HHsearch results for GI: 254780260 and protein with PDBid: 1vq8_C
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=100.00 E-value=0 Score=414.83 Aligned_cols=203 Identities=18% Similarity=0.209 Sum_probs=187.0
Q ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCC--CCCCCCCCCCCCCCCCCCCC
Q ss_conf 6226554688645568609779398766899999999999727886200136212148--98876455887554236531
Q gi|254780260|r 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY--TGSKMYVQKGTGRARHSSKS 79 (207)
Q Consensus 2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~g--s~kK~~~QKGtGrAR~Gs~r 79 (207)
|+++|||++|+++|+++||+ ||+.|+|.||||++|+||++|+|||||+||+|+++.+ ++.|+|+||||||||+|++|
T Consensus 1 Mk~~v~~~~g~~~g~i~lp~-vF~~~i~~dllh~~v~~~~an~Rqgt~~tk~rg~~~~~~~~gk~~~~~~~grar~g~~r 79 (246)
T 1vq8_C 1 MQATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARR 79 (246)
T ss_dssp CEEEEECTTSCEEEEEECCG-GGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEETTEECS
T ss_pred CCEEEECCCCCEEEEEECHH-HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 92289768998820787437-64899778999999999997263776777646605641455774334676665657873
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCE-------------EEEECCCCCCCCHHHHHHHHHH
Q ss_conf 110105774227787-53200001599999999987876505958-------------9951433787781899998411
Q gi|254780260|r 80 VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRA 145 (207)
Q Consensus 80 sp~~rgGg~afgp~p-r~~~~klnkK~~~lAl~saLs~k~~~~~l-------------~Vvd~~~~~~~KTK~~~~~L~~ 145 (207)
+|+|||||+||||+| |+|+++||||++++|+++|||+++.++.+ +|+|++.++.||||++.++|++
T Consensus 80 sP~~rgGg~ahgPk~~r~~~~klnKK~r~~Al~sALs~k~~~~~v~~~~~~~~~~~~~iVv~~~~~~~~KTK~~~~~L~~ 159 (246)
T 1vq8_C 80 VPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEA 159 (246)
T ss_dssp STTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCSSCSEEECGGGGGCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88547786316999973542453499999999999999765444321132313666541100001445408999999986
Q ss_pred CCCCCE-----------------------EEEECCCCCHHHHHHHCCCCCCEEEEHHCCCHHHHEECCC----EEEEHHH
Q ss_conf 355632-----------------------7861577517899996278895684240288757100590----8984999
Q gi|254780260|r 146 LDLSNA-----------------------LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSA 198 (207)
Q Consensus 146 l~~~~~-----------------------llv~~~~~d~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~----iVit~~A 198 (207)
+++... .+++..+.|+|+.+|+||||+|+++++++||+||||++++ +|||++|
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~vl~~~~~n~~~s~rNip~v~v~~~~~lNvydLl~~~~~~r~vV~T~~A 239 (246)
T 1vq8_C 160 LDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESA 239 (246)
T ss_dssp TTCTHHHHHSSCCEECSSGGGGGTCCEECCCCCEEEESSSCCTTTTTSTTCEEEETTTCCHHHHSGGGCCCCCEEEEHHH
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCHHHHCCCCCCCCEEEEEHHH
T ss_conf 28755415621432223212222331234553311267189999718999669756884099902668668609983999
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q gi|254780260|r 199 IEALEDR 205 (207)
Q Consensus 199 i~~l~e~ 205 (207)
|+.|+||
T Consensus 240 l~~l~eR 246 (246)
T 1vq8_C 240 LAEVAER 246 (246)
T ss_dssp HHHGGGC
T ss_pred HHHHHCC
T ss_conf 9998549