789985 Q gi|254780259|r 21 LLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110) Q Consensus 21 ~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110) .+.+.|.|+-.+++++|..++++.++. || .|.+|..+. T Consensus 3 s~k~~~lfV~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~ 40 (85) T d1fxla2 3 SIRDANLYVSGLPKTMTQKELEQLFSQ-YG-RIITSRILV 40 (85) T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEE T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-HC-CCCCCCCCC T ss_conf 888999999598998989999999998-49-763103012 Done!