BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780260|ref|YP_003064673.1| 50S ribosomal protein L4
[Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|132978|sp|P28601|RL4_BACST RecName: Full=50S ribosomal protein L4; Short=BL4
 gi|40103|emb|CAA47403.1| ribosomal protein L4 [Geobacillus stearothermophilus]
          Length = 207

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 125/206 (60%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G+  G I +++ +F ++P + +L   +  Q    R G  K+K R+EV+  
Sbjct: 1   MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           NDI+V+D L  +  KTK +V     L +    +I   +L+ N  L+ARNIP + ++P  G
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVTDELNENVYLSARNIPGVKVVPANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KLV++K+A+E +E+  
Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206


>gi|56418642|ref|YP_145960.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426]
 gi|261417608|ref|YP_003251290.1| 50S ribosomal protein L4 [Geobacillus sp. Y412MC61]
 gi|297528483|ref|YP_003669758.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3]
 gi|319765266|ref|YP_004130767.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC52]
 gi|81558135|sp|Q5L3Z6|RL4_GEOKA RecName: Full=50S ribosomal protein L4
 gi|56378484|dbj|BAD74392.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426]
 gi|261374065|gb|ACX76808.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61]
 gi|297251735|gb|ADI25181.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3]
 gi|317110132|gb|ADU92624.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC52]
          Length = 207

 Score =  230 bits (587), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 124/206 (60%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G+  G I +++ +F ++P + +L   +  Q    R G  K+K R+EV+  
Sbjct: 1   MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           NDI+V+D L  +  KTK +V     L +    +I   +L+ N  L+ARNIP + ++   G
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KLV++K+A+E +E+  
Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206


>gi|196251023|ref|ZP_03149705.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16]
 gi|196209495|gb|EDY04272.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16]
          Length = 207

 Score =  229 bits (584), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 124/206 (60%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G+  G I +++ +F ++P + +L   +  Q    R G  K+K R+EV+  
Sbjct: 1   MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           NDI+V+D L  +  KTK +V     L +    +I   +L+ N  L+ARNIP + ++   G
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KLV++K+A+E +E+  
Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206


>gi|288554726|ref|YP_003426661.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4]
 gi|288545886|gb|ADC49769.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4]
          Length = 207

 Score =  229 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N  G   G I +S+ IF ++P Q +L   +  Q    R G  K+KGRSEV   
Sbjct: 1   MPKVAVFNQAGSQVGDIELSDSIFGIEPNQSVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKVR LA++ ALS K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKLKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V+DNL     KTK +      L + +  ++     +    L+ RN+P +  +  +G
Sbjct: 121 AEIVVLDNLQLDAPKTKDMANVLNGLSVDSKALVVTADYNETVALSTRNLPGVTFVTAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L+  KLV++K A+  +E+  
Sbjct: 181 VNVLDVLKHDKLVITKDAVAKVEEVL 206


>gi|15612698|ref|NP_241001.1| 50S ribosomal protein L4 [Bacillus halodurans C-125]
 gi|7674304|sp|Q9Z9L3|RL4_BACHD RecName: Full=50S ribosomal protein L4
 gi|4512405|dbj|BAA75272.1| rplD homologue (identity of 79% to B. subtilis ) [Bacillus
           halodurans]
 gi|10172747|dbj|BAB03854.1| 50S ribosomal protein L4 [Bacillus halodurans C-125]
          Length = 207

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 118/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I +S+ +F ++P + +L   +  Q    R G  K+K RSEV   
Sbjct: 1   MPKVALYNQAGSQVGDIELSDAVFGIEPNENVLHDAVVMQQASLRQGTHKTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKVR LA++ ALS K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V+++L  +  KTK + +    L +    ++     + N  L+ARNIP +  +  +G
Sbjct: 121 EEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADYNDNVALSARNIPGVTFVTAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+++  KL+++K A+E +E+  
Sbjct: 181 VNVLDVIKHDKLIITKDAVEKVEEVL 206


>gi|138893786|ref|YP_001124239.1| 50S ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2]
 gi|166234670|sp|A4IJJ0|RL4_GEOTN RecName: Full=50S ribosomal protein L4
 gi|134265299|gb|ABO65494.1| Ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2]
          Length = 207

 Score =  228 bits (582), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 124/206 (60%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G+  G I +++ +F ++P + +L   +  Q    R G  K+K R+EV+  
Sbjct: 1   MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           NDI+V+D L  +  KTK +V     L +    +I   +L+ N  L+ARNIP + ++   G
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVTDELNENVYLSARNIPGVKVVAANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KLV++K+A+E +E+  
Sbjct: 181 INVLDVLSHDKLVITKAAVEKVEEVL 206


>gi|239825694|ref|YP_002948318.1| 50S ribosomal protein L4 [Geobacillus sp. WCH70]
 gi|259491561|sp|C5D3R8|RL4_GEOSW RecName: Full=50S ribosomal protein L4
 gi|239805987|gb|ACS23052.1| ribosomal protein L4/L1e [Geobacillus sp. WCH70]
          Length = 207

 Score =  228 bits (581), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 123/206 (59%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  GE  G I +++ +F ++P + +L   +  Q    R G  K+K R+EV+  
Sbjct: 1   MPKVALYNQSGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+DNL  +  KTK +V     L +    +I    ++ N  L+ARNIP + ++   G
Sbjct: 121 NNIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTDDVNENVTLSARNIPGVTVVTANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KLV++K+A+E +E+  
Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206


>gi|295401919|ref|ZP_06811882.1| ribosomal protein L4/L1e [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109262|ref|YP_003987578.1| ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1]
 gi|294976049|gb|EFG51664.1| ribosomal protein L4/L1e [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214363|gb|ADP72967.1| ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1]
          Length = 207

 Score =  228 bits (580), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 123/206 (59%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +GE  G I +++ +F ++P + +L   +  Q    R G  K+K R+EV+  
Sbjct: 1   MPKVALYNQNGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+DNL  +  KTK +V     L +    +I     + N  L+ARNIP + ++   G
Sbjct: 121 NNIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTDVANENVALSARNIPGVTVVTANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KLV++K+A+E +E+  
Sbjct: 181 INVLDLLNHDKLVITKAAVEKVEEVL 206


>gi|317126862|ref|YP_004093144.1| ribosomal protein L4/L1e [Bacillus cellulosilyticus DSM 2522]
 gi|315471810|gb|ADU28413.1| ribosomal protein L4/L1e [Bacillus cellulosilyticus DSM 2522]
          Length = 207

 Score =  227 bits (578), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I +SE IF ++P + +L   +  Q   +R G   +KGRS+V   
Sbjct: 1   MPKVTLYNQTGSQVGDIELSEAIFGIEPNESVLFDAVVMQQASQRQGTHATKGRSDVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + +PKK R LAL+ ALS K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPQPRSYAYKIPKKQRRLALKSALSSKVNA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++I+V++ L     KTK +      L +    ++     +    L+ARNIP +  +  +G
Sbjct: 121 DEILVLEGLNFDSPKTKEMKAVLSGLSVGRKALVVTADYNDAVALSARNIPGVKFITAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L   +L++++ A++ +E+  
Sbjct: 181 VNVLDLLNYDQLIITQDAVKKVEEVL 206


>gi|56961933|ref|YP_173655.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16]
 gi|81601105|sp|Q5WLR1|RL4_BACSK RecName: Full=50S ribosomal protein L4
 gi|56908167|dbj|BAD62694.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16]
          Length = 207

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 120/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S+ N  G   G I +++++F ++P + +L   +  Q    R G  K+KGRSEV   
Sbjct: 1   MPKVSLFNQTGSQVGEIELADNVFGVEPNESVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D+L  +  KTK +     +L + +  ++     + N  L+ARN+P I  L   G
Sbjct: 121 SELVVLDDLKLEAIKTKAMKDVLASLSVDSKALVVTADYNENVALSARNLPGITFLTADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L+  KLV++K A+E +E+  
Sbjct: 181 VNVLDLLKHDKLVITKDAVEKVEEVL 206


>gi|212637955|ref|YP_002314475.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus WK1]
 gi|226730612|sp|B7GJ68|RL4_ANOFW RecName: Full=50S ribosomal protein L4
 gi|212559435|gb|ACJ32490.1| Ribosomal protein L4 [Anoxybacillus flavithermus WK1]
          Length = 207

 Score =  226 bits (576), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 123/206 (59%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +GE+ G I +++ +F ++P + +L   +  Q    R G  K+K R+EV+  
Sbjct: 1   MPKVALYNQNGENIGEIELNDAVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N I+V+DNL  +  KTK +V     L +    +I     + N  L+ARNIP + ++   G
Sbjct: 121 NSIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTADANENVILSARNIPGVTVVTASG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KLV++K+A+E +E+  
Sbjct: 181 INVLDVLNHDKLVITKAAVEKVEEVL 206


>gi|308070974|ref|YP_003872579.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681]
 gi|310644201|ref|YP_003948960.1| 50S ribosomal protein l4 [Paenibacillus polymyxa SC2]
 gi|305860253|gb|ADM72041.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681]
 gi|309249152|gb|ADO58719.1| 50S ribosomal protein L4 [Paenibacillus polymyxa SC2]
          Length = 207

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G   G I +++ +F ++P + +L   +  Q    R G  K KGRSEV   
Sbjct: 1   MPKVALFNISGSQVGEIELNDAVFGIEPNKHVLHDAVVMQLASLRQGTHKVKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGSIRAPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L     KTK        L      +I     D N  L+ARNIP +  +   G
Sbjct: 121 NEIIVLDALTLNGPKTKEFAAILNNLKADRKALIVAPSYDDNVALSARNIPGVKFVAADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KL+++K A++ +E+  
Sbjct: 181 INVLDVLGHDKLIITKEAVQKVEEVL 206


>gi|299541933|ref|ZP_07052256.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1]
 gi|298725671|gb|EFI66312.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1]
          Length = 207

 Score =  224 bits (570), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV +  G   G I +++ IF ++P + +L   +  Q    R G  K K RSEVA  
Sbjct: 1   MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + +V+D L     KTK      + L L    +     LD N  L+ARNIP + +L   G
Sbjct: 121 QNFLVLDALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   K+V +KSA+E +E+  
Sbjct: 181 INVLDLLGHDKVVFTKSAVEKVEEVL 206


>gi|319654869|ref|ZP_08008944.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2]
 gi|317393432|gb|EFV74195.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2]
          Length = 207

 Score =  224 bits (570), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 118/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I +++ IF ++P Q +L   +  Q    R G  K+K RSEVA  
Sbjct: 1   MPKVALFNQSGSKVGDIELNDAIFGIEPNQHVLFEAIVMQRASLRQGTHKTKIRSEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V++ L  +  KTK        L + +  +I    LD N  L+ARNIP + ++   G
Sbjct: 121 ENILVLEGLAFETPKTKDFKGVLTGLSVDSKALIVTADLDENVALSARNIPGVTVVSASG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I V D+L   KL+++K+A+E +E+  
Sbjct: 181 ITVLDVLNHDKLIMTKAAVEKVEEVL 206


>gi|167463901|ref|ZP_02328990.1| 50S ribosomal protein L4 [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381125|ref|ZP_08055128.1| 50S ribosomal protein L4-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154701|gb|EFX46972.1| 50S ribosomal protein L4-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 208

 Score =  223 bits (569), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G   G + +S+ +F ++P   +L   +  Q    R G  K+KGRSEV   
Sbjct: 1   MPKVALYNVQGTQVGEVELSDAVFGIEPHVHVLHEAVVMQQASLRQGTHKTKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q++GGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGSIRAPQWKGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D+L   + KTK        L +    ++   + D N   +ARNIP +  L   G
Sbjct: 121 NEIVVLDDLAMAQPKTKEFAAILTNLKVERKALVVASEHDENVARSARNIPGVKFLAADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KL+++K A++ +E+  
Sbjct: 181 INVLDVLGYDKLIITKDAVQKVEEVL 206


>gi|229917357|ref|YP_002886003.1| 50S ribosomal protein L4 [Exiguobacterium sp. AT1b]
 gi|259491559|sp|C4KZP5|RL4_EXISA RecName: Full=50S ribosomal protein L4
 gi|229468786|gb|ACQ70558.1| ribosomal protein L4/L1e [Exiguobacterium sp. AT1b]
          Length = 207

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I ++E IF ++P + +L   +  Q   +R G   +KGRSEV   
Sbjct: 1   MPKVALLNQTGSQVGEIELAEAIFGIEPNESVLYDAIVMQQASRRQGTHDTKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKVR LAL  ALS K  +
Sbjct: 61  GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALLSALSSKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V++ L     KTK +     +L +    ++     +    LAARNIP + ++   G
Sbjct: 121 NEIIVLEGLAFDAPKTKDMAAVLNSLSVERKALVVTADYNETIALAARNIPGVTVIDAAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++   K++ +K A+  +E+  
Sbjct: 181 VNVLDLVANDKVIFTKDAVAKVEEVL 206


>gi|295694838|ref|YP_003588076.1| ribosomal protein L4/L1e [Bacillus tusciae DSM 2912]
 gi|295410440|gb|ADG04932.1| ribosomal protein L4/L1e [Bacillus tusciae DSM 2912]
          Length = 207

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N  GE  G + +SE +F +  +  +L + +  Q    R G   +K R+ V   
Sbjct: 1   MPKVAVYNAAGEQVGELELSEKVFGVDVKPAVLHQAVVAQLANARQGTRATKNRALVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P      LPKK+R LA+R ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWVGGGTVFGPQPRDFSMRLPKKLRRLAIRGALSSKVSE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+L  +  KTK ++     L +    ++ G  L++   L+ARNIP +  LP   
Sbjct: 121 GSLIVLDSLQIEAPKTKEMIRILSNLKVPGKALVVGEGLNQPAHLSARNIPGVKYLPATD 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L    LV++ +A++ +E+ F
Sbjct: 181 INVVDLLHHDHLVVTTAAVKRIEEVF 206


>gi|89100348|ref|ZP_01173213.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911]
 gi|89084969|gb|EAR64105.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911]
          Length = 207

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 117/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I ++E IF ++P   +L   +  Q    R G  K+K RSEVA  
Sbjct: 1   MPKVALLNQAGSQVGEIELNETIFGIEPNNHVLFEAVVMQRASLRQGTHKTKIRSEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V++NL  +  KTK        L +    +I    LD N  L+ARNIP + ++   G
Sbjct: 121 ENILVLENLALETPKTKDFKGVLTGLSVDKKALIVTADLDENVALSARNIPGVTVVTATG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L   KL+++K+A+E +E+  
Sbjct: 181 VNVLDVLSHDKLIMTKAAVEKVEEVL 206


>gi|169830029|ref|YP_001700187.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41]
 gi|226730684|sp|B1HMX9|RL4_LYSSC RecName: Full=50S ribosomal protein L4
 gi|168994517|gb|ACA42057.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41]
          Length = 207

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV +  G   G I +++ IF ++P + +L   +  Q    R G  K K RSEVA  
Sbjct: 1   MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + +V+D L     KTK      + L L    +     LD N  L+ARNIP + +L   G
Sbjct: 121 QNFLVLDALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   K+V +KSA+E +E+  
Sbjct: 181 INVLDLLGHEKVVFTKSAVEKVEEVL 206


>gi|169830437|ref|YP_001716419.1| ribosomal protein L4/L1e [Candidatus Desulforudis audaxviator
           MP104C]
 gi|226730652|sp|B1I1I9|RL4_DESAP RecName: Full=50S ribosomal protein L4
 gi|169637281|gb|ACA58787.1| ribosomal protein L4/L1e [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 207

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M   +V N++G+  G I +SE +F       +L  V+  Q   +R G   +K RSEV   
Sbjct: 1   MPTAAVFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH +     +RGGG  FGP P    + +PKKV+ LAL+ AL+ K  +
Sbjct: 61  GRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+V+D L     KTK +      L      ++   + + N + +ARN+P +  L  + 
Sbjct: 121 GRILVLDALELPGPKTKEMARILANLKAGEGALVVTAERNVNVEKSARNLPGVKSLEARQ 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L    L++++ A+  +E+  
Sbjct: 181 LNVYDLLNHPHLIITRDAVARVEEVL 206


>gi|296131837|ref|YP_003639084.1| ribosomal protein L4/L1e [Thermincola sp. JR]
 gi|296030415|gb|ADG81183.1| ribosomal protein L4/L1e [Thermincola potens JR]
          Length = 206

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 120/206 (58%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ GE  G I + +++F ++P +G++  V+  Q   +R+G + +K R+EV+  
Sbjct: 1   MPKVALYNIKGEQVGEIELKDEVFGIEPNEGLVHDVVVMQLANRRVGTASTKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +RGGG  FGP P    + +PKK R LAL+  LS K   
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPIWRGGGITFGPKPRSFNYTMPKKARRLALKSVLSSKVSD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V+D L   + KTK +      L  +   ++    +D+N   +ARNIP +  L   G
Sbjct: 121 GNIIVLDTLEMAQPKTKEMAEILNRLK-AKKAVVVTADVDQNVIKSARNIPGVTPLTASG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD++   KLV++K A+  +E+  
Sbjct: 180 LNVYDLVNHEKLVITKDAVAKVEEVL 205


>gi|229083431|ref|ZP_04215779.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44]
 gi|228699864|gb|EEL52501.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44]
          Length = 207

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 120/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N  G   G I ++E IF ++P + +L   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ AL+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++LV    KTK +V   + L +    +I     + + +L+ARNIP + ++   G
Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLPVEKKALIVTADANESVELSARNIPGVTVITADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L   KL+++K+A+E +E+  
Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206


>gi|152973957|ref|YP_001373474.1| 50S ribosomal protein L4 [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189029490|sp|A7GK21|RL4_BACCN RecName: Full=50S ribosomal protein L4
 gi|152022709|gb|ABS20479.1| ribosomal protein L4/L1e [Bacillus cytotoxicus NVH 391-98]
          Length = 207

 Score =  221 bits (564), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 121/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N  G   G I ++E IF ++P + +L   +  Q    R G  K K RSEV+  
Sbjct: 1   MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVVMQRASLRQGTHKVKNRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ AL+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++LV    KTK +V   + L +    +I    ++   +L+ARNIP + ++   G
Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLAVEKKALIVTADVNEAVELSARNIPGVTVITADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L   KL+++K+A+E +E+  
Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206


>gi|51894209|ref|YP_076900.1| 50S ribosomal protein L4 [Symbiobacterium thermophilum IAM 14863]
 gi|81610342|sp|Q67JU4|RL4_SYMTH RecName: Full=50S ribosomal protein L4
 gi|51857898|dbj|BAD42056.1| 50S ribosomal protein L4 [Symbiobacterium thermophilum IAM 14863]
          Length = 207

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N +G   G I++S+ +F  +   G+L  V++     KR G + +K R+EV+  
Sbjct: 1   MPKVAVYNKEGATVGEITLSDAVFGAEVNPGLLHEVVQMYLANKRQGTADTKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +R GG  FGP P     ++PKK R  ALR ALS K  S
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPREYGWSMPKKARRAALRQALSAKVKS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D    +  KT+ + T  + L +  +  I   Q D N   +ARNIP + +   + 
Sbjct: 121 GELIVVDKFELEAPKTREVATLLKNLKVDGSAFIVTAQEDVNIYKSARNIPGVRVNAARN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L  SKLV ++ A+  +E+  
Sbjct: 181 LNAYDVLAASKLVFTQDAVAKVEEVL 206


>gi|172056141|ref|YP_001812601.1| 50S ribosomal protein L4 [Exiguobacterium sibiricum 255-15]
 gi|226730665|sp|B1YGV1|RL4_EXIS2 RecName: Full=50S ribosomal protein L4
 gi|171988662|gb|ACB59584.1| ribosomal protein L4/L1e [Exiguobacterium sibiricum 255-15]
          Length = 207

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I +++ +F ++P + ++   +  Q   +R G   +KGRSEV   
Sbjct: 1   MPKVALLNQTGTQVGDIELADAVFGIEPNEAVVYDAIVMQQASRRQGTHDTKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKVR LALR ALS K  +
Sbjct: 61  GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLALRSALSSKVAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+ +V++ L     KTK +++ F AL +   +++     +    L+ RNIP + ++   G
Sbjct: 121 NEFIVLEGLTIDAPKTKDMISVFAALSIERKVLVVTADYNETVVLSTRNIPGVTVVDAAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++   K++ +K A+  +E+  
Sbjct: 181 VNVLDLVAHDKVIFTKDAVARVEEVL 206


>gi|30018381|ref|NP_830012.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 14579]
 gi|30260302|ref|NP_842679.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames]
 gi|42779192|ref|NP_976439.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10987]
 gi|47525367|ref|YP_016716.1| 50S ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183145|ref|YP_026397.1| 50S ribosomal protein L4 [Bacillus anthracis str. Sterne]
 gi|49476718|ref|YP_034463.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52145106|ref|YP_081722.1| 50S ribosomal protein L4 [Bacillus cereus E33L]
 gi|118475880|ref|YP_893031.1| 50S ribosomal protein L4 [Bacillus thuringiensis str. Al Hakam]
 gi|206972278|ref|ZP_03233225.1| 50S ribosomal protein L4 [Bacillus cereus AH1134]
 gi|217957686|ref|YP_002336230.1| 50S ribosomal protein L4 [Bacillus cereus AH187]
 gi|218234634|ref|YP_002364960.1| 50S ribosomal protein L4 [Bacillus cereus B4264]
 gi|218895246|ref|YP_002443657.1| ribosomal protein L4 [Bacillus cereus G9842]
 gi|218901315|ref|YP_002449149.1| ribosomal protein L4 [Bacillus cereus AH820]
 gi|222093881|ref|YP_002527931.1| 50S ribosomal protein l4 [Bacillus cereus Q1]
 gi|225862163|ref|YP_002747541.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102]
 gi|227812784|ref|YP_002812793.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684]
 gi|228898864|ref|ZP_04063146.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222]
 gi|228905908|ref|ZP_04069805.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200]
 gi|228912850|ref|ZP_04076497.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228919061|ref|ZP_04082440.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228925364|ref|ZP_04088460.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931613|ref|ZP_04094519.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228937414|ref|ZP_04100060.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228943917|ref|ZP_04106302.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228950659|ref|ZP_04112793.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228956552|ref|ZP_04118348.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228963211|ref|ZP_04124380.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228970300|ref|ZP_04130959.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976870|ref|ZP_04137282.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
 gi|228983366|ref|ZP_04143579.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229027959|ref|ZP_04184112.1| 50S ribosomal protein L4 [Bacillus cereus AH1271]
 gi|229041016|ref|ZP_04189779.1| 50S ribosomal protein L4 [Bacillus cereus AH676]
 gi|229067876|ref|ZP_04201193.1| 50S ribosomal protein L4 [Bacillus cereus F65185]
 gi|229074172|ref|ZP_04207218.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18]
 gi|229089242|ref|ZP_04220523.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42]
 gi|229094833|ref|ZP_04225838.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29]
 gi|229100910|ref|ZP_04231714.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28]
 gi|229107797|ref|ZP_04237433.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15]
 gi|229113787|ref|ZP_04243222.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3]
 gi|229119773|ref|ZP_04249034.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201]
 gi|229125628|ref|ZP_04254660.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4]
 gi|229136957|ref|ZP_04265584.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26]
 gi|229142917|ref|ZP_04271358.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24]
 gi|229148520|ref|ZP_04276776.1| 50S ribosomal protein L4 [Bacillus cereus m1550]
 gi|229153889|ref|ZP_04282019.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342]
 gi|229159284|ref|ZP_04287308.1| 50S ribosomal protein L4 [Bacillus cereus R309803]
 gi|229170962|ref|ZP_04298563.1| 50S ribosomal protein L4 [Bacillus cereus MM3]
 gi|229176711|ref|ZP_04304115.1| 50S ribosomal protein L4 [Bacillus cereus 172560W]
 gi|229182505|ref|ZP_04309756.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1]
 gi|229188396|ref|ZP_04315444.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876]
 gi|229194501|ref|ZP_04321304.1| 50S ribosomal protein L4 [Bacillus cereus m1293]
 gi|229602888|ref|YP_002864762.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248]
 gi|254684385|ref|ZP_05148245.1| 50S ribosomal protein L4 [Bacillus anthracis str. CNEVA-9066]
 gi|254720833|ref|ZP_05182625.1| 50S ribosomal protein L4 [Bacillus anthracis str. A1055]
 gi|254733588|ref|ZP_05191308.1| 50S ribosomal protein L4 [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739508|ref|ZP_05197205.1| 50S ribosomal protein L4 [Bacillus anthracis str. Kruger B]
 gi|254751227|ref|ZP_05203265.1| 50S ribosomal protein L4 [Bacillus anthracis str. Vollum]
 gi|254756766|ref|ZP_05208795.1| 50S ribosomal protein L4 [Bacillus anthracis str. Australia 94]
 gi|296500945|ref|YP_003662645.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171]
 gi|300119577|ref|ZP_07057121.1| 50S ribosomal protein L4 [Bacillus cereus SJ1]
 gi|301051848|ref|YP_003790059.1| 50S ribosomal protein L4 [Bacillus anthracis CI]
 gi|46576767|sp|Q81J41|RL4_BACCR RecName: Full=50S ribosomal protein L4
 gi|46576769|sp|Q81VS9|RL4_BACAN RecName: Full=50S ribosomal protein L4
 gi|81570005|sp|Q73F95|RL4_BACC1 RecName: Full=50S ribosomal protein L4
 gi|81614034|sp|Q6HPQ7|RL4_BACHK RecName: Full=50S ribosomal protein L4
 gi|81689839|sp|Q63H89|RL4_BACCZ RecName: Full=50S ribosomal protein L4
 gi|166234634|sp|A0R8I1|RL4_BACAH RecName: Full=50S ribosomal protein L4
 gi|226730615|sp|B7JKC0|RL4_BACC0 RecName: Full=50S ribosomal protein L4
 gi|226730616|sp|B7IT20|RL4_BACC2 RecName: Full=50S ribosomal protein L4
 gi|226730617|sp|B7HJ49|RL4_BACC4 RecName: Full=50S ribosomal protein L4
 gi|226730618|sp|B7HQU5|RL4_BACC7 RecName: Full=50S ribosomal protein L4
 gi|254803712|sp|C3P9Q6|RL4_BACAA RecName: Full=50S ribosomal protein L4
 gi|254803713|sp|C3LJ83|RL4_BACAC RecName: Full=50S ribosomal protein L4
 gi|254803714|sp|C1ET40|RL4_BACC3 RecName: Full=50S ribosomal protein L4
 gi|254803715|sp|B9IZJ5|RL4_BACCQ RecName: Full=50S ribosomal protein L4
 gi|29893921|gb|AAP07213.1| LSU ribosomal protein L1E/L4P [Bacillus cereus ATCC 14579]
 gi|30253623|gb|AAP24165.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames]
 gi|42735107|gb|AAS39047.1| ribosomal protein L4 [Bacillus cereus ATCC 10987]
 gi|47500515|gb|AAT29191.1| ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177072|gb|AAT52448.1| ribosomal protein L4 [Bacillus anthracis str. Sterne]
 gi|49328274|gb|AAT58920.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51978575|gb|AAU20125.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus
           E33L]
 gi|118415105|gb|ABK83524.1| LSU ribosomal protein L4P [Bacillus thuringiensis str. Al Hakam]
 gi|206732852|gb|EDZ50027.1| 50S ribosomal protein L4 [Bacillus cereus AH1134]
 gi|217062939|gb|ACJ77189.1| ribosomal protein L4 [Bacillus cereus AH187]
 gi|218162591|gb|ACK62583.1| ribosomal protein L4 [Bacillus cereus B4264]
 gi|218538801|gb|ACK91199.1| ribosomal protein L4 [Bacillus cereus AH820]
 gi|218543914|gb|ACK96308.1| ribosomal protein L4 [Bacillus cereus G9842]
 gi|221237929|gb|ACM10639.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus
           Q1]
 gi|225787946|gb|ACO28163.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102]
 gi|227006772|gb|ACP16515.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684]
 gi|228588967|gb|EEK46982.1| 50S ribosomal protein L4 [Bacillus cereus m1293]
 gi|228595070|gb|EEK52841.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876]
 gi|228600960|gb|EEK58529.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1]
 gi|228606754|gb|EEK64171.1| 50S ribosomal protein L4 [Bacillus cereus 172560W]
 gi|228612502|gb|EEK69723.1| 50S ribosomal protein L4 [Bacillus cereus MM3]
 gi|228624176|gb|EEK80978.1| 50S ribosomal protein L4 [Bacillus cereus R309803]
 gi|228629570|gb|EEK86267.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342]
 gi|228634936|gb|EEK91509.1| 50S ribosomal protein L4 [Bacillus cereus m1550]
 gi|228640538|gb|EEK96927.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24]
 gi|228646495|gb|EEL02702.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26]
 gi|228657820|gb|EEL13626.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4]
 gi|228663674|gb|EEL19253.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201]
 gi|228669658|gb|EEL25065.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3]
 gi|228675646|gb|EEL30854.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15]
 gi|228682489|gb|EEL36562.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28]
 gi|228688576|gb|EEL42449.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29]
 gi|228694081|gb|EEL47763.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42]
 gi|228708942|gb|EEL61069.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18]
 gi|228715235|gb|EEL67094.1| 50S ribosomal protein L4 [Bacillus cereus F65185]
 gi|228727313|gb|EEL78507.1| 50S ribosomal protein L4 [Bacillus cereus AH676]
 gi|228733347|gb|EEL84176.1| 50S ribosomal protein L4 [Bacillus cereus AH1271]
 gi|228776356|gb|EEM24709.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228782840|gb|EEM31006.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
 gi|228789409|gb|EEM37329.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228796469|gb|EEM43908.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228803117|gb|EEM49939.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228809010|gb|EEM55495.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228815750|gb|EEM61986.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228822247|gb|EEM68229.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228828041|gb|EEM73769.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834286|gb|EEM79827.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228840586|gb|EEM85848.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228846786|gb|EEM91791.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228853723|gb|EEM98483.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200]
 gi|228860764|gb|EEN05142.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222]
 gi|229267296|gb|ACQ48933.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248]
 gi|296321997|gb|ADH04925.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171]
 gi|298723049|gb|EFI63947.1| 50S ribosomal protein L4 [Bacillus cereus SJ1]
 gi|300374017|gb|ADK02921.1| 50S ribosomal protein L4 [Bacillus cereus biovar anthracis str. CI]
 gi|324324102|gb|ADY19362.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326937906|gb|AEA13802.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 207

 Score =  221 bits (563), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 120/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N  G   G I ++E IF ++P + +L   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ AL+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++LV    KTK ++   + L +    +I     + + +L+ARNIP + ++   G
Sbjct: 121 NNIVVLEDLVLNAPKTKDMLAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L   KL+++K+A+E +E+  
Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206


>gi|163938119|ref|YP_001643003.1| 50S ribosomal protein L4 [Bacillus weihenstephanensis KBAB4]
 gi|229009620|ref|ZP_04166846.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048]
 gi|229015513|ref|ZP_04172511.1| 50S ribosomal protein L4 [Bacillus cereus AH1273]
 gi|229021722|ref|ZP_04178304.1| 50S ribosomal protein L4 [Bacillus cereus AH1272]
 gi|229053957|ref|ZP_04195391.1| 50S ribosomal protein L4 [Bacillus cereus AH603]
 gi|229131119|ref|ZP_04260031.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196]
 gi|229165099|ref|ZP_04292894.1| 50S ribosomal protein L4 [Bacillus cereus AH621]
 gi|226730619|sp|A9VP78|RL4_BACWK RecName: Full=50S ribosomal protein L4
 gi|163860316|gb|ABY41375.1| ribosomal protein L4/L1e [Bacillus weihenstephanensis KBAB4]
 gi|228618362|gb|EEK75392.1| 50S ribosomal protein L4 [Bacillus cereus AH621]
 gi|228652332|gb|EEL08257.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196]
 gi|228721375|gb|EEL72896.1| 50S ribosomal protein L4 [Bacillus cereus AH603]
 gi|228739590|gb|EEL90004.1| 50S ribosomal protein L4 [Bacillus cereus AH1272]
 gi|228745800|gb|EEL95804.1| 50S ribosomal protein L4 [Bacillus cereus AH1273]
 gi|228751642|gb|EEM01442.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048]
          Length = 207

 Score =  221 bits (563), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 120/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N  G   G I ++E IF ++P + +L   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ AL+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++LV    KTK +V   + L +    +I     + + +L+ARNIP + ++   G
Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L   KL+++K+A+E +E+  
Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206


>gi|228989320|ref|ZP_04149311.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442]
 gi|228995502|ref|ZP_04155170.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17]
 gi|229003127|ref|ZP_04160973.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4]
 gi|228758090|gb|EEM07289.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4]
 gi|228764231|gb|EEM13110.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17]
 gi|228770398|gb|EEM18971.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442]
          Length = 207

 Score =  221 bits (562), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 119/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N  G   G I ++E IF ++P + +L   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ AL+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++LV    KTK +V   + L +    +I     +   +L+ARNIP + ++   G
Sbjct: 121 NNIVVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADANEAVELSARNIPGVTVITADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L   KL+++K+A+E +E+  
Sbjct: 181 VNVLDVLHHDKLIMTKAAVEKVEEVL 206


>gi|251799641|ref|YP_003014372.1| ribosomal protein L4/L1e [Paenibacillus sp. JDR-2]
 gi|247547267|gb|ACT04286.1| ribosomal protein L4/L1e [Paenibacillus sp. JDR-2]
          Length = 207

 Score =  221 bits (562), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N+ G + G I +++ +F ++P   +L   +  Q   +R G  K+KGRSEV   
Sbjct: 1   MPKVTVFNVSGSEVGEIELADSVFGIEPNSHVLHSAVLLQQAAERAGTHKTKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P      LPKKVR LA++ ALS K  +
Sbjct: 61  GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPKKVRRLAIKSALSSKVIA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L     KTK        L      ++     D N  L+ARNIP +  +   G
Sbjct: 121 NEIVVLDQLTFAAPKTKEFAAILNNLKADRKALVVLPAYDDNVALSARNIPGVKFVAADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KL+++K A+E +++ F
Sbjct: 181 INVLDVLVHDKLIITKEAVEKVQEVF 206


>gi|327438279|dbj|BAK14644.1| ribosomal protein L4 [Solibacillus silvestris StLB046]
          Length = 207

 Score =  220 bits (561), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 118/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV +  G   G I +++ IF ++P + +L   +  Q    R G  K K RS VA  
Sbjct: 1   MTKVSVLSQTGASVGEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSAVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSAKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L+    KTK   +   AL++S   +    +++ N  L+ARNIP + +L  +G
Sbjct: 121 QNLVVLDALLFDAPKTKDFKSVLAALEISKKALFVTAEVNENAILSARNIPGVTVLTAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   K+V ++ A++ +E+  
Sbjct: 181 INVLDLLGHDKVVFTQDAVKKVEEVL 206


>gi|83594019|ref|YP_427771.1| 50S ribosomal protein L4 [Rhodospirillum rubrum ATCC 11170]
 gi|109893631|sp|Q2RQW1|RL4_RHORT RecName: Full=50S ribosomal protein L4
 gi|83576933|gb|ABC23484.1| LSU ribosomal protein L4P [Rhodospirillum rubrum ATCC 11170]
          Length = 206

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 132/206 (64%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V+ LDG+D G I +S+ +F L  +  +L R++RWQ  R++ G  K+KG SE++ T 
Sbjct: 1   MKCDVKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTG AR  SK   QFRGG   FGPV     H L KKVR L L+ ALS K  + 
Sbjct: 61  AKPFKQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D  +S+  KTK L+ + + L L   L IDG +++  F LAARNI  +++LP QG 
Sbjct: 121 QLIVLDQAISESGKTKDLLAQLKVLGLEKVLFIDGPEVNEKFALAARNIIGLDVLPQQGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K A++ LE+R +
Sbjct: 181 NVYDILRRDTLVLTKEAVKHLEERLQ 206


>gi|253577180|ref|ZP_04854500.1| 50S ribosomal protein L4/L1 [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843424|gb|EES71452.1| 50S ribosomal protein L4/L1 [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 207

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G   G + +++ +F ++P   +L   +  Q    R G  K KGRSEV   
Sbjct: 1   MPKVALFNISGSQVGEVELNDAVFGIEPNTHVLHEAVVMQRASLRFGTHKVKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q++GGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGSIRAPQWKGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            DI+V+D L     KTK        L +    ++     D N  L+ARNIP +  +   G
Sbjct: 121 QDIIVLDALAMNAPKTKEFAAILNNLKVERKALVVAPDYDDNIALSARNIPGVKFVAADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   KL+++K A++ +E+  
Sbjct: 181 INVLDVLTHDKLIITKEAVQKVEEVL 206


>gi|205372068|ref|ZP_03224885.1| 50S ribosomal protein L4 [Bacillus coahuilensis m4-4]
          Length = 207

 Score =  219 bits (559), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 121/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S+ N  G   G I +++ IF ++P Q ++   +  Q    R G  K KGRSEVA  
Sbjct: 1   MPKVSLLNQTGSQVGDIELNDSIFGIEPNQSVMFDAVIMQRASLRQGNHKVKGRSEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSTKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V+D L     KTK  V   + L L N +++    LD N  L+ARNIP + ++P  G
Sbjct: 121 ENIIVLDQLTFAAPKTKEFVAVLKNLSLDNKVLVVTDGLDENVALSARNIPGVTVVPSNG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+V D+L   KLV++K+A+E +E+  
Sbjct: 181 ISVLDVLGHDKLVMTKAAVEKVEEVL 206


>gi|229542202|ref|ZP_04431262.1| ribosomal protein L4/L1e [Bacillus coagulans 36D1]
 gi|229326622|gb|EEN92297.1| ribosomal protein L4/L1e [Bacillus coagulans 36D1]
          Length = 207

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 119/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G + +++ +F ++P + +L   +  Q    R G  K KGRSEV   
Sbjct: 1   MPKVALYNQNGSQVGEVELNDAVFGIEPNEHVLFEAIIMQRASLRQGTHKVKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L     KTK  +   + L +    ++    L+ N  L+ARNIP I ++   G
Sbjct: 121 NNILVLDALNFDAPKTKDFIAVLKNLSVDKKALVVTDGLNENVVLSARNIPGITVVEATG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++   +L+++KSA+E + +  
Sbjct: 181 VNVLDVVNHDQLIMTKSAVEKVGEVL 206


>gi|295702351|ref|YP_003595426.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319]
 gi|294800010|gb|ADF37076.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319]
          Length = 207

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 120/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +GE+ G I + + +F ++P   +L   +  Q   +R G SK K RSEV   
Sbjct: 1   MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N I+V++ L     KTK +V   + L +    ++    L+ N  L+ARNIP + ++   G
Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTADLNENVALSARNIPGVTVVAANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++   KLV++K A+E +E+  
Sbjct: 181 LSVLDVMNHDKLVITKDAVEKVEEVL 206


>gi|167036802|ref|YP_001664380.1| 50S ribosomal protein L4 [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|167039521|ref|YP_001662506.1| 50S ribosomal protein L4 [Thermoanaerobacter sp. X514]
 gi|256752633|ref|ZP_05493485.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1]
 gi|300915228|ref|ZP_07132543.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561]
 gi|307267013|ref|ZP_07548529.1| ribosomal protein L4/L1e [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307725152|ref|YP_003904903.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter sp. X513]
 gi|320115224|ref|YP_004185383.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|326390660|ref|ZP_08212215.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200]
 gi|226731436|sp|B0KCK1|RL4_THEP3 RecName: Full=50S ribosomal protein L4
 gi|226731437|sp|B0K5P4|RL4_THEPX RecName: Full=50S ribosomal protein L4
 gi|166853761|gb|ABY92170.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X514]
 gi|166855636|gb|ABY94044.1| ribosomal protein L4/L1e [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256748453|gb|EEU61505.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1]
 gi|300888952|gb|EFK84099.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561]
 gi|306917998|gb|EFN48256.1| ribosomal protein L4/L1e [Thermoanaerobacter wiegelii Rt8.B1]
 gi|307582213|gb|ADN55612.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X513]
 gi|319928315|gb|ADV79000.1| ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|325993338|gb|EGD51775.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200]
          Length = 206

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N+ GE  G I + + +F +     ++   +      +R G   +K R EV   
Sbjct: 1   MPKVAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  FGP P    + LPKKV+ LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D     + KTK +V   +  +  ++ +I   + ++N +L+ARNIP +  L    
Sbjct: 121 NEIIVLDEFKLDQPKTKKVVELLKNFN-VDSALIVVPEGEKNVELSARNIPGVKTLYANY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YDIL+  K +++K A+  +E+ +
Sbjct: 180 LNTYDILKYDKFIITKDAVGIVEEVY 205


>gi|297618383|ref|YP_003703542.1| ribosomal protein L4/L1e [Syntrophothermus lipocalidus DSM 12680]
 gi|297146220|gb|ADI02977.1| ribosomal protein L4/L1e [Syntrophothermus lipocalidus DSM 12680]
          Length = 208

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N++G   G I +S+++F ++P Q  + +V++ Q    R+G + +K R EV   
Sbjct: 1   MPKVPLYNMNGTQVGEIELSDEVFGIEPNQAAMHQVVKMQLANHRVGTAATKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S     +R GG  FGP P    + LPKK+R LAL+ ALS K   
Sbjct: 61  GRKPYRQKGTGRARAGSIRSPLWRKGGVVFGPQPRDYSYTLPKKIRRLALKSALSSKVKG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L  +  KTK +V    AL +    +I     D N   +ARNIP I  +    
Sbjct: 121 RNMIVMDELTLEAPKTKRMVEILNALQVDRKALIVTADGDVNVYKSARNIPGIKPVRADF 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++VYDIL   KLV++K A+  +E+  
Sbjct: 181 MSVYDILNHDKLVITKDAVAKVEEVL 206


>gi|294496986|ref|YP_003560686.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551]
 gi|294346923|gb|ADE67252.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551]
          Length = 207

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 120/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +GE+ G I + + +F ++P   +L   +  Q   +R G SK K RSEV   
Sbjct: 1   MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N I+V++ L     KTK +V   + L +    ++    L+ N  L+ARNIP + ++   G
Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTADLNENVALSARNIPGVTVVAANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++   KLV++K A+E +E+  
Sbjct: 181 LSVLDVMNHDKLVITKDAVEKVEEVL 206


>gi|289579144|ref|YP_003477771.1| ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9]
 gi|297545328|ref|YP_003677630.1| ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289528857|gb|ADD03209.1| ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9]
 gi|296843103|gb|ADH61619.1| ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 206

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N+ GE  G I + + +F +     ++ + +      +R G   +K R EV   
Sbjct: 1   MAKVAVYNVKGEQVGEIELKDSVFGVPVNVPVMHQAVLNYLANQRQGTHSTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  FGP P    + LPKKV+ LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D     + KTK +V   +  +  ++ +I   + ++N +L+ RNIP +  L    
Sbjct: 121 NEIIVLDEFKLDQPKTKKVVELLKNFN-VDSALIVVPEGEKNVELSTRNIPGVKTLYANY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L+  K +++K A+  +E+ +
Sbjct: 180 LNTYDVLKYDKFIITKDAVGIVEEVY 205


>gi|83591275|ref|YP_431284.1| 50S ribosomal protein L4P [Moorella thermoacetica ATCC 39073]
 gi|109893605|sp|Q2RFP8|RL4_MOOTA RecName: Full=50S ribosomal protein L4
 gi|83574189|gb|ABC20741.1| LSU ribosomal protein L4P [Moorella thermoacetica ATCC 39073]
          Length = 207

 Score =  218 bits (556), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ N+ G+  G + + + +F  +  + +L   +  Q   +R G + ++G ++V+  
Sbjct: 1   MPRVALYNIQGQQVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P    + LPKKVR LALR AL+ K   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V+D L  ++ +TK +    + L+  N  ++     + N +L+ARN+P +  L   G
Sbjct: 121 GNIIVLDELKMEKPRTKDMAHILKNLNAENKALVVTATREPNVELSARNLPGVRFLTSDG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L   KLV++K A+  +++  
Sbjct: 181 INVYDLLAHDKLVITKDAVARVQEVL 206


>gi|323703547|ref|ZP_08115193.1| ribosomal protein L4/L1e [Desulfotomaculum nigrificans DSM 574]
 gi|323531538|gb|EGB21431.1| ribosomal protein L4/L1e [Desulfotomaculum nigrificans DSM 574]
          Length = 206

 Score =  218 bits (555), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 120/206 (58%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ GE  G + + +++F ++P + ++  V+      +R G   +K R+EV   
Sbjct: 1   MPKVALYNISGEQIGEVELKDEVFGIEPNEAVMHDVVVMHLANQRQGTHDTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  FGP P    ++LPKKVR LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYSYSLPKKVRRLALKSALSSKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++I+V+D L  +  KTK +V+    L  ++  ++     D N + +ARNIP +  +   G
Sbjct: 121 DNIIVLDKLTMEVPKTKEMVSILANLK-ADKALVVTADRDINVEKSARNIPGVKPVKAGG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++VYD+L+  KLV++K A+  +E+  
Sbjct: 180 VSVYDLLKYDKLVITKDAVAKIEEVL 205


>gi|91977651|ref|YP_570310.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB5]
 gi|123762621|sp|Q134T0|RL4_RHOPS RecName: Full=50S ribosomal protein L4
 gi|91684107|gb|ABE40409.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB5]
          Length = 206

 Score =  218 bits (554), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 114/206 (55%), Positives = 148/206 (71%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G++ G + +S+ IF L+P+Q I+ R + WQ  +++ G  K+KGR+E+  TG
Sbjct: 1   MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIVQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S+ V QFRGGG+AFGPV       LPKKVR+LALRHALS K    
Sbjct: 61  KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRALALRHALSAKAKGG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID    +  KTK LV  F  L L+NALIIDG +++  F  AARNIPNI++LPVQGI
Sbjct: 121 GLIVIDKAELEAAKTKALVGAFSGLGLTNALIIDGAEVNNGFATAARNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDIVRRRKLVLTKAALDALEARFK 206


>gi|258512669|ref|YP_003186103.1| 50S ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479395|gb|ACV59714.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 206

 Score =  218 bits (554), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 83/206 (40%), Positives = 119/206 (57%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N  G+  G I ++E IF    +  ++  V+      +R G  K+K R+EV+  
Sbjct: 1   MPTVAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG   GPVP      +PKKVR  AL  ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+V++ L  +  KTK +V   R L++  ALIIDG +  +   L+ARNIPN+  +   G
Sbjct: 121 GKIVVVEGLEFERPKTKDMVGVLRNLNVEKALIIDG-EKKQPVYLSARNIPNVKYMEAAG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVY++LR   LVL+K A++ +E+ F
Sbjct: 180 LNVYELLRHDHLVLTKDAVQKVEEVF 205


>gi|260886877|ref|ZP_05898140.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC
           35185]
 gi|330839325|ref|YP_004413905.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185]
 gi|260863476|gb|EEX77976.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC
           35185]
 gi|329747089|gb|AEC00446.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185]
          Length = 207

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N   +  G I +++ +F ++   G++ + +  Q   +R+G   +K R  V   
Sbjct: 1   MPKVAVYNSANQQVGDIELNDSVFGVEMNAGLVHQAVVMQLASRRLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +PKK R LA++ ALSDK  S
Sbjct: 61  GRKPWRQKGTGRARSGSTRSPLWVGGGTVFGPQPRSYAFRMPKKQRRLAIKCALSDKVAS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D +V+D+L     KTK +V       +    +I     + N +L++RNIP +  +   G
Sbjct: 121 GDFIVLDDLQFDAPKTKSVVKMLGDFGVDAKSLIITLDENENVELSSRNIPGVKAINTMG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL  +KL ++K+AIE +E+  
Sbjct: 181 LNVYDILNHTKLFITKAAIEKIEEVL 206


>gi|218290004|ref|ZP_03494181.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1]
 gi|218239989|gb|EED07176.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1]
          Length = 206

 Score =  217 bits (553), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N  G+  G I ++E IF    +  ++  V+      +R G  K+K R+EV+  
Sbjct: 1   MPTVAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG   GPVP      +PKKVR  AL  ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+V++ L  +  KTK +V   R L++  ALI+DG +  +   L+ARNIPN+  +   G
Sbjct: 121 GKIVVVEGLEFERPKTKDMVGVLRNLNVEKALIVDG-EKKQPVYLSARNIPNVKYMEAAG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVY++LR   LVL+K A++ +E+ F
Sbjct: 180 LNVYELLRHDHLVLTKDAVQKVEEVF 205


>gi|163796918|ref|ZP_02190875.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199]
 gi|159177907|gb|EDP62456.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199]
          Length = 206

 Score =  217 bits (553), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 99/206 (48%), Positives = 129/206 (62%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V NLD E  G I + + IF L P++ ILARV+ WQ  ++R G  K+K  SE++ T 
Sbjct: 1   MKLEVTNLDAEKTGEIDLDDSIFGLDPRRDILARVVNWQLAKRRSGNHKTKSISEISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S   +QFRGG    GPV     H LPKKVR L L+ ALS K  S 
Sbjct: 61  KKPFRQKGTGRARQGSIRATQFRGGQTVHGPVVRSHAHDLPKKVRKLGLKCALSAKLKSG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D   + E KTK L  +F  L   + L+IDG +L+  F  AARNIP +++LP QG 
Sbjct: 121 QLIVLDAASTDEAKTKLLAAKFEKLGWQSVLVIDGPELNEGFARAARNIPRVDVLPQQGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL++ A+E LE R K
Sbjct: 181 NVYDILRRETLVLTRGAVEHLEARLK 206


>gi|39936312|ref|NP_948588.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009]
 gi|192292036|ref|YP_001992641.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris TIE-1]
 gi|46577158|sp|P61068|RL4_RHOPA RecName: Full=50S ribosomal protein L4; AltName: Full=RRP-L4
 gi|226730715|sp|B3QBX9|RL4_RHOPT RecName: Full=50S ribosomal protein L4
 gi|39650167|emb|CAE28690.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009]
 gi|192285785|gb|ACF02166.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris TIE-1]
          Length = 206

