Query gi|254780260|ref|YP_003064673.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 207
No_of_seqs 139 out of 2042
Neff 6.7
Searched_HMMs 13730
Date Tue May 24 07:05:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780260.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dmga_ c.22.1.1 (A:) Ribosoma 100.0 0 0 464.0 17.3 205 2-206 1-224 (225)
2 d2gycc1 c.22.1.1 (C:1-198) Rib 100.0 0 0 477.8 3.5 198 2-204 1-198 (198)
3 d2j01f1 c.22.1.1 (F:1-208) Rib 100.0 0 0 455.0 17.2 199 1-206 6-206 (208)
4 d2zjrc1 c.22.1.1 (C:2-198) Rib 100.0 0 0 464.7 7.5 197 2-204 1-197 (197)
5 d1vqoc1 c.22.1.1 (C:1-246) Rib 100.0 0 0 412.9 10.3 203 2-205 1-246 (246)
6 d1vqoc1 c.22.1.1 (C:1-246) Rib 91.0 0.092 6.7E-06 27.7 3.4 48 29-76 32-80 (246)
7 d2j01p1 c.12.1.1 (P:5-150) Rib 77.1 0.18 1.3E-05 26.1 -0.6 36 53-89 16-53 (146)
8 d1i5ea_ c.61.1.1 (A:) Uracil P 74.5 2 0.00014 20.2 4.2 74 93-179 109-182 (208)
9 d1v9sa1 c.61.1.1 (A:1-208) Ura 73.3 2.2 0.00016 19.9 4.2 71 94-178 110-181 (208)
10 d1o5oa_ c.61.1.1 (A:) Uracil P 71.7 2 0.00015 20.1 3.7 73 93-179 111-184 (210)
11 d1xtta1 c.61.1.1 (A:2-216) Ura 48.6 7.9 0.00058 16.7 4.5 72 94-178 118-190 (215)
12 d1l1qa_ c.61.1.1 (A:) Adenine 39.9 3.3 0.00024 18.9 0.3 31 119-150 115-146 (181)
13 d1vdma1 c.61.1.1 (A:1-153) Ppr 20.4 24 0.0018 14.0 3.3 35 118-153 81-116 (153)
No 1
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=464.00 Aligned_cols=205 Identities=34% Similarity=0.525 Sum_probs=194.2
Q ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 (207)
Q Consensus 2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp 81 (207)
++++|||++|+++|+++||++||+.|+|.||||++|+||++|+|||||+||+|+||+|||+|||+||||||||+|++|+|
T Consensus 1 ~~v~v~~~~g~~~g~i~L~~~vF~~~~r~dli~~~v~~~~~~~Rqgt~~tk~rsev~g~gkK~~~QKGtG~AR~Gs~~sp 80 (225)
T d1dmga_ 1 AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSP 80 (225)
T ss_dssp CEEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC---------------------------------------
T ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 91578758998812798298995998569999999999998451676666633266403445556678676654532000
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC--CEEEEECC--
Q ss_conf 01057742277875320000159999999998787650595899514337877818999984113556--32786157--
Q gi|254780260|r 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGC-- 157 (207)
Q Consensus 82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~--~~llv~~~-- 157 (207)
+|||||+||||+||+|+++||||++++|+++|||.++++++|+|||+|.++++|||++.++|+++++. +.++|+..
