HHSEARCH alignment of GI: 254780260 and SCOP domain: d1vqoc1

Alignment
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00  E-value=0  Score=412.91  Aligned_cols=203  Identities=19%  Similarity=0.215  Sum_probs=185.2

Q ss_pred             CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             62265546886455686097793987668999999999997278862001362121--4898876455887554236531
Q gi|254780260|r    2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV--AYTGSKMYVQKGTGRARHSSKS   79 (207)
Q Consensus         2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev--~gs~kK~~~QKGtGrAR~Gs~r   79 (207)
                      |+++|||.+|+++|+|+||+ ||+.|+|.||||++|+||++|+|||||++++|++.  ++++.+.|+||||||||+|++|
T Consensus         1 Mk~~v~~~~gk~~g~i~lpd-vF~~~~r~dlvh~~v~~~~an~Rqgt~~~k~~g~~t~a~~~g~g~~qk~tgrar~g~rr   79 (246)
T d1vqoc1           1 MQATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARR   79 (246)
T ss_dssp             CEEEEECTTSCEEEEEECCG-GGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEETTEECS
T ss_pred             CCEEEECCCCCEEEEEECHH-HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             92389868998840787716-62988788999999999997363675777532142211135762235577764557765


Q ss_pred             CCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCE-------------EEEECCCCCCCCHHHHHHHHHH
Q ss_conf             110105774227787-53200001599999999987876505958-------------9951433787781899998411
Q gi|254780260|r   80 VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRA  145 (207)
Q Consensus        80 sp~~rgGg~afgp~p-r~~~~klnkK~~~lAl~saLs~k~~~~~l-------------~Vvd~~~~~~~KTK~~~~~L~~  145 (207)
                      +|+|||||+||||+| |+|+++||||++++||++|||+++.++.+             +|+|++..+.+|||++.++|++
T Consensus        80 sP~~rGGG~a~gPkp~r~~~~klnkK~r~lAl~~aLs~k~~~~~v~~~g~~~~~~~~~iV~~~~~~~~~KTK~~~~~L~~  159 (246)
T d1vqoc1          80 VPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEA  159 (246)
T ss_dssp             STTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCSSCSEEECGGGGGCCCHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf             78747776235998852066878999999999999998512430564032024777778950443433167999999986


Q ss_pred             CCCCCEEEE-----------------------ECCCCCHHHHHHHCCCCCCEEEEHHCCCHHHHEECCC----EEEEHHH
Q ss_conf             355632786-----------------------1577517899996278895684240288757100590----8984999
Q gi|254780260|r  146 LDLSNALII-----------------------DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSA  198 (207)
Q Consensus       146 l~~~~~llv-----------------------~~~~~d~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~----iVit~~A  198 (207)
                      +++.+.+++                       +..+.|+++.+|+||||+|+++++++||+||||++++    +|||++|
T Consensus       160 l~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~vl~~~~~~~~~a~rNip~v~v~~~~~lNv~dll~~~~l~r~vV~T~~A  239 (246)
T d1vqoc1         160 LDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESA  239 (246)
T ss_dssp             TTCTHHHHHTSCCEECSSGGGGGTCCEECCCCCEEEESSSCCTTTTTSTTCEEEETTTCCHHHHSGGGCCCCCEEEEHHH
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCCEEEEEHHH
T ss_conf             58754305621443221200003543445554422357089999758999779867984199901668778609982999


Q ss_pred             HHHHHHH
Q ss_conf             9999997
Q gi|254780260|r  199 IEALEDR  205 (207)
Q Consensus       199 i~~l~e~  205 (207)
                      ++.|+||
T Consensus       240 l~~leeR  246 (246)
T d1vqoc1         240 LAEVAER  246 (246)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHCC
T ss_conf             9998549


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L4
superfamily: Ribosomal protein L4
family: Ribosomal protein L4
domain: Ribosomal protein L4
species: Archaeon Haloarcula marismortui [TaxId: 2238]