 Score =  217 bits (552), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 113/206 (54%), Positives = 146/206 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G++ G + +S++IF L+P+  I+ R + WQ  +++ G  K+KGR+EV  TG
Sbjct: 1   MELKVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S+ V QFRGGG+AFGPV       LPKKVR LALRHALS K    
Sbjct: 61  KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D    +  KTK LV  F  L L +ALIIDG +++  F  AARNIPNI++LPVQGI
Sbjct: 121 GLIVLDKAELEAAKTKTLVGHFSGLGLESALIIDGAEVNNGFAAAARNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRKKLVLTKAAVDALEARFK 206


>gi|260893371|ref|YP_003239468.1| ribosomal protein L4/L1e [Ammonifex degensii KC4]
 gi|260865512|gb|ACX52618.1| ribosomal protein L4/L1e [Ammonifex degensii KC4]
          Length = 207

 Score =  217 bits (552), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V NL GE  G + + E++F ++P   ++  V+      +R G   +K R EV   
Sbjct: 1   MPKATVYNLAGEPVGEMELKEEVFGIEPNPYVVHEVVVMHLANRRRGTHSTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +R GG  FGP P    + +PKKVR LAL+  LSDK  +
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPIWRKGGVVFGPKPRDYDYTVPKKVRRLALKSVLSDKLRA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V++ L  +  KTK          +   +++ G   D   +LA  N+  +  LPV  
Sbjct: 121 GNLVVLEELRLEAPKTKLAKELLSRFGVETGVLLVGADPDPVVKLATANLEGVKFLPVNN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LR  K+ +++ A+  +E+  
Sbjct: 181 LNVYDLLRYPKVFITREALARVEEVL 206


>gi|261409520|ref|YP_003245761.1| 50S ribosomal protein L4/L1e [Paenibacillus sp. Y412MC10]
 gi|329922057|ref|ZP_08277850.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF5]
 gi|261285983|gb|ACX67954.1| ribosomal protein L4/L1e [Paenibacillus sp. Y412MC10]
 gi|328942440|gb|EGG38704.1| 50S ribosomal protein L4 [Paenibacillus sp. HGF5]
          Length = 207

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G   G + ++E +F ++P   +L   +  Q    R G  K KGRSEV   
Sbjct: 1   MPKVALYNVSGSQVGEVELNEAVFGIEPNAHVLHSAVLLQRASLRRGTHKVKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q++GGG  FGP P      LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N I+V+D L     KTK        L +    +I     D N  L+ARNIP +  +   G
Sbjct: 121 NAIIVLDQLTLNTPKTKEFANILSNLKVGRKALIVAPSYDDNVALSARNIPGVKFVAADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   +L+++K A++ +E+  
Sbjct: 181 INVLDVLSYDQLIITKEAVQKVEEVL 206


>gi|315649698|ref|ZP_07902782.1| ribosomal protein L4/L1e [Paenibacillus vortex V453]
 gi|315274886|gb|EFU38262.1| ribosomal protein L4/L1e [Paenibacillus vortex V453]
          Length = 207

 Score =  216 bits (551), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G   G + ++E +F ++P   +L   +  Q    R G  K KGRSEV   
Sbjct: 1   MPKVALYNVSGSQVGEVELNEAVFGIEPNTHVLHSAVLLQRASLRRGTHKVKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q++GGG  FGP P      LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGSIRSPQWKGGGVVFGPTPRSYTFKLPKKVRRLAIKSALSSKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N I+V+D L     KTK        L +    +I     D N  L+ARNIP +  +   G
Sbjct: 121 NAIIVLDQLTLNTPKTKEFANILSNLKVGRKALIVAPSYDDNVALSARNIPGVKFVAADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   +L+++K A++ +E+  
Sbjct: 181 INVLDVLSYDQLIITKEAVQKVEEVL 206


>gi|52078610|ref|YP_077401.1| 50S ribosomal protein L4 [Bacillus licheniformis ATCC 14580]
 gi|52783972|ref|YP_089801.1| 50S ribosomal protein L4 [Bacillus licheniformis ATCC 14580]
 gi|319649115|ref|ZP_08003323.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2]
 gi|81667231|sp|Q65PA6|RL4_BACLD RecName: Full=50S ribosomal protein L4
 gi|52001821|gb|AAU21763.1| ribosomal protein L4 [Bacillus licheniformis ATCC 14580]
 gi|52346474|gb|AAU39108.1| RplD [Bacillus licheniformis ATCC 14580]
 gi|317388815|gb|EFV69634.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2]
          Length = 207

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 118/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G I +++ +F ++P + ++   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVALYNQNGSTAGDIELNDSVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+++L     KTK +    + L +    +I     +   +L+ARN+P + ++   G
Sbjct: 121 NNLIVLEDLNLDAVKTKEMAAILKGLSIEKKALIVTADANETVELSARNLPGVTVVEANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   KLV++K+A+E +E+  
Sbjct: 181 INVLDVVGHEKLVMTKAAVEKVEEVL 206


>gi|328543359|ref|YP_004303468.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1]
 gi|326413104|gb|ADZ70167.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1]
          Length = 206

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 149/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+ LDG   G I+VS++IF L+P+  ++ RV+RWQ  +++ G  K+KGRSEV+ T 
Sbjct: 1   MELEVKTLDGSAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKAKGRSEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH ++   QFRGGGKAFGPV     H LPKKVR+L L HALS K  + 
Sbjct: 61  KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPVVRDHGHDLPKKVRALGLAHALSTKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++++  + E KTK L  +F  L L +ALIIDG +LD NF LAARNIP +++LPVQGI
Sbjct: 121 SLIIVEDAKAGEAKTKALKEKFGKLGLQSALIIDGSELDANFALAARNIPAVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR + LVL+K+A+ A+E+RFK
Sbjct: 181 NVYDILRRNTLVLTKAAVSAIEERFK 206


>gi|134298094|ref|YP_001111590.1| 50S ribosomal protein L4 [Desulfotomaculum reducens MI-1]
 gi|172044220|sp|A4J112|RL4_DESRM RecName: Full=50S ribosomal protein L4
 gi|134050794|gb|ABO48765.1| LSU ribosomal protein L4P [Desulfotomaculum reducens MI-1]
          Length = 206

 Score =  216 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 118/206 (57%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N++GE  G + + +++F ++P + ++   +  Q   +R G   +K R+EV   
Sbjct: 1   MPKVALYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  FGP P     +LPKKVR LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V+D+L     KTK +V     L  ++  ++     D N + +ARNI  +  L   G
Sbjct: 121 QNIIVLDSLTMDAPKTKDMVRILGNLK-ADKALVVTATRDLNVEKSARNIEGVKPLKADG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L+ +KLV++K A+  +E+  
Sbjct: 180 VNVYDLLKYTKLVITKDAVAKIEEVL 205


>gi|304405615|ref|ZP_07387274.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9]
 gi|304345654|gb|EFM11489.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9]
          Length = 207

 Score =  216 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 117/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G   G + +++ +F ++P   +L   +  Q   +R G  K+KGRSEV   
Sbjct: 1   MPKVALYNVSGSQVGEVELADSVFGIQPNTHVLHSAVLLQQAAERRGTHKTKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P      LP+KVR LA++ ALS K  S
Sbjct: 61  GRKPWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPRKVRRLAIKSALSTKVIS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L     KTK        L ++   ++     + N  L+ARNIP +  +  +G
Sbjct: 121 NEIVVLDQLALATPKTKEFAAILNNLKVARKALVVTANYEDNVALSARNIPGVKFVAAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L+  +L+++K A+E +++  
Sbjct: 181 INVLDVLQYDRLIITKEAVEKVQEVL 206


>gi|296333114|ref|ZP_06875568.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672816|ref|YP_003864487.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296149730|gb|EFG90625.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411059|gb|ADM36177.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 207

 Score =  216 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G I ++  +F ++P + ++   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++L     KTK +    + L +    +I     +    L+ARNIP + ++   G
Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   KL+++K+A+E +E+  
Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEEVL 206


>gi|209964041|ref|YP_002296956.1| 50S ribosomal protein L4 [Rhodospirillum centenum SW]
 gi|226730714|sp|B6IRQ7|RL4_RHOCS RecName: Full=50S ribosomal protein L4
 gi|209957507|gb|ACI98143.1| ribosomal protein L4 [Rhodospirillum centenum SW]
          Length = 206

 Score =  216 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 133/206 (64%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ +V+NL+ E  G I +++++F L  +Q IL R++ WQ  ++R G  K+KG SE+A T 
Sbjct: 1   MKTTVKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S    QFRGG + FGPV     H L KKVR LAL+ ALS K    
Sbjct: 61  KKPWRQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V++   +   KTK L  + + L L++ALIIDG  LD  F  AARNIP++++LP QG 
Sbjct: 121 KLFVLEAAKADTHKTKALAAQLKTLGLTSALIIDGANLDETFVRAARNIPHLDVLPEQGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+++A+E LE R K
Sbjct: 181 NVYDILRRDVLVLTRNAVEQLEARLK 206


>gi|15925239|ref|NP_372773.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927829|ref|NP_375362.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315]
 gi|21283897|ref|NP_646985.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2]
 gi|49487031|ref|YP_044252.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650833|ref|YP_187048.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL]
 gi|82751838|ref|YP_417579.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122]
 gi|87160155|ref|YP_494838.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88196161|ref|YP_500978.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148268689|ref|YP_001247632.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH9]
 gi|150394754|ref|YP_001317429.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH1]
 gi|151222363|ref|YP_001333185.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156980564|ref|YP_001442823.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3]
 gi|221140149|ref|ZP_03564642.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253317009|ref|ZP_04840222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253729915|ref|ZP_04864080.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734342|ref|ZP_04868507.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255007029|ref|ZP_05145630.2| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257794595|ref|ZP_05643574.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781]
 gi|258408803|ref|ZP_05681087.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763]
 gi|258422402|ref|ZP_05685314.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719]
 gi|258422696|ref|ZP_05685601.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635]
 gi|258439791|ref|ZP_05690537.1| ribosomal protein L4 [Staphylococcus aureus A9299]
 gi|258442653|ref|ZP_05691213.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115]
 gi|258446648|ref|ZP_05694803.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300]
 gi|258450234|ref|ZP_05698326.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224]
 gi|258450756|ref|ZP_05698815.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948]
 gi|258455394|ref|ZP_05703354.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937]
 gi|262048513|ref|ZP_06021397.1| 50S ribosomal protein L4 [Staphylococcus aureus D30]
 gi|262052038|ref|ZP_06024249.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3]
 gi|269203882|ref|YP_003283151.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98]
 gi|282893687|ref|ZP_06301919.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117]
 gi|282917594|ref|ZP_06325346.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           D139]
 gi|282922118|ref|ZP_06329814.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765]
 gi|283767341|ref|ZP_06340256.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19]
 gi|284025275|ref|ZP_06379673.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 132]
 gi|294848782|ref|ZP_06789527.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754]
 gi|295404925|ref|ZP_06814738.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819]
 gi|296275960|ref|ZP_06858467.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MR1]
 gi|297209938|ref|ZP_06926334.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297243983|ref|ZP_06927873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796]
 gi|300910950|ref|ZP_07128400.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379433|ref|ZP_07362168.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|46577149|sp|P61058|RL4_STAAM RecName: Full=50S ribosomal protein L4
 gi|46577150|sp|P61059|RL4_STAAN RecName: Full=50S ribosomal protein L4
 gi|46577151|sp|P61060|RL4_STAAW RecName: Full=50S ribosomal protein L4
 gi|56749373|sp|Q6G772|RL4_STAAS RecName: Full=50S ribosomal protein L4
 gi|81693960|sp|Q5HDV9|RL4_STAAC RecName: Full=50S ribosomal protein L4
 gi|109893640|sp|Q2FEP0|RL4_STAA3 RecName: Full=50S ribosomal protein L4
 gi|109893641|sp|Q2YYP7|RL4_STAAB RecName: Full=50S ribosomal protein L4
 gi|122538859|sp|Q2FW07|RL4_STAA8 RecName: Full=50S ribosomal protein L4
 gi|166199911|sp|A7X5G2|RL4_STAA1 RecName: Full=50S ribosomal protein L4
 gi|172049047|sp|A6QJ91|RL4_STAAE RecName: Full=50S ribosomal protein L4
 gi|189042887|sp|A6U3X4|RL4_STAA2 RecName: Full=50S ribosomal protein L4
 gi|189042888|sp|A5IV33|RL4_STAA9 RecName: Full=50S ribosomal protein L4
 gi|13702049|dbj|BAB43341.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315]
 gi|14248022|dbj|BAB58411.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50]
 gi|21205339|dbj|BAB96033.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245474|emb|CAG43951.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285019|gb|AAW37113.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL]
 gi|82657369|emb|CAI81810.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122]
 gi|87126129|gb|ABD20643.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203719|gb|ABD31529.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741758|gb|ABQ50056.1| LSU ribosomal protein L4P [Staphylococcus aureus subsp. aureus JH9]
 gi|149947206|gb|ABR53142.1| ribosomal protein L4/L1e [Staphylococcus aureus subsp. aureus JH1]
 gi|150375163|dbj|BAF68423.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156722699|dbj|BAF79116.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3]
 gi|253726362|gb|EES95091.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727659|gb|EES96388.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788567|gb|EEV26907.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781]
 gi|257840486|gb|EEV64946.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763]
 gi|257841833|gb|EEV66270.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719]
 gi|257847107|gb|EEV71116.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635]
 gi|257847567|gb|EEV71569.1| ribosomal protein L4 [Staphylococcus aureus A9299]
 gi|257851774|gb|EEV75708.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115]
 gi|257854716|gb|EEV77664.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300]
 gi|257856326|gb|EEV79235.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224]
 gi|257861539|gb|EEV84341.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948]
 gi|257862605|gb|EEV85373.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937]
 gi|259160093|gb|EEW45126.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3]
 gi|259163371|gb|EEW47929.1| 50S ribosomal protein L4 [Staphylococcus aureus D30]
 gi|262076172|gb|ACY12145.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98]
 gi|269941838|emb|CBI50248.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TW20]
 gi|282318556|gb|EFB48914.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           D139]
 gi|282593586|gb|EFB98579.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765]
 gi|282763745|gb|EFC03873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117]
 gi|283461220|gb|EFC08304.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19]
 gi|283471471|emb|CAQ50682.1| ribosomal protein L4/L1 family [Staphylococcus aureus subsp. aureus
           ST398]
 gi|285817911|gb|ADC38398.1| 50S ribosomal protein L4 [Staphylococcus aureus 04-02981]
 gi|294824161|gb|EFG40585.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754]
 gi|294969870|gb|EFG45888.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819]
 gi|296885611|gb|EFH24548.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297178761|gb|EFH38006.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796]
 gi|298695505|gb|ADI98727.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           ED133]
 gi|300887930|gb|EFK83125.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302333885|gb|ADL24078.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302752122|gb|ADL66299.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304341965|gb|EFM07869.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312830598|emb|CBX35440.1| 50S ribosomal protein L4 (BL4) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315129671|gb|EFT85662.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315198221|gb|EFU28552.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140213|gb|EFW32072.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143483|gb|EFW35264.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440071|gb|EGA97786.1| 50S ribosomal protein L4 [Staphylococcus aureus O11]
 gi|323442745|gb|EGB00371.1| 50S ribosomal protein L4 [Staphylococcus aureus O46]
 gi|329314932|gb|AEB89345.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723693|gb|EGG60222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           21172]
 gi|329730071|gb|EGG66461.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           21193]
 gi|329732021|gb|EGG68376.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           21189]
          Length = 207

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  LDG   G I +S+ +F ++P   +L   +  Q    R G    K RS V+  
Sbjct: 1   MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V+D    +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     LV++++A + +E+  
Sbjct: 181 LNVLDITNADSLVITEAAAKKVEEVL 206


>gi|16077185|ref|NP_387998.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307929|ref|ZP_03589776.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221312250|ref|ZP_03594055.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317184|ref|ZP_03598478.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221321447|ref|ZP_03602741.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|321313788|ref|YP_004206075.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5]
 gi|1173050|sp|P42921|RL4_BACSU RecName: Full=50S ribosomal protein L4
 gi|786154|dbj|BAA08832.1| ribosomal protein L4 [Bacillus subtilis]
 gi|1165304|gb|AAC45957.1| L4 [Bacillus subtilis]
 gi|2632384|emb|CAB11893.1| ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482490|dbj|BAI83565.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. natto BEST195]
 gi|320020062|gb|ADV95048.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5]
          Length = 207

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G I ++  +F ++P + ++   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++L     KTK +    + L +    +I     +    L+ARNIP + ++   G
Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   KL+++K+A+E +E+  
Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEEVL 206


>gi|255659504|ref|ZP_05404913.1| ribosomal protein L4/L1 family protein [Mitsuokella multacida DSM
           20544]
 gi|260848056|gb|EEX68063.1| ribosomal protein L4/L1 family protein [Mitsuokella multacida DSM
           20544]
          Length = 207

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V ++     G I +++ IF ++   G+L + +  Q   +R+G   +K R  V   
Sbjct: 1   MATVAVYDITNNQVGDIELNDSIFGVEMNAGLLHQAVVMQLAAQRLGTHATKTRGFVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P     ++P+K R LAL+ ALSDK  S
Sbjct: 61  GRKPWKQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYAFSMPRKQRRLALKCALSDKVKS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+++L     KTK +V       + +  +        N + +ARNIP    +   G
Sbjct: 121 GDLIVLESLDFDAPKTKQVVKMLGDFGVDSKALFITADEAENVEKSARNIPGAKAIQALG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   KL ++K AI  +E+ F
Sbjct: 181 LNVYDILHHDKLFITKDAITRIEEVF 206


>gi|167629468|ref|YP_001679967.1| 50S ribosomal protein l4 [Heliobacterium modesticaldum Ice1]
 gi|226730671|sp|B0TC57|RL4_HELMI RecName: Full=50S ribosomal protein L4
 gi|167592208|gb|ABZ83956.1| 50S ribosomal protein l4 [Heliobacterium modesticaldum Ice1]
          Length = 207

 Score =  215 bits (548), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G I +++ IF ++P + ++ + +  Q    R G  K K R EV+  
Sbjct: 1   MPKVALYNTEGAQVGEIELNDAIFGIEPNEAVMHQAVVTQLAAWRRGTHKVKSRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     +RGG   FGP P     A+PKKVR LAL+ ALSDK  S
Sbjct: 61  GKKPWRQKGTGRARAGTSRSPLWRGGAIIFGPQPRSYKIAMPKKVRRLALKSALSDKVRS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK +      L +    ++    +D     +ARNIP ++ +   G
Sbjct: 121 GNLIVVDALEMDAPKTKVIAGILNKLKVERKALLVTADIDETVFKSARNIPGVSPVEAVG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL   KLV++K+A+  +E+ F
Sbjct: 181 INVYDILNHDKLVITKNAVAKVEEVF 206


>gi|86749416|ref|YP_485912.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris HaA2]
 gi|109893629|sp|Q2IXQ9|RL4_RHOP2 RecName: Full=50S ribosomal protein L4
 gi|86572444|gb|ABD07001.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris HaA2]
          Length = 206

 Score =  215 bits (547), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 113/206 (54%), Positives = 147/206 (71%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G++ G + +S+ IF L+P+  I+ R + WQ  +++ G  K+KGR+EV  TG
Sbjct: 1   MELKVTTLEGQEAGSVQLSDAIFGLEPRNDIVQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S+ V QFRGGG+AFGPV       LPKKVR+LALRHALS K    
Sbjct: 61  KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRALALRHALSAKAKGG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID    +  KTK LV  F  L L+NALIIDG +++  F  AARNIPNI++LP+QGI
Sbjct: 121 GLIVIDKAELEAAKTKALVGAFSGLGLTNALIIDGAEVNTGFATAARNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDIVRRRKLVLTKAALDALEARFK 206


>gi|209884814|ref|YP_002288671.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5]
 gi|226730700|sp|B6JET4|RL4_OLICO RecName: Full=50S ribosomal protein L4
 gi|209873010|gb|ACI92806.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5]
          Length = 206

 Score =  215 bits (547), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/206 (53%), Positives = 151/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V  L+G+  G +++S+ IF L+P+  I+ RV+ WQ  +++ G  K+KGR+E+A TG
Sbjct: 1   MELNVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S  V QFRGGG+AFGPV     + LPKKVR+L LRHALS K    
Sbjct: 61  KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLRHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   K+ KTK L+  F  L L++ALI+DG +++  F  AARNIP+I++LP+QGI
Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLTSALIVDGAEVNNGFAQAARNIPHIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206


>gi|316933528|ref|YP_004108510.1| 50S ribosomal protein L4/L1e [Rhodopseudomonas palustris DX-1]
 gi|315601242|gb|ADU43777.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris DX-1]
          Length = 206

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/206 (53%), Positives = 145/206 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G + G + +S++IF L+P+  I+ R + WQ  +++ G  K+KGR+EV  TG
Sbjct: 1   MELKVTTLEGNEAGSVQLSDEIFGLEPRTDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S+ V QFRGGG+AFGPV       LPKKVR LALRHALS K    
Sbjct: 61  KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D    +  KTK LV  F  L L +ALI+DG +++  F  AARNIPNI++LP+QGI
Sbjct: 121 GLIVLDKAELEAAKTKTLVGHFSGLGLESALIVDGAEVNTGFAAAARNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRKKLVLTKAAVDALEARFK 206


>gi|49484465|ref|YP_041689.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257423734|ref|ZP_05600163.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426412|ref|ZP_05602814.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429051|ref|ZP_05605438.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434658|ref|ZP_05610709.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           M876]
 gi|282902152|ref|ZP_06310045.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906592|ref|ZP_06314440.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909562|ref|ZP_06317373.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911809|ref|ZP_06319605.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282915098|ref|ZP_06322875.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899]
 gi|282920824|ref|ZP_06328542.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           C427]
 gi|282925729|ref|ZP_06333377.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           C101]
 gi|283959027|ref|ZP_06376468.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293497502|ref|ZP_06665356.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511077|ref|ZP_06669774.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           M809]
 gi|293549683|ref|ZP_06672355.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015]
 gi|295428832|ref|ZP_06821456.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297589682|ref|ZP_06948323.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus MN8]
 gi|56749402|sp|Q6GEI4|RL4_STAAR RecName: Full=50S ribosomal protein L4
 gi|49242594|emb|CAG41315.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272752|gb|EEV04854.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276043|gb|EEV07494.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279532|gb|EEV10119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257285254|gb|EEV15370.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312558|gb|EFB42962.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           C101]
 gi|282315239|gb|EFB45623.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           C427]
 gi|282320819|gb|EFB51153.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899]
 gi|282323505|gb|EFB53821.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326541|gb|EFB56843.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329491|gb|EFB59012.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596611|gb|EFC01570.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus C160]
 gi|283788619|gb|EFC27446.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290918730|gb|EFD95806.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015]
 gi|291096433|gb|EFE26691.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466064|gb|EFF08593.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           M809]
 gi|295127181|gb|EFG56823.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297578193|gb|EFH96906.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437340|gb|ADQ76411.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315193501|gb|EFU23897.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 207

 Score =  214 bits (546), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  LDG   G I +S+ +F ++P   +L   +  Q    R G    K RS V+  
Sbjct: 1   MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V+D    +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     LV++++A + +E+  
Sbjct: 181 LNVLDITNADSLVITEAAAKKVEEVL 206


>gi|115525584|ref|YP_782495.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisA53]
 gi|122295409|sp|Q07KL9|RL4_RHOP5 RecName: Full=50S ribosomal protein L4
 gi|115519531|gb|ABJ07515.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisA53]
          Length = 206

 Score =  214 bits (545), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 147/206 (71%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G+D G + +S++IF L P+  I+ R + WQ  +++ G  K+KGR+E+  TG
Sbjct: 1   MELKVTTLEGKDAGSVQLSDEIFGLDPRSDIIQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S+ V QFRGGG+AFGPV       LPKKVR++AL+HALS K    
Sbjct: 61  KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRAMALKHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID       KTK LV  F  L L++ALIIDG +L+  F +AARNIPNI++LP+QGI
Sbjct: 121 GLIVIDQATLDSAKTKALVGHFAGLGLTSALIIDGAELNNGFAVAARNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206


>gi|90424936|ref|YP_533306.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB18]
 gi|109893630|sp|Q211E9|RL4_RHOPB RecName: Full=50S ribosomal protein L4
 gi|90106950|gb|ABD88987.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB18]
          Length = 206

 Score =  214 bits (544), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 149/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G++ G + +S++IF L P+  I+ R + WQ  +++ G  K+KGR+EV  TG
Sbjct: 1   MELKVTTLEGKEAGSVQLSDEIFGLDPRVDIIQRCVNWQLAKRQAGTHKAKGRAEVWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S+ V QFRGGG+AFGPV       LPKKVR+LAL+HALS K    
Sbjct: 61  KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VI++   +  KTK LV  F  L L++ALIIDG +L+  F +AARNIPNI++LP+QGI
Sbjct: 121 GLIVIESATLEAAKTKALVGHFSGLGLTSALIIDGAELNNGFAVAARNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206


>gi|121534760|ref|ZP_01666581.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1]
 gi|121306780|gb|EAX47701.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1]
          Length = 208

 Score =  214 bits (544), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V ++ G   G I +S+ +F ++  + +L + +  Q   +R+G   +K R  V   
Sbjct: 1   MPKVAVYDITGAQTGEIELSDSVFGVEVNKAVLHQAVVMQLANQRLGTHATKTRGMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P     ++P+K R LAL+ ALS K  S
Sbjct: 61  GKKPWRQKGTGRARAGSIRSPLWVGGGTVFGPQPRSYAISMPRKARRLALKSALSAKVQS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++V+++    E KTK +V          +  +I   + D N   +ARNIP +  +   
Sbjct: 121 GEMVVLEDFTFAEPKTKNVVKMLDNLKVADDKALIILSEADENVIKSARNIPGVKAIAST 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           GINVYD+L   K++++K A+  +E+  
Sbjct: 181 GINVYDLLYHDKVLVTKGAVARIEEVL 207


>gi|20808659|ref|NP_623830.1| 50S ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4]
 gi|46577279|sp|Q8R7V5|RL4_THETN RecName: Full=50S ribosomal protein L4
 gi|20517293|gb|AAM25434.1| Ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4]
          Length = 206

 Score =  214 bits (544), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N+ GE  G I + + +F +     ++ + +      +R G   +K R EV   
Sbjct: 1   MPKVPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  FGP P    + LPKKV+ LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D    ++ KTK +    +  + + + +I   Q ++N +L+ARN+PN   L    
Sbjct: 121 NEIIVLDEFKLEQPKTKKVAELLKNFN-AKSALIVVPQGEKNVELSARNMPNAKALYANL 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L+  K +++K A+  +E+ F
Sbjct: 180 LNTYDVLKYEKFIITKDAVAIVEEVF 205


>gi|257431697|ref|ZP_05608060.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257282576|gb|EEV12708.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           E1410]
          Length = 207

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  LDG   G I +S+ +F ++P   +L   +  Q    R G    K RS V+  
Sbjct: 1   MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + ++D    +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NGLTLVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     LV++++A + +E+  
Sbjct: 181 LNVLDITNADSLVITEAAAKKVEEVL 206


>gi|161511095|ref|NP_772039.2| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110]
 gi|46577249|sp|Q89J85|RL4_BRAJA RecName: Full=50S ribosomal protein L4
          Length = 206

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 115/206 (55%), Positives = 150/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G++ G + +S+ IF L+P+Q I+AR ++WQ  +++ G  K+KGR+E+  TG
Sbjct: 1   MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S  V QFRGGG+AFGPV       LPKKVR+LAL+HALS K    
Sbjct: 61  KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VID    +  KTK L+  F  L L+NALIIDG +L+  F  AARNIPN+++LP+QGI
Sbjct: 121 DLLVIDKAALEAAKTKALLGHFSGLGLTNALIIDGAELNNGFAAAARNIPNMDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+AI+ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206


>gi|299135256|ref|ZP_07028447.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2]
 gi|298590233|gb|EFI50437.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2]
          Length = 206

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 113/206 (54%), Positives = 152/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V  L+G+  G +++S++IF L+P++ I+ RV+ WQ  +++ G  K+KGR+EV  TG
Sbjct: 1   MELNVTTLEGKAAGSVNLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKAKGRAEVWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S  V QFRGGG+AFGPV     H LPKKVR+L LRHALS K    
Sbjct: 61  KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VIDN   K+ KTK L+  F  L L++ALI+DG +++  F  AARNIP+I++LP+QGI
Sbjct: 121 GLVVIDNAELKDAKTKALIAHFSGLGLTSALIVDGAEVNNGFAQAARNIPHIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206


>gi|114567840|ref|YP_754994.1| 50S ribosomal protein L4/L1e [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122317285|sp|Q0AUI1|RL4_SYNWW RecName: Full=50S ribosomal protein L4
 gi|114338775|gb|ABI69623.1| LSU ribosomal protein L4P [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 207

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 118/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ ++ G   G I +++ +F +KP Q ++   ++ Q   KR G + SK R+EV   
Sbjct: 1   MPKVALYDMSGAQVGEIELNDSVFGIKPNQAVMFDFVKMQLANKRAGTASSKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +  GG AFGP P    + LP+KVR LA++ ALS K   
Sbjct: 61  GKKPWRQKGTGRARVGSSRNPVWTKGGVAFGPRPRDFSYRLPRKVRRLAMKSALSSKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D+L   E KT+ +V   ++L +    ++     D N   +ARNIP +  L    
Sbjct: 121 NNIVVLDSLTFDEPKTRLMVQTLKSLPVGKKTLVVTAYGDPNVIKSARNIPGVKPLRADF 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L    L++++ A+  +E+ F
Sbjct: 181 INVYDLLNYDTLLITREAVARIEEVF 206


>gi|89053075|ref|YP_508526.1| 50S ribosomal protein L4 [Jannaschia sp. CCS1]
 gi|109893599|sp|Q28UW1|RL4_JANSC RecName: Full=50S ribosomal protein L4
 gi|88862624|gb|ABD53501.1| LSU ribosomal protein L4P [Jannaschia sp. CCS1]
          Length = 206

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 126/206 (61%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V  LDG+  G + + E +F L+P+  IL RV+RWQ    + G  K K R EV+Y+ 
Sbjct: 1   MKVDVIKLDGKKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRREVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GP P    H L KK R L LRHALS K    
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKAAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VI+++   E KT  L  + + +    ALIIDG  +D NF  AARNI  +++LP  G 
Sbjct: 121 RLVVIESIAMDEAKTSALAKQVKEMGWKRALIIDGSDVDANFAQAARNIEGLDVLPTMGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206


>gi|295398289|ref|ZP_06808331.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC
           11563]
 gi|294973428|gb|EFG49213.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC
           11563]
          Length = 207

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 123/206 (59%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I++++++FA++P +  +  V+  Q    R G  K KGRSEV+  
Sbjct: 1   MANITLFKQDGSQAGEITLNDEVFAIEPNENAIYDVVIMQQASLRQGTHKVKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG+AFGP P    + LP+KVR LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWVGGGRAFGPTPRSYAYKLPRKVRRLALRSALSTKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+ +V+D L  +  KTK        L + N +++   + + N QL+ARN+PN+ ++    
Sbjct: 121 NNFIVVDELAFETPKTKLFQEVLNNLQVENKVLVVINKDNDNAQLSARNLPNVKVVDENN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV+D++   K++++K+A+  +E+  
Sbjct: 181 VNVFDLVNSEKVIITKAALSNVEEVL 206


>gi|217976766|ref|YP_002360913.1| 50S ribosomal protein L4 [Methylocella silvestris BL2]
 gi|254803745|sp|B8ELG2|RL4_METSB RecName: Full=50S ribosomal protein L4
 gi|217502142|gb|ACK49551.1| ribosomal protein L4/L1e [Methylocella silvestris BL2]
          Length = 206

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 150/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ + +L+G+  G I + + IF L+P+Q ++AR++R+Q  ++R G  K+KGR+E+A TG
Sbjct: 1   MKIDITSLNGDSAGSIDLDDSIFGLEPRQDLIARMVRYQLAKRRAGTHKTKGRAEIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH S  V QFRGGG+AFGPV     H LPKKVR+LAL+HALS K    
Sbjct: 61  KKLYKQKGTGSARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALKHALSAKAQGG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+V  +  + + KTK L   F    L +ALIIDG ++++NF LAARNIP I++LPVQGI
Sbjct: 121 GIIVWSDASATDAKTKALKASFAKAGLLSALIIDGAEVEQNFALAARNIPQIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+++AI+ALE RFK
Sbjct: 181 NVYDILRREKLVLTRAAIDALEARFK 206


>gi|323141357|ref|ZP_08076248.1| 50S ribosomal protein L4 [Phascolarctobacterium sp. YIT 12067]
 gi|322414106|gb|EFY04934.1| 50S ribosomal protein L4 [Phascolarctobacterium sp. YIT 12067]
          Length = 211

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LSV +L G   G I +++ +F  +  + ++ + +  Q   +R G S +K R+ V   
Sbjct: 4   MPKLSVYDLSGAQTGEIELNDSVFGAEFNEAVVHQAVVMQLANQRQGTSATKTRAMVRGG 63

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LAL  ALS K  +
Sbjct: 64  GRKPWKQKGTGRARCGSNRSPVWVGGGTTFGPQPRSYAKKMPRKARRLALCCALSAKVAA 123

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++V++ L     KTK + +  +A + +    ++     + N  L+ARN+P +  +   
Sbjct: 124 GELVVVEGLAFDAPKTKQVASLLKAFEAVDTKALLITDGSNENVALSARNMPKVTTITNM 183

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N +DIL   K+ L+K A+E +E+  
Sbjct: 184 GLNCFDILNSKKVFLAKDAVEKIEEVL 210


>gi|158424177|ref|YP_001525469.1| 50S ribosomal protein L4 [Azorhizobium caulinodans ORS 571]
 gi|158331066|dbj|BAF88551.1| ribosomal protein L4/L1e [Azorhizobium caulinodans ORS 571]
          Length = 207

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 107/207 (51%), Positives = 147/207 (71%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+EL+V+ LDG + G I +S+ IF L+P+  IL R++ WQ  R++ G  ++KGRSE+  T
Sbjct: 1   MMELTVKTLDGAEAGSIQLSDAIFGLEPRADILHRMVTWQLARRQAGTHRTKGRSEINRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTG ARH + S  QFRGGG+AFGPV       LPKKVR+LAL+HALS K  +
Sbjct: 61  SKKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSSKAKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+V+D     + KTK L  RF  L +++ L++DG Q+  NF LAARN+ ++++LPVQG
Sbjct: 121 EQIIVLDAATLTDAKTKALKERFEKLGIASVLVVDGEQVATNFALAARNLASVDVLPVQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           INVYDILR   LVL+++A++ALE RFK
Sbjct: 181 INVYDILRRDTLVLTRAAVDALEARFK 207


>gi|170738702|ref|YP_001767357.1| 50S ribosomal protein L4 [Methylobacterium sp. 4-46]
 gi|226730694|sp|B0UHW8|RL4_METS4 RecName: Full=50S ribosomal protein L4
 gi|168192976|gb|ACA14923.1| ribosomal protein L4/L1e [Methylobacterium sp. 4-46]
          Length = 206

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 110/206 (53%), Positives = 147/206 (71%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  +  LDG + G + V+E IF L+P+  +L R +RWQ  +++ G  K K RSE++ T 
Sbjct: 1   MKFEITTLDGGEAGSVEVNEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH + S  QFRGG +AFGPV     H LPKKVR+LALRHALS K  + 
Sbjct: 61  KKMYKQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKARAA 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D++  ++ KTK L  RF AL  SNALII G ++D NF  AARN+P+I++LPVQGI
Sbjct: 121 SLVVVDDVRLEDGKTKALKDRFGALGWSNALIIGGAEVDENFGRAARNLPSIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+++A++ALE RFK
Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARFK 206


>gi|157690901|ref|YP_001485363.1| 50S ribosomal protein L4 [Bacillus pumilus SAFR-032]
 gi|194017590|ref|ZP_03056201.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061]
 gi|166990946|sp|A8F986|RL4_BACP2 RecName: Full=50S ribosomal protein L4
 gi|157679659|gb|ABV60803.1| ribosomal protein L4 [Bacillus pumilus SAFR-032]
 gi|194010862|gb|EDW20433.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061]
          Length = 207

 Score =  213 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 114/204 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G I ++  +F ++P + ++   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++L     KTK      + L +    +I     +    L+ARNIP + ++   G
Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADANETVALSARNIPGVTVVEANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           INV D++   KL+++K+A+E +E+
Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEE 204


>gi|328725484|ref|XP_003248496.1| PREDICTED: 50S ribosomal protein L4-like [Acyrthosiphon pisum]
          Length = 267

 Score =  213 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V  +DG   G I +++ +F ++P Q +L   +  Q    R G    K RS V   
Sbjct: 61  MANIDVLKVDGSKSGSIELNDSVFGIEPNQHVLFEAVNLQRASLRQGTHAVKNRSAVRGG 120

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 121 GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSSKVSG 180

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++ V++       KTK        L+LS  ++     +D N +L+ARNIP + ++  Q 
Sbjct: 181 NELTVLEAFNFDAPKTKEFKNVMSNLELSKKVLFIVDTVDSNVELSARNIPGVKVIDAQS 240

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DIL  SK+V++K+A++ +E+  
Sbjct: 241 LNVLDILDSSKVVITKAAVDKVEEVL 266


>gi|307244773|ref|ZP_07526874.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis
           DSM 17678]
 gi|306491871|gb|EFM63923.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis
           DSM 17678]
          Length = 207

 Score =  213 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 120/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N+ G++ G I +++ IF ++    +L   ++ Q   KR G   +K R+EV   
Sbjct: 1   MPKINVLNVSGQNVGEIELNDSIFNIEVNAHVLYEAVKCQLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P    ++LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L  +  KTK +V  F+ L+ +  +++   + D N   + RNI   N+  V  
Sbjct: 121 NEIIVLDALSLEAPKTKEMVNTFKNLNAAKKVLVVTAENDANIVKSVRNIEGANVCHVST 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL C   +++  A++ +E+ +
Sbjct: 181 LNVYDILNCDSFIITTDAVKKVEEVY 206


>gi|323136087|ref|ZP_08071170.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242]
 gi|322399178|gb|EFY01697.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242]
          Length = 206

 Score =  213 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 102/206 (49%), Positives = 137/206 (66%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V + DG+  G I +S+D+F L+P+  ++ R++RWQ  ++R G    K R+++A TG
Sbjct: 1   MKIDVTSFDGQAAGSIELSDDVFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S    QFRGGG+AFGP      H LPKKVR LAL+HALS K    
Sbjct: 61  KKMYKQKGTGGARHGSGRAPQFRGGGRAFGPQVRSHEHDLPKKVRQLALKHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+V +     E KTK L   F    L+NA+II G     NF LAARNIP I++LPV+G+
Sbjct: 121 GIIVWEKAELAEPKTKILAGGFAKSGLNNAIIIVGGAPQANFALAARNIPQIDVLPVEGV 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVL+++A++ALE R K
Sbjct: 181 NVYDIIRREKLVLTRAAVDALEARLK 206


>gi|297582451|ref|YP_003698231.1| 50S ribosomal protein L4/L1e [Bacillus selenitireducens MLS10]
 gi|297140908|gb|ADH97665.1| ribosomal protein L4/L1e [Bacillus selenitireducens MLS10]
          Length = 207

 Score =  213 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I +++ +F ++P + ++   +  Q    R G    KGRS+V   
Sbjct: 1   MPKVNLYNQTGSQAGDIELNDAVFGIEPNESVVYDAIIMQQASMRQGTHAVKGRSDVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH +     + GGG  FGP P    + +PKK R LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARHGTNRSPIWVGGGVVFGPTPRSYAYNMPKKQRRLALKSALSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V++ L     KTK +     AL     +++     + N  L+ARN+PN+  +  +G
Sbjct: 121 DAIYVMEGLSFDAPKTKEMKKVLEALSAGKKVLVVTADYEDNVALSARNLPNVKFVTAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++    LV+++ A++ +E+  
Sbjct: 181 VNVLDLVNFESLVITQDAVKQVEEVL 206


>gi|164686528|ref|ZP_02210556.1| hypothetical protein CLOBAR_00095 [Clostridium bartlettii DSM
           16795]
 gi|164604397|gb|EDQ97862.1| hypothetical protein CLOBAR_00095 [Clostridium bartlettii DSM
           16795]
          Length = 207

 Score =  213 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 118/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L+V N+ G++ G I +S+ +F ++  + +L  V++ Q   KR G   +K R+EV   
Sbjct: 1   MPKLNVLNIQGQNVGEIELSDAVFGVEVNEHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P    + LPKKVR LA++ AL+ K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRAVQWIGGGVAFAPKPRSYRYTLPKKVRRLAMKSALTSKVQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L     KTK   T    ++ +   ++   + + N   +A NIPN+    V  
Sbjct: 121 NEMIVLDALTMDAPKTKEFATILNNVNAAKKALVVMAEKNENVIKSAANIPNVETALVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+    +++  A++ +E+ +
Sbjct: 181 INVYDILKYDSFIITTDAVKKVEEVY 206


>gi|154684635|ref|YP_001419796.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens FZB42]
 gi|308172008|ref|YP_003918713.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7]
 gi|166234633|sp|A7Z0N9|RL4_BACA2 RecName: Full=50S ribosomal protein L4
 gi|154350486|gb|ABS72565.1| RplD [Bacillus amyloliquefaciens FZB42]
 gi|307604872|emb|CBI41243.1| ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7]
 gi|328551818|gb|AEB22310.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens TA208]
          Length = 207

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G I ++  +F ++P + ++   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++L     KTK +    + L +    +I     +    L+ARNIP + ++   G
Sbjct: 121 NNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADANEAVSLSARNIPGVTVVQANG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   KL+++K+A+E +E+  
Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEEVL 206


>gi|27353674|dbj|BAC50664.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110]
          Length = 220

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 115/206 (55%), Positives = 150/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G++ G + +S+ IF L+P+Q I+AR ++WQ  +++ G  K+KGR+E+  TG
Sbjct: 15  MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 74

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S  V QFRGGG+AFGPV       LPKKVR+LAL+HALS K    
Sbjct: 75  KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 134

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VID    +  KTK L+  F  L L+NALIIDG +L+  F  AARNIPN+++LP+QGI
Sbjct: 135 DLLVIDKAALEAAKTKALLGHFSGLGLTNALIIDGAELNNGFAAAARNIPNMDVLPIQGI 194

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+AI+ALE RFK
Sbjct: 195 NVYDILRRQKLVLTKAAIDALEARFK 220


>gi|23097575|ref|NP_691041.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831]
 gi|46577267|sp|Q8ETY1|RL4_OCEIH RecName: Full=50S ribosomal protein L4
 gi|22775798|dbj|BAC12076.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831]
          Length = 207

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG + G I +++ +F ++P   +L   +  Q    R G    K RSEV   
Sbjct: 1   MPKVALLKQDGSNVGDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKVR LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++N+     KTK +V   + L +    +I   + D     +A N+ N+ +L V+ 
Sbjct: 121 ESLLVLENISIDAPKTKEIVNILKGLQVDAKALIVLSEKDETVIRSANNLQNVTVLTVEE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+ D+L   KL+++K A E   +  
Sbjct: 181 LNILDLLMHDKLIITKDAAEKAGEVL 206


>gi|110634029|ref|YP_674237.1| 50S ribosomal protein L4 [Mesorhizobium sp. BNC1]
 gi|123057912|sp|Q11HQ3|RL4_MESSB RecName: Full=50S ribosomal protein L4
 gi|110285013|gb|ABG63072.1| LSU ribosomal protein L4P [Chelativorans sp. BNC1]
          Length = 206

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 155/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  L G+D G + VS++IF L P++ IL RV+RWQ  +++ G  K+KGR+E+A TG
Sbjct: 1   MDLKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARHSS    QFRGGGKA GPVP    H LPKKVR+L L+HALS K  S 
Sbjct: 61  AKMYRQKGTGRARHSSARAPQFRGGGKAHGPVPHSHAHDLPKKVRALGLKHALSAKAKSA 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D+L  KE KTK LV  F  L ++NAL+I G ++D  F+ AA NIPNI++LP+QGI
Sbjct: 121 NLIIVDDLAIKEAKTKALVESFAKLGVTNALMIGGAEIDAGFKRAAANIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206


>gi|220921900|ref|YP_002497201.1| 50S ribosomal protein L4 [Methylobacterium nodulans ORS 2060]
 gi|254803744|sp|B8IS86|RL4_METNO RecName: Full=50S ribosomal protein L4
 gi|219946506|gb|ACL56898.1| ribosomal protein L4/L1e [Methylobacterium nodulans ORS 2060]
          Length = 206

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 109/206 (52%), Positives = 144/206 (69%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  +  LDG D G + + E IF L+P+  +L R +RWQ  +++ G  K K RSE++ T 
Sbjct: 1   MKFEITTLDGADAGSVELDEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH + S  QFRGG +AFGPV     H LPKKVR+LALRHALS K    
Sbjct: 61  KKMYKQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKAKDA 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D++  ++ KTK L   F  L LSNALII G ++D NF  AARN+P+I++LPVQGI
Sbjct: 121 SLIVVDDVRLEDGKTKALKECFGKLGLSNALIIGGTEVDENFGRAARNLPSIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+++A++ALE RFK
Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARFK 206


>gi|282926795|ref|ZP_06334422.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102]
 gi|282591246|gb|EFB96319.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102]
          Length = 207

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  LDG   G I +S+ +F ++P   +L   +  Q      G    K RS V+  
Sbjct: 1   MANYDVLKLDGTKSGSIELSDAVFGIEPNNSVLFEAINLQRASLCQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V+D    +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NGLTVVDAFNFEAPKTKEFKNVLSTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     LV++++A + +E+  
Sbjct: 181 LNVLDITNADSLVITEAAAKKVEEVL 206


>gi|311070764|ref|YP_003975687.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942]
 gi|310871281|gb|ADP34756.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942]
          Length = 207

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 117/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G I ++  +F ++P + ++   +  Q    R G  K K RSEV   
Sbjct: 1   MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVVD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+++L     KTK +    + L +    +I    ++    L+ARNIP + ++   G
Sbjct: 121 NNIVVLEDLTLDAVKTKEMAAILKGLSVEKKALIVTADVNETVSLSARNIPGVTVVQADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   KL+++K+A+E +E+  
Sbjct: 181 INVLDVVNHEKLLITKAAVEKVEEVL 206


>gi|114704485|ref|ZP_01437393.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506]
 gi|114539270|gb|EAU42390.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506]
          Length = 206

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 115/206 (55%), Positives = 150/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++++++ LDG D G +++SE IF L P+Q IL R++R+Q  +++ G   + GRS+VA TG
Sbjct: 1   MDVTIKKLDGADAGTVTLSEAIFGLDPRQDILHRMVRYQLAKRQQGTHSTLGRSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARHS+    QFRGGG A GP P      LPKK+R+LAL+HALS K  S 
Sbjct: 61  AKMYRQKGTGRARHSTAKAPQFRGGGIAHGPTPRSHAIDLPKKLRALALKHALSAKAKSG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID L + E KTK +V  F  L + NALII G +LD+NF  A+RNI  I++LPVQGI
Sbjct: 121 GLIVIDELKADEGKTKSMVKSFAGLGIENALIIGGSELDQNFARASRNIAKIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVLSKSA+EALE+RFK
Sbjct: 181 NVYDILRRQTLVLSKSAVEALEERFK 206


>gi|227821757|ref|YP_002825727.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234]
 gi|254803749|sp|C3MAY1|RL4_RHISN RecName: Full=50S ribosomal protein L4
 gi|227340756|gb|ACP24974.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234]
          Length = 206

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 123/206 (59%), Positives = 163/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ  +++ G  K+KGR+EVA TG
Sbjct: 1   MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LRHALS K  + 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +I+V+D+LV+ E KTK L   F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI
Sbjct: 121 EIIVLDDLVANEAKTKALAGAFASLGLTNALIIGGAEIENNFKLAAQNIPNVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|289550144|ref|YP_003471048.1| LSU ribosomal protein L4p (L1e) [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179676|gb|ADC86921.1| LSU ribosomal protein L4p (L1e) [Staphylococcus lugdunensis
           HKU09-01]
          Length = 207

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 104/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +F ++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKAGSVELSDAVFGIEPNNSVLFEAITLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   V+D+   +  KTK        L+    +++     D N  L+ARNIP + +    G
Sbjct: 121 NGFTVVDSFGFETPKTKEFKNVLTTLEQPKKVLVVTENEDVNVALSARNIPGVQVTTATG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     ++++++A + +E+  
Sbjct: 181 LNVLDISSADSVIITEAAAKKVEEVL 206


>gi|90417762|ref|ZP_01225674.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1]
 gi|90337434|gb|EAS51085.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1]
          Length = 206

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 116/206 (56%), Positives = 155/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++++++LDG+D G  ++++DIF L+P++ IL R++RWQ  +++ G  ++ GR+E+A TG
Sbjct: 1   MDVTIKSLDGKDAGTATLADDIFGLEPREDILQRMVRWQLAKRQQGSHQTLGRAEIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K+Y QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+LALRHALS K  S 
Sbjct: 61  AKLYRQKGTGRARHGSARAPQFRGGGKAHGPVSRSHAHDLPKKVRALALRHALSAKAKSG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+VID L + E KTK +V  F  L L+NAL I G +LD NF  +ARNIP +++LPVQGI
Sbjct: 121 GIVVIDELKAAEGKTKAMVKTFADLGLTNALFIGGAELDANFTRSARNIPQMDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRQTLVLSKAAVEALEERFK 206


>gi|78043328|ref|YP_361117.1| 50S ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901]
 gi|109893583|sp|Q3A9R7|RL4_CARHZ RecName: Full=50S ribosomal protein L4
 gi|77995443|gb|ABB14342.1| ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901]
          Length = 206

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G   G I + ++IF     + +L  V       +R G   +K R EV+  
Sbjct: 1   MPKVPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +R GG  FGP P    +++PKKVR  AL+ ALSDK   
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D+L     KTK ++     L ++   +I     D   + +ARNIP ++++    
Sbjct: 121 NNLIVVDSLTFAAPKTKEMIRVLNNLKVNGKTLIVTAGYDEIVEKSARNIPGVSVMTAPS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N   +L   KL++++ A+  +E+ F
Sbjct: 181 LNALSLLNHDKLIMTRDAVLKVEEVF 206


>gi|147676656|ref|YP_001210871.1| 50S ribosomal protein L4 [Pelotomaculum thermopropionicum SI]
 gi|189029511|sp|A5D5J1|RL4_PELTS RecName: Full=50S ribosomal protein L4
 gi|146272753|dbj|BAF58502.1| ribosomal protein L4 [Pelotomaculum thermopropionicum SI]
          Length = 206

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ N +GE  G +++ ++IF ++  + +L   +      +R+G   +K RSEV   
Sbjct: 1   MPTVALYNTNGEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +RGGG  FGP P    ++LP+KVR LAL+ ALS K  S
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            DI+V+D L   + KTK +      L + +AL++   + D   + +ARNIPNI  +    
Sbjct: 121 GDILVLDELKLDQPKTKEMARILNNLKVDDALLV-TAEKDEAVERSARNIPNIKPVQAAL 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   KLV+++ A+  +E+ F
Sbjct: 180 LNVYDILAYDKLVMTRDAVARVEEVF 205


>gi|146340058|ref|YP_001205106.1| 50S ribosomal protein L4 [Bradyrhizobium sp. ORS278]
 gi|166234639|sp|A4YSJ3|RL4_BRASO RecName: Full=50S ribosomal protein L4
 gi|146192864|emb|CAL76869.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS278]
          Length = 206

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 148/206 (71%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G++ G + +S+ IF L+P+  I+ R ++WQ  +++ G  K+KGR+E+  TG
Sbjct: 1   MELKVTTLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S  V QFRGGG+AFGPV       LPKKVR+LAL+HALS K    
Sbjct: 61  KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++V++N   +  KTK L+  F  L L+NALIIDG +L   F  AARNIPN+++LP+QGI
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLTNALIIDGAELHNGFAAAARNIPNLDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+AI+ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206


>gi|154245624|ref|YP_001416582.1| ribosomal protein L4/L1e [Xanthobacter autotrophicus Py2]
 gi|226731446|sp|A7IFY2|RL4_XANP2 RecName: Full=50S ribosomal protein L4
 gi|154159709|gb|ABS66925.1| ribosomal protein L4/L1e [Xanthobacter autotrophicus Py2]
          Length = 206

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 106/206 (51%), Positives = 147/206 (71%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++V+ LDG + G +++S++IF L+P+  IL R + WQ  R++ G  ++KGRSE+  T 
Sbjct: 1   MEITVKTLDGIEAGSVTLSDEIFGLEPRADILHRCVTWQLSRRQAGTHRTKGRSEINRTS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH + S  QFRGGG+AFGPV       LPKKVR+LAL+HALS K  + 
Sbjct: 61  KKMYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAIDLPKKVRALALKHALSSKAKAA 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+V+D +   + KTK L   F  L L + LI+DG Q+++N  LAARN+P +++LP+QGI
Sbjct: 121 QIIVLDKVSLDDPKTKALKEHFAKLGLESVLIVDGAQVEQNVALAARNLPYVDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRDTLVLTKAAVDALEARFK 206


>gi|210623189|ref|ZP_03293628.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275]
 gi|210153726|gb|EEA84732.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275]
          Length = 207

 Score =  211 bits (538), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N++G++ G I + + IF ++  + +L   ++ Q   +R G   +K R+EV   
Sbjct: 1   MPKINVMNINGQNVGEIELCDSIFNVEVNEHVLYEAVKCQLANRRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P    + LPKKVR LA++ ALS K  +
Sbjct: 61  GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKCALSSKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L     KTK  V     +  S   ++   + + N   +ARNI  +    V  
Sbjct: 121 NEIIVLDALTMDAPKTKEFVAILNNIKASRKALVVTAEKNENVIKSARNIEGVQTALVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL     V++  A++ +E+ +
Sbjct: 181 LNVYDILNHDTFVITTDAVKKVEEVY 206


>gi|315659226|ref|ZP_07912090.1| ribosomal protein L4/L1 family protein [Staphylococcus lugdunensis
           M23590]
 gi|315495651|gb|EFU83982.1| ribosomal protein L4/L1 family protein [Staphylococcus lugdunensis
           M23590]
          Length = 207

 Score =  211 bits (537), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 104/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +F ++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKAGSVELSDAVFGIEPNNSVLFEAITLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   V+D+   +  KTK        L+    +++     D N  L+ARNIP + +    G
Sbjct: 121 NGFTVVDSFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVALSARNIPGVQVTTATG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     ++++++A + +E+  
Sbjct: 181 LNVLDISSADSVIITEAAAKKVEEVL 206


>gi|85715130|ref|ZP_01046114.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A]
 gi|85698045|gb|EAQ35918.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A]
          Length = 206

 Score =  211 bits (537), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 109/206 (52%), Positives = 149/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++  L+G+  G + +S+ IF L+P++ ++ R + WQ  +++ G  K+KGR+E+  TG
Sbjct: 1   MELNITTLEGKAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTRKTKGRAEIWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K++ QKGTG ARH S    QFRGGG+AFGPV     H LPKKVR+LALRHALS K    
Sbjct: 61  KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID++  KE KTK L+  F  L L++ALI+DG Q+   F  AARNIPNI++LP+QGI
Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSGLGLTSALIVDGAQVHAGFATAARNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206


>gi|293375390|ref|ZP_06621671.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis
           PC909]
 gi|325844472|ref|ZP_08168199.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1]
 gi|292645943|gb|EFF63972.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis
           PC909]
 gi|325489146|gb|EGC91530.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1]
          Length = 207

 Score =  211 bits (537), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 122/206 (59%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I ++E IF ++P +  +   +  Q    R G  K+K R+EV   
Sbjct: 1   MPQVALYNQQGAQVGEIVLNEAIFGIEPHKQAMFDAVIMQRASMRQGTHKTKTRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGPVP    + L KKVR LAL+ AL+ K   
Sbjct: 61  GRKPWKQKGTGRARQGSIRAPQWRGGGIVFGPVPRSYAYKLNKKVRRLALKSALATKVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D LV +  KTK ++    AL++++  ++   + +   +L+ RNIP + +L V  
Sbjct: 121 NEIVVLDQLVFEAPKTKQMINVLGALNVTSKALVVTAEENAAVELSTRNIPGVKVLTVSQ 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+L  +KLV+++ A++ +E+  
Sbjct: 181 LNVLDLLDATKLVITQDAVKKIEEVL 206


>gi|254517471|ref|ZP_05129527.1| ribosomal protein L4 [Clostridium sp. 7_2_43FAA]
 gi|226911220|gb|EEH96421.1| ribosomal protein L4 [Clostridium sp. 7_2_43FAA]
          Length = 206

 Score =  211 bits (537), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G+  G I +++++F ++     + +V+      KR G   +K R+EV   
Sbjct: 1   MPTVGLFNQEGKQVGDIQLNDNVFGVEVNTDAMHQVVVALLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRMSVPKSMRRVAMKSALTSKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++ L  +  KTK +V   +A D    LII G + +     +ARNI ++ ++PV  
Sbjct: 121 GQMVVLETLAFEAPKTKKMVEVLKAFDAKKTLIITG-ESNEVLYKSARNIADVQIMPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  KL+++K A+  +E+ +
Sbjct: 180 INVYDLLKFEKLIITKDAVSKIEEVY 205


>gi|126732273|ref|ZP_01748073.1| 50S ribosomal protein L4 [Sagittula stellata E-37]
 gi|126707142|gb|EBA06208.1| 50S ribosomal protein L4 [Sagittula stellata E-37]
          Length = 205

 Score =  211 bits (537), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 97/206 (47%), Positives = 130/206 (63%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V NLDG   G + + E +F L+P+  IL RV+RWQ  + + G  K K RSEV+Y+ 
Sbjct: 1   MKLDVINLDGGSAGEVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH S+    FR GG   GP P    H LPKKVR+L L+ ALSDK  + 
Sbjct: 61  KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHELPKKVRALGLKMALSDKARNG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID++     KTK L  +   L    ALIIDG +++ NF  AARNI  +++LP  G 
Sbjct: 121 ALIVIDSID-GASKTKALAAQVSKLGWKRALIIDGAEVNENFAKAARNIEGLDVLPTIGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205


>gi|92117099|ref|YP_576828.1| 50S ribosomal protein L4 [Nitrobacter hamburgensis X14]
 gi|122418094|sp|Q1QN29|RL4_NITHX RecName: Full=50S ribosomal protein L4
 gi|91799993|gb|ABE62368.1| LSU ribosomal protein L4P [Nitrobacter hamburgensis X14]
          Length = 206

 Score =  211 bits (537), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 112/206 (54%), Positives = 146/206 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V  L+G   G + +S+ IF L+P++ ++ R + WQ  +++ G  K+KGR+E+  TG
Sbjct: 1   MELNVTTLEGNAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTHKTKGRAEIWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KM+ QKGTG ARH S  V QFRGGG+AFGPV     H LPKKVR+LALRHALS K    
Sbjct: 61  KKMFKQKGTGNARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID+    E KTK LV  F  L L+NALI+DG  +   F  AARNIPNI++LP+QGI
Sbjct: 121 GLIVIDSAELNEAKTKALVGHFSGLGLTNALIVDGAAVHAGFATAARNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRRKLVLTKAAVDALEARFK 206


>gi|226309809|ref|YP_002769703.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599]
 gi|254803719|sp|C0ZII1|RL4_BREBN RecName: Full=50S ribosomal protein L4
 gi|226092757|dbj|BAH41199.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599]
          Length = 207

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I +++ +F ++P   +L   +  Q   +R G    K RSEV   
Sbjct: 1   MPKVALYNQTGSQVGEIDLADSVFGIEPNSAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q++GGG  FGP P    + L +KVR LAL+ ALS K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V++ L     KTK +     +L +   ++I   + D+N  LA+RNIP   ++   G
Sbjct: 121 NELLVLEALNFAAPKTKEMTAVLSSLKVDRKVLIVTSEYDQNVALASRNIPGTKIVDAAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   K+++++ A+  +E+  
Sbjct: 181 INVLDLVAHDKVIVTREAVAKVEEVL 206


>gi|329770039|ref|ZP_08261434.1| 50S ribosomal protein L4 [Gemella sanguinis M325]
 gi|328837350|gb|EGF86980.1| 50S ribosomal protein L4 [Gemella sanguinis M325]
          Length = 207

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L +   DG   G +  ++ +F ++P Q +L + +  Q    R G  K+KGRSEV+  
Sbjct: 1   MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      +P+K+R LALR ALS K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++  ++ L     KTK        L L   ++    +L+ N  L+ RNIP +  +   G
Sbjct: 121 NEVFALETLAFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DIL  +K+V +K A+E + +  
Sbjct: 181 LNVLDILGSNKVVFTKDALEKVGEVL 206


>gi|15965110|ref|NP_385463.1| 50S ribosomal protein L4 [Sinorhizobium meliloti 1021]
 gi|307314360|ref|ZP_07593966.1| ribosomal protein L4/L1e [Sinorhizobium meliloti BL225C]
 gi|307322072|ref|ZP_07601448.1| ribosomal protein L4/L1e [Sinorhizobium meliloti AK83]
 gi|46577284|sp|Q92QG9|RL4_RHIME RecName: Full=50S ribosomal protein L4
 gi|15074290|emb|CAC45936.1| Probable 50S ribosomal protein L4 [Sinorhizobium meliloti 1021]
 gi|306892254|gb|EFN23064.1| ribosomal protein L4/L1e [Sinorhizobium meliloti AK83]
 gi|306899058|gb|EFN29700.1| ribosomal protein L4/L1e [Sinorhizobium meliloti BL225C]
          Length = 206

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 124/206 (60%), Positives = 163/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ  +++ G  KSKGR+EV+ TG
Sbjct: 1   MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKK+R+L LRHALS K  + 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           DI+VID+LV+ E KTK L   F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI
Sbjct: 121 DIIVIDDLVANEAKTKALAGAFASLGLTNALIIGGAEIEGNFKLAAQNIPNVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|296268551|ref|YP_003651183.1| 50S ribosomal protein L4/L1e [Thermobispora bispora DSM 43833]
 gi|296091338|gb|ADG87290.1| ribosomal protein L4/L1e [Thermobispora bispora DSM 43833]
          Length = 216

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 1/205 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V + +G   G + + E+IF  K    ++ +V+  Q   +R G   +K R +V+  G 
Sbjct: 4   TIDVLDANGAKAGTVELPEEIFGAKVNVPLMHQVVVAQLAARRQGTHATKTRGDVSGGGK 63

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+     
Sbjct: 64  KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRSYDQRTPKKMKAAALRGALSDRASCGR 123

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +  V + +     KTK  +   R +  +  +++   + D     + RN+P ++LL    +
Sbjct: 124 VHVVTNLITGDTPKTKVALAALRKVTQAPRVLVVVDENDELTWRSLRNVPEVHLLDAGQL 183

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N YD+L    +V ++ A E +  R 
Sbjct: 184 NTYDVLVNDDVVFTREAFEQVVARL 208


>gi|296447531|ref|ZP_06889453.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b]
 gi|296254919|gb|EFH02024.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b]
          Length = 206

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 103/206 (50%), Positives = 142/206 (68%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V + DG++ G I ++++IF L+P+  ++ R++RWQ  ++R G    K R+++A TG
Sbjct: 1   MQIGVTSYDGQEAGSIELADEIFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S+ V QF GGG+AFGPV     H LPKKVR+LAL+HALS K    
Sbjct: 61  KKMYKQKGTGGARHGSRRVPQFIGGGRAFGPVVRSHEHDLPKKVRALALKHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+V +N      KTK L   F    L++ALIIDG +   NF LAARN+P I++LPV G+
Sbjct: 121 AIIVWENASLDAPKTKMLKAGFDKTGLTSALIIDGAEPQVNFALAARNLPKIDVLPVTGV 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+++A++ALE R K
Sbjct: 181 NVYDILRRDKLVLTRAAVDALEARLK 206


>gi|229552709|ref|ZP_04441434.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1]
 gi|229313915|gb|EEN79888.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1]
          Length = 207

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG + G + +++ I+A++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L   + KTK  +     L +++  ++     +     AARN+PN+ ++P +G
Sbjct: 121 GDLVVVDGLSFDDPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAKAARNLPNVKVVPAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D +   KL+L++SA++ +E+  
Sbjct: 181 INVLDAVNYKKLILTQSALQKIEEVL 206


>gi|218135280|ref|ZP_03464084.1| hypothetical protein BACPEC_03185 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990665|gb|EEC56676.1| hypothetical protein BACPEC_03185 [Bacteroides pectinophilus ATCC
           43243]
          Length = 206

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +++ IF ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVGSLELNDAIFGVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTSRVVD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I+V+D +   E KTK      + L L  AL++ G   D N  L+ARNIP++ +     
Sbjct: 121 SKIVVLDEIKFNEIKTKNFANVMKNLKLDKALMVIGDN-DANVILSARNIPDVKVSQPNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+   LV++K A+  +E+ +
Sbjct: 180 INVYDILKYDTLVVTKDAVAKIEEVY 205


>gi|325293335|ref|YP_004279199.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3]
 gi|325061188|gb|ADY64879.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3]
          Length = 206

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 125/206 (60%), Positives = 163/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ L+G+D G +S+S++IF L P+Q ILAR++RWQ  +K+ G  K+K R+EV+ TG
Sbjct: 1   MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKTRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+LALRHALS K  + 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++++D LV+ E KTK L+  F +L L+NAL+I G +LD NF+LAA+NIPN+++LPVQGI
Sbjct: 121 DLIIVDQLVASEAKTKALLGSFASLGLTNALVIGGAELDGNFKLAAQNIPNVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|260664854|ref|ZP_05865705.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US]
 gi|297205088|ref|ZP_06922484.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
           JV-V16]
 gi|260561337|gb|EEX27310.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US]
 gi|297149666|gb|EFH29963.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
           JV-V16]
          Length = 205

 Score =  211 bits (536), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 119/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G+D G +++++++F ++P + ++   +  Q    R G   +K RS V   
Sbjct: 1   MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    ++LP+KVR LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L     KTK        L++ + +++     + N QL+ARN+ N+ ++PV G
Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSD--NENVQLSARNLENVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEEVL 204


>gi|317131370|ref|YP_004090684.1| ribosomal protein L4/L1e [Ethanoligenens harbinense YUAN-3]
 gi|315469349|gb|ADU25953.1| ribosomal protein L4/L1e [Ethanoligenens harbinense YUAN-3]
          Length = 207

 Score =  211 bits (536), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V N+ GE  G I +++ +F ++P +  L  V+      +R G   +  RSEV+  
Sbjct: 1   MPKATVFNIAGEQVGEIELADSVFGIEPNKTALHTVVVNYLANQRQGTQSTLTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++ GG A GP P    + + KKVR LAL+ ALS K  +
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWKHGGIALGPKPRSYTYTVNKKVRRLALKSALSAKLAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D +   E KTK +VT     + S   +     ++ N   +ARNIP +       
Sbjct: 121 GELVVLDAISLPEIKTKQVVTILSKFETSKKALFVTAGVNENLVKSARNIPGVKTASTGS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L  +K  +SK A+ ALE+ +
Sbjct: 181 LNVYDLLDSNKFFISKDAVAALEEVY 206


>gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
           269-3]
 gi|238832313|gb|EEQ24622.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
           269-3]
          Length = 205

 Score =  211 bits (536), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G+D G +++++++F ++P + ++   +  Q    R G   +K RS V   
Sbjct: 1   MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    ++LP+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L     KTK        L++ + +++     + N QL+ARN+ N+ ++PV G
Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSD--NENVQLSARNLENVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEEVL 204


>gi|224477219|ref|YP_002634825.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254803753|sp|B9DM18|RL4_STACT RecName: Full=50S ribosomal protein L4
 gi|222421826|emb|CAL28640.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 207

 Score =  211 bits (536), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +FA++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKAGSVELSDSVFAIEPNKDVIFEAINLQRASLRQGTHSVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   V+D    +  KTK        L+L   +++     D N +L+ARNIP + +  V G
Sbjct: 121 NGFTVVDAFGLEAPKTKEFTKVLSNLELPKKVLVVTESEDVNVELSARNIPGVQITTVTG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     ++++++A + +E+  
Sbjct: 181 LNVLDITSADSVLITEAAAKKVEEVL 206


>gi|223042572|ref|ZP_03612621.1| ribosomal protein L4/L1 family [Staphylococcus capitis SK14]
 gi|314934296|ref|ZP_07841655.1| ribosomal protein L4/L1 family protein [Staphylococcus caprae C87]
 gi|222444235|gb|EEE50331.1| ribosomal protein L4/L1 family [Staphylococcus capitis SK14]
 gi|313652226|gb|EFS15989.1| ribosomal protein L4/L1 family protein [Staphylococcus caprae C87]
          Length = 207

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   V+D+      KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NGFTVVDSFGFDAPKTKEFKNVLSTLEQPKKVLVVTEDEDVNVELSARNIPGVQVSTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     +V++++A + +E+  
Sbjct: 181 LNVLDITSADSVVITEAAAKKVEEVL 206


>gi|291533620|emb|CBL06733.1| LSU ribosomal protein L4P [Megamonas hypermegale ART12/1]
          Length = 207

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V  + G+  G I ++E +F ++  +G++ + +  Q   +R+G   +K R  V   
Sbjct: 1   MPKVAVYTVAGQQIGDIELNESVFGVEVNEGLVHQAVVMQLAAQRLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LA++ AL+DK  +
Sbjct: 61  GRKPWKQKGTGRARSGSTRSPLWVGGGTVFGPSPRSYAFRMPRKQRRLAIKCALTDKVNN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D +V+++L     KTK +V      +++   +I    +  N + ++RNIP +  +   G
Sbjct: 121 GDFIVLESLDFAAPKTKEVVKMMSDFNVAEKALIVTADVVENVEKSSRNIPGVKAISSCG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL  +KL ++K AI  +E+  
Sbjct: 181 LNVYDILNHNKLFITKDAITRIEEVL 206


>gi|83312228|ref|YP_422492.1| 50S ribosomal protein L4 [Magnetospirillum magneticum AMB-1]
 gi|109893601|sp|Q2W2J2|RL4_MAGMM RecName: Full=50S ribosomal protein L4
 gi|82947069|dbj|BAE51933.1| Ribosomal protein L4 [Magnetospirillum magneticum AMB-1]
          Length = 206

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 127/206 (61%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ +V +LD +  G I ++++IF +  +  IL R + WQ  +++ G  K+K  SE++ T 
Sbjct: 1   MKTNVISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKG GRAR  S   +QFRGG   FGPV     H LPKKVR LAL+ ALS K    
Sbjct: 61  KKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D   +   KTK L  R   L LS+ L IDG  +D NF LA+RNIP +++LP QG 
Sbjct: 121 KLIVVDAASAGSPKTKDLAARLGKLGLSSVLFIDGAAVDGNFALASRNIPYVDVLPTQGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K A+ ALE R K
Sbjct: 181 NVYDILRRDTLVLTKDAVAALEARLK 206


>gi|199598833|ref|ZP_03212244.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001]
 gi|258540678|ref|YP_003175177.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus Lc 705]
 gi|199590245|gb|EDY98340.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001]
 gi|257152354|emb|CAR91326.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus Lc 705]
          Length = 207

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG + G + +++ I+A++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L     KTK  +     L +++  ++     +     AARN+PN+ ++P +G
Sbjct: 121 GDLVVVDGLSFDAPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAKAARNLPNVKVVPAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D +   KL+L++SA++ +E+  
Sbjct: 181 INVLDAVNYKKLILTQSALQKIEEVL 206


>gi|258509481|ref|YP_003172232.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG]
 gi|257149408|emb|CAR88381.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus GG]
 gi|259650760|dbj|BAI42922.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG]
          Length = 207

 Score =  210 bits (535), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG + G + +++ I+A++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MANVTLYKQDGSENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L     KTK  +     + +++  ++     +     AARN+PN+ ++P +G
Sbjct: 121 GDLVVVDGLSFDAPKTKAFLNVLDGIKVNDKALVVLEDGNDVAAKAARNLPNVKVVPAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D +   KL+L++SA++ +E+  
Sbjct: 181 INVLDAVNYKKLILTQSALQKIEEVL 206


>gi|289423702|ref|ZP_06425501.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius
           653-L]
 gi|289155952|gb|EFD04618.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius
           653-L]
          Length = 207

 Score =  210 bits (535), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 119/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N+ G++ G I +++ IF ++  + +L   ++ Q   KR G   +K R+EV   
Sbjct: 1   MPKINVLNVSGQNVGEIELNDSIFDIEVNEHVLYEAVKCQLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P    ++LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+V+D L  +  KTK +V  F+ ++ +   ++   + D N   + RNI   N+  V  
Sbjct: 121 KEIIVLDALSLEAPKTKEIVNLFKNVNAAKKTLVVTAENDVNVVKSVRNIEGANVAHVST 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL C   +++  A++ +E+ +
Sbjct: 181 LNVYDILNCDSFIITTDAVKKVEEVY 206


>gi|317496189|ref|ZP_07954549.1| ribosomal protein L4/L1 family protein [Gemella moribillum M424]
 gi|316913764|gb|EFV35250.1| ribosomal protein L4/L1 family protein [Gemella moribillum M424]
          Length = 207

 Score =  210 bits (535), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L +   DG   G +  ++ +F ++P Q +L + +  Q    R G  K+KGRSEV+  
Sbjct: 1   MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      +P+K+R LALR ALS K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++  ++ L     KTK        L L   ++    +L+ N  L+ RNIP +  +   G
Sbjct: 121 NEVFALETLTFDSIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DIL  +K+V +K A+E + +  
Sbjct: 181 LNVLDILGSNKVVFTKDALEKVGEVL 206


>gi|150396208|ref|YP_001326675.1| 50S ribosomal protein L4 [Sinorhizobium medicae WSM419]
 gi|166199909|sp|A6U860|RL4_SINMW RecName: Full=50S ribosomal protein L4
 gi|150027723|gb|ABR59840.1| ribosomal protein L4/L1e [Sinorhizobium medicae WSM419]
          Length = 206

 Score =  210 bits (535), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 121/206 (58%), Positives = 163/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ  +++ G  K+KGR+EV+ TG
Sbjct: 1   MDLTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LRHALS K  + 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +I+++D+LV+ E KTK L   F +L L+NALII G +++ NF+LAA+NIPN+++LPVQGI
Sbjct: 121 EIIIVDDLVANEAKTKALAGAFASLGLTNALIIGGAEIEGNFKLAAQNIPNVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|75675557|ref|YP_317978.1| 50S ribosomal protein L4 [Nitrobacter winogradskyi Nb-255]
 gi|109893613|sp|Q3SSW5|RL4_NITWN RecName: Full=50S ribosomal protein L4
 gi|74420427|gb|ABA04626.1| LSU ribosomal protein L4P [Nitrobacter winogradskyi Nb-255]
          Length = 206

 Score =  210 bits (535), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 111/206 (53%), Positives = 149/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V  L+G+  G + +S+ IF L+P++ ++ R + WQ  + + G  K+KGR+E+  TG
Sbjct: 1   MELNVTTLEGKAAGSVHLSDGIFGLEPRKDLIQRCVNWQLAKSQAGTHKTKGRAEIWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K++ QKGTG ARH S    QFRGGG+AFGPV     H LPKKVR+LALRHALS K    
Sbjct: 61  KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID++  KE KTK L+  F +L L++ALIIDG Q+   F  AARNIPNI++LP+QGI
Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSSLGLTSALIIDGAQVHAGFATAARNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAVDALEARFK 206


>gi|89070556|ref|ZP_01157845.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516]
 gi|89043863|gb|EAR50061.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516]
          Length = 206

 Score =  210 bits (534), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 124/206 (60%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V  LDG   G + + E++F L+P+  IL RV+RWQ    + G  K K R E +Y+ 
Sbjct: 1   MKADVIKLDGGKAGSVELDEELFGLEPRTDILHRVVRWQRNNAQQGTHKVKTRRETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKQKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VID +   E KT  L  + + L    AL+IDG  ++ +F  AARN+ N+++LP  G 
Sbjct: 121 ELVVIDTIEIAEAKTSQLAKQVKNLGWKRALVIDGAAVNEDFAKAARNLANLDVLPSMGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 181 NVYDILKSDTLVLTKAGVEALEARLK 206


>gi|154483186|ref|ZP_02025634.1| hypothetical protein EUBVEN_00887 [Eubacterium ventriosum ATCC
           27560]
 gi|149735994|gb|EDM51880.1| hypothetical protein EUBVEN_00887 [Eubacterium ventriosum ATCC
           27560]
          Length = 206

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N++G + G I +S+ +F ++  + ++ + +  Q    R G  K+K RSEV+  
Sbjct: 1   MAKVSVLNMEGSEVGTIELSDAVFGVEVNEHLVHQAVLSQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK + +AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKMNKKEKRIALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D L  +  KTK       A   +   ++   + D N   +A+NIP +       
Sbjct: 121 GKLIVVDELKFEAPKTKEFAKVM-ANLNTKKALVVLNENDANTVKSAKNIPTVKTALTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+   +V+ K+A+  +E+ +
Sbjct: 180 INVYDILKYDTVVVEKAAVATIEEVY 205


>gi|148256391|ref|YP_001240976.1| 50S ribosomal protein L4 [Bradyrhizobium sp. BTAi1]
 gi|166234638|sp|A5ELM6|RL4_BRASB RecName: Full=50S ribosomal protein L4
 gi|146408564|gb|ABQ37070.1| LSU ribosomal protein L4P [Bradyrhizobium sp. BTAi1]
          Length = 206

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 113/206 (54%), Positives = 148/206 (71%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  L+G+D G + +S+ IF L+P+  I+ R ++WQ  +++ G  K+KGR+E+  TG
Sbjct: 1   MELKVTTLEGKDAGSVQLSDAIFGLEPRVDIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S  V QFRGGG+AFGPV       LPKKVR+LAL+HALS K    
Sbjct: 61  KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++V++N   +  KTK L+  F  L L+NALIIDG +L   F  AARNIPN+++LP+QGI
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLTNALIIDGAELHNGFAAAARNIPNLDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+AI+ALE RFK
Sbjct: 181 NVYDILRRQKLVLTKAAIDALEARFK 206


>gi|241889133|ref|ZP_04776437.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379]
 gi|241864382|gb|EER68760.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379]
          Length = 207

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L +   DG   G +  +E +F ++P Q +L + +  Q    R G  K+KGRSEV+  
Sbjct: 1   MPQLDLFKQDGTKVGAVEANEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      +P+K+R LALR ALS K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++  +++L     KTK        L L   ++    +L+ N  L+ RNIP +  +   G
Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DILR +K+V +K A+E + +  
Sbjct: 181 LNVLDILRSNKVVFTKDAVEKVGEVL 206


>gi|256852037|ref|ZP_05557424.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN]
 gi|260661394|ref|ZP_05862307.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN]
 gi|256615449|gb|EEU20639.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN]
 gi|260547849|gb|EEX23826.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN]
          Length = 205

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 119/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G+D G +++++++F ++P + ++   +  Q    R G   +K RS V   
Sbjct: 1   MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    ++LP+KVR LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++++D L     KTK        L++ + +++     + N QL+ARN+ N+ ++PV G
Sbjct: 121 NNLIILDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSD--NENVQLSARNLENVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVVDAVNYDKLILTQDAVKRIEEVL 204


>gi|242371895|ref|ZP_04817469.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W1]
 gi|242350402|gb|EES42003.1| 50S ribosomal protein L4 [Staphylococcus epidermidis M23864:W1]
          Length = 207

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 104/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELSDAVFAIEPNNSVLFEAINLQRASLRQGTHSVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
               V+D       KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 KGFTVVDTFGFDAPKTKEFKNVLTTLEQPKKVLVVTEGEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     +V++++A + +E+  
Sbjct: 181 LNVLDITSADSVVITEAAAKKVEEVL 206


>gi|191639427|ref|YP_001988593.1| 50S ribosomal protein L4 [Lactobacillus casei BL23]
 gi|227533961|ref|ZP_03964010.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239630350|ref|ZP_04673381.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067502|ref|YP_003789525.1| 50S ribosomal protein L4 [Lactobacillus casei str. Zhang]
 gi|226730677|sp|B3WAL6|RL4_LACCB RecName: Full=50S ribosomal protein L4
 gi|190713729|emb|CAQ67735.1| 50S ribosomal protein L4 [Lactobacillus casei BL23]
 gi|227188338|gb|EEI68405.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239527962|gb|EEQ66963.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439909|gb|ADK19675.1| Ribosomal protein L4 [Lactobacillus casei str. Zhang]
 gi|327383516|gb|AEA54992.1| 50S ribosomal protein L4 [Lactobacillus casei LC2W]
 gi|327386709|gb|AEA58183.1| 50S ribosomal protein L4 [Lactobacillus casei BD-II]
          Length = 207

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 117/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG + G + +++ I+A++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MANVTLYKQDGSENGKVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +D++V+D L     KTK   T    L +S+  ++     +     AARN+PN+ ++P +G
Sbjct: 121 SDLVVVDGLNFDAPKTKAFATVLDGLKVSDKALVVLEDGNEVAAKAARNLPNVKVVPAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   KL+L++SA++ +E+  
Sbjct: 181 INVLDVVDYKKLILTQSALQKIEEVL 206


>gi|118444236|ref|YP_877199.1| 50S ribosomal protein L4 [Clostridium novyi NT]
 gi|166234658|sp|A0PXU7|RL4_CLONN RecName: Full=50S ribosomal protein L4
 gi|118134692|gb|ABK61736.1| ribosomal protein L4/L1 family [Clostridium novyi NT]
          Length = 206

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N++G+  G + ++E +FA++  + +L +V+  Q   KR G   +K R+EV+  
Sbjct: 1   MPTVDLYNIEGQKVGDLQLAETVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A++ AL+ K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+++L     KTK +V    A +     +I   + +     + RNI    ++PV  
Sbjct: 121 NELVVLESLELDAPKTKEMVKMINAFE-GKKPLIVVPESNEVIYKSVRNIEGATVVPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+  K +++K A+  +E+ +
Sbjct: 180 INVYDILKHDKFIITKEAVSKIEEVY 205


>gi|323490624|ref|ZP_08095829.1| 50S ribosomal protein L4 [Planococcus donghaensis MPA1U2]
 gi|323395716|gb|EGA88557.1| 50S ribosomal protein L4 [Planococcus donghaensis MPA1U2]
          Length = 207

 Score =  210 bits (534), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I +++ +F ++P + +L   +  Q    R G  K K RSEVA  
Sbjct: 1   MTKVALLNQTGSQVGEIELNDHVFGIQPNESVLFDAVVSQRASLRQGNHKVKNRSEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LALR ALS     
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALRSALSSAVVG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++MV++ L     KTK        L +    +     LD N   +ARN+  + ++   G
Sbjct: 121 ENLMVLEGLTFDAPKTKSFNQLIADLSIGKKALFVTADLDENVAKSARNLKGMTVVAADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L   K+V++K+A+E +E+  
Sbjct: 181 INVLDLLGHDKIVMTKAAVEKIEEVL 206


>gi|238916266|ref|YP_002929783.1| large subunit ribosomal protein L4 [Eubacterium eligens ATCC 27750]
 gi|259491557|sp|C4Z2T1|RL4_EUBE2 RecName: Full=50S ribosomal protein L4
 gi|238871626|gb|ACR71336.1| large subunit ribosomal protein L4 [Eubacterium eligens ATCC 27750]
          Length = 206

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +++ +F ++  + ++   +  Q    R G   +K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK + +AL  ALS K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N I+V+D     E KTK        L +  AL++   + ++N  L+ RNIP + +     
Sbjct: 121 NKIVVLDAFNLDEIKTKKFAEVMSNLKVDKALVVIEGE-NKNVVLSGRNIPTVKVSATNE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN YD+L+   LV++K+A+E LE+ +
Sbjct: 180 INTYDVLKYETLVVTKAAVEKLEEVY 205


>gi|73661973|ref|YP_300754.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82581595|sp|Q49ZG7|RL4_STAS1 RecName: Full=50S ribosomal protein L4
 gi|72494488|dbj|BAE17809.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 207

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGTKSGSVELSDAVFAIEPNNNVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D L     KTK   T    L+    +++     D N  L+ARNIP + +   QG
Sbjct: 121 KGLTVVDALNLDAPKTKEFKTVLSNLEQPKKVLVVTESEDVNVALSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     +V+++SA + +E+  
Sbjct: 181 LNVLDITSADSVVITESAAKKVEEVL 206


>gi|15889241|ref|NP_354922.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens str. C58]
 gi|46576833|sp|Q8UE19|RL4_AGRT5 RecName: Full=50S ribosomal protein L4
 gi|15157068|gb|AAK87707.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens str. C58]
          Length = 206

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 125/206 (60%), Positives = 163/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ L+G+D G +S+S++IF L P+Q ILAR++RWQ  +K+ G  K+K RSEV+ TG
Sbjct: 1   MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+LALRHALS K  + 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D LV+ E KTK L+  F +L L+NAL+I G +LD NF+LAA+NIPN+++LPVQGI
Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLTNALVIGGAELDGNFKLAAQNIPNVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|329768274|ref|ZP_08259775.1| 50S ribosomal protein L4 [Gemella haemolysans M341]
 gi|328837473|gb|EGF87102.1| 50S ribosomal protein L4 [Gemella haemolysans M341]
          Length = 207

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L +   DG   G +  SE +F ++P Q +L + +  Q    R G  K+KGRSEV+  
Sbjct: 1   MPQLDLFKQDGTKVGAVEASEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      +P+K+R LALR ALS K  +
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++  +++L     KTK        L L   ++    +L+ N  L+ RNIP +  +   G
Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFVVTELEENTVLSGRNIPGVEFVETTG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DIL  +K+V +K A+E + +  
Sbjct: 181 LNVLDILGSNKVVFTKDAVEKVGEVL 206


>gi|260432430|ref|ZP_05786401.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416258|gb|EEX09517.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 205

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 124/206 (60%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG+  G I + E +F L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGKKAGDIELDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H LPKK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHDLPKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VID   ++  KT  L  +   L    AL+IDG  ++  F  AARNI  +++LP  G 
Sbjct: 121 ELVVIDAAEAE-GKTAALAKQVANLGWKRALVIDGATVNEGFARAARNIEGLDILPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205


>gi|310817007|ref|YP_003964971.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25]
 gi|308755742|gb|ADO43671.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25]
          Length = 206

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 128/206 (62%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++   NLDG   G + +++ IFAL+P+  IL R++RWQ  R + G  K  G+SEV+Y+ 
Sbjct: 1   MKIDAINLDGGAAGSVELNDAIFALEPRADILHRLVRWQRARAQQGTHKVLGKSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH SK    FR GG   GP P    H L KK R+L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHEHDLTKKFRALGLKHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI+     E KT  L  +   L    AL+IDG  +D  F  AARNI N+++LP  G 
Sbjct: 121 ELVVIEAATVAEAKTALLAKQLSNLGWKRALVIDGAAVDEGFARAARNIANLDILPSMGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K+A+EALE R K
Sbjct: 181 NVYDILRSDTLVLTKAAVEALEARLK 206


>gi|46205275|ref|ZP_00048760.2| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 206

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/206 (51%), Positives = 145/206 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L +  LDG   G + ++E IF L+P+  IL R++R+Q  ++R G    K RS+V  T 
Sbjct: 1   MKLDITTLDGGSAGSVELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH + S  QFRGGG+AFGPV     H LPKKVR+LAL+HALS K  ++
Sbjct: 61  KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSTKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D++     KTK ++ RF  L LS+ALII G ++D NF  AAR IP I++LPVQGI
Sbjct: 121 TLIVVDDIKVDSHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+++A++ALE+RFK
Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206


>gi|222085676|ref|YP_002544206.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84]
 gi|254803707|sp|B9JDS9|RL4_AGRRK RecName: Full=50S ribosomal protein L4
 gi|221723124|gb|ACM26280.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84]
          Length = 206

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 124/206 (60%), Positives = 159/206 (77%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ L+G+D G +S+S+ IF L+P++ I+ARV+RWQ  +KR G  K++GR+EV+ TG
Sbjct: 1   MELNVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKKRQGTHKAQGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LR ALS K  + 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKLKAE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++++DNLV+ + KTK L   F  L L+NAL I G +LD NF+LAA NIPNI++LPVQGI
Sbjct: 121 DVIILDNLVAADAKTKALAGAFETLGLTNALFIGGAELDSNFKLAAANIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|169350796|ref|ZP_02867734.1| hypothetical protein CLOSPI_01570 [Clostridium spiroforme DSM 1552]
 gi|169292382|gb|EDS74515.1| hypothetical protein CLOSPI_01570 [Clostridium spiroforme DSM 1552]
          Length = 207

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+++ V N +G +   + ++E +F ++P +  L  ++  Q    R G  K K R+EV+  
Sbjct: 1   MLKVKVYNQEGAEVKDLELNEAVFGIEPNKQALFDMVLLQRASLRQGTHKVKNRTEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      L +KVR LAL+ ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYKFKLNRKVRRLALKSALSTKIID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+ M ++ +     KTK +V     LD     +I   ++D N   +A NIP + LL  + 
Sbjct: 121 NEFMALEAIKFDAPKTKEMVKVLANLDAPTKTLIVVDEIDENVARSANNIPGVKLLDARR 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   KL+++++AI+++E+  
Sbjct: 181 VNVYDILNSDKLIMTEAAIKSVEEVL 206


>gi|290581288|ref|YP_003485680.1| 50S ribosomal protein L4 [Streptococcus mutans NN2025]
 gi|254998187|dbj|BAH88788.1| 50S ribosomal protein L4 [Streptococcus mutans NN2025]
          Length = 207

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G +++++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVTLNDAIFGIEPNESVVFDVIISQRANLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              + +D L  +  KTK   T   AL++ + +++   + ++  +L+ARN+PN+ +     
Sbjct: 121 EKFVAVDALSFEAPKTKEFATVLAALNVDSKVLVILEEGNQAAELSARNLPNVKVATAAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISNIEEVL 206


>gi|255526579|ref|ZP_05393486.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7]
 gi|296187267|ref|ZP_06855663.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans
           P7]
 gi|255509687|gb|EET86020.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7]
 gi|296048138|gb|EFG87576.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans
           P7]
          Length = 206

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G+  G + +S+++F ++  Q  L +V+      KR G   +K RSEV+  
Sbjct: 1   MPTVGLFNKEGKKVGDVQLSDNVFGVEVNQYALHQVVVALLANKRQGTQSAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F   P     ++PK +R +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIHGGMVFAVKPRDYRTSVPKSMRRVAMKSALTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+V+++L  +  KTK +V    A   +   +I   + + N   +ARNI  + +LPV  
Sbjct: 121 EQIVVLESLELEAPKTKEVVKMLDA-LNAKKTLIVTSESNENAYKSARNIQGVEILPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L+  KLV++K A+  +E+ +
Sbjct: 180 LNVYDLLKYEKLVITKDAVSKIEEVY 205


>gi|319938506|ref|ZP_08012900.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1]
 gi|319806422|gb|EFW03089.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1]
          Length = 207

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 120/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++++V N +G+      ++E +F ++P    +  ++  Q    R G  K K R+EV   
Sbjct: 1   MLKVAVYNQEGKQVKDTELNELVFGIEPNNQAIFDMVLLQRASWRQGTHKVKNRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      L +KVR LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYTFKLNRKVRQLALKSALSQKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++ V+D +     KTK ++     L+ +   +I   +++ N  L+ARNIP + ++  +G
Sbjct: 121 NEMTVLDTITLNAPKTKDMIKVLENLEANRKTLIVMDEVNENVTLSARNIPGVKVIDSKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL C+KLV+++ AI+A+E+  
Sbjct: 181 LNVYDILDCTKLVITEGAIKAVEEVL 206


>gi|28212174|ref|NP_783118.1| 50S ribosomal protein L4 [Clostridium tetani E88]
 gi|46577246|sp|Q890P0|RL4_CLOTE RecName: Full=50S ribosomal protein L4
 gi|28204618|gb|AAO37055.1| LSU ribosomal protein L1E(= L4P) [Clostridium tetani E88]
          Length = 206

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 118/206 (57%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G+  G   +S+ +F ++  + +L +V+  Q   KR G   SK R+EV+  
Sbjct: 1   MPTVGLFNKEGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     A+PK ++ +A++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+++++L +   KTK +V    A + +   +I   + ++N   +ARNI  + +LPV  
Sbjct: 121 NEIVILESLEADAPKTKEIVKMLAAFN-AKKTLIVTEESNKNIYKSARNIEGVTVLPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDILR  K +++K A+  +E+ +
Sbjct: 180 INVYDILRYDKFIITKDAVSKIEEVY 205


>gi|116495946|ref|YP_807680.1| 50S ribosomal protein L4 [Lactobacillus casei ATCC 334]
 gi|122262654|sp|Q034Y4|RL4_LACC3 RecName: Full=50S ribosomal protein L4
 gi|116106096|gb|ABJ71238.1| LSU ribosomal protein L4P [Lactobacillus casei ATCC 334]
          Length = 207

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 117/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG + G + +++ I+A++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MANVTLYKQDGSENGKVELNDAIWAVEPNENVVFDAVVMQRDSLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +D++V+D L     KTK   T    L +S+  ++     +     AARN+PN+ ++P +G
Sbjct: 121 SDLVVVDGLNFDAPKTKAFATVLDGLKVSDKALVVLEDGNEVAAKAARNLPNVKVVPAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   KL+L++SA++ +E+  
Sbjct: 181 INVLDVVDYKKLILTQSALQKIEEVL 206


>gi|187934984|ref|YP_001884474.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B]
 gi|188589298|ref|YP_001919673.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43]
 gi|251779469|ref|ZP_04822389.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|226730642|sp|B2UYB1|RL4_CLOBA RecName: Full=50S ribosomal protein L4
 gi|226730643|sp|B2TIH6|RL4_CLOBB RecName: Full=50S ribosomal protein L4
 gi|187723137|gb|ACD24358.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B]
 gi|188499579|gb|ACD52715.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43]
 gi|243083784|gb|EES49674.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 206

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G+  G I ++ ++F ++  +  L +V+      KR G   +K R+EV   
Sbjct: 1   MPTVGLFNQEGKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+++L  +  KTK  +    A + +   +I   + +     +ARNI  ++++PV  
Sbjct: 121 GQMVVLESLSFEAPKTKQFIEMLSAFN-AKKTLIITAESNEAVYKSARNIQGVSVIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  KL+++K A+  +E+ +
Sbjct: 180 INVYDLLKFEKLIITKDAVSKIEEVY 205


>gi|84685436|ref|ZP_01013334.1| 50S ribosomal protein L4 [Maritimibacter alkaliphilus HTCC2654]
 gi|84666593|gb|EAQ13065.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2654]
          Length = 205

 Score =  209 bits (532), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 122/206 (59%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + E +F L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGSVELDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H L KK R L L+HALS K    
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLKHALSAKAQEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+VID   +   KTK L    + L    ALIIDG +++ NF  AARNI  +++LP  G 
Sbjct: 121 AIVVIDTAEAD-GKTKVLAKLVKDLGWKRALIIDGAEVNENFAKAARNIEGLDVLPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205


>gi|81429376|ref|YP_396377.1| 50S ribosomal protein L4 [Lactobacillus sakei subsp. sakei 23K]
 gi|109893600|sp|Q38UR3|RL4_LACSS RecName: Full=50S ribosomal protein L4
 gi|78611019|emb|CAI56071.1| 50S ribosomal protein L4 [Lactobacillus sakei subsp. sakei 23K]
          Length = 207

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G + +++ I+A++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MANVTLFKQDGSQNGNVELNDSIWAIEPNENVVFDAIIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ND++V+D+      KTK        LD++  +++     +    L+ARN+PN+ ++P  G
Sbjct: 121 NDLIVVDSFSFDAPKTKEFAEVLNKLDVNTKVLVVLEDGNDFTALSARNLPNVTVVPADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++   KL+L+++A+  +E+  
Sbjct: 181 INVLDVVGNQKLILTQAALSKIEEVL 206


>gi|188581376|ref|YP_001924821.1| 50S ribosomal protein L4 [Methylobacterium populi BJ001]
 gi|226730691|sp|B1ZLK5|RL4_METPB RecName: Full=50S ribosomal protein L4
 gi|179344874|gb|ACB80286.1| ribosomal protein L4/L1e [Methylobacterium populi BJ001]
          Length = 206

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/206 (51%), Positives = 145/206 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L +  LDG   G + ++E IF L+P+  IL R++R+Q  ++R G    K RS+V  T 
Sbjct: 1   MKLDITTLDGGSAGSLELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH + S  QFRGGG+AFGPV     H LPKKVR+LAL+HALS K  ++
Sbjct: 61  KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSSKAKTS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D++     KTK ++ RF  L LS+ALII G ++D NF  AAR IP I++LPVQGI
Sbjct: 121 TLIVVDDIKVDSHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+++A++ALE+RFK
Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206


>gi|23014087|ref|ZP_00053924.1| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 206

 Score =  209 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 128/206 (62%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ +V +LD +  G I ++++IF L  +  IL R + WQ  +++ G  K+K  SE++ T 
Sbjct: 1   MKTNVISLDNQTVGEIELADEIFGLPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKG GRAR  S   +QFRGG   FGPV     H LPKKVR LAL+ ALS K    
Sbjct: 61  KKPFAQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN  +   KTK L  R   L LS+ L IDG  +D NF LA+RNIP +++LP QG 
Sbjct: 121 KLIVVDNATAGSPKTKDLAARLGKLGLSSVLFIDGAAVDGNFALASRNIPYVDVLPQQGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K A+ ALE R K
Sbjct: 181 NVYDILRRETLVLTKDAVAALEARLK 206


>gi|163760800|ref|ZP_02167879.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43]
 gi|162281844|gb|EDQ32136.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43]
          Length = 206

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 116/206 (56%), Positives = 157/206 (76%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V  L+G+  G IS+S+ IF L+P+Q ++ R++RWQ  +K+ G  K+ GRSE++ TG
Sbjct: 1   MDLTVTTLEGKSAGKISLSDAIFGLEPRQDLIQRIVRWQLAKKQQGGHKTLGRSEISRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARH + S  QFRGGG+A GPV     H LPKKVR+LALRHALS K  ++
Sbjct: 61  AKMFKQKGTGRARHHAASAPQFRGGGRAHGPVVRSHAHDLPKKVRALALRHALSAKAQAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           DI+++D+L + E KTK L      + L+NAL I G +LD+NF+LAA+NIPN+++LPVQGI
Sbjct: 121 DIIIVDSLTAGEAKTKALTGSLDKMGLNNALFIGGAELDQNFRLAAKNIPNVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK A+ ALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKDAVAALEERFK 206


>gi|261264935|gb|ACX55826.1| 50S ribosomal protein L4 [Staphylococcus epidermidis]
          Length = 207

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +++ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   ++D    +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTESEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+     ++++++A + +E+  
Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEEVL 206


>gi|315925255|ref|ZP_07921469.1| 50S ribosomal protein L4 [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621489|gb|EFV01456.1| 50S ribosomal protein L4 [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 206