T Consensus 81 ~~~gGg~a~gp~pr~~~~klnkK~r~~Al~~aLs~k~~~~~l~VVd~~~~~~~KTK~~~~~l~~l~~~~~~~llv~~~~~ 160 (225)
T d1dmga_ 81 IWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKE 160 (225)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEECCCS
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 44114456688871241008899999999999999861587077224434665638999987440334552345412533
Q ss_pred CCCHHHHHHHCCCCCCEEEEHHC---------------CCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf 75178999962788956842402---------------88757100590898499999999973
Q gi|254780260|r 158 QLDRNFQLAARNIPNINLLPVQG---------------INVYDILRCSKLVLSKSAIEALEDRF 206 (207)
Q Consensus 158 ~~d~n~~~s~rNi~~v~v~~~~~---------------lnv~dll~~~~iVit~~Ai~~l~e~l 206 (207)
+.++|+++|+||||+|+++.+++ +||||||++++||||++||+.|||+|
T Consensus 161 e~~~n~~~s~rNlp~v~v~~~~~~~~~~~~~~~~~~~~lNvydlL~~~~lVit~~Al~~lee~L 224 (225)
T d1dmga_ 161 EGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 224 (225)
T ss_dssp HHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSSEEEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHHHHHC
T ss_conf 1037799997178995476346633211233346657854999834881998599999999970
No 2
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=477.83 Aligned_cols=198 Identities=29% Similarity=0.460 Sum_probs=191.2
Q ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 (207)
Q Consensus 2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp 81 (207)
|++.+++..| +|+|+|+||+.|+|.||||++|+||++|+|||||+||||+||+|||||||+||||||||+||.|||
T Consensus 1 m~l~~~~~~~----~i~l~~~vF~~~~~~~llh~~v~~~~a~~R~gt~~tKtRseV~g~gkKp~~QKGTGrAR~Gs~rsP 76 (198)
T d2gycc1 1 MELVLKDAQS----ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSP 76 (198)
T ss_dssp CCEEEECTTC----CSCCCEECCCSCCCHHHHTTTSSSCTTCCSCCCCSSCSCCCCCCSCSSCSCCCCCCCBTTBCCSCS
T ss_pred CEEEECCCCC----EEEECHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEHHCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 9047627778----488188995987679999999999998364777666420110577667534467887877676000
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 01057742277875320000159999999998787650595899514337877818999984113556327861577517
Q gi|254780260|r 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR 161 (207)
Q Consensus 82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d~ 161 (207)
+|||||+||||+||+|+++||||++++|+++|||.|+++++|+|||+|.++++|||++..+|+++++.+.|+|+ .+.|+
T Consensus 77 ~~~gGGva~GP~pr~~~~kl~kK~r~~al~~aLs~k~~~~~l~vvd~~~~~~~kTk~~~~~l~~~~~~~~Liv~-~~~~e 155 (198)
T d2gycc1 77 IWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIIT-GELDE 155 (198)
T ss_dssp SSSSCCCSSCSCCSSSCCCCCTTTHHHHHHHHHHHTTSSSSCCEECGGGGTCCSSHHHHHHHHTTTCGGGTTTC-CCCSS
T ss_pred HCCCCCEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEC-CCCCH
T ss_conf 00357232476445767657899999999999899875687499840445687679999998551534267753-76337
Q ss_pred HHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHH
Q ss_conf 8999962788956842402887571005908984999999999
Q gi|254780260|r 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 (207)
Q Consensus 162 n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e 204 (207)
|+++|+||||+|+++++++|||||||++++||||++|++.|||
T Consensus 156 nl~~S~RNI~~v~v~~~~~lNvydlLk~~~lVit~~Al~~leE 198 (198)
T d2gycc1 156 NLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEE 198 (198)
T ss_dssp SCCGGGSSSSSCCCCCSSSCCHHHHTTTSCCCEEHHHHHHHHC
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHCCCEEEEEHHHHHHHHC
T ss_conf 7999982869955865588569999658909987899998549
No 3
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=455.03 Aligned_cols=199 Identities=32% Similarity=0.519 Sum_probs=188.6
