HHsearch alignment of GI: 254780260 and MMDB domain: 2zkr_c_1-28_147-421
>2zkr_c (c:1-28,c:147-421) 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.96 E-value=8.7e-10 Score=75.55 Aligned_cols=84 Identities=26% Similarity=0.285 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCC----------------------------CCEEEEECCCCCHHHHHHHCCCC
Q ss_conf 59589951433787781899998411355----------------------------63278615775178999962788
Q gi|254780260|r 120 SNDIMVIDNLVSKECKTKYLVTRFRALDL----------------------------SNALIIDGCQLDRNFQLAARNIP 171 (207)
Q Consensus 120 ~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~----------------------------~~~llv~~~~~d~n~~~s~rNi~ 171 (207)
+--|+|.|++. ...||++++.+|+.+|+ .+.|||+. .|..+.+++||||
T Consensus 31 ~~p~~~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~v~~--~~~~~~~a~~~~~ 107 (303)
T 2zkr_c 31 ELPLVVEDKVE-GYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN--EDNGIIKAFRKHP 107 (303)
T ss_dssp CCSEEECGGGG-GCCCHHHHHHHHHHTTCTHHHHHTTSSCEECSSSTTTTTCCEECCCCCEEEES--SSSCCCHHHHTST
T ss_pred CCCEEEECCCC-CCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHCCHHHHHCCCCCCCCCEEEEEC--CCHHHHHHHCCCC
T ss_conf 57779813533-55438999999986285377888751220010111220244457762299964--8627999970789
Q ss_pred CCEEEEHHCCCHHHHEEC----CCEEEEHHHHHHHHHHH
Q ss_conf 956842402887571005----90898499999999973
Q gi|254780260|r 172 NINLLPVQGINVYDILRC----SKLVLSKSAIEALEDRF 206 (207)
Q Consensus 172 ~v~v~~~~~lnv~dll~~----~~iVit~~Ai~~l~e~l 206 (207)
+|+++.++.||+.+|... ...|++++|++.+...+
T Consensus 108 g~~~~~~~~l~~~~lapg~~~~r~ti~t~sAi~~l~~~~ 146 (303)
T 2zkr_c 108 GITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLY 146 (303)
T ss_dssp TCEEEEGGGCCHHHHSGGGCCCCCEEEEHHHHHHHTTC-
T ss_pred CCEEEECCCCCHHHCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 956862477659981677876735998179999999874