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + ++ G       +S+ +F ++P + ++ +V+  Q   KR G   +K RSEV   
Sbjct: 1   MPKIDILDMKGNVVDSAELSDRVFGIEPNEPVVHQVVVAQLANKRQGTKGTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P        + KKVR+LA+R   S KF  
Sbjct: 61  GRKPWRQKGTGRARAGSSRSPLWIGGGVIFAPKARDFSKKVNKKVRNLAMRSVFSAKFAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++ V+D L     KTK ++    A+D   AL++   ++D    L+ARNIP      V  
Sbjct: 121 KELRVVDALNFDAPKTKDMIAALAAIDAGKALVVTPEKVDN-VYLSARNIPKTRATTVAE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L+   LVL+K A+  +E+ +
Sbjct: 180 LNVYDMLKYDVLVLTKDALAKIEEVY 205


>gi|170748637|ref|YP_001754897.1| ribosomal protein L4/L1e [Methylobacterium radiotolerans JCM 2831]
 gi|226730692|sp|B1LWS7|RL4_METRJ RecName: Full=50S ribosomal protein L4
 gi|170655159|gb|ACB24214.1| ribosomal protein L4/L1e [Methylobacterium radiotolerans JCM 2831]
          Length = 206

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/206 (52%), Positives = 149/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG   G + ++E+IF L+P+  +L R++RWQ  ++R G    + RS+V  T 
Sbjct: 1   MKLDIKTLDGAGAGSVELNEEIFGLEPRADLLQRMVRWQLAKRRAGTHAVQNRSDVNRTR 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH + S  QFRGGG+AFGPV     H LPKKVR+LALRHALS K  ++
Sbjct: 61  KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALRHALSSKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D++  ++ KTK L+ RF  + LSNALII G ++D NF  AAR IP I++LPVQGI
Sbjct: 121 TLIVVDDIKIEDHKTKGLIERFGKMGLSNALIIGGAEVDVNFGRAARAIPQIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K+A++ALE+RFK
Sbjct: 181 NVYDILRRDTLVLTKAAVDALEERFK 206


>gi|228474532|ref|ZP_04059263.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis
           SK119]
 gi|314935833|ref|ZP_07843185.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis
           subsp. hominis C80]
 gi|228271195|gb|EEK12563.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis
           SK119]
 gi|313656398|gb|EFS20138.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis
           subsp. hominis C80]
          Length = 207

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+  ++D       KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NNFTIVDTFGFDAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVSTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     +++++SA + +E+  
Sbjct: 181 LNVLDITSADSVIITESAAKKVEEVL 206


>gi|83854977|ref|ZP_00948507.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1]
 gi|83842820|gb|EAP81987.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1]
          Length = 205

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 126/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + E +F L+P+  IL RV+RWQ    + G  K K RSEV+Y+ 
Sbjct: 1   MKLDVIKLDGGAAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++ID+  S   KT  L  + + L    ALIIDG  ++ NF  AARNI  +++LP  G 
Sbjct: 121 NLVIIDDATSD-GKTAALAKQVKNLGWKRALIIDGASVNENFLQAARNIEGLDILPTMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ IEALE R K
Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205


>gi|225574701|ref|ZP_03783311.1| hypothetical protein RUMHYD_02778 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038091|gb|EEG48337.1| hypothetical protein RUMHYD_02778 [Blautia hydrogenotrophica DSM
           10507]
          Length = 206

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G + G I +++ +F ++  + ++   +  Q   KR G  K+K RSEV   
Sbjct: 1   MANVSVLNMEGNEVGTIELNDAVFGVEINEHLVHLAVVRQLANKRQGTQKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + +K R  AL+ AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYSVKMNRKERLAALKSALTAKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D+L  +  KTK +      L  +   ++    +D+N  L+ARNIP +    V  
Sbjct: 121 NKLIVVDDLKFEAIKTKDMQNVLNNLK-AEKALVVTPAVDQNVVLSARNIPEVQTATVNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+++   LVL+K A+ ++E+ +
Sbjct: 180 INVYDVMKHKTLVLTKDAVASIEEVY 205


>gi|190891356|ref|YP_001977898.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652]
 gi|226730712|sp|B3PWS2|RL4_RHIE6 RecName: Full=50S ribosomal protein L4
 gi|190696635|gb|ACE90720.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652]
          Length = 206

 Score =  208 bits (530), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 127/206 (61%), Positives = 163/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ  +K+ G  K+KGR+EV+ TG
Sbjct: 1   MELNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VIDNLV+ E KTK L + F  L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI
Sbjct: 121 DVIVIDNLVATEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206


>gi|313891529|ref|ZP_07825139.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E]
 gi|313119988|gb|EFR43170.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E]
          Length = 207

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 121/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G+  G + +++ IF ++  + ++ + +  Q   +R+G   +K R  V   
Sbjct: 1   MPKVTLYNIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      + KK R LA++ ALS+K  +
Sbjct: 61  GKKPWRQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++VID +  +  KTK +V   +A + S ALIIDG +   N  L+ARNIP +  +   G
Sbjct: 121 NELIVIDQINFEAPKTKQVVEMMKAFEASKALIIDGGKAVENTVLSARNIPGVKAIGTCG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN+YD++  +KL +++ A++ +E+  
Sbjct: 181 INIYDLVHYTKLFITQEAVKQIEEVL 206


>gi|27468741|ref|NP_765378.1| 50S ribosomal protein L4 [Staphylococcus epidermidis ATCC 12228]
 gi|57867722|ref|YP_189393.1| 50S ribosomal protein L4 [Staphylococcus epidermidis RP62A]
 gi|242243948|ref|ZP_04798391.1| 50S ribosomal protein L4 [Staphylococcus epidermidis W23144]
 gi|251812048|ref|ZP_04826521.1| 50S ribosomal protein L4 [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875343|ref|ZP_06284216.1| ribosomal protein L4/L1 family protein [Staphylococcus epidermidis
           SK135]
 gi|293368434|ref|ZP_06615058.1| 50S ribosomal protein L4 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|46577254|sp|Q8CRG1|RL4_STAES RecName: Full=50S ribosomal protein L4
 gi|81673579|sp|Q5HM00|RL4_STAEQ RecName: Full=50S ribosomal protein L4
 gi|27316289|gb|AAO05464.1|AE016750_69 50S ribosomal protein L4 [Staphylococcus epidermidis ATCC 12228]
 gi|57638380|gb|AAW55168.1| ribosomal protein L4 [Staphylococcus epidermidis RP62A]
 gi|242232581|gb|EES34893.1| 50S ribosomal protein L4 [Staphylococcus epidermidis W23144]
 gi|251804382|gb|EES57039.1| 50S ribosomal protein L4 [Staphylococcus epidermidis BCM-HMP0060]
 gi|261264939|gb|ACX55828.1| 50S ribosomal protein L4 [Staphylococcus epidermidis]
 gi|281296108|gb|EFA88629.1| ribosomal protein L4/L1 family protein [Staphylococcus epidermidis
           SK135]
 gi|291317392|gb|EFE57814.1| 50S ribosomal protein L4 [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319400622|gb|EFV88847.1| 50S ribosomal protein L4 [Staphylococcus epidermidis FRI909]
 gi|329736448|gb|EGG72716.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU028]
 gi|329737013|gb|EGG73268.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU045]
          Length = 207

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +++ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   ++D    +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+     ++++++A + +E+  
Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEEVL 206


>gi|271962633|ref|YP_003336829.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021]
 gi|270505808|gb|ACZ84086.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021]
          Length = 215

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V ++ G   G + +  DIF  K    ++ +V+  Q   +R G  K+K R EV+  
Sbjct: 1   MSTIDVLDVSGAKTGTVDLPGDIFDAKVNIPLIHQVVVAQLAARRQGTHKAKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP+P       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGIVHGPLPRDYSQKTPKKMKAAALRGALSDRANG 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             + V+  LV  +  KTK  +   R +  + ++++   + D    L+ RN P ++LL   
Sbjct: 121 GRVHVVSALVQGETPKTKAALESLRKITQTRSVLVVVDEGDELTWLSLRNAPEVHLLDAG 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YD+L    +V ++ A + +  R 
Sbjct: 181 QLNTYDVLCYDDVVFTQEAYDQVVTRL 207


>gi|331268414|ref|YP_004394906.1| 50S ribosomal protein L4/L1e [Clostridium botulinum BKT015925]
 gi|329124964|gb|AEB74909.1| ribosomal protein L4/L1e [Clostridium botulinum BKT015925]
          Length = 206

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G+  G + ++E +FA++    +L +V+  Q   KR G   +K R+EV+  
Sbjct: 1   MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     A+PK +R +A++ AL+ K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPREYRMAIPKSMRRVAMKSALTSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V++NL  +  KTK +V    A + +   +I   + +     + RNI    ++PV  
Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFE-AKKPLIVVAESNEVVYKSIRNIEGATIVPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+  K +++K A+  +E+ +
Sbjct: 180 INVYDILKHDKFIITKDAVAKIEEVY 205


>gi|302871499|ref|YP_003840135.1| ribosomal protein L4/L1e [Caldicellulosiruptor obsidiansis OB47]
 gi|312135495|ref|YP_004002833.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL]
 gi|302574358|gb|ADL42149.1| ribosomal protein L4/L1e [Caldicellulosiruptor obsidiansis OB47]
 gi|311775546|gb|ADQ05033.1| ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL]
          Length = 208

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G+  G I +++ IF +     +L + +      +R G   +K R+EV   
Sbjct: 1   MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  F   P      LPKKVR LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+D     + KTK ++   + L   +   +I   + +   Q + RNIP +  L V 
Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEKNEYLQKSTRNIPEVKTLQVG 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+DIL+  K V+ + A++ +E+ +
Sbjct: 181 NLNVFDILKYDKFVILQDAVKKVEEVY 207


>gi|253681900|ref|ZP_04862697.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873]
 gi|253561612|gb|EES91064.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873]
          Length = 206

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G+  G + ++E +FA++    +L +V+  Q   KR G   +K R+EV+  
Sbjct: 1   MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     A+PK ++ +A++ AL+ K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMAIPKSMKRVAMKSALTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V++NL  +  KTK +V    A + +   +I   + +     + RNI    ++PV  
Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFE-AKKPLIVVAESNEVVYKSIRNIEGATVVPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+  K +++K A+  +E+ +
Sbjct: 180 INVYDILKHDKFIITKDAVAKIEEVY 205


>gi|325663061|ref|ZP_08151511.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086668|ref|ZP_08335745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325470515|gb|EGC73745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330409834|gb|EGG89269.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 206

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +S+ +F ++  + +L   +  Q   KR G  K+K RSEV   
Sbjct: 1   MANVSVYNIEGKEVGTIDLSDAVFGVEVNEHLLHMAVVSQLANKRQGTQKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              +V+D +   E KTK               ++     ++N +L+ARNIP++       
Sbjct: 121 KKFIVLDEINFGEIKTKNFQNVLNN-LNVAKALVVLEDGNKNAELSARNIPSVKTARTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+A+E +E+ +
Sbjct: 180 INVYDILKYNTVIATKAAVETIEEVY 205


>gi|182418832|ref|ZP_02950097.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521]
 gi|237666492|ref|ZP_04526477.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377329|gb|EDT74890.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521]
 gi|237657691|gb|EEP55246.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 206

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N++G+    + ++E +FA +  Q  L +V+      KR G   +K RSEV   
Sbjct: 1   MPTVGVYNIEGKKVSDMELNESVFATEVNQYALHQVVVALLANKRQGTQSTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     + PK +R +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSTPKSMRKVAMKSALTSKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+++L     KTK +V    AL+ +   +I   + +     +ARNI  ++++P   
Sbjct: 121 NSMIVLESLNFDAPKTKNVVAMLNALE-APKALIITAESNEAVYKSARNIQGVSVIPANN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  K++++K A+  +E+ +
Sbjct: 180 INVYDLLKFDKVIMTKDAVSKIEEVY 205


>gi|116493162|ref|YP_804897.1| 50S ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745]
 gi|122265374|sp|Q03EB7|RL4_PEDPA RecName: Full=50S ribosomal protein L4
 gi|116103312|gb|ABJ68455.1| LSU ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745]
          Length = 207

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +S+   DG   G + ++ DIF ++P   ++   +  Q    R G    K RS V   
Sbjct: 1   MANVSLFKQDGTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    +++PKK+R LAL+  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D    +  KTK        L++    ++   + + +  LAARN+ N+ ++  +G
Sbjct: 121 ESLVVVDEFKFETPKTKDFAQSLGNLNVDKKALLVLEEDNESAVLAARNLSNVKIVEPEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV DI+   KLV+++ A+  +E+  
Sbjct: 181 INVLDIMNSDKLVITQKALSQVEEAL 206


>gi|70725804|ref|YP_252718.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435]
 gi|82581594|sp|Q4L8B3|RL4_STAHJ RecName: Full=50S ribosomal protein L4
 gi|68446528|dbj|BAE04112.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435]
          Length = 207

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+  ++DN   +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NNFTIVDNFGFEAPKTKEFKNVLTTLEQPKKVLVVTDSEDVNVELSARNIPGVQVSTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     +++++SA + +E+  
Sbjct: 181 LNVLDITSADSVIITESAAKKVEEVL 206


>gi|83941499|ref|ZP_00953961.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36]
 gi|83847319|gb|EAP85194.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36]
          Length = 205

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + E +F L+P+  IL RV+RWQ    + G  K K RSEV+Y+ 
Sbjct: 1   MKLDVIKLDGGAAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++ID++ S   KT  L  + + L    ALIIDG  ++ NF  AARNI  +++LP  G 
Sbjct: 121 NLVIIDDVTSD-GKTAALAKQVKNLGWKRALIIDGASVNENFLQAARNIEGLDILPTMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ IEALE R K
Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205


>gi|289449461|ref|YP_003475783.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184008|gb|ADC90433.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 207

 Score =  208 bits (529), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 127/206 (61%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V NLDG   G I +S+ +F ++P Q ++ +V++ Q   +R G   +K RSEV+  
Sbjct: 1   MAKVDVYNLDGAVIGQIELSDAVFGIEPNQSVMHQVVKNQLANRRQGTGSTKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G + + QKGTGRARH S   +Q+ GGG  FGP P    + + KKVR LA++ ALS K   
Sbjct: 61  GKRPWRQKGTGRARHGSTRSAQYVGGGIIFGPKPRDYHYTVSKKVRRLAIKSALSTKLQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++N    E KTK  VT  + L++++ +++   + + N +LAARNI  + L     
Sbjct: 121 KQLIVVENFELAEAKTKNFVTALKKLNVTDRVLVVENEKNVNLELAARNIAKVQLSRANT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+D+L+   L++SK+A+E +++ +
Sbjct: 181 INVFDLLKNEVLLISKAAVEKIQEVY 206


>gi|289435897|ref|YP_003465769.1| hypothetical protein lse_2536 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289172141|emb|CBH28687.1| rplD [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313636112|gb|EFS01986.1| ribosomal protein L4/L1 family [Listeria seeligeri FSL S4-171]
          Length = 207

 Score =  208 bits (528), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LS+   DG + G I++++ +F ++P + ++  V+  Q    R G  K K RSEV   
Sbjct: 1   MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++ L     KTK      + + +    +I       N +L+ARN+  I ++P + 
Sbjct: 121 EKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVASESENVELSARNLQGITVIPAES 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+V ++ +  KL+++K+A+E +E+  
Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEEVL 206


>gi|261264931|gb|ACX55824.1| 50S ribosomal protein L4 [Staphylococcus epidermidis]
          Length = 207

 Score =  208 bits (528), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +++ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + Q GTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQNGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   ++D    +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+     ++++++A + +E+  
Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEEVL 206


>gi|222148367|ref|YP_002549324.1| 50S ribosomal protein L4 [Agrobacterium vitis S4]
 gi|254803708|sp|B9JVN8|RL4_AGRVS RecName: Full=50S ribosomal protein L4
 gi|221735355|gb|ACM36318.1| 50S ribosomal protein L4 [Agrobacterium vitis S4]
          Length = 206

 Score =  208 bits (528), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 125/206 (60%), Positives = 161/206 (78%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ L+G D G +S+S+ IF L+P+Q I+AR++RWQ  +K+ G  K+K R+EV+ TG
Sbjct: 1   MELNVKTLEGTDAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+LALRHALS KF ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALALRHALSAKFKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D LV+ + KTK  V  F AL L NAL+I G +LD NF+LAA NIPNI++LPVQGI
Sbjct: 121 ELIIVDQLVAADAKTKAAVGVFEALGLKNALVIGGVELDVNFKLAAANIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|86357306|ref|YP_469198.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42]
 gi|109893627|sp|Q2K9L5|RL4_RHIEC RecName: Full=50S ribosomal protein L4
 gi|86281408|gb|ABC90471.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42]
 gi|327191387|gb|EGE58413.1| 50S ribosomal protein L4 [Rhizobium etli CNPAF512]
          Length = 206

 Score =  208 bits (528), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 127/206 (61%), Positives = 164/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ  +K+ G  K+KGR+EV+ TG
Sbjct: 1   MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VIDNLV+ E KTK L + F  L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI
Sbjct: 121 DVIVIDNLVAAEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206


>gi|322410859|gb|EFY01767.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 207

 Score =  208 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALGIDTKVLVLIEEGNEFAALSARNLPNVTVATAAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI A+E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISAIEEVL 206


>gi|168187813|ref|ZP_02622448.1| ribosomal protein L4/L1 family [Clostridium botulinum C str.
           Eklund]
 gi|169294356|gb|EDS76489.1| ribosomal protein L4/L1 family [Clostridium botulinum C str.
           Eklund]
          Length = 206

 Score =  208 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G+  G + +++ +FA++  + +L +V+  Q   KR G   +K R+EV+  
Sbjct: 1   MPTVDLYNREGQKVGDLQLADTVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A++ AL+ K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+++L     KTK +V    A + S   +I   + +     + RNI    ++PV  
Sbjct: 121 KELVVLESLELDAPKTKEMVKMINAFE-SKKPLIVVPESNEVIYKSVRNIEGATVVPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+  K +++K A+  +E+ +
Sbjct: 180 INVYDILKHDKFIITKEAVSKIEEVY 205


>gi|16801841|ref|NP_472109.1| 50S ribosomal protein L4 [Listeria innocua Clip11262]
 gi|16804669|ref|NP_466154.1| 50S ribosomal protein L4 [Listeria monocytogenes EGD-e]
 gi|46908803|ref|YP_015192.1| 50S ribosomal protein L4 [Listeria monocytogenes str. 4b F2365]
 gi|217966170|ref|YP_002351848.1| ribosomal protein L4/L1 family [Listeria monocytogenes HCC23]
 gi|224499304|ref|ZP_03667653.1| 50S ribosomal protein L4 [Listeria monocytogenes Finland 1988]
 gi|224503575|ref|ZP_03671882.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL R2-561]
 gi|226225176|ref|YP_002759283.1| ribosomal protein L4 [Listeria monocytogenes Clip81459]
 gi|254825008|ref|ZP_05230009.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194]
 gi|254829080|ref|ZP_05233767.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165]
 gi|254830937|ref|ZP_05235592.1| 50S ribosomal protein L4 [Listeria monocytogenes 10403S]
 gi|254854163|ref|ZP_05243511.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503]
 gi|254899918|ref|ZP_05259842.1| 50S ribosomal protein L4 [Listeria monocytogenes J0161]
 gi|254912876|ref|ZP_05262888.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818]
 gi|254931099|ref|ZP_05264458.1| ribosomal protein L4 [Listeria monocytogenes HPB2262]
 gi|254937256|ref|ZP_05268953.1| ribosomal protein L4 [Listeria monocytogenes F6900]
 gi|254991853|ref|ZP_05274043.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-064]
 gi|255017640|ref|ZP_05289766.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL F2-515]
 gi|255022701|ref|ZP_05294687.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208]
 gi|255027145|ref|ZP_05299131.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-003]
 gi|255029694|ref|ZP_05301645.1| 50S ribosomal protein L4 [Listeria monocytogenes LO28]
 gi|255519641|ref|ZP_05386878.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-175]
 gi|284800483|ref|YP_003412348.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578]
 gi|284993669|ref|YP_003415437.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923]
 gi|290891816|ref|ZP_06554813.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071]
 gi|300763618|ref|ZP_07073616.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017]
 gi|46577145|sp|P61054|RL4_LISIN RecName: Full=50S ribosomal protein L4
 gi|46577146|sp|P61055|RL4_LISMO RecName: Full=50S ribosomal protein L4
 gi|67461151|sp|Q71WE7|RL4_LISMF RecName: Full=50S ribosomal protein L4
 gi|254803741|sp|B8DB09|RL4_LISMH RecName: Full=50S ribosomal protein L4
 gi|259491564|sp|C1KZH9|RL4_LISMC RecName: Full=50S ribosomal protein L4
 gi|16412119|emb|CAD00709.1| ribosomal protein L4 [Listeria monocytogenes EGD-e]
 gi|16415316|emb|CAC98006.1| ribosomal protein L4 [Listeria innocua Clip11262]
 gi|46882076|gb|AAT05369.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|217335440|gb|ACK41234.1| ribosomal protein L4/L1 family [Listeria monocytogenes HCC23]
 gi|225877638|emb|CAS06352.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258601490|gb|EEW14815.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165]
 gi|258607555|gb|EEW20163.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503]
 gi|258609862|gb|EEW22470.1| ribosomal protein L4 [Listeria monocytogenes F6900]
 gi|284056045|gb|ADB66986.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578]
 gi|284059136|gb|ADB70075.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923]
 gi|290558410|gb|EFD91927.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071]
 gi|293582646|gb|EFF94678.1| ribosomal protein L4 [Listeria monocytogenes HPB2262]
 gi|293590875|gb|EFF99209.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818]
 gi|293594249|gb|EFG02010.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194]
 gi|300515895|gb|EFK42944.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017]
 gi|307572220|emb|CAR85399.1| rplD [Listeria monocytogenes L99]
 gi|328469804|gb|EGF40721.1| 50S ribosomal protein L4 [Listeria monocytogenes 220]
          Length = 207

 Score =  208 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LS+   DG + G I++++ +F ++P + ++  V+  Q    R G  K K RSEV   
Sbjct: 1   MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++ L     KTK      + + +    +I       N +L+ARN+  I ++P + 
Sbjct: 121 EKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAES 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+V ++ +  KL+++K+A+E +E+  
Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEEVL 206


>gi|299820956|ref|ZP_07052845.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601]
 gi|299817977|gb|EFI85212.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601]
          Length = 207

 Score =  208 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LS+   DG   G I++++ +F ++P + ++  V+  Q    R G  K K RSEV   
Sbjct: 1   MPKLSLLKQDGTSAGEITLNDAVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLAIKSALSSKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V++NL     KTK      + + +    ++       N +L+ARN+  I ++P + 
Sbjct: 121 ENLLVLENLAFDAPKTKDFAAFLKNISVDTKALVVVAGESDNVELSARNLQGITVIPAES 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+V ++    KL+++K+A+E +E+  
Sbjct: 181 ISVLEVASHDKLIITKAAVEKVEEVL 206


>gi|329731224|gb|EGG67594.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU144]
          Length = 207

 Score =  208 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +++ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVDLNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   ++D    +  KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+     ++++++A + +E+  
Sbjct: 181 LNVLDLTSADSVIITEAAAKKVEEVL 206


>gi|218460209|ref|ZP_03500300.1| 50S ribosomal protein L4 [Rhizobium etli Kim 5]
          Length = 206

 Score =  208 bits (528), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 126/206 (61%), Positives = 164/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ  +K+ G  K+KGR+EV+ TG
Sbjct: 1   MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VIDNL++ E KTK L + F  L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI
Sbjct: 121 DVIVIDNLIAAEAKTKALASAFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206


>gi|218672011|ref|ZP_03521680.1| 50S ribosomal protein L4 [Rhizobium etli GR56]
          Length = 206

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 127/206 (61%), Positives = 164/206 (79%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ L+G+D G +S+S++IF L+P++ ILARV+RWQ  +K+ G  K+KGR+EV+ TG
Sbjct: 1   MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VIDNLV+ E KTK L + F  L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI
Sbjct: 121 DVIVIDNLVAAEAKTKALASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206


>gi|160881784|ref|YP_001560752.1| ribosomal protein L4/L1e [Clostridium phytofermentans ISDg]
 gi|189029497|sp|A9KJJ3|RL4_CLOPH RecName: Full=50S ribosomal protein L4
 gi|160430450|gb|ABX44013.1| ribosomal protein L4/L1e [Clostridium phytofermentans ISDg]
          Length = 206

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N++G++ G + +++ IF ++  + ++   +  Q   KR G   +K R+EV+  
Sbjct: 1   MANVKVYNIEGKEVGSLELNDAIFGVEVNEHLMHMAVVSQLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F P P      + +K +SLA++ AL+ +  +
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++   E KTK        L   N  ++   + D N  L+ARNIP +       
Sbjct: 121 QKLIVLDSMNMDEIKTKKFKAVLENLK-VNKALVVLDKKDENVILSARNIPTVRTATSNA 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDI++   LV++K A+  +E+ +
Sbjct: 180 INVYDIVKYDTLVITKDAVAQIEEVY 205


>gi|288957423|ref|YP_003447764.1| large subunit ribosomal protein L4 [Azospirillum sp. B510]
 gi|288909731|dbj|BAI71220.1| large subunit ribosomal protein L4 [Azospirillum sp. B510]
          Length = 206

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 132/206 (64%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ +++NL+ E  G I +S+ +F L  +  +LAR++ WQ  ++R G  K+KG SE++ T 
Sbjct: 1   MKATIKNLNNEAVGEIELSDAVFGLPARTDLLARMVNWQLAKRRSGNHKTKGISEISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S    QFRGG   FGPV     H L KKVR LAL+ ALS K    
Sbjct: 61  KKPYGQKGTGRARQGSIRSPQFRGGATIFGPVVRSHAHELTKKVRKLALKTALSAKAAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++   ++  KTK L  R   L L++ALIIDG  LD NF  A+RNIP I++LP QG 
Sbjct: 121 KLIVLEAAAAETHKTKELAARLATLGLTSALIIDGANLDENFAKASRNIPLIDVLPEQGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+++A+E LE R K
Sbjct: 181 NVYDILRRDTLVLTRNAVEQLEARLK 206


>gi|116873997|ref|YP_850778.1| 50S ribosomal protein L4 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123461454|sp|A0ALW7|RL4_LISW6 RecName: Full=50S ribosomal protein L4
 gi|116742875|emb|CAK21999.1| ribosomal protein L4 [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 207

 Score =  207 bits (527), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LS+   DG + G I++++ +F ++P + ++  V+  Q    R G  K K RSEV   
Sbjct: 1   MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++ L     KTK   T  + + +    +I       N +L+ARN+  I ++P + 
Sbjct: 121 EKLVVLEGLTFDAPKTKEFATFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAES 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+V ++ +  KL+++K+A+E +E+  
Sbjct: 181 ISVLEVAKHDKLIITKAAVEKVEEVL 206


>gi|312127227|ref|YP_003992101.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis
           108]
 gi|312793938|ref|YP_004026861.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312877366|ref|ZP_07737331.1| ribosomal protein L4/L1e [Caldicellulosiruptor lactoaceticus 6A]
 gi|311777246|gb|ADQ06732.1| ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis 108]
 gi|311795840|gb|EFR12204.1| ribosomal protein L4/L1e [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181078|gb|ADQ41248.1| ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 208

 Score =  207 bits (527), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G+  G I +++ IF +     +L + +      +R G   +K R+EV   
Sbjct: 1   MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  F   P      LPKKV+ LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+D     + KTK ++   + L   +   +I   + +   Q + RNIP +  L V 
Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEKNEYLQKSTRNIPEVKTLQVG 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+DIL+  K V+ + A++ +E+ +
Sbjct: 181 NLNVFDILKYDKFVILQDAVKKVEEVY 207


>gi|319783321|ref|YP_004142797.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169209|gb|ADV12747.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 206

 Score =  207 bits (527), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 120/206 (58%), Positives = 153/206 (74%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L +  L G+D G + +S++IF L P++ IL RV+RWQ  +K+ G  K+KGR+E+A TG
Sbjct: 1   MDLKITTLGGKDAGKVELSDEIFGLDPREDILQRVVRWQLAKKQQGTHKTKGRAEIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L L+HALS K  S 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHELPKKVRALGLKHALSAKAKSA 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I++ID L   E KTK L+  F  L L+NAL+I G +LD+NF+LAA NIPNI++LP+QGI
Sbjct: 121 SIIIIDELKLTEAKTKALIANFATLGLTNALLIGGAELDKNFKLAATNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206


>gi|319940059|ref|ZP_08014413.1| 50S ribosomal protein L4 [Streptococcus anginosus 1_2_62CV]
 gi|319810773|gb|EFW07100.1| 50S ribosomal protein L4 [Streptococcus anginosus 1_2_62CV]
          Length = 207

 Score =  207 bits (527), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + +D+L     KT        AL L   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVDSLSFTAPKTAEFAKVLAALSLDTKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|315222819|ref|ZP_07864705.1| ribosomal protein L4/L1 family protein [Streptococcus anginosus
           F0211]
 gi|315188122|gb|EFU21851.1| ribosomal protein L4/L1 family protein [Streptococcus anginosus
           F0211]
          Length = 207

 Score =  207 bits (526), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|258646052|ref|ZP_05733521.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM
           15470]
 gi|260403422|gb|EEW96969.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM
           15470]
          Length = 208

 Score =  207 bits (526), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G   G I +++ +F ++  + ++ + +  Q   +R+G   +K R  V   
Sbjct: 1   MPKVTLYNTAGAAAGEIELNDSVFGVEYNEAVIHQAVVRQMANERLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      + +K R LA++ ALS+K  +
Sbjct: 61  GRKPWKQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKDMTRKARQLAVKSALSEKLRA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+D +     KTK +V    A ++    + +DG     N  L+ARNIP +      
Sbjct: 121 NELIVVDAINFDTPKTKEVVKFLAAFNVDGKALIVDGGTASENTVLSARNIPGVKAYAPS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N+YDI+  +KL L++ A++ +E+  
Sbjct: 181 GLNIYDIVHYTKLFLTQDAVKKIEEVL 207


>gi|258513641|ref|YP_003189863.1| 50S ribosomal protein L4 [Desulfotomaculum acetoxidans DSM 771]
 gi|257777346|gb|ACV61240.1| ribosomal protein L4/L1e [Desulfotomaculum acetoxidans DSM 771]
          Length = 206

 Score =  207 bits (526), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ N+ GE  G +++ +++F ++  + +L   +  Q   +R G   +K R EV   
Sbjct: 1   MPTVALFNIKGEQVGEVALKDEVFGIEVNESVLHDAVVMQLAGRRQGTHDTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH +     +RGGG  FGP P    + LPKKVR LAL+ ALS K  +
Sbjct: 61  GKKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRTYKYKLPKKVRRLALKSALSSKVLA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I V+D L  +  KTK +V   + L +  AL++     D N   +ARNIP I  +   G
Sbjct: 121 GNIKVLDALSMEMPKTKEMVGILKNLQVDKALLVI-ADKDMNVIKSARNIPGIKPVGAAG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L+ + LV++K A+  +E+  
Sbjct: 180 VNVYDLLKHTTLVITKDAVSKVEEVL 205


>gi|15674288|ref|NP_268461.1| 50S ribosomal protein L4 [Streptococcus pyogenes M1 GAS]
 gi|19745242|ref|NP_606378.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS8232]
 gi|28894955|ref|NP_801305.1| 50S ribosomal protein L4 [Streptococcus pyogenes SSI-1]
 gi|50913440|ref|YP_059412.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS10394]
 gi|71902710|ref|YP_279513.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS6180]
 gi|71909859|ref|YP_281409.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS5005]
 gi|94987676|ref|YP_595777.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS9429]
 gi|94989556|ref|YP_597656.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS10270]
 gi|139472928|ref|YP_001127643.1| 50S ribosomal protein L4 [Streptococcus pyogenes str. Manfredo]
 gi|251781516|ref|YP_002995817.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|306828259|ref|ZP_07461519.1| ribosomal protein L4/L1 family protein [Streptococcus pyogenes ATCC
           10782]
 gi|46396575|sp|P60831|RL4_STRP8 RecName: Full=50S ribosomal protein L4
 gi|73917536|sp|Q5XED4|RL4_STRP6 RecName: Full=50S ribosomal protein L4
 gi|76363882|sp|P0C0D5|RL4_STRPY RecName: Full=50S ribosomal protein L4
 gi|81171140|sp|P0C0D6|RL4_STRP1 RecName: Full=50S ribosomal protein L4
 gi|109893643|sp|Q48VU8|RL4_STRPM RecName: Full=50S ribosomal protein L4
 gi|166199912|sp|Q1JP16|RL4_STRPC RecName: Full=50S ribosomal protein L4
 gi|166199913|sp|Q1JJ61|RL4_STRPD RecName: Full=50S ribosomal protein L4
 gi|166199914|sp|A2RC15|RL4_STRPG RecName: Full=50S ribosomal protein L4
 gi|13621368|gb|AAK33183.1| 50S ribosomal protein L4 [Streptococcus pyogenes M1 GAS]
 gi|19747336|gb|AAL96877.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS8232]
 gi|28475247|emb|CAD67589.1| ribosomal protein L4 [Streptococcus pyogenes]
 gi|28810200|dbj|BAC63138.1| 50S ribosomal protein L4 [Streptococcus pyogenes SSI-1]
 gi|50902514|gb|AAT86229.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS10394]
 gi|71801805|gb|AAX71158.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS6180]
 gi|71852641|gb|AAZ50664.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS5005]
 gi|94541184|gb|ABF31233.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS9429]
 gi|94543064|gb|ABF33112.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10270]
 gi|134271174|emb|CAM29387.1| 50S ribosomal protein L4 [Streptococcus pyogenes str. Manfredo]
 gi|242390144|dbj|BAH80603.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|304429570|gb|EFM32619.1| ribosomal protein L4/L1 family protein [Streptococcus pyogenes ATCC
           10782]
 gi|323126312|gb|ADX23609.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 207

 Score =  207 bits (526), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206


>gi|302390959|ref|YP_003826779.1| 50S ribosomal protein L4P [Acetohalobium arabaticum DSM 5501]
 gi|302203036|gb|ADL11714.1| LSU ribosomal protein L4P [Acetohalobium arabaticum DSM 5501]
          Length = 209

 Score =  207 bits (526), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 114/207 (55%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M EL++ + +G   G + +++ IF ++  + ++   +  Q   KR G + +K R+EV   
Sbjct: 1   MPELTLFDAEGSQVGEVELNQSIFDVEINEHVVHEAVTAQLAAKRAGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     + GGG  FGP P      +PKKV+ LA++ AL+ K   
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPIWVGGGTTFGPQPRDYSKDIPKKVKRLAVKSALTAKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            ++ V+D     + KTK +V    A       +++   + D N   +ARNIP++ +L   
Sbjct: 121 EELTVVDGFNFDQPKTKQMVKVLEALDAKDKKVLVITAEKDDNLYKSARNIPDVKVLLGS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NVYD+L   +++++K AI+ +E+  
Sbjct: 181 AVNVYDVLDNEQIIITKEAIKKVEEVL 207


>gi|21909577|ref|NP_663845.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS315]
 gi|46396643|sp|Q8K8X3|RL4_STRP3 RecName: Full=50S ribosomal protein L4
 gi|21903758|gb|AAM78648.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS315]
          Length = 207

 Score =  207 bits (526), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206


>gi|225175673|ref|ZP_03729667.1| ribosomal protein L4/L1e [Dethiobacter alkaliphilus AHT 1]
 gi|225169002|gb|EEG77802.1| ribosomal protein L4/L1e [Dethiobacter alkaliphilus AHT 1]
          Length = 208

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 113/207 (54%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  GE +G I +SE +FA K  +  + + +      +R+G +K+K R+EV   
Sbjct: 1   MPKVALYNTAGEQQGEIELSEAVFASKVNEAAMHQAVLAYLANQRLGTAKTKDRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119
           G K + QKGTGRARH S     +RGGG  FGP        +LPKK+R LAL+ AL+ K  
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPIWRGGGITFGPDGRRNYKQSLPKKIRRLALKSALTSKVN 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +  ++V+D L     KTK +V     L+    ++I       N   +ARNIP +      
Sbjct: 121 TGSLIVLDQLAMDAPKTKEMVQVLNNLNTGRKVLIITDTPQENVIKSARNIPGVKTTSTN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NVYDIL    LV+++ A+  +E+ F
Sbjct: 181 QLNVYDILNTDNLVITRDAVVQVEEVF 207


>gi|329121829|ref|ZP_08250444.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965]
 gi|327467767|gb|EGF13259.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965]
          Length = 207

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 121/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G+  G + +++ IF ++  + ++ + +  Q   +R+G   +K R  V   
Sbjct: 1   MPKVTLYNIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      + KK R LA++ ALS+K  +
Sbjct: 61  GKKPWRQKGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++VID +  +  KTK +V   +A + S ALIIDG +   N  L+ARNIP +  +   G
Sbjct: 121 NELIVIDQINFEAPKTKQVVEMMKAFEASKALIIDGGKAVENTVLSARNIPGVKAIGTCG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN+YD++  +KL +++ A++ +E+  
Sbjct: 181 INIYDLVHYTKLFMTQEAVKQIEEVL 206


>gi|313884448|ref|ZP_07818209.1| 50S ribosomal protein L4 [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620232|gb|EFR31660.1| 50S ribosomal protein L4 [Eremococcus coleocola ACS-139-V-Col8]
          Length = 205

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG + G I +++ IF ++P Q ++   +  Q   +R G    K RS V   
Sbjct: 1   MAKVTLFKQDGSNAGEIELNDAIFGIEPNQSVVVDAVIMQRASQRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKK+R LA+R ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKMRRLAIRSALSQKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+ +V+D    +  KTK        LDL+  +++     +     AARNIPN+ ++    
Sbjct: 121 NEFVVVDQ--LEATKTKEFKAILSNLDLNRKVLLVLEDNNEAVFRAARNIPNVKVIDQGN 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++   K++++++A+  +E+  
Sbjct: 179 VNVLDVVNYDKVLITQAALATVEEAL 204


>gi|296449798|ref|ZP_06891567.1| ribosomal protein L4/L1 family protein [Clostridium difficile
           NAP08]
 gi|296877862|ref|ZP_06901884.1| ribosomal protein L4/L1 family protein [Clostridium difficile
           NAP07]
 gi|296261396|gb|EFH08222.1| ribosomal protein L4/L1 family protein [Clostridium difficile
           NAP08]
 gi|296431162|gb|EFH16987.1| ribosomal protein L4/L1 family protein [Clostridium difficile
           NAP07]
          Length = 217

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L+V N+ G++ G I +S+ IF ++    +L  V++ Q   KR G   +K R+EV   
Sbjct: 11  MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 70

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P    + LPKKVR LA++ ALS K  +
Sbjct: 71  GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 130

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D L     KTK        ++ +   ++     + N   +ARNI  +    V  
Sbjct: 131 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNIIKSARNIEGVQTALVNT 190

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+    +++  A++ +E+ +
Sbjct: 191 MNVYDILKYDSFIITTDAVKKVEEVY 216


>gi|170754589|ref|YP_001783120.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra]
 gi|226730644|sp|B1IGF3|RL4_CLOBK RecName: Full=50S ribosomal protein L4
 gi|169119801|gb|ACA43637.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra]
          Length = 206

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +GE  G + +++ +F ++     + +V++     KR G   +K R+EV+  
Sbjct: 1   MPKIDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK ++ +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAMKSALTSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++  +  KTK +V    + D +   +I     + N   +ARNI  + ++PV  
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNSFD-AKKTLIITNNAEENVYKSARNIEGVQIIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  K+V++K A+  +E+ +
Sbjct: 180 INVYDLLKYDKVVITKDAVSKIEEVY 205


>gi|226323011|ref|ZP_03798529.1| hypothetical protein COPCOM_00783 [Coprococcus comes ATCC 27758]
 gi|225208578|gb|EEG90932.1| hypothetical protein COPCOM_00783 [Coprococcus comes ATCC 27758]
          Length = 206

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +++ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK R  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKERRAALKSALTSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              +V+D +   E KTK        L   +  ++     ++N +L+ARNI ++       
Sbjct: 121 KKFIVVDEINFDEIKTKKFQDVLNNLS-VSKALVVLEDGNKNAELSARNIADVKTAKTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+A++A+E+ +
Sbjct: 180 INVYDILKYNTVIATKAAVQAIEEVY 205


>gi|283796558|ref|ZP_06345711.1| ribosomal protein L4/L1 family protein [Clostridium sp. M62/1]
 gi|291075972|gb|EFE13336.1| ribosomal protein L4/L1 family protein [Clostridium sp. M62/1]
 gi|295092548|emb|CBK78655.1| LSU ribosomal protein L4P [Clostridium cf. saccharolyticum K10]
          Length = 204

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 3/206 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G + G + +++ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGNEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK + LAL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYTIRLNKKEKRLALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK      + L +  AL++     D N  L+ARNIP +    V  
Sbjct: 121 NKFIVVDELSFAEIKTKKFAEVLKNLKVEKALVVG---ADANAALSARNIPAVKTASVNT 177

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V +K+A+ ++E+ +
Sbjct: 178 INVYDILKYNTVVATKAAVASIEEVY 203


>gi|209558628|ref|YP_002285100.1| 50S ribosomal protein L4 [Streptococcus pyogenes NZ131]
 gi|226731433|sp|B5XJ37|RL4_STRPZ RecName: Full=50S ribosomal protein L4
 gi|209539829|gb|ACI60405.1| LSU ribosomal protein L4p (L1e) [Streptococcus pyogenes NZ131]
          Length = 207

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206


>gi|254418759|ref|ZP_05032483.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3]
 gi|196184936|gb|EDX79912.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3]
          Length = 212

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 105/206 (50%), Positives = 139/206 (67%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++LSV  LDG+  G + +S+ +F +   +  ILAR + WQ  ++R G  K + R+E + T
Sbjct: 1   MKLSVIQLDGKAAGDVELSDAVFGISDIRGDILARTVNWQLAKRRAGTHKVQTRNENSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH S+   QF GG +AFGPV      +LPKK+R+LALRHALS K  S
Sbjct: 61  GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGFSLPKKIRALALRHALSSKAKS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D +  KE KT  L      L  + ALII G ++D NF LAARNIP+I++LP  G
Sbjct: 121 GDLIVVDTVSVKEAKTASLRETLGKLGWTKALIIAGPEVDTNFGLAARNIPHIDVLPNAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR  KLVL+K+AIEA+E RF
Sbjct: 181 LNVYDILRADKLVLTKAAIEAIEARF 206


>gi|302344355|ref|YP_003808884.1| ribosomal protein L4/L1e [Desulfarculus baarsii DSM 2075]
 gi|301640968|gb|ADK86290.1| ribosomal protein L4/L1e [Desulfarculus baarsii DSM 2075]
          Length = 206

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +   +  G I +++++FA + +  +L  V+ WQ  ++R G + +K RSEV   
Sbjct: 1   MPKVDVYDEKKQKVGEIELADEVFAAEVKAHLLHEVVVWQLAKRRAGTACTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S+    +RGGG   GP P    + +PKKVR  AL+ ALSDK   
Sbjct: 61  GRKPWRQKGTGRARVGSRRSPLWRGGGTTHGPKPRDYDYNVPKKVRKAALKSALSDKLAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +MV+     +  KTK            N  ++     D   + +ARNIP + +L  +G
Sbjct: 121 EKLMVLRGFGLEAIKTKAFAEVLATFQTQNV-LVVTAGPDEVLEKSARNIPMVKVLRAEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR  +L+L + A+  +E+  
Sbjct: 180 LNVYDILRYDRLMLLEPAVGRIEEAL 205


>gi|260577180|ref|ZP_05845157.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2]
 gi|259020654|gb|EEW23973.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2]
          Length = 206

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 128/206 (62%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I++ E +F L+P+  IL RV+RWQ  + + G   +  R+EV+Y+ 
Sbjct: 1   MKLDVIKLDGGKAGSITLDEALFGLEPRADILHRVVRWQRAKAQAGTHSTLTRAEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH SK    FR GG   GP P    H LPKK R+L LRHALS K  + 
Sbjct: 61  KKIYKQKGTGGARHGSKKAPIFRHGGVVKGPTPRSHAHDLPKKFRALGLRHALSAKAQAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D     + K+  L    + L     LIIDG ++D NF LAARNI  I++LP  G 
Sbjct: 121 ELIILDVATMADAKSSILAKAAKELGWKRVLIIDGAEVDANFALAARNIEGIDVLPSMGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+  +LV++K+ +EALE R K
Sbjct: 181 NVYDILKRDQLVITKAGVEALEARLK 206


>gi|304391454|ref|ZP_07373396.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130]
 gi|303295683|gb|EFL90041.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130]
          Length = 206

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 147/206 (71%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V  +DG   G +S+S+ +F L+P+Q I+ R++R+Q  + R G  + +GRS+V  TG
Sbjct: 1   MELDVTKMDGSKSGKVSLSDTVFGLEPRQDIIQRMVRYQLAKARQGTHQVQGRSDVDRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            +MY QKGTG ARH S++  QFRGGGKA GP      H L KK R+LALRHALS K  + 
Sbjct: 61  KRMYRQKGTGGARHHSQAAPQFRGGGKAHGPQSRDHSHDLTKKFRALALRHALSAKAQAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+L +K+ KT  L      L   NAL+I G +LD NF+LAA+NIP+I++LPVQGI
Sbjct: 121 TLVVVDDLAAKDPKTAALRGNLGKLGFENALMIGGSELDNNFKLAAQNIPHIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R + LVLSK+A++ALE+RFK
Sbjct: 181 NVYDIIRRNTLVLSKAAVDALEERFK 206


>gi|126697641|ref|YP_001086538.1| 50S ribosomal protein L4 [Clostridium difficile 630]
 gi|260681847|ref|YP_003213132.1| 50S ribosomal protein L4 [Clostridium difficile CD196]
 gi|260685445|ref|YP_003216578.1| 50S ribosomal protein L4 [Clostridium difficile R20291]
 gi|260208010|emb|CBA60188.1| 50S ribosomal protein L4 [Clostridium difficile CD196]
 gi|260211461|emb|CBE01581.1| 50S ribosomal protein L4 [Clostridium difficile R20291]
          Length = 217

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L+V N+ G++ G I +S+ IF ++    +L  V++ Q   KR G   +K R+EV   
Sbjct: 11  MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 70

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P    + LPKKVR LA++ ALS K  +
Sbjct: 71  GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 130

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D L     KTK        ++ +   ++     + N   +ARNI  +    V  
Sbjct: 131 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNVIKSARNIEGVQTALVNT 190

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+    +++  A++ +E+ +
Sbjct: 191 MNVYDILKYDSFIITTDAVKKVEEVY 216


>gi|323483300|ref|ZP_08088690.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum
           WAL-14163]
 gi|323691202|ref|ZP_08105478.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum
           WAL-14673]
 gi|323403398|gb|EGA95706.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum
           WAL-14163]
 gi|323504721|gb|EGB20507.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum
           WAL-14673]
          Length = 206

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G + G + +++ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGNEVGTLELNDSVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D +   E KTK   +    L   N  ++       N  L+ARNIP +    V  
Sbjct: 121 NKFIVVDAMNFDEIKTKKFQSVMNNLK-VNKALVVLDDTCGNTVLSARNIPTVKTASVNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V +K+A+ ++E+ +
Sbjct: 180 INVYDILKYNTVVATKAAVASIEEVY 205


>gi|255654163|ref|ZP_05399572.1| 50S ribosomal protein L4 [Clostridium difficile QCD-23m63]
          Length = 207

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L+V N+ G++ G I +S+ IF ++    +L  V++ Q   KR G   +K R+EV   
Sbjct: 1   MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P    + LPKKVR LA++ ALS K  +
Sbjct: 61  GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D L     KTK        ++ +   ++     + N   +ARNI  +    V  
Sbjct: 121 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNIIKSARNIEGVQTALVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+    +++  A++ +E+ +
Sbjct: 181 MNVYDILKYDSFIITTDAVKKVEEVY 206


>gi|90962405|ref|YP_536321.1| 50S ribosomal protein L4 [Lactobacillus salivarius UCC118]
 gi|227891545|ref|ZP_04009350.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741]
 gi|301300211|ref|ZP_07206423.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|122448605|sp|Q1WS91|RL4_LACS1 RecName: Full=50S ribosomal protein L4
 gi|90821599|gb|ABE00238.1| LSU ribosomal protein L1E [Lactobacillus salivarius UCC118]
 gi|227866692|gb|EEJ74113.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741]
 gi|300215030|gb|ADJ79446.1| 50S ribosomal protein L4 [Lactobacillus salivarius CECT 5713]
 gi|300852152|gb|EFK79824.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 207

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G + ++E IF ++P   ++   +  Q    R G    K RS V   
Sbjct: 1   MPTVALFKQDGNQNGEVQLNEAIFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LP+KVR LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D L     KTK        L++++ +++     +    LAARN+ N+ ++P +G
Sbjct: 121 ESLVVVDALNFDAPKTKAFAEVLSNLNVNSKVLVVLEDDNTTAALAARNLKNVTVIPAKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++   KLV+++ A+  +E+  
Sbjct: 181 LNVLDVINNDKLVITQGALSQVEEVL 206


>gi|319945834|ref|ZP_08020084.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641]
 gi|319747899|gb|EFW00143.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641]
          Length = 207

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P Q ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANITLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|254487620|ref|ZP_05100825.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101]
 gi|214044489|gb|EEB85127.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101]
          Length = 205