Q ss_pred CCEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96226554688645568609779398766899999999999727886200136212148988764558875542365311
Q gi|254780260|r 1 MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80 (207)
Q Consensus 1 mm~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rs 80 (207)
||++++|+.+|++.++++|| .|+|+||||++|+||++|+|||||+||+|+||+|||+|||+||||||||+|+.|+
T Consensus 6 ~~~~~v~~~~g~~~~~~~l~-----~~v~~dli~~av~~~~a~~Rqgta~tk~R~ev~g~gkK~~~QKGtGrAR~Gs~rs 80 (208)
T d2j01f1 6 VYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGA 80 (208)
T ss_dssp CCCCCSSSCCCCCCCSTTSS-----SCCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSCCCCCCSSCSSSSSSCCCCCTTS
T ss_pred EEEEEEECCCCCEEECCCCC-----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87434545888783054056-----5248999999999999855278777886540047566667655454334555421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCE--EEEECCC
Q ss_conf 10105774227787532000015999999999878765059589951433787781899998411355632--7861577
Q gi|254780260|r 81 SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA--LIIDGCQ 158 (207)
Q Consensus 81 p~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~--llv~~~~ 158 (207)
|+|||||++|||+||+|++++|||++++|+++|||.++++++|+|||+|..+++|||++.++|+++++.+. +|++ +
T Consensus 81 p~~~gGg~~~gp~~r~~~~klnkK~r~~Al~~aLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~l~~~~~vl~v--~ 158 (208)
T d2j01f1 81 PIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLV--T 158 (208)
T ss_dssp TTSTTSCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSCHHHHHHHHHHHTCCSSSCEEEE--C
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEC--C
T ss_conf 32366620047401457888999999999999999974458714303433456561999888877502465531102--4
Q ss_pred CCHHHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHHHH
Q ss_conf 517899996278895684240288757100590898499999999973
Q gi|254780260|r 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206 (207)
Q Consensus 159 ~d~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e~l 206 (207)
.|+|+++|+||||+|+++++++||+||||++++||||++|++.|+|+|
T Consensus 159 ~~en~~~s~rNi~~v~v~~~~~lNv~dlL~~~~lvit~~Al~~L~erl 206 (208)
T d2j01f1 159 GNELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 206 (208)
T ss_dssp SCHHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHHHHHHTC
T ss_pred CHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHHHH
T ss_conf 226899998487897786338810999856993998789999999984
No 4
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=0 Score=464.71 Aligned_cols=197 Identities=35% Similarity=0.563 Sum_probs=184.6
Q ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62265546886455686097793987668999999999997278862001362121489887645588755423653111
Q gi|254780260|r 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81 (207)
Q Consensus 2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp 81 (207)
++++|++.+|++.++++|+ ++|+||||++|+||++|+|||||+||+||||+|||+|||+||||||||+||.|||
T Consensus 1 ~~~~v~~~~g~~~~~~~~~------e~~~~ll~~~v~~~~a~~R~gt~~tk~R~ev~gsgkKp~~QKGtGrAR~Gs~rsP 74 (197)
T d2zjrc1 1 AQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVP 74 (197)
T ss_dssp CCCCCSSCCCCCCCCCCTT------TCCHHHHHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCSCSSSSSSCCCSCSCST
T ss_pred CEEEEECCCCCEEEEECCC------CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9156634888768862043------0159999999999998621367567700112688887366788777886665201
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 01057742277875320000159999999998787650595899514337877818999984113556327861577517
