HHsearch alignment for GI: 254780260 and conserved domain: CHL00147
>CHL00147 rpl4 ribosomal protein L4; Validated.
Probab=100.00 E-value=0 Score=509.39 Aligned_cols=205 Identities=30% Similarity=0.426 Sum_probs=198.9
Q ss_pred CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 (207)
Q Consensus 1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs 80 (207)
T Consensus 6 mmk~~v~n~~g~~~g~~~l~~~v~~~~~~-~l~h~~v~~~~an~R~gt~~tK~R~eV~gsgkKp~~QKGTGrAR~Gs~rs 84 (214)
T CHL00147 6 FLNYPVIDLNGQQLGEAKLKLNVQEDSGN-YLLHRALVRQLNSQRQGTASTKTRSEVRGGGRKPWKQKGTGRARAGSSRS 84 (214)
T ss_pred CEEEEEECCCCCCCCEEEECHHHHCCCHH-HHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 10247785889883168817778488646-79999999999862357623564311367789875658887568888868
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC--CEEEEECCC
Q ss_conf 101057742277875320000159999999998787650595899514337877818999984113556--327861577
Q gi|254780260|r 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQ 158 (207)
Q Consensus 81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~--~~llv~~~~ 158 (207)
T Consensus 85 P~~rGGG~afGP~pr~y~~klnKK~r~lAlr~ALS~K~~~~~vv~~~~~~~~~pKTK~~~~~L~~l~~~~~~~~LiV~~~ 164 (214)
T CHL00147 85 PLWKGGGVIFGPKPRTYSLKLNKKERRLALRTALYNKSNNTLVVENFETGIEKPKTKTLVNFLKRLNINLNNKVLIIVDE 164 (214)
T ss_pred CEECCCEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 71257822049977335743889999999999999862089499970464457454999999997184667728999579
Q ss_pred CCHHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf 517899996278895684240288757100590898499999999973
Q gi|254780260|r 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 (207)
Q Consensus 159 ~d~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~l 206 (207)
T Consensus 165 ~~~nl~~S~RNi~~v~v~~~~~lNvyDlL~~~~vVit~~Al~~leE~~ 212 (214)
T CHL00147 165 KSSNLWLSTRNLKNVELIAADHLNIKSLLKAKKIIITTEALKIIKEVY 212 (214)
T ss_pred CCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 758899998487985686259840999966994998689999999984