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 126/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I + E +F L+P+  IL RV+RWQ    + G  K K RSEV+Y+ 
Sbjct: 1   MKLDVIKLDGGSAGSIDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FR GG   GP P    H L KK R L LRHALS    + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRSGGIYKGPTPRSHGHELTKKFRKLGLRHALSSMAKNG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++ID+  S   KT  L  + ++L    ALIIDG  ++ NF  AARNI  +++LP  G 
Sbjct: 121 NLVIIDDATSD-GKTSALAKQVKSLGWKRALIIDGASVNENFLQAARNIEGLDILPSVGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ IEALE R K
Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205


>gi|325689230|gb|EGD31236.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK115]
          Length = 207

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++++AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206


>gi|241204166|ref|YP_002975262.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858056|gb|ACS55723.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 206

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 125/206 (60%), Positives = 162/206 (78%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ  +K+ G  K+KGR+E++ TG
Sbjct: 1   MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEISRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VIDNLV+ E KTK L + F  L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI
Sbjct: 121 DVIVIDNLVAAEAKTKSLASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206


>gi|150392159|ref|YP_001322208.1| ribosomal protein L4/L1e [Alkaliphilus metalliredigens QYMF]
 gi|166990944|sp|A6TWI1|RL4_ALKMQ RecName: Full=50S ribosomal protein L4
 gi|149952021|gb|ABR50549.1| ribosomal protein L4/L1e [Alkaliphilus metalliredigens QYMF]
          Length = 207

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N+ G+    + +SE+IF ++  + +L   ++ Q   KR G   +K R+EV   
Sbjct: 1   MPKVAVYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     + GGG  F P P    + LP+KV+ LAL+ AL+ K  +
Sbjct: 61  GRKPWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK +V   + L+    +++   + +     +A NIP +    V  
Sbjct: 121 EELLVLDELSLDTPKTKDMVNILKNLNADKKVLLVVGEKNEAIIKSASNIPGVTTALVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL   K +++K A+E +E+ +
Sbjct: 181 INVYDILNHDKFIITKDAVEKVEEVY 206


>gi|313889542|ref|ZP_07823187.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122051|gb|EFR45145.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus SPIN 20026]
          Length = 207

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVIVEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|296875403|ref|ZP_06899477.1| ribosomal protein L4/L1 family protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|312867055|ref|ZP_07727266.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0405]
 gi|322390661|ref|ZP_08064175.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 903]
 gi|296433596|gb|EFH19369.1| ribosomal protein L4/L1 family protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|311097537|gb|EFQ55770.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0405]
 gi|321142634|gb|EFX38098.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 903]
          Length = 207

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P Q ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|157149830|ref|YP_001451234.1| 50S ribosomal protein L4 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|262283582|ref|ZP_06061347.1| ribosomal protein L4/L1 family protein [Streptococcus sp.
           2_1_36FAA]
 gi|189042889|sp|A8AZM4|RL4_STRGC RecName: Full=50S ribosomal protein L4
 gi|157074624|gb|ABV09307.1| ribosomal protein L4/L1 family [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|262260639|gb|EEY79340.1| ribosomal protein L4/L1 family protein [Streptococcus sp.
           2_1_36FAA]
          Length = 207

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++++AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206


>gi|125716986|ref|YP_001034119.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK36]
 gi|323350941|ref|ZP_08086599.1| 50S ribosomal protein L4 [Streptococcus sanguinis VMC66]
 gi|166199916|sp|A3CK64|RL4_STRSV RecName: Full=50S ribosomal protein L4
 gi|125496903|gb|ABN43569.1| 50S ribosomal protein L4, putative [Streptococcus sanguinis SK36]
 gi|322122923|gb|EFX94629.1| 50S ribosomal protein L4 [Streptococcus sanguinis VMC66]
 gi|324991816|gb|EGC23741.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK405]
 gi|324996294|gb|EGC28202.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK678]
 gi|325686406|gb|EGD28436.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK72]
 gi|325695809|gb|EGD37706.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK150]
 gi|327463722|gb|EGF10038.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1057]
 gi|327467336|gb|EGF12836.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK330]
 gi|327471741|gb|EGF17182.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK408]
 gi|327490462|gb|EGF22244.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1058]
          Length = 207

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++++AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206


>gi|306832548|ref|ZP_07465688.1| ribosomal protein L4/L1 family protein [Streptococcus bovis ATCC
           700338]
 gi|304425306|gb|EFM28432.1| ribosomal protein L4/L1 family protein [Streptococcus bovis ATCC
           700338]
          Length = 207

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + +++L     KT        AL++ + +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVESLSFTAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|312866536|ref|ZP_07726753.1| 50S ribosomal protein L4 [Streptococcus downei F0415]
 gi|311097967|gb|EFQ56194.1| 50S ribosomal protein L4 [Streptococcus downei F0415]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSTVELNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    +  P+KVR LAL+  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKFPQKVRRLALKSVLSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++ +D L     KT       +AL + + +++   + +    L+ARN+PN+ +   + 
Sbjct: 121 EKLVAVDALSFAAPKTAEFAKVLKALSIDSKVLVVLEEGNEVAALSARNLPNVAVATAKT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIMNADKLLVTKEAISTIEEVL 206


>gi|328945216|gb|EGG39370.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1087]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT   V    AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLSFTAPKTAEFVKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++++AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206


>gi|322391200|ref|ZP_08064672.1| 50S ribosomal protein L4 [Streptococcus peroris ATCC 700780]
 gi|321145953|gb|EFX41342.1| 50S ribosomal protein L4 [Streptococcus peroris ATCC 700780]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIVSQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|222152266|ref|YP_002561441.1| 50S ribosomal protein L4 [Streptococcus uberis 0140J]
 gi|254803757|sp|B9DSV1|RL4_STRU0 RecName: Full=50S ribosomal protein L4
 gi|222113077|emb|CAR40441.1| 50S ribosomal protein L4 [Streptococcus uberis 0140J]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVEGLSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|116251541|ref|YP_767379.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. viciae 3841]
 gi|166199852|sp|Q1MIE0|RL4_RHIL3 RecName: Full=50S ribosomal protein L4
 gi|115256189|emb|CAK07270.1| putative 50S ribosomal protein L4 [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 206

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 126/206 (61%), Positives = 162/206 (78%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ  +K+ G  K+KGR+EV+ TG
Sbjct: 1   MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VIDNLV+ E KTK L + F  L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI
Sbjct: 121 DVIVIDNLVAAEAKTKSLASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206


>gi|254973732|ref|ZP_05270204.1| 50S ribosomal protein L4 [Clostridium difficile QCD-66c26]
 gi|255091121|ref|ZP_05320599.1| 50S ribosomal protein L4 [Clostridium difficile CIP 107932]
 gi|255099233|ref|ZP_05328210.1| 50S ribosomal protein L4 [Clostridium difficile QCD-63q42]
 gi|255305016|ref|ZP_05349188.1| 50S ribosomal protein L4 [Clostridium difficile ATCC 43255]
 gi|255312776|ref|ZP_05354359.1| 50S ribosomal protein L4 [Clostridium difficile QCD-76w55]
 gi|255515535|ref|ZP_05383211.1| 50S ribosomal protein L4 [Clostridium difficile QCD-97b34]
 gi|255648630|ref|ZP_05395532.1| 50S ribosomal protein L4 [Clostridium difficile QCD-37x79]
 gi|306518753|ref|ZP_07405100.1| 50S ribosomal protein L4 [Clostridium difficile QCD-32g58]
 gi|328887509|emb|CAJ66889.2| 50S ribosomal protein L4 [Clostridium difficile]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L+V N+ G++ G I +S+ IF ++    +L  V++ Q   KR G   +K R+EV   
Sbjct: 1   MPKLNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P    + LPKKVR LA++ ALS K  +
Sbjct: 61  GRKPWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D L     KTK        ++ +   ++     + N   +ARNI  +    V  
Sbjct: 121 SEVIVLDALNMDAPKTKEFAQILNNINAAKKALVVIADKNDNVIKSARNIEGVQTALVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+    +++  A++ +E+ +
Sbjct: 181 MNVYDILKYDSFIITTDAVKKVEEVY 206


>gi|160932200|ref|ZP_02079591.1| hypothetical protein CLOLEP_01035 [Clostridium leptum DSM 753]
 gi|156868802|gb|EDO62174.1| hypothetical protein CLOLEP_01035 [Clostridium leptum DSM 753]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V ++ G++ G I +S+ +F ++P   ++  V+      +R G   +  RSEV+  
Sbjct: 1   MPNVAVFDVTGKEVGKIDLSDAVFGIEPNAVVMHEVVVNYLANQRQGTQSALTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG  F P P    + + KKVR LAL+ ALS K   
Sbjct: 61  GKKPWRQKGTGHARQGSTRAPQWTHGGIVFAPKPRSYRYTVNKKVRRLALKSALSSKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++     KTK +     AL      +I    +D+    +A NIP +    V  
Sbjct: 121 ESLVVLDSMTMDAYKTKTVAAMLNALGAEKKALIVLPSVDQKLIKSANNIPGVKTAQVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL   KL++ K A+  +E+ +
Sbjct: 181 INVYDILNADKLIVLKDAVAKIEEVY 206


>gi|163740232|ref|ZP_02147626.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10]
 gi|161386090|gb|EDQ10465.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10]
          Length = 205

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I +  ++F L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKVGDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI+N  S   KT  L  + + L    AL+IDG  +D  F  AARNI  +++LP  G 
Sbjct: 121 ELVVIENADS-AGKTAALAKQVKDLGWKRALVIDGASVDEGFARAARNIEGLDILPTMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205


>gi|158319544|ref|YP_001512051.1| ribosomal protein L4/L1e [Alkaliphilus oremlandii OhILAs]
 gi|166990945|sp|A8MLE1|RL4_ALKOO RecName: Full=50S ribosomal protein L4
 gi|158139743|gb|ABW18055.1| ribosomal protein L4/L1e [Alkaliphilus oremlandii OhILAs]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G+    I +SE++F ++  +  +  V++ Q   +R G   +K R+EV   
Sbjct: 1   MPKVAIYNVSGQQVSEIELSENVFGVEVNEHAMYEVVKNQLANRRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P P    + +PKKVR LAL+ AL+ K  S
Sbjct: 61  GRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L     KTK +V   + L++    +I   +       +A NI  +    V  
Sbjct: 121 NELIVLDELKLDAPKTKEMVNILKNLNVDKKALIVMGEKSEAVIKSANNIQGVQTALVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+  KL+++K A++ +E+ +
Sbjct: 181 INVYDILKYDKLIITKDAVQKVEEVY 206


>gi|239832121|ref|ZP_04680450.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301]
 gi|239824388|gb|EEQ95956.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301]
          Length = 206

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 157/206 (76%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L + E KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLAATEAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|319893199|ref|YP_004150074.1| LSU ribosomal protein L4p (L1e) [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162895|gb|ADV06438.1| LSU ribosomal protein L4p (L1e) [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463753|gb|ADX75906.1| ribosomal protein L4 [Staphylococcus pseudintermedius ED99]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +F ++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVYKVDGSKAGTVELSDSVFGIEPNNDVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYGYKMPKKMRRLALRSALSYKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   ++D+   +  KTK   T    L+L   +++     D N +L+ARNIP + +   +G
Sbjct: 121 NGFKIVDSFNLEAPKTKEFKTTLTNLELPKKVLVVTVGEDVNVELSARNIPGVTITTPEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV ++     +++++ A + +E+  
Sbjct: 181 LNVLELTHADSVLITQEAAKKVEEVL 206


>gi|187776577|ref|ZP_02993050.1| hypothetical protein CLOSPO_00091 [Clostridium sporogenes ATCC
           15579]
 gi|187775236|gb|EDU39038.1| hypothetical protein CLOSPO_00091 [Clostridium sporogenes ATCC
           15579]
          Length = 206

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +GE  G + +++ +F ++     + +V++     KR G   +K R+EV+  
Sbjct: 1   MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK ++ +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++  +  KTK +V    A D +   +I     + N   +ARNI  + ++PV  
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFD-AKKTLIITNNSEENVYKSARNIEGVQIIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  K+V++K A+  +E+ +
Sbjct: 180 INVYDVLKYDKVVITKDAVSKIEEVY 205


>gi|306825985|ref|ZP_07459321.1| ribosomal protein L4/L1 family protein [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304431701|gb|EFM34681.1| ribosomal protein L4/L1 family protein [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P Q ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKQAGEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|168181865|ref|ZP_02616529.1| 50S ribosomal protein L4 [Clostridium botulinum Bf]
 gi|237796941|ref|YP_002864493.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657]
 gi|259491549|sp|C3KVQ0|RL4_CLOB6 RecName: Full=50S ribosomal protein L4
 gi|182674730|gb|EDT86691.1| 50S ribosomal protein L4 [Clostridium botulinum Bf]
 gi|229261648|gb|ACQ52681.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657]
          Length = 206

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +GE  G + +++ +F ++     + +V++     KR G   +K R+EV+  
Sbjct: 1   MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK ++ +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++  +  KTK +V    A + +   +I     + N   +ARNI  + ++PV  
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFN-AKKTLIITNNAEENVYKSARNIEGVQIIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+  K+V++K A+  +E+ +
Sbjct: 180 INVYDILKYDKVVITKDAVSKIEEVY 205


>gi|163745538|ref|ZP_02152898.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45]
 gi|161382356|gb|EDQ06765.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45]
          Length = 205

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 122/206 (59%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG + G + + E +F L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGNAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++ID   S+  KT  L  +   L     L+IDG  ++ NF  AARNI  +++LP  G 
Sbjct: 121 SLVIIDEATSE-GKTAALAKQVSNLGWKRTLVIDGASVNENFAQAARNIEGLDILPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ IEALE R K
Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205


>gi|322386353|ref|ZP_08059983.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100]
 gi|321269577|gb|EFX52507.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100]
          Length = 207

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|84503641|ref|ZP_01001679.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597]
 gi|84387938|gb|EAQ00990.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597]
          Length = 205

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 124/206 (60%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + ++IF L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGSSAGSVDLGDEIFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GPVP    H LPKK R L L+HALS K    
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPVPRSHGHDLPKKFRKLGLKHALSAKVKEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++ID   S+  KT  L  + +AL    ALIIDG  ++  F  AA NI  +++LP  G 
Sbjct: 121 SLVIIDAAESE-GKTNALAKQVKALGWKRALIIDGAAVNEGFAKAAANIDGLDVLPSVGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205


>gi|229829428|ref|ZP_04455497.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM
           14600]
 gi|229791859|gb|EEP27973.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM
           14600]
          Length = 206

 Score =  206 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N++G++   + +++ +F ++    ++   +  Q   KR G  K+K RSEV   
Sbjct: 1   MAKVSVFNMEGKEVEQMELADSVFGVEVNDHLVHMAVLQQLANKRQGTQKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GG   F P P      L +K +  AL  ALS +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGVVVFAPTPRDYSFKLNRKEKRAALLSALSSRVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L   E KTK      + L +  AL++ G   D    ++ARNIP++       
Sbjct: 121 NKLIVVDQLAFDEIKTKKFAEVLKNLKVEKALVVLGQD-DEKAIISARNIPDVKTAQTNS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + LV++K A++++E+ +
Sbjct: 180 INVYDILKYNTLVVTKEAVKSIEEVY 205


>gi|163739438|ref|ZP_02146848.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis BS107]
 gi|161387191|gb|EDQ11550.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis BS107]
          Length = 205

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 123/206 (59%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I +  ++F L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI+N  S   KT  L  + + L    AL+IDG  +D  F  AARNI  +++LP  G 
Sbjct: 121 ELVVIENADS-AGKTAALAKQVKDLGWKRALVIDGASVDEGFARAARNIEGLDILPTMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205


>gi|325288579|ref|YP_004264760.1| LSU ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271]
 gi|324963980|gb|ADY54759.1| LSU ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271]
          Length = 209

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N+ G   G I ++E IF + P  G++  V+  Q    R+G   + GRSEV   
Sbjct: 1   MPKVQVVNMQGSPVGEIELNERIFGVTPNIGVMHSVVVAQMANARVGTHSTLGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     +RGGG  FGP P      +PKKV+ LAL  ALS K   
Sbjct: 61  GRKPWRQKGTGRARAGTIRSPLWRGGGIVFGPKPRDYSKKVPKKVKRLALCSALSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D+L     KTK +V    A+ +    ++     D+N QL+ARNI  +     + 
Sbjct: 121 SNLIVVDDLKFDAPKTKDMVKFLEAIKVDRKALVVTEGSDKNVQLSARNIQGVKTASAES 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D+L+   LV+SK A+   E+ +
Sbjct: 181 INVVDLLKHDVLVISKQAVIKAEEVY 206


>gi|160941068|ref|ZP_02088406.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436017|gb|EDP13784.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC
           BAA-613]
          Length = 206

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +++ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNMEGKEVGALELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F P P      L KK +  ALR AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALRSALTSRVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK        L   +  ++     D+N  L+ARNI  +    V  
Sbjct: 121 NKFIVVDELKFDEIKTKKFQNVMDNLK-VSKALVVLADNDQNTVLSARNIAGVKTSQVGS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V +K+A+ ++E+ +
Sbjct: 180 INVYDILKYNTVVATKAAVASIEEVY 205


>gi|289168731|ref|YP_003447000.1| 50S ribosomal protein L4 [Streptococcus mitis B6]
 gi|288908298|emb|CBJ23140.1| 50S ribosomal protein L4 [Streptococcus mitis B6]
          Length = 207

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIVSQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRNYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|150015044|ref|YP_001307298.1| 50S ribosomal protein L4 [Clostridium beijerinckii NCIMB 8052]
 gi|189029495|sp|A6LPR2|RL4_CLOB8 RecName: Full=50S ribosomal protein L4
 gi|149901509|gb|ABR32342.1| ribosomal protein L4/L1e [Clostridium beijerinckii NCIMB 8052]
          Length = 206

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 116/206 (56%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N +G     + ++E++FA +  +  L +V+      KR G   +K RSEV   
Sbjct: 1   MPTVGVFNKEGNKVADMELNENVFAAEINEYALHQVVVALLANKRQGTQSTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRSPQWIKGGIVFAPKPRDYRVSVPKSMRKVAMKSALTSKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D+L  +  KTK ++   +AL+ +N  +I   + +     +ARNI  I+++P   
Sbjct: 121 NQMIVLDSLNFEAPKTKSMIEMLKALE-ANKALIITAESNEVVYKSARNIQGISVIPANN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  KL+++K A+  +E+ +
Sbjct: 180 INVYDLLKYEKLIITKDAVSKIEEVY 205


>gi|307708061|ref|ZP_07644529.1| ribosomal protein L4/L1 family [Streptococcus mitis NCTC 12261]
 gi|307615846|gb|EFN95051.1| ribosomal protein L4/L1 family [Streptococcus mitis NCTC 12261]
          Length = 207

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKQAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|324990001|gb|EGC21942.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK353]
 gi|325697977|gb|EGD39860.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK160]
          Length = 207

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDTVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++++AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTQAAISKIEEVL 206


>gi|171778376|ref|ZP_02919555.1| hypothetical protein STRINF_00406 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|288904274|ref|YP_003429495.1| ribosomal protein L4 [Streptococcus gallolyticus UCN34]
 gi|325977253|ref|YP_004286969.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|171282907|gb|EDT48331.1| hypothetical protein STRINF_00406 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|288730999|emb|CBI12543.1| ribosomal protein L4 [Streptococcus gallolyticus UCN34]
 gi|325177181|emb|CBZ47225.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 207

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + +++L     KT        AL++ + +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|148381420|ref|YP_001255961.1| ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502]
 gi|153933556|ref|YP_001385795.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397]
 gi|153934780|ref|YP_001389202.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall]
 gi|153940969|ref|YP_001392833.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland]
 gi|168178833|ref|ZP_02613497.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916]
 gi|226950932|ref|YP_002806023.1| ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto]
 gi|166234655|sp|A7FZ68|RL4_CLOB1 RecName: Full=50S ribosomal protein L4
 gi|166234656|sp|A5I7K5|RL4_CLOBH RecName: Full=50S ribosomal protein L4
 gi|166234657|sp|A7GJ73|RL4_CLOBL RecName: Full=50S ribosomal protein L4
 gi|254803725|sp|C1FMV0|RL4_CLOBJ RecName: Full=50S ribosomal protein L4
 gi|148290904|emb|CAL85040.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502]
 gi|152929600|gb|ABS35100.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397]
 gi|152930694|gb|ABS36193.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall]
 gi|152936865|gb|ABS42363.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland]
 gi|182670131|gb|EDT82107.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916]
 gi|226844588|gb|ACO87254.1| ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto]
 gi|295320813|gb|ADG01191.1| 50S ribosomal protein L4 [Clostridium botulinum F str. 230613]
 gi|322807805|emb|CBZ05380.1| LSU ribosomal protein L4p (L1e) [Clostridium botulinum H04402 065]
          Length = 206

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +GE  G + +++ +F ++     + +V++     KR G   +K R+EV+  
Sbjct: 1   MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK ++ +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D +  +  KTK +V    + + +   +I     + N   +ARNI  + ++PV  
Sbjct: 121 NLMVVVDEIKLETPKTKEVVKMLNSFN-AKKTLIITNNAEENVYKSARNIEGVQIIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  K+V++K A+  +E+ +
Sbjct: 180 INVYDVLKYDKVVITKDAVSKIEEVY 205


>gi|307709911|ref|ZP_07646358.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK564]
 gi|307711053|ref|ZP_07647475.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK321]
 gi|322388400|ref|ZP_08062003.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779]
 gi|307617015|gb|EFN96193.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK321]
 gi|307619282|gb|EFN98411.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK564]
 gi|321140713|gb|EFX36215.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779]
          Length = 207

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P Q ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKQAGEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|15896382|ref|NP_349731.1| 50S ribosomal protein L4 [Clostridium acetobutylicum ATCC 824]
 gi|46577285|sp|Q97EH9|RL4_CLOAB RecName: Full=50S ribosomal protein L4
 gi|15026198|gb|AAK81071.1|AE007808_24 Ribosomal protein L4 [Clostridium acetobutylicum ATCC 824]
 gi|325510538|gb|ADZ22174.1| 50S ribosomal protein L4 [Clostridium acetobutylicum EA 2018]
          Length = 206

 Score =  205 bits (522), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N +G+    I +SE +F  K  +  L +V+  Q   KR G   +K R+EV+  
Sbjct: 1   MPTVEVFNKEGKKVEDIELSEKVFGAKISESALHQVVVAQLANKRQGTQSAKTRTEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R  A+  AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRISIPKSMRRTAMLSALTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK +V    A + +   +I   + D+N   + RNI    ++P   
Sbjct: 121 KEMIVLDELKIDAPKTKEIVKMLNAFE-AKKALIVVAESDQNVYKSVRNIQGAAVIPANN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+  K +++K A+  +E+ +
Sbjct: 180 LNVYDILKYDKFIVTKEAVSKIEEVY 205


>gi|255282606|ref|ZP_05347161.1| ribosomal protein L4/L1 family protein [Bryantella formatexigens
           DSM 14469]
 gi|255266899|gb|EET60104.1| ribosomal protein L4/L1 family protein [Bryantella formatexigens
           DSM 14469]
          Length = 206

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 116/206 (56%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +S+ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVSVYNMEGKEVGTMELSDAVFGVEINEHLVHMAVLSQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F PVP      + KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L     KTK +V   + ++ +   ++   + D N  ++ARNI  +       
Sbjct: 121 NKLVVLDELKLDAIKTKSMVNVLKNVN-AEKALVVLNENDENVVMSARNIAGVKTALTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + LV++K+A EA+E+ +
Sbjct: 180 INVYDILKYNTLVMTKAAAEAIEEVY 205


>gi|284049256|ref|YP_003399595.1| ribosomal protein L4/L1e [Acidaminococcus fermentans DSM 20731]
 gi|283953477|gb|ADB48280.1| ribosomal protein L4/L1e [Acidaminococcus fermentans DSM 20731]
          Length = 209

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 105/208 (50%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M +++V ++ G+  G  I + + +F ++  + ++ + +  Q   +R G   +K R  V  
Sbjct: 1   MPKVAVYDITGKQTGEEIELMDYVFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LA+R ALS K  
Sbjct: 61  GGRKPWKQKGTGRARAGSVRSPLWVGGGTVFGPAPRSHAKDMPRKARRLAIRCALSAKVA 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              ++V+DNL     KTK  V      +      +I     + N + ++RNI  +  L  
Sbjct: 121 EGALVVVDNLTFDAPKTKDAVAMLTGFEAADKKALIITDGENENVEKSSRNIEKVKALSN 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYDIL   K++L+K A+  +E+  
Sbjct: 181 DCLNVYDILNAEKVLLAKDAVARIEEVL 208


>gi|331702079|ref|YP_004399038.1| 50S ribosomal protein L4/L1e [Lactobacillus buchneri NRRL B-30929]
 gi|329129422|gb|AEB73975.1| ribosomal protein L4/L1e [Lactobacillus buchneri NRRL B-30929]
          Length = 207

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG   G +++++ IF ++P   ++   +  Q    R G    K RS V   
Sbjct: 1   MTDVALYKQDGSKNGTVALNDGIFGIEPNNNVVFDAIVMQRASLRQGTHSVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKV  LAL+  LS+K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYRLPKKVSRLALKSVLSEKVSD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L     KTK        LD+S   ++     +    L+ARN+ N+ ++  QG
Sbjct: 121 NKLVVVDTLQFDAPKTKEFAELLGKLDVSTKTLVVLEDDNEKAVLSARNLENVKVVSAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN  D+    K+V++K+A+  +E+  
Sbjct: 181 INTLDVADHDKVVITKAALSQVEEVL 206


>gi|227512865|ref|ZP_03942914.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577]
 gi|227522993|ref|ZP_03953042.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290]
 gi|227083865|gb|EEI19177.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577]
 gi|227089811|gb|EEI25123.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290]
          Length = 207

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG   G +S+++DIF ++P   ++   +  Q   +R G    K RS V   
Sbjct: 1   MTDVALYKQDGSQNGTVSLNDDIFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKV  LAL+  LS+K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+LV +  KTK        L++S   +I     +    L+A N+ N+ ++   G
Sbjct: 121 EKLVVVDSLVFETPKTKEFAALLEKLNVSTKTLIVLEDGNEKASLSAHNLENVKVVSADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN  D+    K+V++K+A+  +E+  
Sbjct: 181 INTLDVADHDKVVITKAALSQVEEVL 206


>gi|170759420|ref|YP_001788820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree]
 gi|226730645|sp|B1KSM4|RL4_CLOBM RecName: Full=50S ribosomal protein L4
 gi|169406409|gb|ACA54820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree]
          Length = 206

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +GE  G + +++ +F ++     + +V++     KR G   +K R+EV+  
Sbjct: 1   MAKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK ++ +A++ AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D +  +  KTK +V    A + +   +I     + N   +ARNI  + ++PV  
Sbjct: 121 NLMVVVDEIKLETPKTKEVVKMLNAFN-AKKTLIITNNAEENVYKSARNIEGVQIIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  K++++K A+  +E+ +
Sbjct: 180 INVYDVLKYDKVIITKDAVSKIEEVY 205


>gi|99080088|ref|YP_612242.1| 50S ribosomal protein L4 [Ruegeria sp. TM1040]
 gi|122398432|sp|Q1GK36|RL4_SILST RecName: Full=50S ribosomal protein L4
 gi|99036368|gb|ABF62980.1| LSU ribosomal protein L4P [Ruegeria sp. TM1040]
          Length = 205

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 126/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I +SED+F L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI+N  ++  KT  L  +   L    AL+IDG  ++  F  AA+NI  +++LP  G 
Sbjct: 121 ELVVIENAEAE-GKTAALAKQVANLGWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+KSA+EALE R K
Sbjct: 180 NVYDILKRDTLVLTKSAVEALEARLK 205


>gi|310659501|ref|YP_003937222.1| 50S ribosomal protein L4 [Clostridium sticklandii DSM 519]
 gi|308826279|emb|CBH22317.1| 50S ribosomal subunit protein L4 [Clostridium sticklandii]
          Length = 207

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G+    + +SE IFA +  +  +  V++     +R G   +K R+EV   
Sbjct: 1   MPKVDVLNINGQKVEELELSESIFAAEISEYAVYEVIKNHLANRRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  F P P    +++ KKVR LAL+  L+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSTRSPQWIGGGVVFAPKPRDYSYSVNKKVRRLALKSVLTTKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK  +    A++     ++   +   N   + RNIP +++  V  
Sbjct: 121 GNLIVLDALEMNAPKTKDFIAMLSAVNAGKKALVVTSENSPNVVKSGRNIPGVDITFVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDI+R   L+++K A+   E+ +
Sbjct: 181 LNVYDIMRHDSLIITKEAVRKTEEVY 206


>gi|320548054|ref|ZP_08042334.1| 50S ribosomal protein L4 [Streptococcus equinus ATCC 9812]
 gi|320447296|gb|EFW88059.1| 50S ribosomal protein L4 [Streptococcus equinus ATCC 9812]
          Length = 207

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              + +++L     KT        AL++ + +++   + +    L+ARN+PN+ +     
Sbjct: 121 EKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|163851586|ref|YP_001639629.1| ribosomal protein L4/L1e [Methylobacterium extorquens PA1]
 gi|218530395|ref|YP_002421211.1| 50S ribosomal protein L4 [Methylobacterium chloromethanicum CM4]
 gi|240138754|ref|YP_002963226.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Methylobacterium extorquens AM1]
 gi|254561354|ref|YP_003068449.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Methylobacterium extorquens DM4]
 gi|226730686|sp|A9W4Q2|RL4_METEP RecName: Full=50S ribosomal protein L4
 gi|254803743|sp|B7L0R2|RL4_METC4 RecName: Full=50S ribosomal protein L4
 gi|163663191|gb|ABY30558.1| ribosomal protein L4/L1e [Methylobacterium extorquens PA1]
 gi|218522698|gb|ACK83283.1| ribosomal protein L4/L1e [Methylobacterium chloromethanicum CM4]
 gi|240008723|gb|ACS39949.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Methylobacterium extorquens AM1]
 gi|254268632|emb|CAX24591.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Methylobacterium extorquens DM4]
          Length = 206

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 105/206 (50%), Positives = 145/206 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L +  LDG   G + ++E I+ L+P+  IL R++R+Q  ++R G    K RS+V  T 
Sbjct: 1   MKLDITTLDGGSAGSVELNEAIYGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH + S  QFRGGG+AFGPV     H LPKKVR+LAL+HALS K  ++
Sbjct: 61  KKLYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D++     KTK ++ RF  L LS+ALII G ++D NF  AAR IP I++LPVQGI
Sbjct: 121 TLIVVDDIKVDNHKTKAMIERFEKLGLSSALIIGGSEVDENFGRAARAIPKIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+++A++ALE+RFK
Sbjct: 181 NVYDILRRDTLVLTRAAVDALEERFK 206


>gi|239623348|ref|ZP_04666379.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522314|gb|EEQ62180.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 206

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +++ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F P P      L KK +  AL+ AL+ +  +
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK       +L   N  ++     D+N  L+ARN+ ++    V  
Sbjct: 121 NKFIVVDELKFDEIKTKKFQGVMDSLK-VNKALVVLADNDQNTVLSARNVADVKTAQVDS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V +K+A+ ++E+ +
Sbjct: 180 INVYDILKYNTVVATKAAVASIEEVY 205


>gi|220928208|ref|YP_002505117.1| 50S ribosomal protein L4 [Clostridium cellulolyticum H10]
 gi|254803726|sp|B8I7Y0|RL4_CLOCE RecName: Full=50S ribosomal protein L4
 gi|219998536|gb|ACL75137.1| ribosomal protein L4/L1e [Clostridium cellulolyticum H10]
          Length = 207

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE  G I +S+++F     +  L  V+  Q   +R G   +K +SEV   
Sbjct: 1   MPKVDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANRRQGTQSTKTKSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+  GG   GP P    + LPKKV+ +A++ AL+ K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSAQWVKGGIVLGPKPRSYRYTLPKKVKRIAMKSALTSKVSG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I V+D L     KTK +V     L + ++ ++     + N   +ARNIP I    V  
Sbjct: 121 NEIFVLDALALDAIKTKSMVGVLNNLKVDSSALLVIDSKNENIVKSARNIPGIKTAYVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV+DIL+  K +++K A+E +E+ +
Sbjct: 181 LNVFDILKYDKFIITKDAVEKVEEVY 206


>gi|291542036|emb|CBL15146.1| LSU ribosomal protein L4P [Ruminococcus bromii L2-63]
          Length = 207

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L+V +++G++ G I ++E +F ++P   ++ +++      +R G   +  RSEV+  
Sbjct: 1   MPNLAVVDMEGKNVGTIELAESVFGIEPNAAVMHQMVVNYLAAQRQGTQSALTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++ KKVR LA++ A S K   
Sbjct: 61  GKKPWRQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYRFSVNKKVRRLAMKSAFSSKVME 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D++   E KTK +V    A+      +I   ++D     +A NIP +    V  
Sbjct: 121 NELIVVDSISMDEYKTKKIVAMLSAIGAEKKALIVLPEVDSKVIKSANNIPGVKTAQVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   KL++ K A+  +E+ +
Sbjct: 181 LNVYDILNADKLIIVKDAVSKIEEVY 206


>gi|222529729|ref|YP_002573611.1| 50S ribosomal protein L4 [Caldicellulosiruptor bescii DSM 6725]
 gi|254803711|sp|B9MKI0|RL4_ANATD RecName: Full=50S ribosomal protein L4
 gi|222456576|gb|ACM60838.1| ribosomal protein L4/L1e [Caldicellulosiruptor bescii DSM 6725]
          Length = 208

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G+  G I +++ IF +     +L + +      +R G   +K R+EV   
Sbjct: 1   MAKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  F   P      LPKKV+ LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+D     + KTK ++   + L   +   +I   + +   Q + +NIP +  L V 
Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEKNEYLQKSTKNIPEVKTLQVG 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+DIL+  K V+ + A++ +E+ +
Sbjct: 181 NLNVFDILKYDKFVILQDAVKKVEEVY 207


>gi|227509932|ref|ZP_03939981.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190538|gb|EEI70605.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 207

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG   G +S+++D+F ++P   ++   +  Q   +R G    K RS V   
Sbjct: 1   MTDVALYKQDGSQNGTVSLNDDVFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKV  LAL+  LS+K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+LV +  KTK        L++S   +I     +    L+A N+ N+ ++   G
Sbjct: 121 EKLVVVDSLVFETPKTKEFAALLEKLNVSTKTLIVLEDGNEKASLSAHNLENVKVVSADG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN  D+    K+V++K+A+  +E+  
Sbjct: 181 INTLDVADHDKVVITKAALSQVEEVL 206


>gi|209548936|ref|YP_002280853.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226730713|sp|B5ZYT6|RL4_RHILW RecName: Full=50S ribosomal protein L4
 gi|209534692|gb|ACI54627.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 206

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 125/206 (60%), Positives = 161/206 (78%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V+ L+G+D G +S+S+ IF L+P++ ILARV+RWQ  +K+ G  K+KGR+EV+ TG
Sbjct: 1   MEFNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L LR ALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VIDNLV+ E KTK L + F  L L+NAL I G +LD NF+LAA+NIPNI++LP+QGI
Sbjct: 121 DVIVIDNLVAAEAKTKALASVFETLGLTNALFIGGAELDGNFKLAAQNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDIVRRGKLVLSKAAVEALEERFK 206


>gi|310829584|ref|YP_003961941.1| ribosomal protein L4/L1e [Eubacterium limosum KIST612]
 gi|308741318|gb|ADO38978.1| ribosomal protein L4/L1e [Eubacterium limosum KIST612]
          Length = 206

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + ++ G   G + +SE +F ++P + ++  V+      KR G   +  RSEV   
Sbjct: 1   MPKMDILDVKGNVVGDVELSERVFGIEPNEPVVHEVVVALLANKRQGTKGTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     + GGG  F P        + KKVR+LA+R   S K   
Sbjct: 61  GRKPWRQKGTGRARAGTSRSPLWIGGGVIFAPKSRDYSKKVNKKVRNLAMRSVFSAKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++ V+D L     KTK +V    A++ +   +I   + D     +A NI  +    V  
Sbjct: 121 NELRVLDQLTMDAPKTKEMVGILSAIN-APKALIVTAEKDDAVVRSANNIQKVATTTVSE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L+   LV++K A+E +E+ +
Sbjct: 180 LNVYDMLKYDVLVMTKDALEKIEEVY 205


>gi|256159967|ref|ZP_05457685.1| 50S ribosomal protein L4 [Brucella ceti M490/95/1]
 gi|256255198|ref|ZP_05460734.1| 50S ribosomal protein L4 [Brucella ceti B1/94]
 gi|261222394|ref|ZP_05936675.1| ribosomal protein L4 [Brucella ceti B1/94]
 gi|265998359|ref|ZP_06110916.1| ribosomal protein L4 [Brucella ceti M490/95/1]
 gi|82798206|gb|ABB91855.1| ribosomal protein L4 [Brucella ceti]
 gi|260920978|gb|EEX87631.1| ribosomal protein L4 [Brucella ceti B1/94]
 gi|262552827|gb|EEZ08817.1| ribosomal protein L4 [Brucella ceti M490/95/1]
          Length = 206

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 156/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGTGRARH S    QFRGGG+A GPV     H LPKKV +L LRHALS K  ++
Sbjct: 61  SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|154505168|ref|ZP_02041906.1| hypothetical protein RUMGNA_02681 [Ruminococcus gnavus ATCC 29149]
 gi|153794647|gb|EDN77067.1| hypothetical protein RUMGNA_02681 [Ruminococcus gnavus ATCC 29149]
          Length = 206

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +S+ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVGTIDLSDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK +  AL+ ALS +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSMKLNKKEKRAALKSALSSRVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +VID +   E KTK       +    N  ++     + N +L+ARNI ++       
Sbjct: 121 NKFIVIDEMNFGEIKTKNFQNMLNS-LNVNKALVVLEDGNVNAELSARNIADVKTARTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+DIL+ + ++ +K+A+  +E+ +
Sbjct: 180 INVFDILKYNTVIATKAAVANIEEVY 205


>gi|312622046|ref|YP_004023659.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202513|gb|ADQ45840.1| ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis 2002]
          Length = 208

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G+  G I +++ IF +     +L + +      +R G   +K R+EV   
Sbjct: 1   MAKVPVYNIEGQQIGEIELNDSIFNVPINNHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  F   P      LPKKV+ LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIELPKKVKRLALKCALSSKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+D     + KTK ++   + L   +   +I   + +   Q + +NIP +  L V 
Sbjct: 121 NNLIVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEKNEYLQKSTKNIPEVKTLQVG 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+DIL+  K V+ + A++ +E+ +
Sbjct: 181 NLNVFDILKYDKFVILQDAVKKVEEVY 207


>gi|149915845|ref|ZP_01904369.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b]
 gi|149810168|gb|EDM70014.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b]
          Length = 205

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + EDIF L P+  IL RV+RWQ  + + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGSVDLGEDIFGLDPRADILHRVVRWQRNKAQQGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H LPKKVR L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V+D   S   KT  L  + + L     LIIDG +++ +F  AA NI  +++LP  G 
Sbjct: 121 ELVVLDAATSD-GKTGALAKQIKDLGWKRVLIIDGAEVNADFARAAANIEGVDVLPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205


>gi|23502109|ref|NP_698236.1| 50S ribosomal protein L4 [Brucella suis 1330]
 gi|62290143|ref|YP_221936.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941]
 gi|82700066|ref|YP_414640.1| 50S ribosomal protein L4 [Brucella melitensis biovar Abortus 2308]
 gi|148559402|ref|YP_001259152.1| 50S ribosomal protein L4 [Brucella ovis ATCC 25840]
 gi|161619188|ref|YP_001593075.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365]
 gi|163843498|ref|YP_001627902.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445]
 gi|189024381|ref|YP_001935149.1| Ribosomal protein L4/L1e [Brucella abortus S19]
 gi|225627702|ref|ZP_03785739.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo]
 gi|225852729|ref|YP_002732962.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457]
 gi|237815651|ref|ZP_04594648.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A]
 gi|254689452|ref|ZP_05152706.1| 50S ribosomal protein L4 [Brucella abortus bv. 6 str. 870]
 gi|254693937|ref|ZP_05155765.1| 50S ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya]
 gi|254697587|ref|ZP_05159415.1| 50S ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701973|ref|ZP_05163801.1| 50S ribosomal protein L4 [Brucella suis bv. 5 str. 513]
 gi|254704517|ref|ZP_05166345.1| 50S ribosomal protein L4 [Brucella suis bv. 3 str. 686]
 gi|254706587|ref|ZP_05168415.1| 50S ribosomal protein L4 [Brucella pinnipedialis M163/99/10]
 gi|254710303|ref|ZP_05172114.1| 50S ribosomal protein L4 [Brucella pinnipedialis B2/94]
 gi|254714300|ref|ZP_05176111.1| 50S ribosomal protein L4 [Brucella ceti M644/93/1]
 gi|254717737|ref|ZP_05179548.1| 50S ribosomal protein L4 [Brucella ceti M13/05/1]
 gi|254730481|ref|ZP_05189059.1| 50S ribosomal protein L4 [Brucella abortus bv. 4 str. 292]
 gi|256031797|ref|ZP_05445411.1| 50S ribosomal protein L4 [Brucella pinnipedialis M292/94/1]
 gi|256044882|ref|ZP_05447786.1| 50S ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1]
 gi|256061312|ref|ZP_05451462.1| 50S ribosomal protein L4 [Brucella neotomae 5K33]
 gi|256113786|ref|ZP_05454590.1| 50S ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether]
 gi|256257698|ref|ZP_05463234.1| 50S ribosomal protein L4 [Brucella abortus bv. 9 str. C68]
 gi|256263781|ref|ZP_05466313.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9]
 gi|260168931|ref|ZP_05755742.1| 50S ribosomal protein L4 [Brucella sp. F5/99]
 gi|260546691|ref|ZP_05822430.1| ribosomal protein L4 [Brucella abortus NCTC 8038]
 gi|260565516|ref|ZP_05836000.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M]
 gi|260566239|ref|ZP_05836709.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40]
 gi|260754975|ref|ZP_05867323.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870]
 gi|260758191|ref|ZP_05870539.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292]
 gi|260762017|ref|ZP_05874360.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883984|ref|ZP_05895598.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68]
 gi|261214229|ref|ZP_05928510.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya]
 gi|261219580|ref|ZP_05933861.1| ribosomal protein L4 [Brucella ceti M13/05/1]
 gi|261314047|ref|ZP_05953244.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10]
 gi|261317866|ref|ZP_05957063.1| ribosomal protein L4 [Brucella pinnipedialis B2/94]
 gi|261322075|ref|ZP_05961272.1| ribosomal protein L4 [Brucella ceti M644/93/1]
 gi|261325319|ref|ZP_05964516.1| ribosomal protein L4 [Brucella neotomae 5K33]
 gi|261752541|ref|ZP_05996250.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513]
 gi|261755200|ref|ZP_05998909.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
 gi|261758424|ref|ZP_06002133.1| ribosomal protein L4 [Brucella sp. F5/99]
 gi|265988895|ref|ZP_06101452.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1]
 gi|265991309|ref|ZP_06103866.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995146|ref|ZP_06107703.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether]
 gi|297248538|ref|ZP_06932256.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196]
 gi|306840302|ref|ZP_07473074.1| 50S ribosomal protein L4 [Brucella sp. BO2]
 gi|306844136|ref|ZP_07476730.1| 50S ribosomal protein L4 [Brucella sp. BO1]
 gi|46577272|sp|Q8G077|RL4_BRUSU RecName: Full=50S ribosomal protein L4
 gi|51338733|sp|Q8YHN9|RL4_BRUME RecName: Full=50S ribosomal protein L4
 gi|75496682|sp|Q57CQ9|RL4_BRUAB RecName: Full=50S ribosomal protein L4
 gi|109893579|sp|Q2YM04|RL4_BRUA2 RecName: Full=50S ribosomal protein L4
 gi|166234640|sp|A5VR05|RL4_BRUO2 RecName: Full=50S ribosomal protein L4
 gi|189029492|sp|A9M5P9|RL4_BRUC2 RecName: Full=50S ribosomal protein L4
 gi|189029493|sp|B0CH31|RL4_BRUSI RecName: Full=50S ribosomal protein L4
 gi|226730626|sp|B2S678|RL4_BRUA1 RecName: Full=50S ribosomal protein L4
 gi|254803720|sp|C0RJK0|RL4_BRUMB RecName: Full=50S ribosomal protein L4
 gi|23348069|gb|AAN30151.1| ribosomal protein L4 [Brucella suis 1330]
 gi|62196275|gb|AAX74575.1| RplD, ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941]
 gi|82616167|emb|CAJ11210.1| Ribosomal protein L4/L1e [Brucella melitensis biovar Abortus 2308]
 gi|82798166|gb|ABB91835.1| ribosomal protein L4 [Brucella abortus]
 gi|82798168|gb|ABB91836.1| ribosomal protein L4 [Brucella abortus]
 gi|82798170|gb|ABB91837.1| ribosomal protein L4 [Brucella abortus]
 gi|82798172|gb|ABB91838.1| ribosomal protein L4 [Brucella abortus]
 gi|82798174|gb|ABB91839.1| ribosomal protein L4 [Brucella abortus]
 gi|82798176|gb|ABB91840.1| ribosomal protein L4 [Brucella abortus]
 gi|82798178|gb|ABB91841.1| ribosomal protein L4 [Brucella abortus]
 gi|82798180|gb|ABB91842.1| ribosomal protein L4 [Brucella canis]
 gi|82798182|gb|ABB91843.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
 gi|82798184|gb|ABB91844.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
 gi|82798186|gb|ABB91845.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
 gi|82798188|gb|ABB91846.1| ribosomal protein L4 [Brucella neotomae 5K33]
 gi|82798190|gb|ABB91847.1| ribosomal protein L4 [Brucella ovis]
 gi|82798192|gb|ABB91848.1| ribosomal protein L4 [Brucella suis 1330]
 gi|82798194|gb|ABB91849.1| ribosomal protein L4 [Brucella suis ATCC 23445]
 gi|82798196|gb|ABB91850.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
 gi|82798198|gb|ABB91851.1| ribosomal protein L4 [Brucella suis bv. 4 str. 40]
 gi|82798200|gb|ABB91852.1| ribosomal protein L4 [Brucella suis]
 gi|82798202|gb|ABB91853.1| ribosomal protein L4 [Brucella pinnipedialis]
 gi|82798204|gb|ABB91854.1| ribosomal protein L4 [Brucella ceti]
 gi|148370659|gb|ABQ60638.1| ribosomal protein L4 [Brucella ovis ATCC 25840]
 gi|161335999|gb|ABX62304.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365]
 gi|163674221|gb|ABY38332.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445]
 gi|189019953|gb|ACD72675.1| Ribosomal protein L4/L1e [Brucella abortus S19]
 gi|225617707|gb|EEH14752.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo]
 gi|225641094|gb|ACO01008.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457]
 gi|237788949|gb|EEP63160.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A]
 gi|260095741|gb|EEW79618.1| ribosomal protein L4 [Brucella abortus NCTC 8038]
 gi|260151584|gb|EEW86678.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M]
 gi|260155757|gb|EEW90837.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40]
 gi|260668509|gb|EEX55449.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292]
 gi|260672449|gb|EEX59270.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675083|gb|EEX61904.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870]
 gi|260873512|gb|EEX80581.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68]
 gi|260915836|gb|EEX82697.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya]
 gi|260924669|gb|EEX91237.1| ribosomal protein L4 [Brucella ceti M13/05/1]
 gi|261294765|gb|EEX98261.1| ribosomal protein L4 [Brucella ceti M644/93/1]
 gi|261297089|gb|EEY00586.1| ribosomal protein L4 [Brucella pinnipedialis B2/94]
 gi|261301299|gb|EEY04796.1| ribosomal protein L4 [Brucella neotomae 5K33]
 gi|261303073|gb|EEY06570.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10]
 gi|261738408|gb|EEY26404.1| ribosomal protein L4 [Brucella sp. F5/99]
 gi|261742294|gb|EEY30220.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513]
 gi|261744953|gb|EEY32879.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
 gi|262766259|gb|EEZ12048.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether]
 gi|263002093|gb|EEZ14668.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093909|gb|EEZ17843.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9]
 gi|264661092|gb|EEZ31353.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1]
 gi|297175707|gb|EFH35054.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196]
 gi|306275579|gb|EFM57311.1| 50S ribosomal protein L4 [Brucella sp. BO1]
 gi|306289701|gb|EFM60890.1| 50S ribosomal protein L4 [Brucella sp. BO2]
 gi|326409254|gb|ADZ66319.1| Ribosomal protein L4/L1e [Brucella melitensis M28]
 gi|326538962|gb|ADZ87177.1| 50S ribosomal protein L4 [Brucella melitensis M5-90]
          Length = 206

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 120/206 (58%), Positives = 157/206 (76%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGTGRARH S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|222150446|ref|YP_002559599.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402]
 gi|254803742|sp|B9E9J2|RL4_MACCJ RecName: Full=50S ribosomal protein L4
 gi|222119568|dbj|BAH16903.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402]
          Length = 207

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G I +++++F ++P Q +L   +  Q    R G    K RS V+  
Sbjct: 1   MANYDVLKVDGTKAGSIELNDNVFGIEPNQHVLFEAINLQRASMRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWKQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSAKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   V+++L     KTK        L+L   ++      D N  L+ARNIP + ++   G
Sbjct: 121 NAFTVLESLTFDAPKTKEFKNMTTTLELPKKVLFVVEAEDVNVALSARNIPGVTVITTTG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI+  +++V++K A+E +E+  
Sbjct: 181 LNVLDIVHANQVVMTKGAVEKVEEVL 206


>gi|302669962|ref|YP_003829922.1| ribosomal protein L4 RplD [Butyrivibrio proteoclasticus B316]
 gi|302394435|gb|ADL33340.1| ribosomal protein L4 RplD [Butyrivibrio proteoclasticus B316]
          Length = 207