Q gi|254780260|r 82 QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR 161 (207)
Q Consensus 82 ~~rgGg~afgp~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d~ 161 (207)
+|||||+||||+||+|+++||||++++||++|||.|+++++|+|||+|.++++|||++.++|+++++....+++..+.++
T Consensus 75 ~~rgGg~afgp~pr~~~~~lnkK~r~lal~~aLS~K~~~~~l~vvd~~~~~~~KTK~~~~~l~~~~~~~~~~vl~~~~~e 154 (197)
T d2zjrc1 75 TFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDE 154 (197)
T ss_dssp TSTTSCCTTCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCCBCSCCTTSCSSCSHHHHHHHHHTTCCSSSCEEEECCCH
T ss_pred CCCCCEEECCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCH
T ss_conf 02464565263234312325289999999999999975386587424223567738777676664004565211102125
Q ss_pred HHHHHHCCCCCCEEEEHHCCCHHHHEECCCEEEEHHHHHHHHH
Q ss_conf 8999962788956842402887571005908984999999999
Q gi|254780260|r 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204 (207)
Q Consensus 162 n~~~s~rNi~~v~v~~~~~lnv~dll~~~~iVit~~Ai~~l~e 204 (207)
|+++|+||||+|+++++++|||||||++++||||++|++.|||
T Consensus 155 n~~~s~RNi~~v~v~~~~~lNvydlLk~~~lVit~~Al~~LEE 197 (197)
T d2zjrc1 155 NTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEE 197 (197)
T ss_dssp HHHTSCCCSSSEEEEGGGCCCHHHHHHSSEEECBCTTTSSCCC
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEEEHHHHHHHHC
T ss_conf 8999973848854865488409999658959987899998539
No 5
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=0 Score=412.91 Aligned_cols=203 Identities=19% Similarity=0.215 Sum_probs=185.2
Q ss_pred CEEEEECCCCCEEEEEEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62265546886455686097793987668999999999997278862001362121--4898876455887554236531
Q gi|254780260|r 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV--AYTGSKMYVQKGTGRARHSSKS 79 (207)
Q Consensus 2 m~~~v~~~~g~~~~~i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev--~gs~kK~~~QKGtGrAR~Gs~r 79 (207)
|+++|||.+|+++|+|+||+ ||+.|+|.||||++|+||++|+|||||++++|++. ++++.+.|+||||||||+|++|
T Consensus 1 Mk~~v~~~~gk~~g~i~lpd-vF~~~~r~dlvh~~v~~~~an~Rqgt~~~k~~g~~t~a~~~g~g~~qk~tgrar~g~rr 79 (246)
T d1vqoc1 1 MQATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARR 79 (246)
T ss_dssp CEEEEECTTSCEEEEEECCG-GGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEETTEECS
T ss_pred CCEEEECCCCCEEEEEECHH-HHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 92389868998840787716-62988788999999999997363675777532142211135762235577764557765
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCCE-------------EEEECCCCCCCCHHHHHHHHHH
Q ss_conf 110105774227787-53200001599999999987876505958-------------9951433787781899998411
Q gi|254780260|r 80 VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFRA 145 (207)
Q Consensus 80 sp~~rgGg~afgp~p-r~~~~klnkK~~~lAl~saLs~k~~~~~l-------------~Vvd~~~~~~~KTK~~~~~L~~ 145 (207)
+|+|||||+||||+| |+|+++||||++++||++|||+++.++.+ +|+|++..+.+|||++.++|++
T Consensus 80 sP~~rGGG~a~gPkp~r~~~~klnkK~r~lAl~~aLs~k~~~~~v~~~g~~~~~~~~~iV~~~~~~~~~KTK~~~~~L~~ 159 (246)
T d1vqoc1 80 VPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEA 159 (246)
T ss_dssp STTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCSSCSEEECGGGGGCCCHHHHHHHHHT
T ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHH
T ss_conf 78747776235998852066878999999999999998512430564032024777778950443433167999999986
Q ss_pred CCCCCEEEE-----------------------ECCCCCHHHHHHHCCCCCCEEEEHHCCCHHHHEECCC----EEEEHHH
Q ss_conf 355632786-----------------------1577517899996278895684240288757100590----8984999
Q gi|254780260|r 146 LDLSNALII-----------------------DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSA 198 (207)
