HHsearch alignment for GI: 254780260 and conserved domain: CHL00147

>CHL00147 rpl4 ribosomal protein L4; Validated.
Probab=100.00  E-value=0  Score=509.39  Aligned_cols=205  Identities=30%  Similarity=0.426  Sum_probs=198.9

Q ss_pred             CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r    1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV   80 (207)
Q Consensus         1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs   80 (207)
T Consensus         6 mmk~~v~n~~g~~~g~~~l~~~v~~~~~~-~l~h~~v~~~~an~R~gt~~tK~R~eV~gsgkKp~~QKGTGrAR~Gs~rs   84 (214)
T CHL00147          6 FLNYPVIDLNGQQLGEAKLKLNVQEDSGN-YLLHRALVRQLNSQRQGTASTKTRSEVRGGGRKPWKQKGTGRARAGSSRS   84 (214)
T ss_pred             CEEEEEECCCCCCCCEEEECHHHHCCCHH-HHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             10247785889883168817778488646-79999999999862357623564311367789875658887568888868


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC--CEEEEECCC
Q ss_conf             101057742277875320000159999999998787650595899514337877818999984113556--327861577
Q gi|254780260|r   81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQ  158 (207)
Q Consensus        81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~--~~llv~~~~  158 (207)
T Consensus        85 P~~rGGG~afGP~pr~y~~klnKK~r~lAlr~ALS~K~~~~~vv~~~~~~~~~pKTK~~~~~L~~l~~~~~~~~LiV~~~  164 (214)
T CHL00147         85 PLWKGGGVIFGPKPRTYSLKLNKKERRLALRTALYNKSNNTLVVENFETGIEKPKTKTLVNFLKRLNINLNNKVLIIVDE  164 (214)
T ss_pred             CEECCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf             71257822049977335743889999999999999862089499970464457454999999997184667728999579


Q ss_pred             CCHHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf             517899996278895684240288757100590898499999999973
Q gi|254780260|r  159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF  206 (207)
Q Consensus       159 ~d~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~l  206 (207)
T Consensus       165 ~~~nl~~S~RNi~~v~v~~~~~lNvyDlL~~~~vVit~~Al~~leE~~  212 (214)
T CHL00147        165 KSSNLWLSTRNLKNVELIAADHLNIKSLLKAKKIIITTEALKIIKEVY  212 (214)
T ss_pred             CCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf             758899998487985686259840999966994998689999999984