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +S+ IF ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVSVYNMEGKEVGKIDLSDAIFGVEVNEHLVHMAVLQQLADNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F PVP      + KK +  AL+ AL+DK  +
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTDKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L   E KTK        L+ +   ++     D+N  L+ARN+   N      
Sbjct: 121 NNIVVVDELKFDEIKTKRFAEVMNNLNATRKALVVLADNDQNVVLSARNLAEANTTLTNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDI+    LVL+K A+  +E+ +
Sbjct: 181 LNVYDIVNARTLVLTKDAVAKIEEVY 206


>gi|256544507|ref|ZP_05471880.1| 50S ribosomal protein L4 [Anaerococcus vaginalis ATCC 51170]
 gi|256399832|gb|EEU13436.1| 50S ribosomal protein L4 [Anaerococcus vaginalis ATCC 51170]
          Length = 207

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N+ GE+ G I ++E +FA +  +  +   ++ Q   KR G   +K R+EV   
Sbjct: 1   MPKVEVLNIKGENVGEIELNETLFAAEIAETAVYDTVKNQLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P P    + +PKK+R  AL   L+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPKKMRRKALYSVLTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L     KTK        ++ +    +   + D     + RNI   N+     
Sbjct: 121 NELIVLDELKLDSYKTKEANEILNNINANKKAYVVIAENDDKVYRSFRNIEGCNVEKANL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+LR  KLV++K AI  LE+ F
Sbjct: 181 INVYDLLRHDKLVITKDAINKLEEVF 206


>gi|146317732|ref|YP_001197444.1| 50S ribosomal protein L4 [Streptococcus suis 05ZYH33]
 gi|146319922|ref|YP_001199633.1| 50S ribosomal protein L4 [Streptococcus suis 98HAH33]
 gi|253750988|ref|YP_003024129.1| 50S ribosomal protein L4 [Streptococcus suis SC84]
 gi|253752888|ref|YP_003026028.1| 50S ribosomal protein L4 [Streptococcus suis P1/7]
 gi|253754713|ref|YP_003027853.1| 50S ribosomal protein L4 [Streptococcus suis BM407]
 gi|330831921|ref|YP_004400746.1| 50S ribosomal protein L4 [Streptococcus suis ST3]
 gi|166199915|sp|A4VYP4|RL4_STRS2 RecName: Full=50S ribosomal protein L4
 gi|166199917|sp|A4VSF5|RL4_STRSY RecName: Full=50S ribosomal protein L4
 gi|145688538|gb|ABP89044.1| Ribosomal protein L4 [Streptococcus suis 05ZYH33]
 gi|145690728|gb|ABP91233.1| Ribosomal protein L4 [Streptococcus suis 98HAH33]
 gi|251815277|emb|CAZ50843.1| 50S ribosomal protein L4 [Streptococcus suis SC84]
 gi|251817177|emb|CAZ54899.1| 50S ribosomal protein L4 [Streptococcus suis BM407]
 gi|251819133|emb|CAR44224.1| 50S ribosomal protein L4 [Streptococcus suis P1/7]
 gi|292557532|gb|ADE30533.1| ribosomal protein L4 [Streptococcus suis GZ1]
 gi|329306144|gb|AEB80560.1| 50S ribosomal protein L4 [Streptococcus suis ST3]
          Length = 207

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P Q ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +++L     KT        AL + + +++   + +    L+ARNIP + +     
Sbjct: 121 NKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNIPGVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANADKLLVTQAAISKIEEVL 206


>gi|110180290|gb|ABG54388.1| 23S ribosomal protein L4 [Brucella pinnipedialis]
          Length = 206

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 156/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGTGRA H S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  SKMYKQKGTGRASHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|15900146|ref|NP_344750.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TIGR4]
 gi|15902233|ref|NP_357783.1| 50S ribosomal protein L4 [Streptococcus pneumoniae R6]
 gi|111658800|ref|ZP_01409431.1| hypothetical protein SpneT_02000097 [Streptococcus pneumoniae
           TIGR4]
 gi|116515366|ref|YP_815713.1| 50S ribosomal protein L4 [Streptococcus pneumoniae D39]
 gi|148987946|ref|ZP_01819409.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP6-BS73]
 gi|148992786|ref|ZP_01822429.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP9-BS68]
 gi|148996631|ref|ZP_01824349.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP11-BS70]
 gi|149001685|ref|ZP_01826658.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS69]
 gi|149005959|ref|ZP_01829688.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP18-BS74]
 gi|149011078|ref|ZP_01832383.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP19-BS75]
 gi|149017898|ref|ZP_01834357.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP23-BS72]
 gi|168483846|ref|ZP_02708798.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae
           CDC1873-00]
 gi|168489687|ref|ZP_02713886.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae SP195]
 gi|168492163|ref|ZP_02716306.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae
           CDC0288-04]
 gi|168493903|ref|ZP_02718046.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae
           CDC3059-06]
 gi|168576363|ref|ZP_02722246.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae MLV-016]
 gi|169833141|ref|YP_001693742.1| 50S ribosomal protein L4 [Streptococcus pneumoniae Hungary19A-6]
 gi|182683189|ref|YP_001834936.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CGSP14]
 gi|225853816|ref|YP_002735328.1| 50S ribosomal protein L4 [Streptococcus pneumoniae JJA]
 gi|225855975|ref|YP_002737486.1| 50S ribosomal protein L4 [Streptococcus pneumoniae P1031]
 gi|225858064|ref|YP_002739574.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 70585]
 gi|225860252|ref|YP_002741761.1| 50S ribosomal protein L4 [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649722|ref|ZP_04523974.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CCRI 1974]
 gi|298230367|ref|ZP_06964048.1| 50S ribosomal protein L4 [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255988|ref|ZP_06979574.1| 50S ribosomal protein L4 [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502024|ref|YP_003723964.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TCH8431/19A]
 gi|303255094|ref|ZP_07341170.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS455]
 gi|303259262|ref|ZP_07345240.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP-BS293]
 gi|303261017|ref|ZP_07346966.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS292]
 gi|303263345|ref|ZP_07349268.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS397]
 gi|303265510|ref|ZP_07351410.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS457]
 gi|303267932|ref|ZP_07353734.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS458]
 gi|307066887|ref|YP_003875853.1| hypothetical protein SPAP_0258 [Streptococcus pneumoniae AP200]
 gi|307126430|ref|YP_003878461.1| 50S ribosomal protein L4/L1 family [Streptococcus pneumoniae
           670-6B]
 gi|46396654|sp|Q97SV4|RL4_STRPN RecName: Full=50S ribosomal protein L4
 gi|46577255|sp|Q8CWV7|RL4_STRR6 RecName: Full=50S ribosomal protein L4
 gi|122279401|sp|Q04MN5|RL4_STRP2 RecName: Full=50S ribosomal protein L4
 gi|226730731|sp|B1I8J9|RL4_STRPI RecName: Full=50S ribosomal protein L4
 gi|226730739|sp|B2IS41|RL4_STRPS RecName: Full=50S ribosomal protein L4
 gi|254803755|sp|C1CAL3|RL4_STRP7 RecName: Full=50S ribosomal protein L4
 gi|254803758|sp|C1CC07|RL4_STRZJ RecName: Full=50S ribosomal protein L4
 gi|254803759|sp|C1CI98|RL4_STRZP RecName: Full=50S ribosomal protein L4
 gi|254803760|sp|C1CP89|RL4_STRZT RecName: Full=50S ribosomal protein L4
 gi|14971678|gb|AAK74390.1| ribosomal protein L4 [Streptococcus pneumoniae TIGR4]
 gi|15457733|gb|AAK98993.1| 50S Ribosomal protein L4 [Streptococcus pneumoniae R6]
 gi|116075942|gb|ABJ53662.1| ribosomal protein L4 [Streptococcus pneumoniae D39]
 gi|147757206|gb|EDK64245.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP11-BS70]
 gi|147760143|gb|EDK67132.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS69]
 gi|147762315|gb|EDK69276.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP18-BS74]
 gi|147764714|gb|EDK71644.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP19-BS75]
 gi|147926410|gb|EDK77483.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP6-BS73]
 gi|147928512|gb|EDK79527.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP9-BS68]
 gi|147931462|gb|EDK82440.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP23-BS72]
 gi|168995643|gb|ACA36255.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042817|gb|EDT50863.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae
           CDC1873-00]
 gi|182628523|gb|ACB89471.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CGSP14]
 gi|183571793|gb|EDT92321.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae SP195]
 gi|183573611|gb|EDT94139.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae
           CDC0288-04]
 gi|183576018|gb|EDT96546.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae
           CDC3059-06]
 gi|183577871|gb|EDT98399.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae MLV-016]
 gi|225720617|gb|ACO16471.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae 70585]
 gi|225723287|gb|ACO19140.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae JJA]
 gi|225725631|gb|ACO21483.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae P1031]
 gi|225728067|gb|ACO23918.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237619|gb|ADI68750.1| 50S ribosomal protein L4 [Streptococcus pneumoniae TCH8431/19A]
 gi|301793483|emb|CBW35856.1| 50S ribosomal protein L4 [Streptococcus pneumoniae INV104]
 gi|301801154|emb|CBW33827.1| 50S ribosomal protein L4 [Streptococcus pneumoniae INV200]
 gi|302597924|gb|EFL64994.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS455]
 gi|302637854|gb|EFL68340.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP14-BS292]
 gi|302639680|gb|EFL70137.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP-BS293]
 gi|302642628|gb|EFL72973.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS458]
 gi|302644950|gb|EFL75197.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS457]
 gi|302647118|gb|EFL77342.1| 50S ribosomal protein L4 [Streptococcus pneumoniae BS397]
 gi|306408424|gb|ADM83851.1| hypothetical protein SPAP_0258 [Streptococcus pneumoniae AP200]
 gi|306483492|gb|ADM90361.1| ribosomal protein L4/L1 family [Streptococcus pneumoniae 670-6B]
 gi|327390629|gb|EGE88969.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA04375]
 gi|332075875|gb|EGI86342.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA17570]
 gi|332076656|gb|EGI87118.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA17545]
 gi|332077511|gb|EGI87972.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA41301]
          Length = 207

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G++ G + +S+ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKEAGQVVLSDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|261264937|gb|ACX55827.1| 50S ribosomal protein L4 [Staphylococcus epidermidis]
          Length = 208

 Score =  204 bits (520), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +++ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTG-RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKGTG RAR  +    Q+RGGG  FGP P    + +PKK+R  ALR ALS K  
Sbjct: 61  GRKPWRQKGTGGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRSALRSALSFKVQ 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            N   ++D    +  KTK        L+    +++     D N +L+ARNIP + +   Q
Sbjct: 121 ENSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTESEDVNVELSARNIPGVQVTTAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+NV D+     ++++++A + +E+  
Sbjct: 181 GLNVLDLTSADSVIITEAAAKKVEEVL 207


>gi|254719290|ref|ZP_05181101.1| 50S ribosomal protein L4 [Brucella sp. 83/13]
 gi|265984290|ref|ZP_06097025.1| ribosomal protein L4 [Brucella sp. 83/13]
 gi|306838042|ref|ZP_07470900.1| 50S ribosomal protein L4 [Brucella sp. NF 2653]
 gi|264662882|gb|EEZ33143.1| ribosomal protein L4 [Brucella sp. 83/13]
 gi|306406966|gb|EFM63187.1| 50S ribosomal protein L4 [Brucella sp. NF 2653]
          Length = 206

 Score =  204 bits (520), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 156/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ   ++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLAHRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGTGRARH S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|270291132|ref|ZP_06197355.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4]
 gi|304385413|ref|ZP_07367758.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici
           DSM 20284]
 gi|270280528|gb|EFA26363.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4]
 gi|304328620|gb|EFL95841.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici
           DSM 20284]
          Length = 207

 Score =  204 bits (520), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +S+   DG   G + ++ DIF ++P   ++   +  Q    R G    K RS V   
Sbjct: 1   MANVSLFKQDGTQNGTVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    +++PKK+R LAL+  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D    +  KTK        L++    ++   + + +  LAARN+ N+ ++   G
Sbjct: 121 ESLVVVDEFKFETPKTKDFAQSLSKLNVEKKALLVLEEDNESAVLAARNLSNVKIVEPTG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV DI+   KLV+++ A+  +E+  
Sbjct: 181 INVLDIMNSDKLVITQKALSQVEEAL 206


>gi|293364346|ref|ZP_06611072.1| 50S ribosomal protein L4 [Streptococcus oralis ATCC 35037]
 gi|307702687|ref|ZP_07639639.1| 50S ribosomal protein L4 (BL4) [Streptococcus oralis ATCC 35037]
 gi|307704066|ref|ZP_07640995.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK597]
 gi|291317192|gb|EFE57619.1| 50S ribosomal protein L4 [Streptococcus oralis ATCC 35037]
 gi|307622356|gb|EFO01364.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK597]
 gi|307623803|gb|EFO02788.1| 50S ribosomal protein L4 (BL4) [Streptococcus oralis ATCC 35037]
          Length = 207

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G++ G + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKEAGQVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|126739690|ref|ZP_01755382.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6]
 gi|126719336|gb|EBA16046.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6]
          Length = 205

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 127/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I +SED+F L+P+  IL R++RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRLVRWQRNNAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI++  S+  KT  L  + + L    AL+IDG  ++ +F  A+RNI  +++LP  G 
Sbjct: 121 ELVVIEDAASE-GKTAALAKQVKDLGWKRALVIDGASVNEDFLKASRNIEGLDILPTMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205


>gi|110180276|gb|ABG54381.1| 23S ribosomal protein L4 [Brucella ceti]
 gi|110180280|gb|ABG54383.1| 23S ribosomal protein L4 [Brucella ceti]
          Length = 206

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 156/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGTGRA H S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  SKMYKQKGTGRACHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|329117498|ref|ZP_08246215.1| 50S ribosomal protein L4 [Streptococcus parauberis NCFD 2020]
 gi|326907903|gb|EGE54817.1| 50S ribosomal protein L4 [Streptococcus parauberis NCFD 2020]
          Length = 207

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + ++E IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              + +++L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 EKFVAVESLSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|225571553|ref|ZP_03780549.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM
           15053]
 gi|225159630|gb|EEG72249.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM
           15053]
          Length = 206

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +++ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK +  AL+ AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTTKVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              +V+D +   E KTK      + LD  +  ++     + N +L+ARNI ++       
Sbjct: 121 KKFIVVDEIAFDEIKTKNFANVLKNLD-VSKALVVLEDGNTNAELSARNIADVKTAKTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+A+  +E+ +
Sbjct: 180 INVYDILKYNTVIATKAAVANIEEVY 205


>gi|261264933|gb|ACX55825.1| 50S ribosomal protein L4 [Staphylococcus epidermidis]
          Length = 208

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +++ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTG-RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKGTG RAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K  
Sbjct: 61  GRKPWRQKGTGGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQ 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            N   ++D    +  KTK        L+    +++     D N +L+ARNIP + +   Q
Sbjct: 121 ENSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+NV D+     ++++++A + +E+  
Sbjct: 181 GLNVLDLTSADSVIITEAAAKKVEEVL 207


>gi|239636232|ref|ZP_04677236.1| ribosomal protein L4/L1 family protein [Staphylococcus warneri
           L37603]
 gi|239598248|gb|EEQ80741.1| ribosomal protein L4/L1 family protein [Staphylococcus warneri
           L37603]
 gi|330685172|gb|EGG96836.1| 50S ribosomal protein L4 [Staphylococcus epidermidis VCU121]
          Length = 207

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V  +DG   G + +S+ +FA++P   +L   +  Q    R G    K RS V   
Sbjct: 1   MANYDVLKVDGSKSGSVELSDAVFAIEPNNSVLFEAINLQRASLRQGTHSVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+RGGG  FGP P    + +PKK+R LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYGYKMPKKMRRLALRSALSFKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N   V+D       KTK        L+    +++     D N +L+ARNIP + +   QG
Sbjct: 121 NGFTVVDAFGFDAPKTKEFKNVLTTLEQPKKVLVVVENEDVNVELSARNIPGVQVTTAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI     +V++++A + +E+  
Sbjct: 181 LNVLDITSADSVVITEAAAKKVEEVL 206


>gi|148983608|ref|ZP_01816927.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP3-BS71]
 gi|194397434|ref|YP_002036911.1| 50S ribosomal protein L4 [Streptococcus pneumoniae G54]
 gi|221231114|ref|YP_002510266.1| 50S ribosomal protein L4 [Streptococcus pneumoniae ATCC 700669]
 gi|270292001|ref|ZP_06198216.1| ribosomal protein L4 [Streptococcus sp. M143]
 gi|306828784|ref|ZP_07461976.1| ribosomal protein L4/L1 family protein [Streptococcus mitis ATCC
           6249]
 gi|315612333|ref|ZP_07887246.1| ribosomal protein L4/L1 family protein [Streptococcus sanguinis
           ATCC 49296]
 gi|322375038|ref|ZP_08049552.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C300]
 gi|322377229|ref|ZP_08051721.1| ribosomal protein L4/L1 family protein [Streptococcus sp. M334]
 gi|331267135|ref|YP_004326765.1| 50S ribosomal protein L4 [Streptococcus oralis Uo5]
 gi|226730730|sp|B5E6F6|RL4_STRP4 RecName: Full=50S ribosomal protein L4
 gi|254803756|sp|B8ZKF8|RL4_STRPJ RecName: Full=50S ribosomal protein L4
 gi|74267363|dbj|BAE44179.1| ribosomal protein L4 [Streptococcus pneumoniae]
 gi|147923755|gb|EDK74867.1| 50S ribosomal protein L4 [Streptococcus pneumoniae SP3-BS71]
 gi|194357101|gb|ACF55549.1| 50S ribosomal protein L4 [Streptococcus pneumoniae G54]
 gi|220673574|emb|CAR68060.1| 50S ribosomal protein L4 [Streptococcus pneumoniae ATCC 700669]
 gi|270279529|gb|EFA25371.1| ribosomal protein L4 [Streptococcus sp. M143]
 gi|301799359|emb|CBW31894.1| 50S ribosomal protein L4 [Streptococcus pneumoniae OXC141]
 gi|304428962|gb|EFM32050.1| ribosomal protein L4/L1 family protein [Streptococcus mitis ATCC
           6249]
 gi|315315314|gb|EFU63353.1| ribosomal protein L4/L1 family protein [Streptococcus sanguinis
           ATCC 49296]
 gi|321280538|gb|EFX57577.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C300]
 gi|321281942|gb|EFX58950.1| ribosomal protein L4/L1 family protein [Streptococcus sp. M334]
 gi|326683807|emb|CBZ01425.1| 50S ribosomal protein L4 [Streptococcus oralis Uo5]
          Length = 207

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G++ G + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKEAGQVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|153009287|ref|YP_001370502.1| 50S ribosomal protein L4 [Ochrobactrum anthropi ATCC 49188]
 gi|166234695|sp|A6X0B9|RL4_OCHA4 RecName: Full=50S ribosomal protein L4
 gi|151561175|gb|ABS14673.1| ribosomal protein L4/L1e [Ochrobactrum anthropi ATCC 49188]
          Length = 206

 Score =  204 bits (519), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 157/206 (76%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L + E KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLAATEAKTKQLVSQFAKLGLENALVIGGAEIDVNFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|291521897|emb|CBK80190.1| LSU ribosomal protein L4P [Coprococcus catus GD/7]
          Length = 206

 Score =  204 bits (518), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LSV N++G   G I +++ +F ++  + ++ + +  Q    R G   +K RSEV+  
Sbjct: 1   MAKLSVYNIEGNQVGEIELNDAVFGVEVNENLMHKAVVAQLAASRQGTQSAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK R LA++ AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSIKLNKKERRLAIKSALTTKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++V+D+    E KTK  V     L  +   ++   + + N   +A N+P +       
Sbjct: 121 SKLIVLDSFELDEIKTKKFVAVMNNLK-AEKALVVLNEKNDNVIKSANNVPTVKTALTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+   LVL++ A+  +++ +
Sbjct: 180 INVYDILKYDTLVLTQDAVATIQEVY 205


>gi|292669859|ref|ZP_06603285.1| 50S ribosomal protein L4 [Selenomonas noxia ATCC 43541]
 gi|292648656|gb|EFF66628.1| 50S ribosomal protein L4 [Selenomonas noxia ATCC 43541]
          Length = 207

 Score =  204 bits (518), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V ++     G IS++++ F ++   G+L + +  Q   +R+G   +K R  V   
Sbjct: 1   MANVAVYDMSHNQVGEISLNDEFFNVEMNAGLLHQAVVLQLASQRLGTHSTKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LAL+ ALSDK  +
Sbjct: 61  GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D +V+D L     KTK  V       ++   +        N + +  NIP +  +   G
Sbjct: 121 GDFIVLDQLDFDAPKTKAAVKLLSDFGVNAKSLFITADEAVNVERSTSNIPGVKAITASG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+DIL   KL ++K AI  +E+ F
Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206


>gi|269798549|ref|YP_003312449.1| ribosomal protein L4/L1e [Veillonella parvula DSM 2008]
 gi|282849865|ref|ZP_06259248.1| ribosomal protein L4/L1 family protein [Veillonella parvula ATCC
           17745]
 gi|294792795|ref|ZP_06757942.1| ribosomal protein L4/L1 family protein [Veillonella sp. 6_1_27]
 gi|294794549|ref|ZP_06759685.1| ribosomal protein L4/L1 family protein [Veillonella sp. 3_1_44]
 gi|313892995|ref|ZP_07826572.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|269095178|gb|ACZ25169.1| ribosomal protein L4/L1e [Veillonella parvula DSM 2008]
 gi|282580302|gb|EFB85702.1| ribosomal protein L4/L1 family protein [Veillonella parvula ATCC
           17745]
 gi|294454879|gb|EFG23252.1| ribosomal protein L4/L1 family protein [Veillonella sp. 3_1_44]
 gi|294456694|gb|EFG25057.1| ribosomal protein L4/L1 family protein [Veillonella sp. 6_1_27]
 gi|313442348|gb|EFR60763.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 207

 Score =  204 bits (518), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++  N  G   G I +++ +F ++  + ++ + +  Q   +R+G   +K R  V   
Sbjct: 1   MPTVATYNQSGVKVGEIQLNDAVFGVEVNEAVMHQAVVRQLSNERLGTHATKTRGMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P     A+P+K R LA++ ALSDK  +
Sbjct: 61  GRKPWKQKGTGRARAGSSRSPIWIGGGTTFGPQPRSYYKAMPRKARRLAVKSALSDKVNN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +++ V++ +     KTK ++    + ++ +A ++   + D N + +ARNI  +  L  +G
Sbjct: 121 SELYVLEEITLAAPKTKEVLNIINSFNVGDAKVLFITEGDVNVERSARNIQGVKALACEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N++D+L   KL ++K A+  +E+  
Sbjct: 181 MNIFDLLHYDKLFITKGAVAKIEEVL 206


>gi|110180274|gb|ABG54380.1| 23S ribosomal protein L4 [Brucella ceti]
 gi|110180278|gb|ABG54382.1| 23S ribosomal protein L4 [Brucella ceti]
          Length = 206

 Score =  204 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 156/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGT RARH S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  SKMYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|238018624|ref|ZP_04599050.1| hypothetical protein VEIDISOL_00459 [Veillonella dispar ATCC 17748]
 gi|303230124|ref|ZP_07316893.1| 50S ribosomal protein L4 [Veillonella atypica ACS-134-V-Col7a]
 gi|303231196|ref|ZP_07317934.1| 50S ribosomal protein L4 [Veillonella atypica ACS-049-V-Sch6]
 gi|237865095|gb|EEP66385.1| hypothetical protein VEIDISOL_00459 [Veillonella dispar ATCC 17748]
 gi|302514103|gb|EFL56107.1| 50S ribosomal protein L4 [Veillonella atypica ACS-049-V-Sch6]
 gi|302515185|gb|EFL57158.1| 50S ribosomal protein L4 [Veillonella atypica ACS-134-V-Col7a]
          Length = 207

 Score =  204 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++  N  G   G I +++ +F ++  + ++ + +  Q   +R+G   +K R  V   
Sbjct: 1   MPTVATYNQSGVKVGEIQLNDAVFGVEVNEAVMHQAVVRQLSNERLGTHATKTRGMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P     A+P+K R LA++ ALSDK  +
Sbjct: 61  GRKPWKQKGTGRARSGSSRSPIWIGGGTTFGPQPRSYYKAMPRKARRLAVKSALSDKVNN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +++ V++ +     KTK ++    + ++ +A ++   + D N + +ARNI  +  L  +G
Sbjct: 121 SELYVLEEITLAAPKTKEVLNIINSFNVGDAKVLFITEGDVNVERSARNIQGVKALACEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N++D+L   KL ++K A+  +E+  
Sbjct: 181 MNIFDLLHYDKLFITKGAVAKIEEVL 206


>gi|110180282|gb|ABG54384.1| 23S ribosomal protein L4 [Brucella ceti]
 gi|110180286|gb|ABG54386.1| 23S ribosomal protein L4 [Brucella ceti]
          Length = 206

 Score =  204 bits (518), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 118/206 (57%), Positives = 155/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGT RARH S    QFRGGG+A GPV     H LPKKV +L LRHALS K  ++
Sbjct: 61  SKMYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|229823534|ref|ZP_04449603.1| hypothetical protein GCWU000282_00832 [Catonella morbi ATCC 51271]
 gi|229786978|gb|EEP23092.1| hypothetical protein GCWU000282_00832 [Catonella morbi ATCC 51271]
          Length = 207

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 103/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S+   DG   G I ++  +F ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MTKVSLFKQDGSQIGEIELNAAVFGVEPNEDVIFDAVIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKVR LAL+  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALQSVLSQKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D L      TK   +    L +    ++     + N   +ARN+ N+ ++    
Sbjct: 121 GKLVVVDELSFAAPSTKEFKSVLNNLKVDAKTLLVLEGTNANAYFSARNLANVKVIDEGN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++    LV++K+A+  +E+  
Sbjct: 181 VNVLDVVNYDTLVITKAALSTVEEAL 206


>gi|210611126|ref|ZP_03288740.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787]
 gi|210152113|gb|EEA83120.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787]
          Length = 206

 Score =  203 bits (517), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +++ +F ++  + +L   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTTRVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D +   E KTK        L+  +  ++     + N  L+ARNI N+       
Sbjct: 121 NKFIVLDEMNFGEIKTKNFQNMLNNLE-VSKALVVLEDGNTNAALSARNIANVKTAWTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++++K+ +  +E+ +
Sbjct: 180 INVYDILKYNTVIVTKAVVATIEEVY 205


>gi|238928154|ref|ZP_04659914.1| ribosomal protein L4 [Selenomonas flueggei ATCC 43531]
 gi|238884114|gb|EEQ47752.1| ribosomal protein L4 [Selenomonas flueggei ATCC 43531]
          Length = 207

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V ++     G IS+S++ F ++   G+L + +  Q   +R+G   +K R  V   
Sbjct: 1   MANVAVYDMSHNQVGEISLSDEFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LAL+ ALSDK  +
Sbjct: 61  GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D +V+D L     KTK  V       ++   +        N + +  NIP +  +   G
Sbjct: 121 GDFIVLDQLDFGAPKTKAAVKLLSDFGVNAKSLFITADEAVNVERSTSNIPGVKAITASG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+DIL   KL ++K AI  +E+ F
Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206


>gi|307694151|ref|ZP_07636388.1| 50S ribosomal protein L4 [Ruminococcaceae bacterium D16]
          Length = 206

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V N+ G+  G I +SE +F ++P Q ++  V++      R G   +  R+EV+  
Sbjct: 1   MAKANVFNMAGQQVGEIELSEAVFGIEPNQAVVHEVVKNHLANCRQGTQSALTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG  F P P    + L KKV+ LAL+ ALS K  S
Sbjct: 61  GKKPWRQKGTGHARQGSTRAPQWTHGGIVFAPKPRDYSYTLNKKVKRLALKSALSAKAAS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            DI+V+D L     KTK +     A++ +   ++   +++     +ARNIP +     + 
Sbjct: 121 GDILVVDELKLDAIKTKDMRNFLNAVE-AGKSVVITPEVNEIVVKSARNIPGVVTTTAKI 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++VYDI+   +LV+ K+A+  +E+ F
Sbjct: 180 LSVYDIVNAKRLVIDKAALAIIEEVF 205


>gi|326803034|ref|YP_004320852.1| 50S ribosomal protein L4 [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650179|gb|AEA00362.1| 50S ribosomal protein L4 [Aerococcus urinae ACS-120-V-Col10a]
          Length = 207

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 119/206 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG   G I V +DIFA++P +  +  V+  Q   +R G    K RS V+  
Sbjct: 1   MAKINLYKQDGSQNGEIEVKDDIFAIEPNETAIFDVILMQRASRRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG+AFGP P    + LP+KVR LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWVGGGRAFGPTPRSYSYKLPRKVRRLALRSALSRKVSQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D L     KTK        L+++  +++   + + N  L+ARN+ N+ ++    
Sbjct: 121 DNLVVVDALSLDAPKTKEFKNILENLNVNEKVLVVVDKDNTNAHLSARNLSNVTVVDEDN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+   +K+++++SA+  +E+  
Sbjct: 181 VNVYDLENHAKVLITQSALSNVEEVL 206


>gi|304438363|ref|ZP_07398304.1| ribosomal protein L4/L1 family protein [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304368729|gb|EFM22413.1| ribosomal protein L4/L1 family protein [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 207

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 104/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V ++     G IS+++  F ++   G+L + +  Q   +R+G   +K R  V   
Sbjct: 1   MANVAVYDMAHNQVGEISLNDAFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LAL+ ALSDK  +
Sbjct: 61  GRKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D +V+D+L     KTK  V       +    +        N + +  NIP +  +   G
Sbjct: 121 GDFIVLDHLDFDAPKTKAAVKLLSDFGVDAKSLFITADEAVNVERSTSNIPGVKAITASG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+DIL   KL ++K AI  +E+ F
Sbjct: 181 INVFDILHHDKLFITKDAITRIEEVF 206


>gi|77462260|ref|YP_351764.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides 2.4.1]
 gi|126461136|ref|YP_001042250.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17029]
 gi|221638114|ref|YP_002524376.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131]
 gi|109893632|sp|Q3J5S1|RL4_RHOS4 RecName: Full=50S ribosomal protein L4
 gi|166199853|sp|A3PGL2|RL4_RHOS1 RecName: Full=50S ribosomal protein L4
 gi|254803750|sp|B9KL92|RL4_RHOSK RecName: Full=50S ribosomal protein L4
 gi|77386678|gb|ABA77863.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides 2.4.1]
 gi|126102800|gb|ABN75478.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17029]
 gi|221158895|gb|ACL99874.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131]
          Length = 206

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 123/206 (59%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V  LD    G I + + IF L+P+  IL RV+RWQ  + + G     G+S+V+Y+ 
Sbjct: 1   MKAEVIKLDASPAGSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH SK    FR GG   GP P    H L KK R+L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V++++   E KT  L    + L     L+IDG  ++ NF  AARN+  +++LP  G 
Sbjct: 121 NLIVLEDIALAEGKTAMLAKAVKELGWKRVLVIDGADINENFAKAARNLEGVDVLPSIGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206


>gi|315497974|ref|YP_004086778.1| ribosomal protein l4/l1e [Asticcacaulis excentricus CB 48]
 gi|315415986|gb|ADU12627.1| ribosomal protein L4/L1e [Asticcacaulis excentricus CB 48]
          Length = 210

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 102/207 (49%), Positives = 134/207 (64%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V  LD    G + VS+ +F L+  +  ILARV+ WQ  ++R G  K + R+E + T
Sbjct: 1   MKLDVITLDNGTAGSVDVSDAVFGLEEIRNDILARVVNWQLAKRRAGTHKVQTRNENSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKG+G ARH S+   QF GG +AFGPV       L KKVR+L LRHALS K  +
Sbjct: 61  GKKMYKQKGSGGARHGSRRAPQFVGGSRAFGPVVRSHAFDLQKKVRALGLRHALSSKAKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D       KT  L  +F  L L NALII G ++D NF LA+RNIPNI++LP  G
Sbjct: 121 GALIVLDQATLDSAKTAALRAKFETLGLKNALIIAGPEVDTNFALASRNIPNIDVLPSAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NVYD+LR   LVL+KSA+EA+E RFK
Sbjct: 181 LNVYDVLRRHTLVLTKSAVEAIEARFK 207


>gi|237821420|ref|ZP_04597265.1| 50S ribosomal protein L4 [Streptococcus pneumoniae CCRI 1974M2]
          Length = 207

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G++ G + +S+ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKEAGQVVLSDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGT RAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTRRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D L     KT        AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDALSFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANSDKLLVTQAAISKIEEVL 206


>gi|227501135|ref|ZP_03931184.1| ribosomal protein L4 [Anaerococcus tetradius ATCC 35098]
 gi|227216720|gb|EEI82121.1| ribosomal protein L4 [Anaerococcus tetradius ATCC 35098]
          Length = 207

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE+ G + ++E +F  +  +  +  V++ Q   KR G   +K RSEV   
Sbjct: 1   MPKVDILNIKGENVGSLELNETLFNTEISEHAVYEVVKNQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P P    + +PKK+R  AL   L+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKLND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D+L  +  KTK  V    A++      +   + D     + RNI  +++     
Sbjct: 121 NELVVLDSLSLENAKTKEAVKVLEAVNAGKKAYVVTAENDTLVYRSFRNIEGVDVAAASL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD++R +KLV++K AI  LE+ F
Sbjct: 181 INVYDLVRHNKLVITKDAIAKLEEVF 206


>gi|56698635|ref|YP_169012.1| 50S ribosomal protein L4 [Ruegeria pomeroyi DSS-3]
 gi|81558238|sp|Q5LLU7|RL4_SILPO RecName: Full=50S ribosomal protein L4
 gi|56680372|gb|AAV97038.1| ribosomal protein L4 [Ruegeria pomeroyi DSS-3]
          Length = 205

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 124/206 (60%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I + E +F L+P+  IL RV+RWQ    + G  K   +SEV+Y+ 
Sbjct: 1   MKLDVIKLDGTKAGNIDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVLTKSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH S+    FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGSRKSPTFRHGGVYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI+N  ++  KT  L  +   L    AL+IDG  ++  F  AARNI  +++LP  G 
Sbjct: 121 ELVVIENAEAE-GKTAALAKQVANLGWKRALVIDGAAVNEGFARAARNIEGLDILPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+A+EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAAVEALEARLK 205


>gi|312115688|ref|YP_004013284.1| ribosomal protein L4/L1e [Rhodomicrobium vannielii ATCC 17100]
 gi|311220817|gb|ADP72185.1| ribosomal protein L4/L1e [Rhodomicrobium vannielii ATCC 17100]
          Length = 206

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/206 (52%), Positives = 144/206 (69%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V  LD  + G + + + +FAL+P+  IL R++R+Q  +++ G  K+K RSEV    
Sbjct: 1   MKAEVITLDASNAGSVELDDAVFALEPRTDILQRMVRYQLSKRQAGTHKAKARSEVNGPN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG+ARH +    QFRGGG+  GPVP    H LPKKVR+LAL+HALS K  S+
Sbjct: 61  KKIYKQKGTGQARHGNDKPPQFRGGGRTAGPVPRSHAHDLPKKVRALALKHALSVKAKSD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D     E KT  L  +F  L LSNALIIDG  L  NF LAARNIPN+++LPVQGI
Sbjct: 121 ALVVLDKAEVTEAKTAQLRGKFAGLGLSNALIIDGAVLQDNFALAARNIPNVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+++A+EALE+RFK
Sbjct: 181 NVYDILRREKLVLTRAALEALEERFK 206


>gi|325479201|gb|EGC82298.1| 50S ribosomal protein L4 [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 207

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE+ G + ++E +F  +  +  +  V++ Q   KR G   +K RSEV   
Sbjct: 1   MPKVDILNIKGENVGSLELNETLFNTEISEHTVYEVVKNQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P P    + +PKK+R  AL   L+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+++L  +  KTK      +A++  +   I   + D     + RNI  +++     
Sbjct: 121 NELIVLEDLNLENAKTKEASQVLKAINAGDKAYIVTAENDNEVYRSFRNIEGVDVSAASL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+++ +KLV++K A+  LE+ F
Sbjct: 181 INVYDLVKHNKLVITKDAVAKLEEVF 206


>gi|297588192|ref|ZP_06946836.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC
           53516]
 gi|297574881|gb|EFH93601.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC
           53516]
          Length = 207

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 114/207 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N  GE+ G + ++E IF +   + ++  V+R Q   KR G   +K RSEV   
Sbjct: 1   MPKVQILNQQGENVGELELNEAIFGVDVNEHVVYEVVRNQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  F P P    +A+PKKVR LA++  L+DK   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTDKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L      TK  V   + +      ++   + D     + RNI N+ +   + 
Sbjct: 121 NEMIVLDKLSLDAISTKKAVEVLKNIKADKKALVVVDKNDDTLYRSFRNIENVAICEARL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           INVYD L+ + LV++  A++ LE+ F+
Sbjct: 181 INVYDCLKYNSLVITTDAVKILEEVFQ 207


>gi|259416401|ref|ZP_05740321.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B]
 gi|259347840|gb|EEW59617.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B]
          Length = 205

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 126/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I +SED+F L+P+  IL R++RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRMVRWQRNNAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI+N  ++  KT  L  +   L    AL+IDG  ++  F  AA+NI  +++LP  G 
Sbjct: 121 ELVVIENAEAE-GKTAALAKQVANLGWKRALVIDGAAVNEGFARAAKNIEGLDILPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+KSA+EALE R K
Sbjct: 180 NVYDILKRDTLVLTKSAVEALEARLK 205


>gi|329850208|ref|ZP_08265053.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19]
 gi|328840523|gb|EGF90094.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19]
          Length = 210

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/206 (48%), Positives = 131/206 (63%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V  LD    G + +S+ +F +   +  IL RV+ WQ  ++R G  K + R+E + T
Sbjct: 1   MKLDVITLDASAAGSVELSDLVFGISDIRADILHRVVNWQLAKRRAGTHKVQTRNENSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKG+G ARH S+   QF GG +AFGPV       LPKKVR+L LRHALS K   
Sbjct: 61  GKKMYKQKGSGGARHGSRRAPQFVGGSRAFGPVVRSHAFDLPKKVRALGLRHALSSKVKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D  V    KT  L   F  L L+NAL I G ++D NF LA+RNIPNI++LP  G
Sbjct: 121 GALIVLDQAVVASPKTSALKASFEKLGLNNALFITGAEVDTNFALASRNIPNIDVLPTAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR  KLVL+ +A+EA+E RF
Sbjct: 181 LNVYDILRRHKLVLTTAAVEAIEARF 206


>gi|168334351|ref|ZP_02692538.1| ribosomal protein L4/L1e [Epulopiscium sp. 'N.t. morphotype B']
          Length = 207

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 111/207 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G+  G +S+ + IF ++ ++ ++ + +      +R G   +K R+EV   
Sbjct: 1   MANVSVLNMEGKQVGEVSLDDGIFGVEIKEHLVHQAVVSYLANQRQGTQCTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKG GRAR  S    Q+ GGG  F P P      + +K R  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGGGRARQGSIRSPQWTGGGVVFAPKPRDYSFKVNRKERQQALKCALTSRVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+V+D L   E KTK +V    AL+L  AL++       N ++AA NI  +    V  
Sbjct: 121 KKIVVLDELKLTEAKTKSMVKVLDALNLKKALVVTEGDCAMNVKIAAGNIQGVKTSAVNN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           INVYD+L+    V++K A+  +E+ +K
Sbjct: 181 INVYDVLKYDTFVVTKEALSKIEEVYK 207


>gi|83949794|ref|ZP_00958527.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM]
 gi|83837693|gb|EAP76989.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM]
          Length = 205

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + EDIF L+P+  IL RV+RWQ  + + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQQGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GP P    H LPKKVR L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKVKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++I+   S   KT  L  + + L    ALIIDG +++  F  AARNI  +++LP  G 
Sbjct: 121 ELVIIEAADS-AGKTSALAKQVKDLGWKRALIIDGAEVNAEFAKAARNIEGLDVLPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205


>gi|313895056|ref|ZP_07828613.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975951|gb|EFR41409.1| 50S ribosomal protein L4 [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 207

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 104/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V ++  +  G I +S+D F ++   G+L + +  Q   +R+G   +K R  V   
Sbjct: 1   MANVAVYDMSHKQVGEIDLSDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LAL+ ALSDK  +
Sbjct: 61  GKKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D +V+++L     KTK  V       +    +        N   +  NIP +  +   G
Sbjct: 121 GDFIVLESLDFDAPKTKQAVKLLNDFGVDAKSLFITADEAVNVARSTSNIPGVKAITAAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+DIL   KL ++K A+  +E+ F
Sbjct: 181 INVFDILHHDKLFITKDAVTRIEEVF 206


>gi|260425505|ref|ZP_05779485.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45]
 gi|260423445|gb|EEX16695.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45]
          Length = 205

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 129/206 (62%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + ++++IF L+P+  IL RV+RWQ  + + G  K K RSEV+Y+ 
Sbjct: 1   MKLDVIKLDGTAAGEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH S+    FR GG   GP P    H LPKKVR+L L+ ALS K  S 
Sbjct: 61  KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRALGLKMALSAKAKSG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID   S+  KTK L  + ++L    ALIIDG  ++  F  AA NI  +++LP  G 
Sbjct: 121 ALVVIDTADSE-GKTKALAAQVKSLGWKRALIIDGAAVNEAFAKAAANIDGLDVLPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205


>gi|197104697|ref|YP_002130074.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1]
 gi|226730702|sp|B4R8L8|RL4_PHEZH RecName: Full=50S ribosomal protein L4
 gi|196478117|gb|ACG77645.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1]
          Length = 212

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 99/207 (47%), Positives = 135/207 (65%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V  LDG   G I + +DIF ++  +  IL R + WQ  ++R G  K + R+EV+ T
Sbjct: 1   MKLDVIKLDGGKGGSIELPDDIFGIEEIRADILQRCVTWQLAKRRAGTHKIQVRNEVSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH S+  +QF GG KA GPV       LPKKVR+LALRHALS K   
Sbjct: 61  GKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKVRALALRHALSSKAKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+    E KT  L   F  + ++NAL+I G Q+D N +LAARNIPN+++LP  G
Sbjct: 121 GSLIVLDSATLTEAKTAALRASFEKIGVTNALVIAGAQVDNNLKLAARNIPNVDVLPNAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NVYD+LR   LVL+K A+ A++ RF+
Sbjct: 181 LNVYDVLRRRTLVLTKDAVAAIQARFQ 207


>gi|303240970|ref|ZP_07327481.1| ribosomal protein L4/L1e [Acetivibrio cellulolyticus CD2]
 gi|302591556|gb|EFL61293.1| ribosomal protein L4/L1e [Acetivibrio cellulolyticus CD2]
          Length = 207

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 115/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + +++G+  G I +SE +F +   + ++ + +  Q   KR G   +K +SEV   
Sbjct: 1   MPKVDLYDMNGKVVGDIDLSEAVFGIDVNKEVVHQAVVNQLANKRQGTQSTKTKSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+  GG   GP P    + LPKKV+ LAL+  LS K   
Sbjct: 61  GIKPWKQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTLPKKVKRLALKSVLSSKVSE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L   + KTK +    + L +    +I     + N + +A NIP +  L    
Sbjct: 121 NEIIVLDKLNFDKIKTKQMAEVLKNLKIDGTAVILIADKNENVERSANNIPGVKTLLANT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDI++ SKL+++K A+  +E+ +
Sbjct: 181 INVYDIVKHSKLIITKDAVSKVEEVY 206


>gi|125975385|ref|YP_001039295.1| 50S ribosomal protein L4P [Clostridium thermocellum ATCC 27405]
 gi|256005328|ref|ZP_05430294.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360]
 gi|281419347|ref|ZP_06250362.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20]
 gi|166234659|sp|A3DJH3|RL4_CLOTH RecName: Full=50S ribosomal protein L4
 gi|125715610|gb|ABN54102.1| LSU ribosomal protein L4P [Clostridium thermocellum ATCC 27405]
 gi|255990764|gb|EEU00880.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360]
 gi|281406967|gb|EFB37230.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20]
 gi|316939501|gb|ADU73535.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 1313]
          Length = 208

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +++G+  G I++ +DIF ++  +  + +V+  Q   +R G   +K +SEV   
Sbjct: 1   MPKVDVYDINGKVVGEINLRDDIFGIEVNKHAIHQVIVNQLANRRQGTQSTKTKSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S   +Q+  GG A GP P    +A+PKK+R LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARHGSIRSAQWVKGGIALGPKPRSYKYAVPKKLRRLALKSALSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+D+L   E KTK +    + L +++   +      +RN +L+ARNIP +  L V 
Sbjct: 121 NELLVLDSLNFDEIKTKQMANVLKNLKVNDTTAVLVLADKNRNVELSARNIPGLKTLFVN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NVYDI+R  K +++K A+  +E+ +
Sbjct: 181 TMNVYDIIRHDKFIITKDAVAKVEEVY 207


>gi|307946287|ref|ZP_07661622.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4]
 gi|307769951|gb|EFO29177.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4]
          Length = 206

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 101/206 (49%), Positives = 146/206 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+ L+G   G I+VS++IF L+P+  ++ RV+RWQ  +++ G  K+  RSEV  T 
Sbjct: 1   MELQVKTLEGGAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKTLQRSEVTGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH ++   QFRGGGKAFGP+     H LPKKVR L L+H LS K  ++
Sbjct: 61  KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPIVRDHSHDLPKKVRVLGLKHVLSAKAKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++  + E KTK L  +     L++ALIIDG ++D NF LA+RNIP++++LPVQGI
Sbjct: 121 SLIVVEDAKAAEAKTKALKEQLAKAGLTSALIIDGAEVDANFALASRNIPHVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI++ + LVL+K+A+ ALE+RFK
Sbjct: 181 NVYDIMQANTLVLTKAAVSALEERFK 206


>gi|326203895|ref|ZP_08193757.1| ribosomal protein L4/L1e [Clostridium papyrosolvens DSM 2782]
 gi|325985993|gb|EGD46827.1| ribosomal protein L4/L1e [Clostridium papyrosolvens DSM 2782]
          Length = 207

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE  G I + +++F  +    +L  V+  Q   KR G   +K +SEV   
Sbjct: 1   MPKVDLYNMKGEVVGDIQLCDNVFGAEVNNEVLHAVVVNQLANKRQGTQSTKTKSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+  GG   GP P    + +PKKV+ +A++ AL+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTMPKKVKRIAMKSALTSKVSG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I V+D L  +  KTK +V     L + ++ +I     + N   +ARNIP I    V  
Sbjct: 121 NEIFVLDALTLEAIKTKSMVGVLSNLKVDSSALIVIDSKNENIVKSARNIPGIKTAYVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV+DIL+  K +++K A+E +E+ +
Sbjct: 181 LNVFDILKYDKFIITKDAVEKVEEVY 206


>gi|160947699|ref|ZP_02094866.1| hypothetical protein PEPMIC_01634 [Parvimonas micra ATCC 33270]
 gi|158446833|gb|EDP23828.1| hypothetical protein PEPMIC_01634 [Parvimonas micra ATCC 33270]
          Length = 207

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N  GE  G I ++E IF ++  + ++  V++     +R G   +K R+EV   
Sbjct: 1   MPKVNVYNQLGEVVGDIELNEAIFGIEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q++GGG  F P P    +++PKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMKSVLSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++ ++D L      TK      + L L    +I   + +     +  N+P +  + V  
Sbjct: 121 GELRILDALTIDAFSTKKAKEILKNLSLETKTMIVLPEGNDMIVKSFANLPKVETVVVDY 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD++R   LV+ K A+  +E+ +
Sbjct: 181 MNVYDLMRFDNLVIVKDALSKIEEVY 206


>gi|160894755|ref|ZP_02075530.1| hypothetical protein CLOL250_02306 [Clostridium sp. L2-50]
 gi|156863689|gb|EDO57120.1| hypothetical protein CLOL250_02306 [Clostridium sp. L2-50]
          Length = 206

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 106/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V +++G++   + +++ +F ++  + ++   +  Q    R G   +K RSEV+  
Sbjct: 1   MASVKVYDIEGKEVETLELNDSVFGVEINEHLMHLAVVGQQANSRQGTQSAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK + LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSAKLAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++V+D +  +E KT         L  +   ++     +    L+A NIP +       
Sbjct: 121 DKLVVVDKIELEEVKTSVFAKILANLK-APKSLVVTKDKNDKVVLSANNIPTVKTTATNS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++VYDIL+  KLVL+K A+ A+E+ +
Sbjct: 180 LSVYDILKYDKLVLTKDAVAAIEEVY 205


>gi|254463733|ref|ZP_05077144.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I]
 gi|206684641|gb|EDZ45123.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I]
          Length = 205

 Score =  203 bits (516), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 126/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I +SED+F L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGDIELSEDLFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FR GG   GPV     H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++I++  ++  KT  L  + + L    ALIIDG  ++  F  A+RNI  +++LP  G 
Sbjct: 121 ELVIIEDAAAE-GKTAALAKQVKNLGWKRALIIDGASVNEGFLQASRNIEGLDILPTIGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205


>gi|260589278|ref|ZP_05855191.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583]
 gi|331082684|ref|ZP_08331807.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260540359|gb|EEX20928.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583]
 gi|330400303|gb|EGG79945.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 206

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +++ +F ++    ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVSVYNMEGKEVGTMELNDAVFGVEINDHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK R  AL+  L+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWAGGGVVFAPTPRDYSLKMNKKERRAALKSVLTSRVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L   E KTK +          +  ++     D N  L+ RNIP++       
Sbjct: 121 NKLIVLDELKLDEVKTKAMQNVLNN-LNVSKALVVLADNDANVVLSTRNIPDVVTALPNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+ + ++L+K++  A+E+ +
Sbjct: 180 INVYDVLKYNTVILTKASAAAIEEVY 205