Q Consensus 146 l~~~~~llv-----------------------~~~~~d~n~~~s~rNi~~v~v~~~~~lnv~dll~~~~----iVit~~A 198 (207)
+++.+.+++ +..+.|+++.+|+||||+|+++++++||+||||++++ +|||++|
T Consensus 160 l~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~vl~~~~~~~~~a~rNip~v~v~~~~~lNv~dll~~~~l~r~vV~T~~A 239 (246)
T d1vqoc1 160 LDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESA 239 (246)
T ss_dssp TTCTHHHHHTSCCEECSSGGGGGTCCEECCCCCEEEESSSCCTTTTTSTTCEEEETTTCCHHHHSGGGCCCCCEEEEHHH
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCCEEEEEHHH
T ss_conf 58754305621443221200003543445554422357089999758999779867984199901668778609982999
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q gi|254780260|r 199 IEALEDR 205 (207)
Q Consensus 199 i~~l~e~ 205 (207)
++.|+||
T Consensus 240 l~~leeR 246 (246)
T d1vqoc1 240 LAEVAER 246 (246)
T ss_dssp HHHHTTC
T ss_pred HHHHHCC
T ss_conf 9998549
No 6
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=90.95 E-value=0.092 Score=27.75 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCC-CCCCCCCCCCCCCC
Q ss_conf 6899999999999727886200136212148988-76455887554236
Q gi|254780260|r 29 QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS-KMYVQKGTGRARHS 76 (207)
Q Consensus 29 ~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~k-K~~~QKGtGrAR~G 76 (207)
..-++++--...+......++..++++|++|+|+ ++|.|+++|++|..
T Consensus 32 h~~v~~~~an~Rqgt~~~k~~g~~t~a~~~g~g~~qk~tgrar~g~rrs 80 (246)
T d1vqoc1 32 GKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARRV 80 (246)
T ss_dssp HHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEETTEECSS
T ss_pred HHHHHHHHHHCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999973636757775321422111357622355777645577657
No 7
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=77.07 E-value=0.18 Score=26.14 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=20.6
Q ss_pred CCHHHCCCCCCC-CCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 621214898876-45588755423653111-01057742
Q gi|254780260|r 53 GRSEVAYTGSKM-YVQKGTGRARHSSKSVS-QFRGGGKA 89 (207)
Q Consensus 53 ~r~ev~gs~kK~-~~QKGtGrAR~Gs~rsp-~~rgGg~a 89 (207)
.|+.-+|.|+-. |-+|| ..||.|....| .|-||-+-
T Consensus 16 GRG~gsg~Gkt~GrG~kG-qkaRsG~~~~~~gFEGGQ~P 53 (146)
T d2j01p1 16 GRGPGSGHGKTATRGHKG-QKSRSGGLKDPRRFEGGRST 53 (146)
T ss_dssp CCCSCSSSSSCTTCSSCC-SSSCSSCCCCSSSCCSSSCT
T ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCC
T ss_conf 677888989669998988-88677988577321068878
No 8
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=74.50 E-value=2 Score=20.19 Aligned_cols=74 Identities=8% Similarity=0.153 Sum_probs=54.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCC
Q ss_conf 87532000015999999999878765059589951433787781899998411355632786157751789999627889
Q gi|254780260|r 93 VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172 (207)
Q Consensus 93 ~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~llv~~~~~d~n~~~s~rNi~~ 172 (207)
.|..|+.|+|+. ..+..++++|.....-..--.+.+.|++.|..+..++..-...+.+.+-..+.|+
T Consensus 109 ~p~~~y~klP~~-------------i~~~~villDPmlATG~s~~~ai~~L~~~G~~~I~~v~~iaa~~Gi~~i~~~~P~ 175 (208)
T d1i5ea_ 109 KPVEYYVKLPSD-------------VEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPD 175 (208)
T ss_dssp SCEEEEEECCTT-------------TTTSEEEEECSEESSSHHHHHHHHHHHHTTCCCEEEECSEECHHHHHHHHHHCTT
T ss_pred CCEEEEEECCCC-------------HHCCEEEEECHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCCC
T ss_conf 838876542765-------------4218689868267446669999999986799858999986157999999987959
Q ss_pred CEEEEHH
Q ss_conf 5684240
Q gi|254780260|r 173 INLLPVQ 179 (207)
Q Consensus 173 v~v~~~~ 179 (207)
+++..+.
