HHsearch alignment for GI: 254780260 and conserved domain: PRK05319
>PRK05319 rplD 50S ribosomal protein L4; Provisional.
Probab=100.00 E-value=0 Score=500.41 Aligned_cols=206 Identities=42% Similarity=0.677 Sum_probs=201.5
Q ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 (207)
Q Consensus 2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp 81 (207)
T Consensus 1 Mk~~v~~~~g~~~~~i~L~~~vF~~~~r~dli~~~v~~~~~n~Rqgt~~tk~r~ev~gsg~K~~~QKGtGrAR~Gs~rsP 80 (206)
T PRK05319 1 MELKVLNLDGKEAGEVELSDAVFGIEPNEDLLHQVVVAQLANARQGTHATKTRSEVSGGGKKPWRQKGTGRARQGSIRSP 80 (206)
T ss_pred CCEEEECCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 94058878998811698599996998658899999999998551566668841101788898788689867776877798
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 01057742277875320000159999999998787650595899514337877818999984113556327861577517
Q gi|254780260|r 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR 161 (207)
Q Consensus 82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d~ 161 (207)
T Consensus 81 ~~~gGg~a~gP~pr~~~~klnKK~r~lAl~~aLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~~LiV~~~~~~ 160 (206)
T PRK05319 81 QWRGGGVVFGPKPRDYSQKLNKKVRRLALRSALSEKAREGRLVVVDDFSLEAPKTKELAAKLKNLGLEDKVLIVTDEVDE 160 (206)
T ss_pred CEECCCEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCH
T ss_conf 44678233599661546400099999999999999975388599725766677889999999977998753798366447
Q ss_pred HHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHHC
Q ss_conf 8999962788956842402887571005908984999999999739
Q gi|254780260|r 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 (207)
Q Consensus 162 n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~lk 207 (207)
T Consensus 161 nl~~a~rNi~~v~v~~~~~lnv~dLl~~~~lvit~~Al~~LeerLs 206 (206)
T PRK05319 161 NLYLSARNLPNVDVLPADGLNVYDLLRADKVVITKAAVKKIEERLA 206 (206)
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHHC
T ss_conf 8999982879925875488109998579959987899999999729