>gi|22536244|ref|NP_687095.1| 50S ribosomal protein L4 [Streptococcus agalactiae 2603V/R]
 gi|25010134|ref|NP_734529.1| 50S ribosomal protein L4 [Streptococcus agalactiae NEM316]
 gi|76787912|ref|YP_328785.1| 50S ribosomal protein L4 [Streptococcus agalactiae A909]
 gi|76798215|ref|ZP_00780465.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 18RS21]
 gi|77406989|ref|ZP_00784004.1| ribosomal protein L4/L1 family [Streptococcus agalactiae H36B]
 gi|77412287|ref|ZP_00788603.1| ribosomal protein L4/L1 family [Streptococcus agalactiae CJB111]
 gi|77414565|ref|ZP_00790708.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 515]
 gi|46577261|sp|Q8E2D0|RL4_STRA5 RecName: Full=50S ribosomal protein L4
 gi|46577263|sp|Q8E7T7|RL4_STRA3 RecName: Full=50S ribosomal protein L4
 gi|109893642|sp|Q3K3W8|RL4_STRA1 RecName: Full=50S ribosomal protein L4
 gi|22533064|gb|AAM98967.1|AE014194_12 ribosomal protein L4 [Streptococcus agalactiae 2603V/R]
 gi|23094485|emb|CAD45704.1| ribosomal protein L4 [Streptococcus agalactiae NEM316]
 gi|76562969|gb|ABA45553.1| ribosomal protein L4 [Streptococcus agalactiae A909]
 gi|76586424|gb|EAO62932.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 18RS21]
 gi|77159363|gb|EAO70531.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 515]
 gi|77161677|gb|EAO72672.1| ribosomal protein L4/L1 family [Streptococcus agalactiae CJB111]
 gi|77174394|gb|EAO77248.1| ribosomal protein L4/L1 family [Streptococcus agalactiae H36B]
 gi|319743994|gb|EFV96374.1| 50S ribosomal protein L4 [Streptococcus agalactiae ATCC 13813]
          Length = 207

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + ++E IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++NL     KT    +   AL + + +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVENLSFAAPKTAEFASVLSALSIDSKVLVILEEGNEFAALSARNLPNVTVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E   
Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEGVL 206


>gi|295425651|ref|ZP_06818338.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus
           DSM 11664]
 gi|295064667|gb|EFG55588.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus
           DSM 11664]
          Length = 205

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 122/206 (59%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P + ++   +  Q   +R G SK K RS V   
Sbjct: 1   MANLKVIDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGQRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    +++P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK  V+   +L + + +++     D+N QL+A+N+P + ++PV G
Sbjct: 121 KNLIVLDKLTMSAPKTKEFVSILDSLKVESKVLVVSD--DKNVQLSAKNLPKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVEDAVNYDKLILTQDAVKKIEEVL 204


>gi|225387236|ref|ZP_03757000.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme
           DSM 15981]
 gi|225046654|gb|EEG56900.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme
           DSM 15981]
          Length = 206

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +++ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNMEGKEVGSMELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F PVP      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWKGGGVVFAPVPRDYTITLNKKEKRAALKSALTSRVQG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              +V+D L   E KTK        L   N  ++     D+N  L+ARNI ++    V  
Sbjct: 121 GKFIVVDELKFDEIKTKKFQNVMDNLK-VNKALVVLADNDQNAVLSARNIADVKTTQVNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+ S +V +K+A+  +E+ +
Sbjct: 180 MNVYDILKYSTVVATKAAVATIEEVY 205


>gi|118591183|ref|ZP_01548582.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614]
 gi|118436259|gb|EAV42901.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614]
          Length = 206

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 150/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+ L+G   G I+VS++IF L+P+  ++ RV+RWQ  +++ G  K+ GRSEV+ T 
Sbjct: 1   MELQVKTLEGGAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKALGRSEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH +K   QFRGGGKAFGP+     H LPKKVR+L L+HALS K  ++
Sbjct: 61  KKFVRQKGSGGARHGNKKAPQFRGGGKAFGPIVRDHSHDLPKKVRALGLKHALSAKAMTD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+V+++  + E KTK L  +   L L++ALIIDG ++D NF LA+RNIP++++LPVQGI
Sbjct: 121 SIVVVEDAKAAEAKTKALKAQLSKLGLTSALIIDGAEVDANFALASRNIPHLDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR + LVL+K+A+ ALE+R K
Sbjct: 181 NVYDILRANTLVLTKAAVSALEERLK 206


>gi|257790718|ref|YP_003181324.1| 50S ribosomal protein L4/L1e [Eggerthella lenta DSM 2243]
 gi|317488571|ref|ZP_07947116.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA]
 gi|325832045|ref|ZP_08165142.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1]
 gi|257474615|gb|ACV54935.1| ribosomal protein L4/L1e [Eggerthella lenta DSM 2243]
 gi|316912313|gb|EFV33877.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA]
 gi|325486366|gb|EGC88818.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1]
          Length = 207

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 103/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + +++  G+  G   ++  +F ++P   ++ +V+R Q    R G   +K R +V   
Sbjct: 1   MTTIEIKDASGKKAGTADLAASVFGIEPNVPVMHQVVRAQRASWRQGTHDTKTRGQVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+ GGG  FGP P      +  K   LA+R ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNNKEVKLAMRSALSAKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++ V+D    ++  TK  V   +AL L     +     D N  L+ RNIP +N+LPV  
Sbjct: 121 GELFVVDAFNFEKPSTKAAVAALKALGLERRTTLVIDDEDVNTYLSFRNIPTVNILPVSA 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            N Y+++    LV +  A++ +E+  
Sbjct: 181 ANTYELIDNKALVFTADALKRIEEVL 206


>gi|153816251|ref|ZP_01968919.1| hypothetical protein RUMTOR_02500 [Ruminococcus torques ATCC 27756]
 gi|145846434|gb|EDK23352.1| hypothetical protein RUMTOR_02500 [Ruminococcus torques ATCC 27756]
          Length = 206

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N++G++   I +++ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK +  AL+ ALS +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALSSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D +   E KTK            N  ++     + N +++ARNI  +       
Sbjct: 121 NKFIVVDEMNFDEIKTKKF-QNVLNNLNVNKALVVLEDGNTNAEISARNIAGVKTARTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+A+  +E+ +
Sbjct: 180 INVYDILKYNTVIATKAAVATIEEVY 205


>gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328]
 gi|302379795|ref|ZP_07268279.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3]
 gi|303234753|ref|ZP_07321379.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4]
 gi|226730666|sp|B0RZU1|RL4_FINM2 RecName: Full=50S ribosomal protein L4
 gi|167830658|dbj|BAG07574.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328]
 gi|302312383|gb|EFK94380.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3]
 gi|302494094|gb|EFL53874.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4]
          Length = 207

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 114/207 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N  GE+ G + ++E IF +   + ++  V++ Q   KR G   +K RSEV   
Sbjct: 1   MPKVQILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  F P P    +A+PKKVR LA++  L++K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTEKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L      TK  V   + +      ++   + D     + RNI N+ +   + 
Sbjct: 121 NEMIVLDKLNLDAISTKKAVEVLKNIKADKKALVVIDKNDDTLYRSFRNIENVAICEAKL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           INVYD L+ + LV++  A++ LE+ F+
Sbjct: 181 INVYDCLKYNSLVITTDAVKILEEVFQ 207


>gi|260584417|ref|ZP_05852164.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633]
 gi|260157935|gb|EEW93004.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633]
          Length = 207

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 110/207 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG   G I ++ DIF ++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVTLYKQDGTKNGEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++ L     KTK        L +   +++     +   QLAARNIPN+ ++    
Sbjct: 121 QKLVVVEALQFDAPKTKEFAQVLANLKVDTKVLVVVESSNEFAQLAARNIPNVTVVDETQ 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           + V D++   KLVL+++A+  +E+  +
Sbjct: 181 VTVLDVVNNDKLVLTQAALSKVEEGLQ 207


>gi|146297284|ref|YP_001181055.1| ribosomal protein L4/L1e [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|166234648|sp|A4XLS9|RL4_CALS8 RecName: Full=50S ribosomal protein L4
 gi|145410860|gb|ABP67864.1| LSU ribosomal protein L4P [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 208

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G+  G I +++ IF +     +L + +      +R G   +K R+EV   
Sbjct: 1   MPKVPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  F   P      LPKKVR LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+D     + +TK ++   + L   +   +I   + +   Q + +NIP +  L V 
Sbjct: 121 NNLIVLDKWDMNQYRTKEVIRVLKNLGLENEKALIVIPEKNEYLQKSTKNIPEVKTLQVG 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+DIL+  K ++ + A++ +E+ +
Sbjct: 181 NLNVFDILKYDKFIILQDAVKKVEEVY 207


>gi|306830303|ref|ZP_07463474.1| ribosomal protein L4/L1 family protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304427550|gb|EFM30651.1| ribosomal protein L4/L1 family protein [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 207

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP      + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTSRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + +++L     KT        AL++ + +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVESLSFAAPKTAEFANVLSALNVDSKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTKEAISTIEEVL 206


>gi|153812866|ref|ZP_01965534.1| hypothetical protein RUMOBE_03273 [Ruminococcus obeum ATCC 29174]
 gi|149831078|gb|EDM86167.1| hypothetical protein RUMOBE_03273 [Ruminococcus obeum ATCC 29174]
          Length = 206

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N++G + G + +++ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK R  AL+ AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D+L   E KTK +         ++  ++     D+   L+ARNI ++    V  
Sbjct: 121 NKLVVVDSLALAEAKTKEMQKVL-TNLKADKALVVTADDDQKVVLSARNIADVQTATVNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+++ + +V++K A+ ++E+ +
Sbjct: 180 INVYDVMKHNTVVVTKDAVASIEEVY 205


>gi|291562767|emb|CBL41583.1| LSU ribosomal protein L4P [butyrate-producing bacterium SS3/4]
          Length = 206

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +++ +F ++  + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNMEGKEVGTIELNDAVFGVEVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGMVFAPTPRDYTITLNKKEKRAALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK        L   +  ++     D+N  L+ARNIP +    V  
Sbjct: 121 NKFVVVDELKFDEVKTKNFKAVMNNLK-VSKALVVLADNDQNTVLSARNIPEVKTSLVNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+DIL+ + +V +K+A+ ++E+ +
Sbjct: 180 INVFDILKYNTVVATKAAVASIEEVY 205


>gi|302876533|ref|YP_003845166.1| 50S ribosomal protein L4/L1e [Clostridium cellulovorans 743B]
 gi|307687206|ref|ZP_07629652.1| 50S ribosomal protein L4 [Clostridium cellulovorans 743B]
 gi|302579390|gb|ADL53402.1| ribosomal protein L4/L1e [Clostridium cellulovorans 743B]
          Length = 206

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G++ G I +++++FA K  +  + +V+      KR G   +K R+EV+  
Sbjct: 1   MPTVGLFNKEGQNVGDIQLNDNVFAAKISEAAVHQVVVALLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK ++  A++  L+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRSPQWIHGGIVFAPKPRDYRVSIPKSMKRTAMKSVLTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+++L     KTK  V   +A +     ++   + + N   + RN+  + ++PV  
Sbjct: 121 NELVVLESLAFDAPKTKEAVAMLKAFE-VKKALVVVAESNENVYKSIRNVEGVEVIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+  K++++K A+  +E+ +
Sbjct: 180 INVYDLLKYPKVLITKDAVSKIEEVY 205


>gi|294852569|ref|ZP_06793242.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026]
 gi|294821158|gb|EFG38157.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026]
          Length = 206

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/206 (58%), Positives = 157/206 (76%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGTGRARH S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDMLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|257067059|ref|YP_003153315.1| 50S ribosomal protein L4/L1e [Anaerococcus prevotii DSM 20548]
 gi|256798939|gb|ACV29594.1| ribosomal protein L4/L1e [Anaerococcus prevotii DSM 20548]
          Length = 207

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE+ G + ++E +F  +  +  +  V++ Q   KR G   +K RSEV   
Sbjct: 1   MPKVDILNIKGENVGSLELNETLFNTEISEHSVYEVVKNQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P P    + +PKK+R  AL   L+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVVD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D+L  +  KTK       A++      +   + D N   + RNI  +++     
Sbjct: 121 GELIVLDDLKLENNKTKEAAAVLNAVEAGKKAYVVTAENDNNVYRSFRNIEGVDVASASL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD++R +KLV++K AI  LE+ F
Sbjct: 181 INVYDLVRHNKLVITKDAIAKLEEVF 206


>gi|146278567|ref|YP_001168726.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17025]
 gi|166199854|sp|A4WVK7|RL4_RHOS5 RecName: Full=50S ribosomal protein L4
 gi|145556808|gb|ABP71421.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17025]
          Length = 206

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 123/206 (59%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V  LD    G I + + IF L+P+  IL RV+RWQ  + + G     G+S+V+Y+ 
Sbjct: 1   MKAEVIKLDASSAGSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH SK    FR GG   GP P    H L KK R+L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI+++   E KT  L    + L     L+IDG  ++ NF  AARN+  I++LP  G 
Sbjct: 121 NLIVIEDIAMSEAKTALLAKAVKELGWKRVLVIDGADINENFAKAARNLEGIDVLPSIGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206


>gi|167771266|ref|ZP_02443319.1| hypothetical protein ANACOL_02624 [Anaerotruncus colihominis DSM
           17241]
 gi|167666517|gb|EDS10647.1| hypothetical protein ANACOL_02624 [Anaerotruncus colihominis DSM
           17241]
          Length = 207

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V ++ G+    I +S+ +F + P    +   +      +R G   +  R+EV+  
Sbjct: 1   MPKVQVFDMAGKAVSEIELSDAVFGITPNPVAVHACVVNYLANQRQGTQSTLTRTEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+R GG A GP P    + L KK++ LA++   SDK   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWRKGGIALGPKPRSYRYTLNKKLKRLAIKSVFSDKVAG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D++  +  KTK +V   +AL      +I   +LD+    +A NIP +    V  
Sbjct: 121 SNLIVVDSIALEGFKTKAVVEMLKALGADKKALILMPELDQKLVKSAANIPGVKTALVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD++ C K ++ K A+  LE+ +
Sbjct: 181 INVYDLVNCDKFIVCKDAVAKLEEVY 206


>gi|159042833|ref|YP_001531627.1| 50S ribosomal protein L4 [Dinoroseobacter shibae DFL 12]
 gi|189029501|sp|A8LM49|RL4_DINSH RecName: Full=50S ribosomal protein L4
 gi|157910593|gb|ABV92026.1| 50S ribosomal protein L4/L1e [Dinoroseobacter shibae DFL 12]
          Length = 205

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/206 (46%), Positives = 129/206 (62%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDGE  G + + E +F L+P+  IL RV+RWQ  + + G  K K RSEV+Y+ 
Sbjct: 1   MKLDVIKLDGEAAGSVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FR GG   GP P    H LPKK R L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRKGGIYKGPTPRSHAHDLPKKFRKLGLKHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VID + + E KT  L  + + L    AL+IDG Q+D  F  AA NI  +++LP  G 
Sbjct: 121 ELVVID-MATSEGKTATLAKQIKNLGWKRALVIDGAQVDAGFAKAAANIDTLDVLPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205


>gi|300857245|ref|YP_003782229.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528]
 gi|300437360|gb|ADK17127.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528]
          Length = 206

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 116/206 (56%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +G+      +S+ +F ++  +  + +V+      KR G   +K R+EV+  
Sbjct: 1   MPKVGLFNKEGQKVEDFELSDKVFGVEVNENAVHQVVVALLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F   P     +L K V+ +A++ ALS K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAVKPRDYRISLTKSVKRVAMKSALSSKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V++NL  +  KTK +V    A + +   +I   + ++N  ++ RNI  ++++PV  
Sbjct: 121 NEMVVLENLELETPKTKEIVKMLDAFN-AKKALIVTAESNKNVYVSGRNIQGVSVIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L+  KL+++K A+  +E+ +
Sbjct: 180 LNVYDLLKYEKLIITKDAVSKIEEVY 205


>gi|254502843|ref|ZP_05114994.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11]
 gi|222438914|gb|EEE45593.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11]
          Length = 206

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 106/206 (51%), Positives = 149/206 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+ L+G   G I+VS++IF L P+  ++ RV+RWQ  +++ G  K+ GRSEV  + 
Sbjct: 1   MELQVKTLEGGAAGSITVSDEIFGLDPRTDLIHRVVRWQLAKRQAGTHKTLGRSEVTGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH +K   QFRGGG+AFGPV     H LPKKVR L L+HALS K  ++
Sbjct: 61  KKFVRQKGSGGARHGNKKAPQFRGGGRAFGPVVRDHGHDLPKKVRVLGLKHALSAKAKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+V+++  + E KTK L ++   L L++AL+IDG ++D NF LA+RNIP++++LPVQGI
Sbjct: 121 SIVVVEDAKAAEAKTKALKSQLNKLGLTSALVIDGAEVDNNFALASRNIPHLDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR + LVL+K+A+ ALE+RFK
Sbjct: 181 NVYDILRANTLVLTKAAVSALEERFK 206


>gi|167755913|ref|ZP_02428040.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402]
 gi|237733229|ref|ZP_04563710.1| 50S ribosomal protein L4 [Mollicutes bacterium D7]
 gi|167703905|gb|EDS18484.1| hypothetical protein CLORAM_01433 [Clostridium ramosum DSM 1402]
 gi|229383610|gb|EEO33701.1| 50S ribosomal protein L4 [Coprobacillus sp. D7]
          Length = 207

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ + V N +G +   + ++E +F ++P +  L  ++  Q    R G  K K R+EV   
Sbjct: 1   MLTVKVYNQEGSEVKDLELNEAVFGIEPNKQALFDMVLLQRASLRQGTHKVKNRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      L +KVR LAL+ ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYKFKLNRKVRRLALKSALSTKIND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+ M ++ +     KTK +V     L+     +I   ++  N   +A NIP + LL  + 
Sbjct: 121 NEFMALEAIKFDAPKTKEMVKVLANLEAPVKTLIVVDEICPNVARSANNIPGVKLLDAKH 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL  +KL+++++AI+++E+  
Sbjct: 181 VNVYDILNSNKLIMTEAAIKSVEEVL 206


>gi|327458432|gb|EGF04788.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1]
          Length = 207

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++ G + +++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +D+L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 NKFVAVDSLSFTAPKTAEFAKVLAALSIDTKVLVILEEGNEFAALSARNLPNVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++++ I  +E+  
Sbjct: 181 ASVLDIVNSDKLLVTQAVISKIEEVL 206


>gi|328884427|emb|CCA57666.1| LSU ribosomal protein L4p [Streptomyces venezuelae ATCC 10712]
          Length = 216

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 105/202 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + + E+IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKTGTVELPEEIFGAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK++  ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKVAALRGALSDRATH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V  E  TK   T F  +     L++   + D    L+ARN+P +++L    
Sbjct: 121 SRIHVVTGVVEGEISTKAAKTLFGKISERKNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++    +V +K+A+E+ 
Sbjct: 181 LNTYDVIVSDDVVFTKAALESF 202


>gi|299143193|ref|ZP_07036273.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517678|gb|EFI41417.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 207

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 116/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G     I ++E+IF +   +  +  V++     +R G   +K R+EV   
Sbjct: 1   MPKIQVVNMEGAAVSEIELNENIFDIDINEHAVYLVVKNILANRRQGTKSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  F P P    +  PKKVR LALR AL+ K   
Sbjct: 61  GRKPWKQKGTGRARQGSIRSPQWRGGGIVFAPKPRDFSYTTPKKVRRLALRSALTSKVRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D++   + KTK  V   +A+      ++     D   ++AARNIPN+     + 
Sbjct: 121 NEMIVVDDIKMNDAKTKNFVQMLKAIKADPKALVVVAGYDEKVKIAARNIPNVKTTMAEN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + LV+++ A+  +E+ F
Sbjct: 181 INVYDILKYNSLVITEDALRVIEEVF 206


>gi|182678338|ref|YP_001832484.1| 50S ribosomal protein L4 [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|226730620|sp|B2IK63|RL4_BEII9 RecName: Full=50S ribosomal protein L4
 gi|182634221|gb|ACB94995.1| ribosomal protein L4/L1e [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 206

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 145/206 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ + +++GE  G I + + IF L+P+  ++AR++R+Q  ++R G  +S GR+++  TG
Sbjct: 1   MKIDITSVNGETAGSIDLDDAIFGLEPRVDLIARMIRYQLAKRRAGTHQSLGRADIHRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH S    QFRGGGKAFGPV     H LPKK+R+LAL+HALS K    
Sbjct: 61  KKMYKQKGTGSARHGSARAPQFRGGGKAFGPVARSHEHDLPKKIRALALKHALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I++ ++    E KTK L   F  + L+NALIIDG +L+ NF LAARNIP I++LPVQGI
Sbjct: 121 GIIIWNDAKIPEAKTKGLKANFEKIGLTNALIIDGAELETNFSLAARNIPQIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDI+R  KLVL+ +AI ALE RFK
Sbjct: 181 NVYDIVRRDKLVLTTAAINALEARFK 206


>gi|153952862|ref|YP_001393627.1| 50S ribosomal protein L4 [Clostridium kluyveri DSM 555]
 gi|219853527|ref|YP_002470649.1| hypothetical protein CKR_0184 [Clostridium kluyveri NBRC 12016]
 gi|189029496|sp|A5N4P8|RL4_CLOK5 RecName: Full=50S ribosomal protein L4
 gi|254803727|sp|B9DYB0|RL4_CLOK1 RecName: Full=50S ribosomal protein L4
 gi|146345743|gb|EDK32279.1| RplD [Clostridium kluyveri DSM 555]
 gi|219567251|dbj|BAH05235.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 206

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N +G+      +S+ +F ++  Q ++ +V+      KR G   +K R+EV+  
Sbjct: 1   MPIVGLFNKEGQKITDFELSDKVFGVEVNQYVMHQVVVALLANKRQGTQSAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F   P     ++PK  R LA++ ALS K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRSPQWIHGGVVFAVKPRSYRISVPKSARRLAMKSALSSKVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N I+V+++L     KTK +V    A + +   +I   + ++N   +ARNI  ++++PV  
Sbjct: 121 NQIVVLESLEMDTPKTKEVVKILDAFE-AKKTLIVTAESNQNVYKSARNIQGVSVIPVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L+  KL+++K A+  +E+ +
Sbjct: 180 LNVYDLLKFDKLIITKDAVSKIEEVY 205


>gi|319757242|gb|ADV69184.1| 50S ribosomal protein L4 [Streptococcus suis JS14]
          Length = 207

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +  G+  G + +++ IF ++P Q ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVTLFDQTGKQAGEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FG  P    + LP+KVR LAL+   S+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGTTPRSYAYKLPQKVRRLALKSVYSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  + +++L     KT        AL + + +++   + +    L+ARNIP + +     
Sbjct: 121 NKFVAVNSLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNIPGVKVATATT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI    KL+++++AI  +E+  
Sbjct: 181 ASVLDIANADKLLVTQAAISKIEEVL 206


>gi|313903150|ref|ZP_07836544.1| LSU ribosomal protein L4P [Thermaerobacter subterraneus DSM 13965]
 gi|313466652|gb|EFR62172.1| LSU ribosomal protein L4P [Thermaerobacter subterraneus DSM 13965]
          Length = 212

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 4/210 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N  GE  G I +S+ +F    ++ ++ + +      +R G + +K R  V+  
Sbjct: 1   MPRVAVYNTQGERVGEIELSDAVFGAPVREALMHQAVVRYLANQRRGTAATKTRGMVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+R GG  FGP P      LPKK R  ALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPQWRKGGIVFGPQPRDYTQDLPKKARRAALRSALSAKVAD 120

Query: 121 NDIMV---IDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLL 176
            +++V   +D+L  +  +T+ +    R LD      +    + ++   L+ RN+P  +  
Sbjct: 121 GELIVLEGLDDLGLERPRTREMAALIRRLDLEGKRPLFVLAEPNKTLYLSVRNLPGADTE 180

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            V  +NVY +LR   +VL++ A+E  E+  
Sbjct: 181 TVDRLNVYQVLRHGHVVLAREAVERAEEVL 210


>gi|317501775|ref|ZP_07959961.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088704|ref|ZP_08337614.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896808|gb|EFV18893.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407227|gb|EGG86730.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 206

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N++G++   I +++ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK +  AL+ ALS +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALSSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D +   E KTK            N  ++     + N +++ARNI  +       
Sbjct: 121 NKFIVVDEMNFDEIKTKKF-QNVLNNLNVNKALVVLEDGNINAEISARNIAGVKTARTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+A+  +E+ +
Sbjct: 180 INVYDILKYNTVIATKAAVATIEEVY 205


>gi|256369656|ref|YP_003107166.1| 50S ribosomal protein L4 [Brucella microti CCM 4915]
 gi|255999818|gb|ACU48217.1| 50S ribosomal protein L4 [Brucella microti CCM 4915]
          Length = 206

 Score =  202 bits (513), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 119/206 (57%), Positives = 156/206 (75%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D   + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDADKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGTGRARH S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKAAVEALEERFK 206


>gi|55821904|ref|YP_140346.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMG 18311]
 gi|55823820|ref|YP_142261.1| 50S ribosomal protein L4 [Streptococcus thermophilus CNRZ1066]
 gi|116628597|ref|YP_821216.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMD-9]
 gi|228478067|ref|ZP_04062678.1| ribosomal protein L4/L1 family protein [Streptococcus salivarius
           SK126]
 gi|322515868|ref|ZP_08068810.1| 50S ribosomal protein L4 [Streptococcus vestibularis ATCC 49124]
 gi|81558868|sp|Q5LXR2|RL4_STRT1 RecName: Full=50S ribosomal protein L4
 gi|81560055|sp|Q5M2B4|RL4_STRT2 RecName: Full=50S ribosomal protein L4
 gi|122266809|sp|Q03IF2|RL4_STRTD RecName: Full=50S ribosomal protein L4
 gi|55737889|gb|AAV61531.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMG 18311]
 gi|55739805|gb|AAV63446.1| 50S ribosomal protein L4 [Streptococcus thermophilus CNRZ1066]
 gi|116101874|gb|ABJ67020.1| LSU ribosomal protein L4P [Streptococcus thermophilus LMD-9]
 gi|228250247|gb|EEK09500.1| ribosomal protein L4/L1 family protein [Streptococcus salivarius
           SK126]
 gi|312279258|gb|ADQ63915.1| 50S ribosomal protein L4 [Streptococcus thermophilus ND03]
 gi|322125655|gb|EFX96982.1| 50S ribosomal protein L4 [Streptococcus vestibularis ATCC 49124]
          Length = 207

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL + + +++   + ++  +L+ARN+ N+ +     
Sbjct: 121 DKFVAVEALSFAAPKTAEFANVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI ++E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEEVL 206


>gi|328958727|ref|YP_004376113.1| 50S ribosomal protein L4 [Carnobacterium sp. 17-4]
 gi|328675051|gb|AEB31097.1| 50S ribosomal protein L4 [Carnobacterium sp. 17-4]
          Length = 207

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 109/207 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G +++++ IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALYKQDGTQNGEVTLNDAIFGIEPNENVVFDAIIMQRASLRQGNHSVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K  S
Sbjct: 61  GRKPWAQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSTKVVS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L     KTK      + L++ +   I     +    L+ARN+P + ++    
Sbjct: 121 GDLIVVDALNFDAPKTKEFAQVLKNLNVDSKAFIVVENDNDFATLSARNLPGVKVVAFDN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           + V D++   KL+ +++A+  LE+  +
Sbjct: 181 VTVLDVVAHEKLIFTQTALTKLEEVLQ 207


>gi|322374046|ref|ZP_08048580.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C150]
 gi|321277012|gb|EFX54083.1| ribosomal protein L4/L1 family protein [Streptococcus sp. C150]
          Length = 207

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL + + +++   + ++  +L+ARN+ N+ +     
Sbjct: 121 DKFVAVEALSFAAPKTAEFAKVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI ++E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEEVL 206


>gi|298291439|ref|YP_003693378.1| ribosomal protein L4/L1e [Starkeya novella DSM 506]
 gi|296927950|gb|ADH88759.1| ribosomal protein L4/L1e [Starkeya novella DSM 506]
          Length = 206

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 108/206 (52%), Positives = 144/206 (69%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V+ LDG D G +++S++IF L+P+Q IL R++ WQ  R++ G  ++  RSEV  T 
Sbjct: 1   MELAVKKLDGTDAGSVTLSDEIFGLEPRQDILHRMVVWQLARRQAGTHQTLSRSEVNRTK 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH + S  QFRGG KAF PV       LPKKVR+LAL+HALS K    
Sbjct: 61  RKMYKQKGTGGARHGAASAPQFRGGAKAFAPVQHSHAIDLPKKVRALALKHALSSKAKDQ 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+V+D+    E KTK L  R   L LSN L++ G ++D NF LA+RN+ ++++LPVQGI
Sbjct: 121 QIVVLDDATLAEPKTKLLKERLAGLGLSNVLVVSGAEVDANFGLASRNVGHLDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K+A++ALE RFK
Sbjct: 181 NVYDILRRQTLVLTKAAVDALEARFK 206


>gi|326792606|ref|YP_004310427.1| ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427]
 gi|326543370|gb|ADZ85229.1| ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427]
          Length = 207

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N+ G   G + +++ IFA++ ++ ++ + +      +R G   +K R+EV   
Sbjct: 1   MAKVAVLNMTGAQVGEVELNDSIFAVEVKEHLVHQAVVAHLANRRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG AF P P      +  K R LAL+ AL+ +   
Sbjct: 61  GRKPWKQKGTGRARQGSIRAVQWVGGGVAFAPKPRNYSIKVNAKERRLALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  +V+D+L   E KTK +     AL L+ ALI+   +  +N  L+A+NI  I    V  
Sbjct: 121 SKFIVLDSLELAEIKTKAMANVLEALKLNKALIVTEGEASKNVMLSAKNIQGIKTAAVNN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+    V++K A+  +E+ +
Sbjct: 181 INVYDILKYDTFVVTKDALNKIEEVY 206


>gi|116490659|ref|YP_810203.1| 50S ribosomal protein L4P [Oenococcus oeni PSU-1]
 gi|290890075|ref|ZP_06553158.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429]
 gi|122277157|sp|Q04G84|RL4_OENOB RecName: Full=50S ribosomal protein L4
 gi|116091384|gb|ABJ56538.1| LSU ribosomal protein L4P [Oenococcus oeni PSU-1]
 gi|290480266|gb|EFD88907.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429]
          Length = 207

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG   G + +++ IFA++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVALYKQDGTQAGEVELADSIFAIEPNEAVVTDAVLMQRASLRQGTHSVKNRSTVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+RGG  + GP+P    + + +K   LAL+  LSDK  +
Sbjct: 61  GRKPWRQKGTGNARQGSIRAPQWRGGAISMGPIPRPYAYKINRKAYRLALKSVLSDKVSA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + ++ID L  ++  TK +      L+ +   ++     + N +L+ARN+PN+ +    G
Sbjct: 121 KNFVIIDELNFEKPSTKAIADSLNKLEATKKTLLVVDDANENAKLSARNLPNVQVTTASG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+++  K+V+ +SA++ +E+  
Sbjct: 181 VNVYDLVKAQKVVIVQSAVKQVEEVL 206


>gi|302382619|ref|YP_003818442.1| ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC 15264]
 gi|302193247|gb|ADL00819.1| ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC 15264]
          Length = 222

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 102/206 (49%), Positives = 136/206 (66%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++LS  NLDG+  G + +S+ IF +   +  +LAR + WQ  ++R G  K + R+E + T
Sbjct: 1   MKLSSINLDGKAAGDVELSDVIFGITDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH S+   QF GG +AFGP+       LPKKVR+LALRHALS K  +
Sbjct: 61  GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPIVRDHGFDLPKKVRALALRHALSSKVKT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L  KE KT  L   F  L  +  LII G ++D NF LA+RNIP I++LP  G
Sbjct: 121 GDLVVVDALTVKEAKTSALRETFGKLGWTRTLIIAGPEVDANFALASRNIPQIHVLPNAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR  KLVL+KSA+EA+E  +
Sbjct: 181 LNVYDILRADKLVLTKSAVEAIEATY 206


>gi|269215704|ref|ZP_06159558.1| ribosomal protein L4/L1 family protein [Slackia exigua ATCC 700122]
 gi|269131191|gb|EEZ62266.1| ribosomal protein L4/L1 family protein [Slackia exigua ATCC 700122]
          Length = 207

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ +++  G+      ++  +F ++P   ++ +V+R Q    R G   +K R +V+  
Sbjct: 1   MAKIEIKDASGKTVKEADLNAAVFGIEPNVPVMHQVVRSQQAALRQGTHSTKTRGQVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     + GGG  FGP P      + +K   LA R ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGTIRAPHWVGGGTVFGPHPRSYAFRVNRKEVKLAERSALSAKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++    +E  TK  V   +AL L     I     D    L+ RNIPN+ ++PV  
Sbjct: 121 GQLTVVEGFDFEEPSTKKAVAALKALGLDRRTTIVIGNDDVVTYLSFRNIPNVTVIPVAD 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +  +I+    LVL+ +A+  LE+  
Sbjct: 181 AHTLEIIDNKALVLTVAALNRLEEVL 206


>gi|126736643|ref|ZP_01752383.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2]
 gi|126713956|gb|EBA10827.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2]
          Length = 206

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 93/205 (45%), Positives = 131/205 (63%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++     LDG+  G + ++++IF L+P++ IL RV+RWQ  +   G     GRSEV+Y+ 
Sbjct: 1   MKADAIKLDGKKAGSVELNDEIFGLEPRKDILHRVVRWQRNKAMQGTHDVLGRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH S+    FRGGG   GP P    H LPKK R L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGSRGAPIFRGGGTYKGPTPRSHAHDLPKKFRKLGLKHALSAKVAAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D++  K+ KT  L  +  +L    ALIIDG +++ +F+ AA NI  IN+LP QG 
Sbjct: 121 ELVIVDDINVKDSKTSALAKQLGSLGWKRALIIDGSEVNADFKKAAANITTINVLPSQGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDILR   LVL+K+ +EALE R 
Sbjct: 181 NVYDILRSDTLVLTKAGVEALEARL 205


>gi|295109478|emb|CBL23431.1| LSU ribosomal protein L4P [Ruminococcus obeum A2-162]
          Length = 206

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N++G + G + +++ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK R  AL+ AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D+L   E KTK +         +   +I     D+N  L+ARNI ++    V  
Sbjct: 121 NKLVVVDSLALAEVKTKEMQKVL-TNLKAEKALIVTAGDDQNVVLSARNIADVQTATVNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+++ S +V++K A+ ++E+ +
Sbjct: 180 INVYDVMKHSTVVVTKDAVASIEEVY 205


>gi|225016284|ref|ZP_03705476.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum
           DSM 5476]
 gi|224950959|gb|EEG32168.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum
           DSM 5476]
          Length = 207

 Score =  201 bits (512), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N+ G++   I +S+ IF ++P + +L   +      +R G   +  R+EV   
Sbjct: 1   MPNVAVMNMAGKEVSKIDLSDAIFGIEPNKAVLHMAVVNYLANQRQGTQSTLTRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    ++L KKV+ LA++ ALS K   
Sbjct: 61  GKKPWRQKGTGHARQGSTRSPQWTHGGVALGPKPRDYSYSLNKKVKRLAMKSALSAKAVD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ND++V+D++   E KTK ++    AL      +I   ++D     +A NIP +    V  
Sbjct: 121 NDLIVVDSIALAEYKTKEVIKMLGALGADKKALIVLPEMDAKVIKSAANIPGVRTTQVNE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   KL++ ++A   +E+ +
Sbjct: 181 LNVYDILNHDKLIVVEAAAHKIEEVY 206


>gi|313904951|ref|ZP_07838322.1| ribosomal protein L4/L1e [Eubacterium cellulosolvens 6]
 gi|313470208|gb|EFR65539.1| ribosomal protein L4/L1e [Eubacterium cellulosolvens 6]
          Length = 206

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G + G + +S+ +F ++ ++ ++ + +  Q    R G  K+K RSEV   
Sbjct: 1   MANVSVYNMEGAEVGKMELSDAVFGVEIKENLVHQAVVLQLANNRQGTQKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + +K +  AL+  L+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNRKEKQAALKSVLTSKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L     KTK +     AL +  AL+I G   D    L+ARN+  +     + 
Sbjct: 121 NKFLVLDELKFDAPKTKEMKKVIDALKVEKALVIVGKDSDNAV-LSARNLEGVATASAET 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+ + ++ +KS++ A+E+ +
Sbjct: 180 INVYDLLKYNTVIATKSSVAAIEEVY 205


>gi|167767802|ref|ZP_02439855.1| hypothetical protein CLOSS21_02337 [Clostridium sp. SS2/1]
 gi|317497094|ref|ZP_07955421.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167710541|gb|EDS21120.1| hypothetical protein CLOSS21_02337 [Clostridium sp. SS2/1]
 gi|291558861|emb|CBL37661.1| LSU ribosomal protein L4P [butyrate-producing bacterium SSC/2]
 gi|316895639|gb|EFV17794.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 206

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++   + ++++IF ++  + ++   +  Q    R G  K+K RSEV   
Sbjct: 1   MATVSVLNMEGKEVEKLELNDNIFGVEINEHLVHLAVVSQLANNRQGTQKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F P P      L KK R +AL+ AL+ +  +
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPREYTKKLNKKERRIALKSALTSRVQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  +VID     E KTK +     ++    AL++ G + D    L+ARN+P +       
Sbjct: 121 DKFVVIDEFKFDEIKTKNVKAMLDSVGAKKALVVMGSKNDN-LVLSARNLPGVKTALTST 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+   +V+SK A+  +E+ +
Sbjct: 180 INVYDILKYDTVVVSKEAVANIEEVY 205


>gi|238922831|ref|YP_002936344.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656]
 gi|259491558|sp|C4ZBD5|RL4_EUBR3 RecName: Full=50S ribosomal protein L4
 gi|238874503|gb|ACR74210.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656]
 gi|291523733|emb|CBK89320.1| LSU ribosomal protein L4P [Eubacterium rectale DSM 17629]
 gi|291528801|emb|CBK94387.1| LSU ribosomal protein L4P [Eubacterium rectale M104/1]
          Length = 206

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N++G++   I +++ IF ++  + ++   +  Q   KR G  K+K RSEV   
Sbjct: 1   MANVAVYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK  V   +        ++    +D     +A NIP +       
Sbjct: 121 NKFVVVDELKLDEIKTKKFVEVLKN-LNVEKALVVLNDMDEKVIASAANIPTVKTTQTNE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV+D+L+   +V++K+A+  +E+ +
Sbjct: 180 LNVFDVLKYDTVVVTKAAVATIEEVY 205


>gi|163791667|ref|ZP_02186062.1| 50S ribosomal protein L4 [Carnobacterium sp. AT7]
 gi|159873046|gb|EDP67155.1| 50S ribosomal protein L4 [Carnobacterium sp. AT7]
          Length = 207

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 110/207 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G +++++ IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALYKQDGTQNGEVTLNDAIFGIEPNENVVFDAIIMQRASLRQGNHSVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K  S
Sbjct: 61  GRKPWAQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSTKVIS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L     KTK      + L++ +   I     +    L+ARN+P + ++    
Sbjct: 121 GDLIVVDALNFDAPKTKEFAQVLKNLNVDSKAFIVVENDNDFATLSARNLPGVKVVAFDN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           + V D++   KL+L+++A+  LE+  +
Sbjct: 181 VTVLDVVAHEKLILTQTALTKLEEVLQ 207


>gi|294630894|ref|ZP_06709454.1| 50S ribosomal protein L4/L1 [Streptomyces sp. e14]
 gi|292834227|gb|EFF92576.1| 50S ribosomal protein L4/L1 [Streptomyces sp. e14]
          Length = 218

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  GE  G + +  +IF ++     ++ +V+  Q    R G  K+K R EV  
Sbjct: 1   MSTVDILSPAGEKAGTVELPAEIFGVEKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            N I V+  +V  E  TK   T F  +     L++   + D    L+ARN+P +++L   
Sbjct: 121 HNRIHVVSGVVEGEISTKAAKTLFGKISERKNLLLVADRSDEAAWLSARNLPQVHILEPG 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V +K+A E+ 
Sbjct: 181 QLNTYDVLVSDDVVFTKAAFESF 203


>gi|86135763|ref|ZP_01054342.1| 50S ribosomal protein L4 [Roseobacter sp. MED193]
 gi|85826637|gb|EAQ46833.1| 50S ribosomal protein L4 [Roseobacter sp. MED193]
          Length = 205

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V NLDG   G I ++ D+F L+P+  IL RV+RWQ    + G  K K RSEV Y+ 
Sbjct: 1   MKLDVMNLDGSKAGDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GPV     H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI +  ++  KT  L  +   L    AL+IDG +++  F  A+RNI  +++LP  G 
Sbjct: 121 ELVVISDAAAE-GKTGALAKQVANLGWKRALVIDGAEVNEGFLKASRNIEGLDILPTMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGLEALEARLK 205


>gi|330470172|ref|YP_004407915.1| 50S ribosomal protein L4 [Verrucosispora maris AB-18-032]
 gi|328813143|gb|AEB47315.1| 50S ribosomal protein L4 [Verrucosispora maris AB-18-032]
          Length = 216

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N +G   G + +  DIF ++    ++ +V+  Q    R G  K+K R EV+  
Sbjct: 1   MTTVDVLNSEGTKTGSVELPGDIFDVQANVPLMHQVVVAQLAAARQGTHKTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             + V++  VS ++  TK  +     +  +  +++    +D    ++ RN P ++L+   
Sbjct: 121 GQVHVVEAFVSGEKPSTKAALAALTKVTEARRVLVVLSSVDELNWVSLRNEPRVHLIEAG 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V +K A++  
Sbjct: 181 QLNTYDVLVADDVVFTKEALDEF 203


>gi|320529797|ref|ZP_08030874.1| ribosomal protein L4/L1 family protein [Selenomonas artemidis
           F0399]
 gi|320137815|gb|EFW29720.1| ribosomal protein L4/L1 family protein [Selenomonas artemidis
           F0399]
          Length = 207

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 103/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V ++     G I +++D F ++   G+L + +  Q   +R+G   +K R  V   
Sbjct: 1   MANVAVYDMSHNKVGEIDLNDDFFNVEMNAGLLHQAVVLQLASQRLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LAL+ ALSDK  +
Sbjct: 61  GKKPWRQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYGFTMPRKQRRLALKCALSDKVRT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D +V+++L     KTK  V       +    +        N   +  NIP +  +   G
Sbjct: 121 GDFIVLESLDFDAPKTKQAVKLLNDFGVDAKSLFITADEAVNVARSTSNIPGVKAVTAAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+DIL   KL ++K A+  +E+ F
Sbjct: 181 INVFDILHHDKLFITKDAVTRIEEVF 206


>gi|259047554|ref|ZP_05737955.1| 50S ribosomal protein L4 [Granulicatella adiacens ATCC 49175]
 gi|259035745|gb|EEW37000.1| 50S ribosomal protein L4 [Granulicatella adiacens ATCC 49175]
          Length = 207

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 110/207 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG   G I ++ DIF ++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVTLFKQDGTTNGEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V++ L     KTK        L++   +++     +    L+ARNIPN+ ++    
Sbjct: 121 NKLVVVEALQFDAPKTKEFAQVLSNLNVDTKVLVVVESSNDFALLSARNIPNVTIVDETD 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           + V D++   KL+ +K+A+  +E+  +
Sbjct: 181 VTVLDVVNNDKLLFTKAALSKVEEGLQ 207


>gi|260468553|ref|ZP_05813720.1| ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075]
 gi|259028709|gb|EEW30018.1| ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075]
          Length = 206

 Score =  201 bits (511), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 122/206 (59%), Positives = 153/206 (74%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L +  L G+D G + +SE+IF L P++ IL RV+RWQ  +K+ G  K+KGR+E+A TG
Sbjct: 1   MDLKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPKKVR+L L+HALS K  S 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLKHALSAKAKSA 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I++ID L   E KTK L+  F  L LSNAL+I G +LD+NF+LAA NIPNI++LP+QGI
Sbjct: 121 SIIIIDELKLTEAKTKALIANFATLGLSNALVIGGAELDQNFKLAATNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206


>gi|13470552|ref|NP_102121.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099]
 gi|46577286|sp|Q98N56|RL4_RHILO RecName: Full=50S ribosomal protein L4
 gi|14021294|dbj|BAB47907.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099]
          Length = 206

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 122/206 (59%), Positives = 152/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L +  L G+D G + +SE+IF L P++ IL RV+RWQ  +K+ G  K+KGR+E+A TG
Sbjct: 1   MDLKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S    QFRGGGKA GPV     H LPK VR+L L+HALS K  S 
Sbjct: 61  AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKNVRALGLKHALSAKAKSA 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+VID L   E KTK L+  F  L LSNAL+I G +LD+NF+LAA NIPNI++LP+QGI
Sbjct: 121 SIIVIDELKLTEAKTKALIANFATLGLSNALVIGGAELDKNFKLAATNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRGTLVLSKAAVEALEERFK 206


>gi|257064319|ref|YP_003143991.1| ribosomal protein L4 [Slackia heliotrinireducens DSM 20476]
 gi|256791972|gb|ACV22642.1| ribosomal protein L4 [Slackia heliotrinireducens DSM 20476]
          Length = 207

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 102/207 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + ++N  GE    + +   +F ++P   ++  V+R Q    R G   +K R EV   
Sbjct: 1   MATIEIKNASGEKASEVELESAVFGIEPNVHVMHTVVRSQQAAMRQGTHDTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+ GGG  FGP P      + +K   LA+R ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNRKEVKLAMRSALSAKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +MV+++   ++  TK  V   +A  L     I     D N  L+ RNIP +N++ V  
Sbjct: 121 GQLMVVEDFKFEKPCTKEAVAFLKANGLDRRTTIVIPNDDVNAYLSFRNIPKVNVISVGE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            N  +++    LVL+ S ++ LE+  K
Sbjct: 181 ANTMELIDNKVLVLTASTLKRLEEVLK 207


>gi|254510767|ref|ZP_05122834.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11]
 gi|221534478|gb|EEE37466.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11]
          Length = 205

 Score =  201 bits (511), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I ++ D+F L+P+  IL RV+RWQ    + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGKAGDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FRGGG   GPV     H LPKK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDRNAPIFRGGGIYKGPVVRSHGHDLPKKFRKLGLRHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI+N  ++  KT  L  +   L    AL+IDG  ++  F  A++NI  +++LP  G 
Sbjct: 121 ELVVIENAEAE-GKTAALAKQVANLGWKRALVIDGATVNEGFLKASKNIEGLDILPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+A+EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAAVEALEARLK 205


>gi|227485524|ref|ZP_03915840.1| ribosomal protein L4 [Anaerococcus lactolyticus ATCC 51172]
 gi|227236523|gb|EEI86538.1| ribosomal protein L4 [Anaerococcus lactolyticus ATCC 51172]
          Length = 207

 Score =  201 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ GE+ G + ++E IFA K  +  +  V++ Q   KR G   +K R+EV   
Sbjct: 1   MPKVNILNIKGENVGELELNETIFATKVSEHAVYEVIKNQLANKRQGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P P    + L KK+R  AL   L+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYRLAKKLRRKALYSVLTSKLND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D+L  +  KTK       AL+      +   + D     + RNI  + +   + 
Sbjct: 121 NELIVVDSLALENAKTKEAKAALVALNADRKAYVVTAEKDELVYRSFRNIEGVEVAEARL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD++R  KLV++K AI  L++ F
Sbjct: 181 INVYDLVRHDKLVITKDAIAKLQEVF 206


>gi|116748991|ref|YP_845678.1| 50S ribosomal protein L4/L1e [Syntrophobacter fumaroxidans MPOB]
 gi|166199918|sp|A0LIJ1|RL4_SYNFM RecName: Full=50S ribosomal protein L4
 gi|116698055|gb|ABK17243.1| LSU ribosomal protein L4P [Syntrophobacter fumaroxidans MPOB]
          Length = 207

 Score =  201 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N + +  G + +S+ +FA+  +  +L  V+ +Q  ++R G  K+KGRS+VA  
Sbjct: 1   MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     +RGGG   GP P      +PKKVR LA++ ALS K   
Sbjct: 61  GKKPWRQKGTGRARAGTSRSPIWRGGGTIHGPQPRDYEMRIPKKVRRLAVKMALSQKLID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++ V+D L  ++ KT+         +  +  ++   Q D   Q +ARNIPN+ +L  +G
Sbjct: 121 RELTVLDQLQLEQIKTRDFAAILDRFE-LSKTLVVIAQPDEKLQKSARNIPNVKVLRTEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L    ++L++  I  +E+  
Sbjct: 180 LNVYDLLNHRSVLLTRETIGKIEETL 205


>gi|227871801|ref|ZP_03990205.1| ribosomal protein L4 [Oribacterium sinus F0268]
 gi|227842364|gb|EEJ52590.1| ribosomal protein L4 [Oribacterium sinus F0268]
          Length = 206

 Score =  201 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N+ G++ G + +++ IFA    + +L   +  Q   KR G  K+  R+EV+  
Sbjct: 1   MANVSVFNMQGKEVGKMDLNDAIFAAPVHEHLLHLAVVAQLANKRQGTQKALTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F P P      + KK +  AL+ ALS+    
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYTTGMNKKEKRAALKSALSNAVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D +   E KTK   +   A    N   +   Q D+N  L+ARNI N+    V  
Sbjct: 121 NKLIVLDEIRFDEIKTKNFQSMLDAFK-VNKAFVLLDQNDQNTVLSARNIQNVKTAQVNE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L+   ++ +K+A+  LE+ +
Sbjct: 180 LNVYDVLKYGTVLATKAALLKLEEVY 205