T Consensus 176 v~I~t~~ 182 (208)
T d1i5ea_ 176 VDIYIAA 182 (208)
T ss_dssp CEEEESE
T ss_pred CEEEEEE
T ss_conf 8899999
No 9
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=73.27 E-value=2.2 Score=19.91 Aligned_cols=71 Identities=8% Similarity=0.203 Sum_probs=51.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCC
Q ss_conf 7532000015999999999878765059589951433787781-899998411355632786157751789999627889
Q gi|254780260|r 94 PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT-KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172 (207)
Q Consensus 94 pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KT-K~~~~~L~~l~~~~~llv~~~~~d~n~~~s~rNi~~ 172 (207)
|..|+.|+|+ .+.+..++++|... .++.| -.+.+.|++.+.++..++..-...+.+.+-....|+
T Consensus 110 p~~~y~klP~-------------~i~~~~vil~DPml-ATG~s~~~ai~~L~~~gv~~I~~v~~ias~~Gi~~v~~~~P~ 175 (208)
T d1v9sa1 110 PVQYYIKLPP-------------DIAERRAFLLDPML-ATGGSASLALSLLKERGATGVKLMAILAAPEGLERIAKDHPD 175 (208)
T ss_dssp --CEEEECCS-------------CGGGSCEEEECSEE-SSSHHHHHHHHHHHHTTCCSCEEEEEEECHHHHHHHHHHCTT
T ss_pred CEEEEEECCC-------------CCCCCEEEEECCHH-HCCHHHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCCC
T ss_conf 6898775586-------------53456699968245-335659999999986599846999998437899999987879
Q ss_pred CEEEEH
Q ss_conf 568424
Q gi|254780260|r 173 INLLPV 178 (207)
Q Consensus 173 v~v~~~ 178 (207)
+++..+
T Consensus 176 v~I~ta 181 (208)
T d1v9sa1 176 TEVVVA 181 (208)
T ss_dssp CEEEEE
T ss_pred CEEEEE
T ss_conf 789999
No 10
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=71.70 E-value=2 Score=20.13 Aligned_cols=73 Identities=4% Similarity=0.066 Sum_probs=52.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCC
Q ss_conf 87532000015999999999878765059589951433787781-89999841135563278615775178999962788
Q gi|254780260|r 93 VPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT-KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171 (207)
Q Consensus 93 ~pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KT-K~~~~~L~~l~~~~~llv~~~~~d~n~~~s~rNi~ 171 (207)
.|..|+.++|. ...+..++++|.. +.++.| -.+++.|+..+.++..++..-...+.+.+-....|
T Consensus 111 ~p~~yy~~lP~-------------~i~~~~vil~DPm-lATG~s~~~ai~~L~~~g~~~I~~v~~ias~~Gl~~i~~~~P 176 (210)
T d1o5oa_ 111 QAVEYYAKLPP-------------LNDDKEVFLLDPM-LATGVSSIKAIEILKENGAKKITLVALIAAPEGVEAVEKKYE 176 (210)
T ss_dssp CEEEEEEECCC-------------CCTTCEEEEECSE-ESSSHHHHHHHHHHHHTTCCEEEEECSEECHHHHHHHHHHCT
T ss_pred CCEEEHHHCCC-------------CCCCCEEEEEHHH-HHCCCCHHHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHCC
T ss_conf 70654102775-------------4358539987677-556862899999998579984899999984179999998787
Q ss_pred CCEEEEHH
Q ss_conf 95684240
Q gi|254780260|r 172 NINLLPVQ 179 (207)
Q Consensus 172 ~v~v~~~~ 179 (207)
++++..+.
