PSIBLAST alignment of GI: 254780260 and protein with PDB id: 1vor
>gi|56966348|pdb|1VOR|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. Length = 198
>gi|56966401|pdb|1VOU|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia Coli In Complex With Protein Y. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Five 70s Ribosomes And Is Described In Remark 400. Length = 198
Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats.
Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 6/203 (2%)
Query: 2 IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
+++V +G + + + G+L V+ WQ +R G + ++ R++V+ TG
Sbjct: 2 AQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTG 55
Query: 62 SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
KMY QKGTG ARH +SV F GGG AFGP P + LP++VR L L A++ +
Sbjct: 56 RKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGG 115
Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
++ +D + KTK ++ + L + D N + AARN+ +++LPV G+
Sbjct: 116 KLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGV 175
Query: 182 NVYDILRCSKLVLSKSAIEALED 204
NVYDILR +LV+ +A+E +E+
Sbjct: 176 NVYDILRHDRLVIDAAALEIVEE 198