HHsearch results for GI: 254780260 and protein with PDBid: 2j01_F

>2j01_F 50S ribosomal protein L4; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.22.1.1 PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=100.00  E-value=0  Score=452.84  Aligned_cols=202  Identities=32%  Similarity=0.486  Sum_probs=187.8

Q ss_pred             CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r    1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV   80 (207)
Q Consensus         1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs   80 (207)
                      ||++++++.+|+..++++||     .|+|+||||++|+||++|+|||||+||+|+||+|||+|||+||||||||+|++|+
T Consensus         6 ~~~~~v~~~~g~~~~~~~l~-----~~v~~dli~~~v~~~~an~Rqgta~tk~r~ev~gsgrK~~~qKGtGrAR~Gs~rs   80 (210)
T 2j01_F            6 VYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGA   80 (210)
T ss_dssp             CCCCCSSSCCCCCCCSTTSS-----SCCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSCCCCCCSSCSSSSSSCCCCCTTS
T ss_pred             EEEEEEECCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88654315888780366257-----6448999999999999854367745761455467787678848998678788868


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             10105774227787532000015999999999878765059589951433787781899998411355632786157751
Q gi|254780260|r   81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD  160 (207)
Q Consensus        81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d  160 (207)
                      |+|||||++|||+||+|++++|||++++|+++|||.++++++|+|||+|..+++|||++.++|+++++.+..+++..+.|
T Consensus        81 p~~rgGg~~~gp~~r~~~~klnkK~r~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~l~~~~~vl~~~~~  160 (210)
T 2j01_F           81 PIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGN  160 (210)
T ss_dssp             TTSTTSCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSCHHHHHHHHHHHTCCSSSCEEEECSC
T ss_pred             CEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCH
T ss_conf             84447711179985443678878999999999999997308757723433357786899999998176566530102406


Q ss_pred             HHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHHC
Q ss_conf             78999962788956842402887571005908984999999999739
Q gi|254780260|r  161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK  207 (207)
Q Consensus       161 ~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~lk  207 (207)
                      +|+++|+||||+|+++++++||+||||++++||||++|++.|+|+|-
T Consensus       161 en~~~s~rNi~~v~v~~~~~lnv~dlL~~~~lvit~~Al~~l~e~l~  207 (210)
T 2j01_F          161 ELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIG  207 (210)
T ss_dssp             HHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHHHHHHTCC
T ss_pred             HHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHHC
T ss_conf             78999984779977863388229998569969987899999999966