HHsearch results for GI: 254780260 and protein with PDBid: 2j01_F
>2j01_F 50S ribosomal protein L4; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.22.1.1 PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=100.00 E-value=0 Score=452.84 Aligned_cols=202 Identities=32% Similarity=0.486 Sum_probs=187.8
Q ss_pred CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 (207)
Q Consensus 1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs 80 (207)
||++++++.+|+..++++|| .|+|+||||++|+||++|+|||||+||+|+||+|||+|||+||||||||+|++|+
T Consensus 6 ~~~~~v~~~~g~~~~~~~l~-----~~v~~dli~~~v~~~~an~Rqgta~tk~r~ev~gsgrK~~~qKGtGrAR~Gs~rs 80 (210)
T 2j01_F 6 VYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGA 80 (210)
T ss_dssp CCCCCSSSCCCCCCCSTTSS-----SCCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSCCCCCCSSCSSSSSSCCCCCTTS
T ss_pred EEEEEEECCCCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88654315888780366257-----6448999999999999854367745761455467787678848998678788868
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 10105774227787532000015999999999878765059589951433787781899998411355632786157751
Q gi|254780260|r 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD 160 (207)
Q Consensus 81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d 160 (207)
|+|||||++|||+||+|++++|||++++|+++|||.++++++|+|||+|..+++|||++.++|+++++.+..+++..+.|
T Consensus 81 p~~rgGg~~~gp~~r~~~~klnkK~r~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~l~~~~~vl~~~~~ 160 (210)
T 2j01_F 81 PIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGN 160 (210)
T ss_dssp TTSTTSCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSCHHHHHHHHHHHTCCSSSCEEEECSC
T ss_pred CEECCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCCH
T ss_conf 84447711179985443678878999999999999997308757723433357786899999998176566530102406
Q ss_pred HHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHHC
Q ss_conf 78999962788956842402887571005908984999999999739
Q gi|254780260|r 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207 (207)
Q Consensus 161 ~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~lk 207 (207)
+|+++|+||||+|+++++++||+||||++++||||++|++.|+|+|-
T Consensus 161 en~~~s~rNi~~v~v~~~~~lnv~dlL~~~~lvit~~Al~~l~e~l~ 207 (210)
T 2j01_F 161 ELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIG 207 (210)
T ss_dssp HHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHHC
T ss_conf 78999984779977863388229998569969987899999999966