T Consensus 177 ~v~I~ta~ 184 (210)
T d1o5oa_ 177 DVKIYVAA 184 (210)
T ss_dssp TCEEEESE
T ss_pred CCEEEEEE
T ss_conf 97899998
No 11
>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus solfataricus [TaxId: 2287]}
Probab=48.55 E-value=7.9 Score=16.74 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCC
Q ss_conf 7532000015999999999878765059589951433787781-899998411355632786157751789999627889
Q gi|254780260|r 94 PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT-KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172 (207)
Q Consensus 94 pr~~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KT-K~~~~~L~~l~~~~~llv~~~~~d~n~~~s~rNi~~ 172 (207)
|..|+.|+|+.. .+...++++|.... ++.| -.+.+.|++.+.++..++..-...+.+.+-..+.|+
T Consensus 118 ~~~yy~klP~~~------------~~~~~VillDPmlA-TG~s~~~ai~~L~~~g~~~I~~~~~ias~~Gi~~l~~~~P~ 184 (215)
T d1xtta1 118 VYIYYKKIPDIR------------AKVDNVIIADPMIA-TASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPF 184 (215)
T ss_dssp EEEEEEECCCCC------------TTTCEEEEECSEES-SSHHHHHHHHHHGGGCCSEEEEECSEEEHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCC------------CCCCEEEEECCHHH-CCHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHHHCCC
T ss_conf 256530177743------------44633787380573-52659999999850499779999998548999999987949
Q ss_pred CEEEEH
Q ss_conf 568424
Q gi|254780260|r 173 INLLPV 178 (207)
Q Consensus 173 v~v~~~ 178 (207)
|.+..+
T Consensus 185 v~i~ta 190 (215)
T d1xtta1 185 IYLFTV 190 (215)
T ss_dssp SEEEES
T ss_pred CEEEEE
T ss_conf 889999
No 12
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId: 5741]}
Probab=39.88 E-value=3.3 Score=18.88 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=23.1
Q ss_pred HCCCEEEEECCCCCCCCH-HHHHHHHHHCCCCC
Q ss_conf 059589951433787781-89999841135563
Q gi|254780260|r 119 CSNDIMVIDNLVSKECKT-KYLVTRFRALDLSN 150 (207)
Q Consensus 119 ~~~~l~Vvd~~~~~~~KT-K~~~~~L~~l~~~~ 150 (207)
...++++|||+. .++.| ..+.+++++.|..-
T Consensus 115 ~g~rVlIVDDvi-~TGgT~~aa~~ll~~~Ga~v 146 (181)
T d1l1qa_ 115 PHDVVLLHDDVL-ATGGTLLAAIELCETAGVKP 146 (181)
T ss_dssp TTCCEEEEEEEE-SSSHHHHHHHHHHHHTTCCG
T ss_pred CCCEEEEEHHHH-HHCHHHHHHHHHHHHCCCCE
T ss_conf 797467743566-63579999999999879956
No 13
>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine phosphoribosyltransferase PH0095 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.42 E-value=24 Score=13.96 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=26.6
Q ss_pred HHCCCEEEEECCCCCCCCH-HHHHHHHHHCCCCCEEE
Q ss_conf 5059589951433787781-89999841135563278
Q gi|254780260|r 118 FCSNDIMVIDNLVSKECKT-KYLVTRFRALDLSNALI 153 (207)
Q Consensus 118 ~~~~~l~Vvd~~~~~~~KT-K~~~~~L~~l~~~~~ll 153 (207)
+...+++||||+. +++.| +.+.+.|+..+....-+
T Consensus 81 ~~gk~VLIVDDii-~TG~Tl~~~~~~l~~~g~~~v~~ 116 (153)
T d1vdma1 81 LKDKRVVIVDDVS-DTGKTLEVVIEEVKKLGAKEIKI 116 (153)
T ss_dssp CBTCEEEEEEEEE-SSCHHHHHHHHHHHTTTBSEEEE
T ss_pred CCCCEEEEEEEEE-CCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 6899899996014-46874899998777409852789
Done!