HHsearch alignment for GI: 254780260 and conserved domain: PRK05319

>PRK05319 rplD 50S ribosomal protein L4; Provisional.
Probab=100.00  E-value=0  Score=500.41  Aligned_cols=206  Identities=42%  Similarity=0.677  Sum_probs=201.5

Q ss_pred             CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r    2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS   81 (207)
Q Consensus         2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp   81 (207)
T Consensus         1 Mk~~v~~~~g~~~~~i~L~~~vF~~~~r~dli~~~v~~~~~n~Rqgt~~tk~r~ev~gsg~K~~~QKGtGrAR~Gs~rsP   80 (206)
T PRK05319          1 MELKVLNLDGKEAGEVELSDAVFGIEPNEDLLHQVVVAQLANARQGTHATKTRSEVSGGGKKPWRQKGTGRARQGSIRSP   80 (206)
T ss_pred             CCEEEECCCCCEEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             94058878998811698599996998658899999999998551566668841101788898788689867776877798


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf             01057742277875320000159999999998787650595899514337877818999984113556327861577517
Q gi|254780260|r   82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR  161 (207)
Q Consensus        82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d~  161 (207)
T Consensus        81 ~~~gGg~a~gP~pr~~~~klnKK~r~lAl~~aLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~~LiV~~~~~~  160 (206)
T PRK05319         81 QWRGGGVVFGPKPRDYSQKLNKKVRRLALRSALSEKAREGRLVVVDDFSLEAPKTKELAAKLKNLGLEDKVLIVTDEVDE  160 (206)
T ss_pred             CEECCCEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCH
T ss_conf             44678233599661546400099999999999999975388599725766677889999999977998753798366447


Q ss_pred             HHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHHC
Q ss_conf             8999962788956842402887571005908984999999999739
Q gi|254780260|r  162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK  207 (207)
Q Consensus       162 n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~lk  207 (207)
T Consensus       161 nl~~a~rNi~~v~v~~~~~lnv~dLl~~~~lvit~~Al~~LeerLs  206 (206)
T PRK05319        161 NLYLSARNLPNVDVLPADGLNVYDLLRADKVVITKAAVKKIEERLA  206 (206)
T ss_pred             HHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHHC
T ss_conf             8999982879925875488109998579959987899999999729