HHsearch alignment of GI: 254780260 and MMDB domain: 1dmg_A_

>1dmg_A (A:) Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon; HET: CIT; 1.70A {Thermotoga maritima}
Probab=100.00  E-value=0  Score=458.88  Aligned_cols=205  Identities=34%  Similarity=0.534  Sum_probs=195.2

Q ss_pred             CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r    2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS   81 (207)
Q Consensus         2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp   81 (207)
                      ++++||+++|+++|+++||++||+.|+|+|+||++|+||++++|||||+||||+||+||||||||||||||||+||+|+|
T Consensus         1 a~~~v~~~~g~~~~~i~l~~~vF~~~~r~dil~~~v~~~~~~~R~gta~tktraEv~GsgrK~~~QKGtGrAR~Gs~~sp   80 (225)
T 1dmg_A            1 AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSP   80 (225)
T ss_dssp             CEEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC---------------------------------------
T ss_pred             CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             90478758998811698098995898569999999999997442465667743377503445655678665432434220


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC--EEEEEC--C
Q ss_conf             010577422778753200001599999999987876505958995143378778189999841135563--278615--7
Q gi|254780260|r   82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDG--C  157 (207)
Q Consensus        82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~--~llv~~--~  157 (207)
                      +|+|||+||||+||+|+++||+|++++|+++|||.++++++|+|||++.++++|||++.++|+.+++..  .++++.  .
T Consensus        81 ~~~gGG~a~gp~pr~~~~klnkK~~~lAl~~aLs~k~~~~~l~Vvd~~~~~~~kTk~~~~~l~~~~~~~~~~~~v~~~~~  160 (225)
T 1dmg_A           81 IWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKE  160 (225)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEECCCS
T ss_pred             EEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             55024556688772010008899999999999999870587177224434565608999875201334652356513543


Q ss_pred             CCCHHHHHHHCCCCCCEEEEHH---------------CCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf             7517899996278895684240---------------288757100590898499999999973
Q gi|254780260|r  158 QLDRNFQLAARNIPNINLLPVQ---------------GINVYDILRCSKLVLSKSAIEALEDRF  206 (207)
Q Consensus       158 ~~d~n~~~s~rNi~~v~v~~~~---------------~lnv~dll~~~~iVit~~Ai~~l~e~l  206 (207)
                      +.|+|+++|+||||+|++++++               ++|+||||++++||||++|++.|+|+|
T Consensus       161 ~~~~n~~~a~rNl~~v~~~~~~~l~~~~la~~~~~~~~lnv~dil~~~~ivit~~Al~~L~~~~  224 (225)
T 1dmg_A          161 EGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL  224 (225)
T ss_dssp             HHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSSEEEEEHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHHHHHC
T ss_conf             1037899987278996486346633111233346657844999834891998599999999870