>gi|83858565|ref|ZP_00952087.1| 50S ribosomal protein L4 [Oceanicaulis alexandrii HTCC2633]
 gi|83853388|gb|EAP91240.1| 50S ribosomal protein L4 [Oceanicaulis alexandrii HTCC2633]
          Length = 212

 Score =  201 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 128/206 (62%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V  LD    G I +S+ +F ++  +  IL R ++WQ  R++ G  K+K R E+A T
Sbjct: 1   MKLDVVTLDAGKAGSIDLSDAVFGIEEVRADILQRAVKWQLSRRQAGTHKTKERGEIART 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K   QKG G ARH S++   F GGG A GP        LPKKVR+LAL+HALS K  +
Sbjct: 61  KKKFGRQKGGGGARHGSRNAPIFVGGGVAHGPRVRSHATELPKKVRALALKHALSTKAGA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++D     E KTK L  +F  L  SNALIIDG  LD NF  AARNIP I++LP QG
Sbjct: 121 KQLVILDEARLDEAKTKALTEKFSKLGWSNALIIDGETLDENFARAARNIPLIDVLPAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LR   LVL+K+A+E + +R 
Sbjct: 181 LNVYDVLRRDVLVLTKAAVEKINERL 206


>gi|229825320|ref|ZP_04451389.1| hypothetical protein GCWU000182_00674 [Abiotrophia defectiva ATCC
           49176]
 gi|229790692|gb|EEP26806.1| hypothetical protein GCWU000182_00674 [Abiotrophia defectiva ATCC
           49176]
          Length = 206

 Score =  201 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +++ IFA++ ++ ++ R +  Q    R G   +K R+ V   
Sbjct: 1   MANISVLNMEGKEVGSLELNDAIFAVEVKEHLMHRAVVLQLANNRQGTQSAKTRAAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+RGGG  F P P      + +K +  A+  AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRSPQWRGGGVVFAPQPRDYSFKMNRKEKQAAICSALTTKLNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D     E KTK        +  + ALI+ G + + N  L+ARN+ ++       
Sbjct: 121 NKLIVLDEFKLGEIKTKAAKKVLEDIKANKALIVLG-EKEENVILSARNLESVETTLTNS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL    LV++K A+  +E+ +
Sbjct: 180 INVYDILNHDSLVMTKDAVSKIEEVY 205


>gi|260905720|ref|ZP_05914042.1| LSU ribosomal protein L4P [Brevibacterium linens BL2]
          Length = 217

 Score =  201 bits (510), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +  G   G + +  +IF ++    ++ +V+  Q    R G  K+K RSEV   G 
Sbjct: 6   TVDVVDAAGAKTGSVELPAEIFGVQTNVPLIHQVVVAQLAAARQGTHKTKTRSEVRGGGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTG AR  S    Q+ GGG   GPVP       PKK+++ ALR ALSD+   + 
Sbjct: 66  KPYRQKGTGNARQGSIRAPQYNGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARLDQ 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + +V + +  +   TK        L      ++   + D   + + RN+P++++L    +
Sbjct: 126 VFVVKNLITGEAPSTKQAKLALAGLSDRKNTLVVLDRDDELTERSVRNLPHVHVLTSDQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V ++SA+E  
Sbjct: 186 NTYDVLIADDIVFTESALETF 206


>gi|269792793|ref|YP_003317697.1| 50S ribosomal protein L4/L1e [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100428|gb|ACZ19415.1| ribosomal protein L4/L1e [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 208

 Score =  201 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +   N +GE  G + +SE +F        + +V+       R+G   +K R EV+  
Sbjct: 1   MPRVKQVNFNGEVIGEVELSEAVFGAPVHVPAMHQVVVAHLANCRVGTHDTKDRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     + GGG A GP P      + KKVR LALR AL+ K   
Sbjct: 61  GRKPWRQKHTGRARQGSIRSPLWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V++    +  KTK +++    +      ++   + D N + +A NIP   +L V  
Sbjct: 121 DNMLVLERFELEAPKTKAMISFLERVQGGKKPLLVIHEPDHNVRKSASNIPGAMVLHVDS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   +++++  A+  +E+ F
Sbjct: 181 LNVYDILNHDRMIVTAEAVRKIEEVF 206


>gi|331091666|ref|ZP_08340500.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330403423|gb|EGG82982.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 206

 Score =  201 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G + G I +++ +F ++  + +L   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGNEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D +   E KTK            +  ++     +RN +L+ARNI  +       
Sbjct: 121 NKFIVLDEINFGEIKTKNFQNVLNN-LNVSKALVVLEDDNRNAELSARNIAAVKTARTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V +K+ +E +E+ +
Sbjct: 180 INVYDILKYNTVVTTKAVVEKIEEVY 205


>gi|312862390|ref|ZP_07722633.1| 50S ribosomal protein L4 [Streptococcus vestibularis F0396]
 gi|311102033|gb|EFQ60233.1| 50S ribosomal protein L4 [Streptococcus vestibularis F0396]
          Length = 207

 Score =  201 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ++ L     KT        AL + + +++   + ++  +L+ARN+ N+ +     
Sbjct: 121 DKFVAVEALSFVAPKTAEFANVLSALSIDSKVLVIVEEGNKFAELSARNLANVTVATPAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI ++E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISSIEEVL 206


>gi|120402317|ref|YP_952146.1| 50S ribosomal protein L4 [Mycobacterium vanbaalenii PYR-1]
 gi|119955135|gb|ABM12140.1| LSU ribosomal protein L4P [Mycobacterium vanbaalenii PYR-1]
          Length = 219

 Score =  201 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ VR   G+  G I +  ++F ++P   ++ +V+  Q   KR G   +K R EV+  G 
Sbjct: 7   KIPVRTPAGKTDGSIELPAELFDVEPNIALMHQVVNAQLAAKRQGTHSTKTRGEVSGGGK 66

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+   ALR ALSD+  ++ 
Sbjct: 67  KPYRQKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSERTPKKMIRAALRGALSDRARNDR 126

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  + + +  +   TK   +    L     +++   + D    L+ RN+P ++++    +
Sbjct: 127 IHAITEIVEGQTPSTKSAKSFLATLTDRRQVLVVIGRADEASALSVRNLPGVHVISPDQL 186

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+L+   +V S  A+ A
Sbjct: 187 NTYDVLKADDVVFSVEALNA 206


>gi|119383512|ref|YP_914568.1| 50S ribosomal protein L4 [Paracoccus denitrificans PD1222]
 gi|166234698|sp|A1B028|RL4_PARDP RecName: Full=50S ribosomal protein L4
 gi|119373279|gb|ABL68872.1| LSU ribosomal protein L4P [Paracoccus denitrificans PD1222]
          Length = 206

 Score =  201 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 127/206 (61%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LD    G I +S+DIF L+P+  +L RV+RWQ  + + G     G+S+V+Y+ 
Sbjct: 1   MKLDVITLDAGKAGDIDLSDDIFGLEPRADLLHRVVRWQRAKAQAGTHSVLGKSDVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH S+    FR GG   GP P      LPKKVR+L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V+D+L   E KT  +    +       L+IDG +++ NF  AARN+  +++LP  G 
Sbjct: 121 ELVVVDSLNIAEAKTAAVAKAVKENGWKRVLVIDGAEVNENFARAARNLEGVDVLPSMGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+++ +EALE R K
Sbjct: 181 NVYDILRRDTLVLTRAGVEALEARLK 206


>gi|254780260|ref|YP_003064673.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039937|gb|ACT56733.1| 50S ribosomal protein L4 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 207

 Score =  201 bits (510), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT
Sbjct: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS
Sbjct: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG
Sbjct: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           INVYDILRCSKLVLSKSAIEALEDRFK
Sbjct: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207


>gi|212697254|ref|ZP_03305382.1| hypothetical protein ANHYDRO_01822 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675703|gb|EEB35310.1| hypothetical protein ANHYDRO_01822 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 207

 Score =  200 bits (509), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 104/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N+ GE+ G I ++E +FA    +  +   ++ Q   KR G   +K RSEV   
Sbjct: 1   MPKVEVLNIKGENVGEIELNETLFAADIAETAVYDTVKNQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P P    + +PKK++  AL   L+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPKKMKRKALYSVLTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L     KTK        +       +   + D     + RNI   ++     
Sbjct: 121 NELVVLDELKLDSYKTKEANEILTNIKADKKAYVVIAENDDKVYRSFRNIEGCDVEKANL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+LR +KLV++K AI  LE+ F
Sbjct: 181 INVYDLLRHNKLVITKEAIAKLEEVF 206


>gi|255262953|ref|ZP_05342295.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62]
 gi|255105288|gb|EET47962.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62]
          Length = 206

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 125/206 (60%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++     +DG   G + + E IF L+P+  IL RV+RWQ    + G  K K RSEV Y+ 
Sbjct: 1   MKADAIKMDGGKAGSVDLDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GP      H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTVRSHGHELTKKFRKLGLRHALSAKATAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++ID    K+ KT  L  + + L    ALIIDG +++ NF +AARNI  +++LP  G 
Sbjct: 121 ELVIIDVADLKDAKTSALAKQVKDLGWKRALIIDGAEVNENFAVAARNIDTVDILPSMGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 181 NVYDILKSDTLVLTKAGVEALEARLK 206


>gi|89893218|ref|YP_516705.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51]
 gi|122483925|sp|Q250N1|RL4_DESHY RecName: Full=50S ribosomal protein L4
 gi|89332666|dbj|BAE82261.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51]
          Length = 207

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N+ G   G + + E +F ++P   ++ + +  Q   +R G   +  R EV   
Sbjct: 1   MPKVQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P     +LPKKVR LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+++L   E KT+ +V   +AL++S   +I   +     + +ARNI  I    V+G
Sbjct: 121 QKLIVLEDLSLNEAKTREMVKVLQALNVSKKALIVTDEFMETIERSARNIAGIKTTAVEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+YD+L    +V++K+A+   E+  
Sbjct: 181 MNIYDLLNSDVIVMTKAAVTKTEEVL 206


>gi|325848833|ref|ZP_08170343.1| 50S ribosomal protein L4 [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480477|gb|EGC83539.1| 50S ribosomal protein L4 [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 207

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 104/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N+ GE+ G I ++E +FA    +  +   ++ Q   KR G   +K RSEV   
Sbjct: 1   MPKVEVLNIKGENVGEIELNETLFAADIAETAVYDTVKNQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  F P P    + +P+K++  AL   L+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSIRAPHYTGGGIVFAPKPRDYSYKIPRKMKRKALYSVLTSKVND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L     KTK        +       +   + D     + RNI   N+     
Sbjct: 121 NELVVLDELKLDSYKTKEANEILTNIKADKKAYVVIAENDDKVYRSFRNIEGCNVEKANL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+LR +KLV++K AI  LE+ F
Sbjct: 181 INVYDLLRHNKLVITKEAIAKLEEVF 206


>gi|254460398|ref|ZP_05073814.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium HTCC2083]
 gi|206676987|gb|EDZ41474.1| ribosomal protein L4/L1 family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 205

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + E +F L+P+  IL RV+RWQ    + G  K K RSEV Y+ 
Sbjct: 1   MKLDVIKLDGGKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GPV     H LPKKVR+L L+ ALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGIYKGPVVRSHGHDLPKKVRALGLKLALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VID   +   KT  L  +  A+    ALIIDG  ++ +F  AARNI  +++LP  G 
Sbjct: 121 ELVVIDE-AAGAMKTSALAKQVSAMGWKRALIIDGASVNEDFMQAARNIEGLDILPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ IEALE R K
Sbjct: 180 NVYDILKRDTLVITKAGIEALEARLK 205


>gi|328953157|ref|YP_004370491.1| ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109]
 gi|328453481|gb|AEB09310.1| ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109]
          Length = 207

 Score =  200 bits (509), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V ++D    G +S+ +DIF +  Q  IL  V+  Q   +R G + +KGRSEV   
Sbjct: 1   MPVIDVYDIDRNKVGEVSLRDDIFNIPVQGHILHEVVTMQLACRRAGTASTKGRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P    +  PKKVR LAL+ ALS K   
Sbjct: 61  GHKPWRQKGTGRARVGSIRSPLWRGGGVVFGPKPRSYAYKPPKKVRRLALKMALSSKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++D       KTK  +       ++ AL I     ++   L++RN+P + ++  +G
Sbjct: 121 GQLLILDQYPYDSPKTKDFIRVLEKFQINKALFITADD-NQVLTLSSRNVPYVQIMRTEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDILR   LV+ + AI  +E+RF
Sbjct: 180 INVYDILRYDHLVVFQPAISQIEERF 205


>gi|116334268|ref|YP_795795.1| 50S ribosomal protein L4 [Lactobacillus brevis ATCC 367]
 gi|122269050|sp|Q03PV8|RL4_LACBA RecName: Full=50S ribosomal protein L4
 gi|116099615|gb|ABJ64764.1| LSU ribosomal protein L4P [Lactobacillus brevis ATCC 367]
          Length = 207

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G + ++ DIF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MTSVALYKQDGSQNGNVELNADIFGVEPNENVVFDTILMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LPKKV  LAL+  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYRLPKKVSRLALKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              +V+D L     KTK        L+++   ++     +    LAARN+ N+ ++P +G
Sbjct: 121 ESFVVVDGLAFDAPKTKEFAAVLAGLNVTTKTLVVLEDDNVTAALAARNLTNVKVIPAKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV DI    KLV+++ A+  +E+  
Sbjct: 181 LNVLDIADADKLVITQPALSQVEEVL 206


>gi|219666491|ref|YP_002456926.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DCB-2]
 gi|254803731|sp|B8G1W7|RL4_DESHD RecName: Full=50S ribosomal protein L4
 gi|219536751|gb|ACL18490.1| ribosomal protein L4/L1e [Desulfitobacterium hafniense DCB-2]
          Length = 207

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N+ G   G + + E +F ++P   ++ + +  Q   +R G   +  R EV   
Sbjct: 1   MPKVQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P     +LPKKVR LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+++L   E KT+ +V   +AL++    +I   +       +ARNI  I    V+G
Sbjct: 121 QKLIVLEDLSLNEAKTREMVKVLQALNVGKKALIVTDEFMETIDRSARNIAGIKTTAVEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+YD+L    +V++K+A+   E+  
Sbjct: 181 MNIYDLLNSDVIVMTKAAVTKTEEVL 206


>gi|290968243|ref|ZP_06559786.1| ribosomal protein L4/L1 family protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781725|gb|EFD94310.1| ribosomal protein L4/L1 family protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 207

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S  N+ G   G I +++ +F ++  + ++ + L  Q   +R+G   +K R  V   
Sbjct: 1   MPKVSTYNITGAKTGEIELNDSVFGVEVNEAVMRQALLRQLANERLGTHSTKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  +GP P      +P+K R LA++ ALSDK  +
Sbjct: 61  GRKPWKQKGTGRARVGSSRSPLWVGGGTVWGPHPRSYAQKMPRKARRLAVKSALSDKVNT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++ V+D +     KTK +V   +    +   ++     D      ARNI  +  +  +G
Sbjct: 121 NELFVLDEIKLAAAKTKEVVALIKNFQFTGEKVLFVTDNDEIVIRCARNIEGVKAISTEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N++D+L  +KL ++KSA+  +E+  
Sbjct: 181 VNIFDLLHYTKLFVTKSAVAKIEEVL 206


>gi|320352918|ref|YP_004194257.1| 50S ribosomal protein L4P [Desulfobulbus propionicus DSM 2032]
 gi|320121420|gb|ADW16966.1| LSU ribosomal protein L4P [Desulfobulbus propionicus DSM 2032]
          Length = 207

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    + N   E  G I ++E +F L+   GIL  V+  Q   +R G + +K R EV+  
Sbjct: 1   MATCDIYNTRAEKVGEIDLNESLFNLEVNTGILHEVVCMQRANRRSGNACTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S++   +RGGG  FGP P    +++PKKV+ LAL+ A+S +   
Sbjct: 61  GAKPWRQKGTGRARSGSRTSPVWRGGGTVFGPKPRDYSYSMPKKVKRLALKMAMSARCQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I+++D       KTK  +         N  ++   + + N  L+ARN     +LPV G
Sbjct: 121 GNIVIVDQFDLPAVKTKEFLKVMTNFQFEN-CLVVTAESEDNLGLSARNAVGFKVLPVAG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+ SKL++ +S++  +E+R 
Sbjct: 180 LNVYDILKHSKLMILQSSLAKIEERL 205


>gi|240145877|ref|ZP_04744478.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis
           L1-82]
 gi|257202026|gb|EEV00311.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis
           L1-82]
 gi|291535431|emb|CBL08543.1| LSU ribosomal protein L4P [Roseburia intestinalis M50/1]
          Length = 206

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N++G++ G + +++ +F ++  + ++   +  Q    R G  K+K RSEV   
Sbjct: 1   MANVAVYNMEGKEVGSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG  F PVP      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  +V+D L     KTK  V     L      ++    +D N   +A N+P +       
Sbjct: 121 SKFIVVDELKLDSIKTKNFVQVLNNLK-VEKALVVLNDMDTNVIKSASNVPTVKTAQTNE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV+D+L+   +V++K A++ +E+ +
Sbjct: 180 LNVFDVLKYDTVVVTKDAVKTIEEVY 205


>gi|289523368|ref|ZP_06440222.1| ribosomal protein L4/L1 family protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503060|gb|EFD24224.1| ribosomal protein L4/L1 family protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 208

 Score =  200 bits (509), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 105/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V  +DG+  G +++++D+FA +     + +V+      +R G   +K R EV   
Sbjct: 1   MPTVDVIGIDGQKVGEVALADDVFAARIHVPAMHQVVVAYLAAQRQGTHSTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRARH S     +  GG   GP P      + KKV+ LA++ ALS K   
Sbjct: 61  GRKPWRQKHTGRARHGSIRSPLWIKGGVVHGPKPRSYDQKVNKKVKQLAIKSALSLKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N +++++ + +   KTK +             +I   +   +  +AARNIP   +L V  
Sbjct: 121 NKLILVEGIETMSPKTKDMCAFLANAQAQAKPLIVIHESLPSIYMAARNIPGTRVLHVDS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVY+IL    L+L+K A + LE+ +
Sbjct: 181 INVYEILNHEHLILTKGAAQRLEEVY 206


>gi|28377833|ref|NP_784725.1| 50S ribosomal protein L4 [Lactobacillus plantarum WCFS1]
 gi|254556018|ref|YP_003062435.1| 50S ribosomal protein L4 [Lactobacillus plantarum JDM1]
 gi|300767822|ref|ZP_07077732.1| ribosomal protein L4/L1 family protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180012|ref|YP_003924140.1| 50S ribosomal protein L4 [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|46577245|sp|Q88XY5|RL4_LACPL RecName: Full=50S ribosomal protein L4
 gi|28270666|emb|CAD63572.1| ribosomal protein L4 [Lactobacillus plantarum WCFS1]
 gi|254044945|gb|ACT61738.1| 50S ribosomal protein L4 [Lactobacillus plantarum JDM1]
 gi|300494807|gb|EFK29965.1| ribosomal protein L4/L1 family protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045503|gb|ADN98046.1| 50S ribosomal protein L4 [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 207

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G +++++ +F ++P + ++   +  Q    R G    K RS     
Sbjct: 1   MTSVALFKQDGTQNGDVTLNDAVFGVEPNENVVFDAILMQRASMRQGTHAVKNRSARRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+R GG  FGP P    + LPKKV  LAL+  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRKGGIVFGPTPRSYSYKLPKKVMRLALKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++ +D+L     KTK  V     L++    ++   + +    LA RN+PN+ +L  +G
Sbjct: 121 NSLVAVDSLAFDAPKTKDFVNVLNNLNVDTKTLVLVEEDNEKAALAGRNLPNVKILKAKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D+    KLV+++ A++ LE+  
Sbjct: 181 VNVLDVANSDKLVVTQKALDQLEEAL 206


>gi|197303813|ref|ZP_03168849.1| hypothetical protein RUMLAC_02552 [Ruminococcus lactaris ATCC
           29176]
 gi|197297106|gb|EDY31670.1| hypothetical protein RUMLAC_02552 [Ruminococcus lactaris ATCC
           29176]
          Length = 206

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N++G++   I +++ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D +   E KTK   T        N  ++   + D+N +++A+NIP++    V  
Sbjct: 121 NKFIVVDEMKFDEIKTKKFQTVLNN-LNVNKALVVLEEGDKNAEISAKNIPDVKTARVNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+ + A+E+ +
Sbjct: 180 INVYDILKYNTVIATKAVVAAIEEVY 205


>gi|302543360|ref|ZP_07295702.1| ribosomal protein L4/L1 family protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460978|gb|EFL24071.1| ribosomal protein L4/L1 family protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 217

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 103/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  +    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPTEIFDAQVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V+  +V  +  TK        +     +++   + D    L+ARN+P +++L    
Sbjct: 121 SRVHVVTGVVEGDISTKAAKVLLGKISQRKHVLLVAERSDEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +K+A+E+ 
Sbjct: 181 LNTYDVLVSDDVVFTKAALESF 202


>gi|309812335|ref|ZP_07706090.1| 50S ribosomal protein L4 [Dermacoccus sp. Ellin185]
 gi|308433640|gb|EFP57517.1| 50S ribosomal protein L4 [Dermacoccus sp. Ellin185]
          Length = 214

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + + +G+  G + +  DIF +     ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MTTVDILSPEGKTSGSVELPADIFDVATNVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GRKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARF 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I V++++V+ +   TK        L     L++   ++D   +L+ RN+PN+++L   
Sbjct: 121 ERIHVLESVVAGEAPSTKAAAKFLGTLSDRKNLLVVIDRMDSVSELSVRNLPNVHVLWSD 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +  +K+A +A 
Sbjct: 181 QLNTYDVLCADDIAFTKAAFDAF 203


>gi|325678593|ref|ZP_08158203.1| 50S ribosomal protein L4 [Ruminococcus albus 8]
 gi|324109643|gb|EGC03849.1| 50S ribosomal protein L4 [Ruminococcus albus 8]
          Length = 207

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V ++ G       +++ IF ++P + ++  ++      +R G   +  R+EV   
Sbjct: 1   MSQIAVVDMTGNKVADTELNDAIFGIEPNKALMHAMVVNYLANQRQGTQSTLTRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    ++L KK R LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWVHGGIALGPKPRDYSYSLNKKERRLAMKSALSTKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V++ + +KE KTK +V   +A+      +I    +D     +A NIP +    V  
Sbjct: 121 SNLIVVNEIETKEYKTKVMVDMLKAIGAEGKALIVTADVDAKVVKSAANIPGVKTATVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   K V+S  A++ +E+ +
Sbjct: 181 LNVYDILNYDKFVVSSDAVKKIEEVY 206


>gi|291460719|ref|ZP_06600109.1| ribosomal protein L4/L1 family protein [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416678|gb|EFE90397.1| ribosomal protein L4/L1 family protein [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 206

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV ++ G++ G + +++ +FA    + +L   +  Q   +R G  K+  R+EV+  
Sbjct: 1   MAIVSVFDMQGKEVGKMELNDAVFAAPINEHLLHLAVVAQLANRRQGTKKALTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F P P      L KK +  AL+ ALS+    
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYRKDLNKKEKRAALKAALSNAVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++   E KTK       AL       +   Q D    L+ARNI ++    V  
Sbjct: 121 QKLVVVDSIHFDEIKTKKFQAMLDALK-LKKAFVLLDQNDEKTILSARNIEDVKTAQVNE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+++   ++ +K+A+E LE+ +
Sbjct: 180 INVYDVMKYGTVLATKAALEKLEEVY 205


>gi|118470088|ref|YP_885820.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155]
 gi|166234688|sp|A0QSD2|RL4_MYCS2 RecName: Full=50S ribosomal protein L4
 gi|118171375|gb|ABK72271.1| ribosomal protein L4/L1 family protein [Mycobacterium smegmatis
           str. MC2 155]
          Length = 215

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V+   G+  G + +  ++F ++P   ++ +V+  Q   KR G   +K R EV+  G 
Sbjct: 4   KVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGK 63

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  ++ 
Sbjct: 64  KPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDR 123

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  +   TK   T    L  +  +++   + D     + RN+P ++++    +
Sbjct: 124 IHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQL 183

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+L    +V S  A+ A
Sbjct: 184 NTYDVLNADDVVFSVEALNA 203


>gi|225376410|ref|ZP_03753631.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM
           16841]
 gi|225211786|gb|EEG94140.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM
           16841]
          Length = 206

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N++G++ G + +++ IF ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVAVYNMEGKEVGSLELNDAIFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG  F PVP      L KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  +V+D L   E KTK  V     L      ++     D N   +A N+  +       
Sbjct: 121 SKFVVVDELKLDEIKTKKFVEVMNNLK-VEKALVVLNDNDVNVIKSASNLATVKTAQTNE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+   +V++K A++ +E+ +
Sbjct: 180 INVYDILKYDTVVVTKDAVKTIEEVY 205


>gi|311029050|ref|ZP_07707140.1| 50S ribosomal protein L4 [Bacillus sp. m3-13]
          Length = 207

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 121/206 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G + G + +++ +F ++P   +L   +  Q    R G +K KGRSEVA  
Sbjct: 1   MPKVALYNQAGANVGEVELADAVFGIEPNNSVLFDAIVMQRASLRQGTAKVKGRSEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V++ L     KTK + +  + L+++   +I     D N  L+ARNIP + ++ V G
Sbjct: 121 NELLVLEGLAFDAPKTKEMTSVLKGLEINRKALIVTADADENVALSARNIPGVTVVTVTG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++   K++ +K A++ LE+  
Sbjct: 181 VNVLDVVNHDKVIFTKDAVQKLEEVL 206


>gi|291544461|emb|CBL17570.1| LSU ribosomal protein L4P [Ruminococcus sp. 18P13]
          Length = 207

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV ++ G       +S+ +F + P + ++  ++      +R G   +  R+EV+  
Sbjct: 1   MAKVSVFDMTGNQVSETELSDAVFGITPNEAVMHAMVVNYLANQRQGTQSTLTRTEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    +AL KKVR LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWYHGGVALGPKPRDYRYALNKKVRRLAMKSALSSKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L     KTK +V   +AL++    +I   + D+    +A NIP +    V  
Sbjct: 121 NNIIVLDALTVDSYKTKTIVAMLKALNVEGKALIVTAEADKKVIKSAANIPGVKTAAVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   K ++ K+A+  +E+ +
Sbjct: 181 LNVYDILNYDKFIVVKNAVGQIEEVY 206


>gi|291547983|emb|CBL21091.1| LSU ribosomal protein L4P [Ruminococcus sp. SR1/5]
          Length = 206

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N++G + G + +++ +F ++  + ++   +  Q    R G  K+K RSEV   
Sbjct: 1   MANVTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK R  AL+ AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D+L   E KTK +         +   ++     D+N  L+ARNI ++       
Sbjct: 121 NKLVVVDSLALAEVKTKEMQKVL-TNLKAEKALVITADNDQNVVLSARNIADVETATPAT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN YD+++ + +V++K A+ ++E+ +
Sbjct: 180 INTYDVMKHNTVVVTKDAVASIEEVY 205


>gi|167759861|ref|ZP_02431988.1| hypothetical protein CLOSCI_02224 [Clostridium scindens ATCC 35704]
 gi|167662480|gb|EDS06610.1| hypothetical protein CLOSCI_02224 [Clostridium scindens ATCC 35704]
          Length = 206

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +S+ +F ++  + +L   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVGTMDLSDAVFGVEINEHLLHMAVVNQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK +  AL+ AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTAKVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              +V+D +   E KTK      + LD  +  ++     + N +++ARNI +I       
Sbjct: 121 KKFIVVDEIKLDEIKTKNFANILKNLD-VSKALVVLEDGNTNAEVSARNIADIKTARSNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+A+  +E+ +
Sbjct: 180 INVYDILKYNTVIATKAAVANIEEVY 205


>gi|320094579|ref|ZP_08026345.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978494|gb|EFW10071.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 216

 Score =  200 bits (508), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 1/200 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V +L+G+    + +  +IF +     ++ +V+  Q    R G   +K R +V+  G K
Sbjct: 9   VDVLDLEGKKAATVDLPAEIFDVPTNIPLMHQVVVAQLAAARQGTHSTKTRGQVSGGGRK 68

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTG AR  S    QF GGG   GP P       PKK++  ALR ALSD+  ++ I
Sbjct: 69  PFRQKGTGNARQGSIRAPQFTGGGVVHGPKPRDYEQRTPKKMKRGALRSALSDRARADRI 128

Query: 124 MVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
            V+       +  TK  +   RA+      ++   + D+   L+ RN+P +++L V  +N
Sbjct: 129 HVVTALFEGDKPSTKAALASLRAIVDDRQALVVLERGDQLTALSLRNVPEVHVLWVDQLN 188

Query: 183 VYDILRCSKLVLSKSAIEAL 202
            YD+L    +V +++A+E+ 
Sbjct: 189 TYDVLDADDIVFTQAALESF 208


>gi|323706451|ref|ZP_08118012.1| ribosomal protein L4/L1e [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534171|gb|EGB23961.1| ribosomal protein L4/L1e [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 206

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N++ E  G I +S+++F ++    ++   +      +R G   +K R EV   
Sbjct: 1   MPKVAVYNINAEQIGEIELSDNVFGVEVNVPVMHEAVLNYLANQRQGTHSTKRRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  FGP P    + +PKKV+ LAL+ ALS K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWVKGGVVFGPKPRDYSYNIPKKVKRLALKSALSSKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+VID++   E KTK +    +  D+ NA +I       N  L++RNIPN+  +    
Sbjct: 121 NEIIVIDDINIDEPKTKKIAEMLKKFDVKNA-LIVIPDGKENVILSSRNIPNVKAVFANS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L+  + +++K A+  +E+ +
Sbjct: 180 LNTYDVLKYDRFIITKDAVNKVEEVY 205


>gi|317123096|ref|YP_004103099.1| 50S ribosomal protein L4P [Thermaerobacter marianensis DSM 12885]
 gi|315593076|gb|ADU52372.1| LSU ribosomal protein L4P [Thermaerobacter marianensis DSM 12885]
          Length = 212

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 4/210 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N  GE  G I +SE +F    ++ ++ + +      +R G + +K R  V+  
Sbjct: 1   MPRVAVYNTRGERVGEIELSETVFGAPVREALMHQAVVRYLANQRRGTAATKTRGMVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  FGP P     ALPKK R  ALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAPHWRKGGIVFGPQPRDYSQALPKKARRAALRSALSAKVAD 120

Query: 121 NDIMVIDNLV---SKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
            +++V++ L     +  +T+ +     R        +    + D    L+ARN+P ++  
Sbjct: 121 GELIVLEGLKELGLERPRTREVAALIERLDLDGKRPLFVLAEPDPTLYLSARNLPGVDTE 180

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            V  +NVY +LR   +VL++ A++ +E+  
Sbjct: 181 TVDRLNVYKVLRHGHVVLAREAVDRVEEVL 210


>gi|58336631|ref|YP_193216.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM]
 gi|227903188|ref|ZP_04020993.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796]
 gi|75433039|sp|Q5FM89|RL4_LACAC RecName: Full=50S ribosomal protein L4
 gi|58253948|gb|AAV42185.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM]
 gi|227868993|gb|EEJ76414.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796]
          Length = 205

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P   ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANLKVMDQNGKDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ND++V+D L     KTK LV+   +L+    ++I     D N QL+ARN+  + ++PV G
Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNSLNADGKVLIVSD--DNNVQLSARNLAKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204


>gi|257866530|ref|ZP_05646183.1| ribosomal protein L4 [Enterococcus casseliflavus EC30]
 gi|257872955|ref|ZP_05652608.1| ribosomal protein L4 [Enterococcus casseliflavus EC10]
 gi|257876134|ref|ZP_05655787.1| ribosomal protein L4 [Enterococcus casseliflavus EC20]
 gi|325567375|ref|ZP_08144042.1| 50S ribosomal protein L4 [Enterococcus casseliflavus ATCC 12755]
 gi|257800488|gb|EEV29516.1| ribosomal protein L4 [Enterococcus casseliflavus EC30]
 gi|257807119|gb|EEV35941.1| ribosomal protein L4 [Enterococcus casseliflavus EC10]
 gi|257810300|gb|EEV39120.1| ribosomal protein L4 [Enterococcus casseliflavus EC20]
 gi|325158808|gb|EGC70954.1| 50S ribosomal protein L4 [Enterococcus casseliflavus ATCC 12755]
          Length = 207

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS+K  S
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++ ++ L     KTK        L + + +++     +    L+ARN+P ++++    
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLTIDSKVLVVLESENDFAALSARNLPKVSVVTADN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+V DI+   K++++++A+  +E+  
Sbjct: 181 ISVLDIVSNDKMLVTQTALTQIEEVL 206


>gi|229821622|ref|YP_002883148.1| ribosomal protein L4/L1e [Beutenbergia cavernae DSM 12333]
 gi|229567535|gb|ACQ81386.1| ribosomal protein L4/L1e [Beutenbergia cavernae DSM 12333]
          Length = 221

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 101/200 (50%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +  G+  G   +  D+F ++    ++ +V+  Q    R G  K+K R EV   G 
Sbjct: 8   TVDVIDAKGKKSGTADLPADVFDVQTNVPLIHQVVVAQLAAARQGTHKTKTRGEVRGGGK 67

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  ++ 
Sbjct: 68  KPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARADR 127

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           + V+   V+    TK  +     +  +  +++   + D    L+ RN+P ++L+    +N
Sbjct: 128 VHVVSGFVADAPSTKAALAVLGQVTEAERVLVVLERTDTTAWLSLRNVPAVHLIHPDQLN 187

Query: 183 VYDILRCSKLVLSKSAIEAL 202
            YD+L    +V ++ A+E  
Sbjct: 188 TYDVLVSDDVVFTRGALEQF 207


>gi|238061120|ref|ZP_04605829.1| 50S ribosomal protein L4 rplD [Micromonospora sp. ATCC 39149]
 gi|57547708|gb|AAW52547.1| RplD [Micromonospora sp. ATCC 39149]
 gi|237882931|gb|EEP71759.1| 50S ribosomal protein L4 rplD [Micromonospora sp. ATCC 39149]
          Length = 216

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N++G   G + +   IF ++    ++ +V+  Q    R G  K+K R EVA  
Sbjct: 1   MTTVDVLNVEGAKSGSVELPAGIFDVQANIALMHQVVVAQLAAARQGTHKAKTRGEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             + V++  VS ++  TK  +     L  +  +++     D    ++ RN P ++L+   
Sbjct: 121 GQVHVVEAFVSGEKPSTKAALATLAKLTEAPRVLVVLSSSDELNWVSLRNEPRVHLIEAG 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V +K A++  
Sbjct: 181 QLNTYDVLVADDVVFTKDALDEF 203


>gi|325261495|ref|ZP_08128233.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5]
 gi|324032949|gb|EGB94226.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5]
          Length = 206

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +++ +F +   + ++   +  Q    R G  K+K R+EV+  
Sbjct: 1   MANVSVYNIEGKEVGTIDLNDAVFGVDVNEHLVHMAVVSQLANNRQGTQKAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +VID L   E KTK            N  ++     ++N +++ARNI  +       
Sbjct: 121 NKFIVIDELNFDEIKTKKFQEVLNN-LNVNKALVVLEDGNKNVEISARNIKEVKTAHTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV+DIL+ + ++++K+A+  +E+ +
Sbjct: 180 INVFDILKYNTVIVTKAAVATIEEVY 205


>gi|307328031|ref|ZP_07607212.1| ribosomal protein L4/L1e [Streptomyces violaceusniger Tu 4113]
 gi|306886336|gb|EFN17341.1| ribosomal protein L4/L1e [Streptomyces violaceusniger Tu 4113]
          Length = 217

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/202 (33%), Positives = 102/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  +    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPAEIFDTQVSIPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+  +V  +  TK   T    +     L++   + D    L+ARN+P +++L    
Sbjct: 121 ERIHVVTGVVDGDISTKAAKTLLGKISERKNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +K+A E+ 
Sbjct: 181 LNTYDVLVSDDVVFTKAAFESF 202


>gi|154507863|ref|ZP_02043505.1| hypothetical protein ACTODO_00345 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797497|gb|EDN79917.1| hypothetical protein ACTODO_00345 [Actinomyces odontolyticus ATCC
           17982]
          Length = 216

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 98/201 (48%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +L G+  G + +   IF +     ++ +V+  Q    R G   +K R EVA  G 
Sbjct: 8   NVDVIDLKGKKAGSVVLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRGEVAGGGK 67

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTG AR  S     F GGG   GP P       PKK++  ALR ALSD+  ++ 
Sbjct: 68  KPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALSDRARADR 127

Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+       +  TK  +   RA+      ++   + +    L+ RN+P +++L    +
Sbjct: 128 IHVVTALFEGDKPSTKAALAALRAIVEDRQALVVLERGNELTALSLRNVPEVHVLWADQL 187

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V +++A+E+ 
Sbjct: 188 NTYDVLDADDIVFTQAALESF 208


>gi|268609592|ref|ZP_06143319.1| 50S ribosomal protein L4 [Ruminococcus flavefaciens FD-1]
          Length = 207

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV ++ G+      +++++F + P +G++   +      +R G   +  R+EV+  
Sbjct: 1   MSTISVFDMTGKQVSETELNDEVFGITPNEGVMHAAVVNYLANQRQGTQSTLTRTEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    +AL KKV+ LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWVHGGIALGPKPRDYRYALNKKVKRLAMKSALSTKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V+D L  +  KTK +V   +AL +    +I   + D     +A NIP +    V  
Sbjct: 121 NNMIVLDALTLESYKTKPVVEMLKALGVEGKALIVTAEADAKVIKSAANIPGVKTAAVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   K ++ K+A+  +E+ +
Sbjct: 181 LNVYDILNYDKFIVVKNAVGKIEEVY 206


>gi|266620262|ref|ZP_06113197.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM
           13479]
 gi|288868165|gb|EFD00464.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM
           13479]
          Length = 206

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G + G + +++ +F +   + ++   +  Q   KR G  K+K R+EV+  
Sbjct: 1   MANVSVYNMEGNEVGTLELNDAVFGVNVNEHLVHLAVVSQLANKRQGTQKAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK R LAL+ AL+ +   
Sbjct: 61  GRKPWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIKLNKKERKLALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK        L +S AL++ G         +ARNIP +    V  
Sbjct: 121 NKFIVVDELKFDEIKTKKFQNVLNNLKVSKALVVVGDDSTNAV-KSARNIPAVKTAFVNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V +K+A+ A+E+ +
Sbjct: 180 INVYDILKYNTVVATKTAVAAIEEVY 205


>gi|317054767|ref|YP_004103234.1| 50S ribosomal protein L4/L1e [Ruminococcus albus 7]
 gi|315447036|gb|ADU20600.1| ribosomal protein L4/L1e [Ruminococcus albus 7]
          Length = 207

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V ++ G       +++ IF ++P + ++  ++      +R G   +  R+EV   
Sbjct: 1   MSKIAVVDMTGNKVADTELNDAIFGIEPNKALMHAMVVNFLANQRQGTQSTLTRTEVQGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    ++L KK + LA++ A S K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWVHGGIALGPKPRDYSYSLNKKEKRLAMKSAFSTKVID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++V++ + +KE KTK +V   +A+      +I    +D     +A NIP +    V  
Sbjct: 121 NNLIVVNEIETKEYKTKVMVDMLKAIGAQGKALIVTADVDAKVVKSAANIPGVKTATVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   K ++S  A++ +E+ +
Sbjct: 181 LNVYDILNYDKFIVSSEAVKKIEEVY 206


>gi|163733827|ref|ZP_02141269.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149]
 gi|161392938|gb|EDQ17265.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149]
          Length = 205

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 123/206 (59%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + E +F L+P+  IL RV+RWQ    + G  K K RSEV Y+ 
Sbjct: 1   MKLDVIKLDGAKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GP      H L KK R L L HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++ID++ S   KT  L  +   L    ALIIDG  ++  F  AARNI  +++LP  G 
Sbjct: 121 ELVIIDDVSSD-GKTSALAKQVANLGWKRALIIDGATVNETFAQAARNIDGLDILPTMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205


>gi|3122740|sp|O06114|RL4_MYCSM RecName: Full=50S ribosomal protein L4
 gi|2113890|emb|CAA73669.1| ribosomal protein L4 [Mycobacterium smegmatis]
          Length = 215

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V+   G+  G + +  ++F ++P   ++ +V+  Q   KR G   +K R EV+  G 
Sbjct: 4   KVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGK 63

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKG+GRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  ++ 
Sbjct: 64  KPYRQKGSGRARQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDR 123

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  +   TK   T    L  +  +++   + D     + RN+P ++++    +
Sbjct: 124 IHAVTELVEGQTPSTKSAKTFLGTLTENKKVLVVIGRTDEVGAKSVRNLPGVHVISPDQL 183

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+L    +V S  A+ A
Sbjct: 184 NTYDVLNADDVVFSVEALNA 203


>gi|260438215|ref|ZP_05792031.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM
           2876]
 gi|292809407|gb|EFF68612.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM
           2876]
          Length = 206

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N++G+  G + +++ +F ++    ++ + +  Q   KR G   +K RSEV+  
Sbjct: 1   MAKVSVYNIEGKVVGDMELNDAVFGVEVNTHLVHQAVVLQLANKRQGTQSAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK ++LAL+  L+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGIVFAPKPRDYSFKMNKKEKNLALKSVLTTKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK +V   + L+     ++     ++N  L++RNIP +       
Sbjct: 121 NKFIVVDGLSFDEIKTKNMVNVLKNLE-VKKALVVTDDDNKNVTLSSRNIPGVKTAFTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+  K+V++K  I  +E+ +
Sbjct: 180 INVYDILKYDKMVVAKDVISKIEEVY 205


>gi|291518044|emb|CBK73265.1| LSU ribosomal protein L4P [Butyrivibrio fibrisolvens 16/4]
          Length = 206

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N++G++ G + +++ IFA++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MAKVSVFNMEGKEVGSMDLNDSIFAVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK +  AL+ AL+     
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSVVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L     KTK               ++     D+N  ++A+NIP +       
Sbjct: 121 NKFIVVDELKLDSIKTKDFAKVL-TNLNVEKALVVLDTNDQNVVMSAKNIPTVKTALTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V++K+A++ +++ +
Sbjct: 180 INVYDILKYNTVVVTKAAVDQIQEVY 205


>gi|257870518|ref|ZP_05650171.1| ribosomal protein L4 [Enterococcus gallinarum EG2]
 gi|257804682|gb|EEV33504.1| ribosomal protein L4 [Enterococcus gallinarum EG2]
          Length = 207

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALFKQDGSQNGEITLNEEIFGIEPNETVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS+K  S
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++ ++ L     KTK        L + + +++     +    L+ARN+P+++++    
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLTIDSKVLVVLETENDFAALSARNLPSVSVVTADN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++   K++++++A+  +E+  
Sbjct: 181 VSVLDVVSADKMLVTQTALTQIEEVL 206


>gi|297159598|gb|ADI09310.1| 50S ribosomal protein L4 [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 104/202 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  +    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPAEIFDAQVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  ++  E  TK   T F  +     L++   + D    L+ARN+P +++L    
Sbjct: 121 SRIHVVTGVIEGEVSTKAAKTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +K+A E+ 
Sbjct: 181 LNTYDVLVSDDVVFTKAAFESF 202


>gi|153854971|ref|ZP_01996184.1| hypothetical protein DORLON_02190 [Dorea longicatena DSM 13814]
 gi|149752468|gb|EDM62399.1| hypothetical protein DORLON_02190 [Dorea longicatena DSM 13814]
          Length = 206

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +S+ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVGKIDLSDAVFGVEVNEHLVHMAVVSQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + K+ +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKREKRAALKSALTSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +VID +  +E KTK      + LD  +  ++     ++N +L+ARNI ++       
Sbjct: 121 NKFIVIDEINFEEAKTKNFANILKNLD-VSKALVVLEDDNKNAELSARNIADVKTAKTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+ +  +E+ +
Sbjct: 180 INVYDILKYNTVITTKAVVAKIEEVY 205


>gi|163815976|ref|ZP_02207346.1| hypothetical protein COPEUT_02156 [Coprococcus eutactus ATCC 27759]
 gi|158448786|gb|EDP25781.1| hypothetical protein COPEUT_02156 [Coprococcus eutactus ATCC 27759]
          Length = 206

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 107/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V +++G +   + +++ +F ++  + I+ + +  Q    R G   +K RSEV+  
Sbjct: 1   MASVKVYDIEGNEVETLELNDAVFGVEINEHIMHKAVVGQLANSRQGTQSAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK + LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L  +E KT         L  +   ++     + N  L+A NIP +       
Sbjct: 121 NKLVVVDKLELQEAKTSVFAKILAKLS-APKALVVTKDKNNNVVLSANNIPTVKTTVANS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++VYDIL+  KLVL+K A+ A+E+ +
Sbjct: 180 LSVYDILKYEKLVLTKEAVAAIEEVY 205


>gi|293190258|ref|ZP_06608754.1| ribosomal protein L4/L1 family protein [Actinomyces odontolyticus
           F0309]
 gi|292821074|gb|EFF80027.1| ribosomal protein L4/L1 family protein [Actinomyces odontolyticus
           F0309]
          Length = 216

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G + +   IF +     ++ +V+  Q    R G   +K R EVA  G 
Sbjct: 8   NVDVIDIKGKKAGSVVLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRGEVAGGGK 67

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTG AR  S     F GGG   GP P       PKK++  ALR ALSD+  ++ 
Sbjct: 68  KPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALSDRARADR 127

Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+       +  TK  +    A+      ++   + +    L+ RN+P +++L    +
Sbjct: 128 IHVVTALFEGDKPSTKAALAALSAIVEDRQALVVLERGNELTALSLRNVPEVHVLWADQL 187

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V +++A+E+ 
Sbjct: 188 NTYDVLDADDIVFTQAALESF 208


>gi|227499194|ref|ZP_03929329.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21]
 gi|226904641|gb|EEH90559.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21]
          Length = 209

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M ++++ +L G+  G  I + + +F ++  + ++ + +  Q   +R G   +K R  V  
Sbjct: 1   MPKVAIYDLTGKKTGEEIELMDYVFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LA+R ALS K  
Sbjct: 61  GGRKPWKQKGTGRARAGSVRSPLWVGGGTIFGPSPRSHAIDMPRKARRLAIRCALSSKVA 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              ++++D L   + KTK  V   +  +  +   +I     + N +L++RNI  +  L  
Sbjct: 121 DGSLVIVDGLSFADNKTKNTVEMLKGFEASNKKALIITDGENENVELSSRNIEKVKALSN 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+DIL   K++L+K A+  +E+  
Sbjct: 181 DCLNVFDILNAEKVLLAKDAVARIEEVL 208


>gi|110678719|ref|YP_681726.1| 50S ribosomal protein L4 [Roseobacter denitrificans OCh 114]
 gi|123172736|sp|Q16AF3|RL4_ROSDO RecName: Full=50S ribosomal protein L4
 gi|109454835|gb|ABG31040.1| ribosomal protein L4 [Roseobacter denitrificans OCh 114]
          Length = 205

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 122/206 (59%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + E +F L+P+  IL RV+RWQ    + G  K K RSEV Y+ 
Sbjct: 1   MKLDVIKLDGAKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GP      H L KK R L L HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++ID + S   KT  L  +   L    ALIIDG  ++  F  AARNI  +++LP  G 
Sbjct: 121 ELVIIDEVSSD-GKTAALAKQVANLGWKRALIIDGATVNETFAQAARNIDGLDILPTMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205


>gi|295093644|emb|CBK82735.1| LSU ribosomal protein L4P [Coprococcus sp. ART55/1]
          Length = 206

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V +++G++   + +++ +F ++  + I+ + +  Q    R G   +K RSEV+  
Sbjct: 1   MASVKVYDIEGKEVETLELNDAVFGVEINEHIMHKAVVGQLANNRQGTQSAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      + KK + LA++ ALS K   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L  +E KT         L  +   ++     + N  L+A NIP +       
Sbjct: 121 NKLVVVDKLDLQEAKTSVFAKILAKLS-APKALVVTKDKNNNVVLSANNIPTVKTTVANS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++VYDIL+  KLVL+K A+ A+E+ +
Sbjct: 180 LSVYDILKYEKLVLTKEAVAAIEEVY 205


>gi|15674080|ref|NP_268255.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis Il1403]
 gi|281492758|ref|YP_003354738.1| 50S ribosomal protein L1E (= L4P) [Lactococcus lactis subsp. lactis
           KF147]
 gi|46577289|sp|Q9CDW3|RL4_LACLA RecName: Full=50S ribosomal protein L4
 gi|12725152|gb|AAK06196.1|AE006438_10 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis Il1403]
 gi|281376410|gb|ADA65896.1| LSU ribosomal protein L1E (= L4P) [Lactococcus lactis subsp. lactis
           KF147]
 gi|326407631|gb|ADZ64702.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis CV56]
          Length = 208

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S+   DG   G +++++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQ 179
             ++ +D L     KT        AL +   +++    + +   +L+ARN+ N+ +    
Sbjct: 121 GKLIAVDTLDFTAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLANVKVTTAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             +V DI+   KL++ +SA+  +E+  
Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEEVL 207


>gi|297569421|ref|YP_003690765.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2]
 gi|296925336|gb|ADH86146.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2]
          Length = 207

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V N+  E  G + + + +F ++    +L  ++R Q   +R G + +K R +V+ +
Sbjct: 1   MAVTEVYNIKKEKVGDVELDDALFGVEVNPHLLHDIVRMQRANRRAGTACTKTRKDVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S+    +RGGG  FGP P     ++P+K R L LR ALS +   
Sbjct: 61  GKKPWRQKGTGRARAGSRKSPVWRGGGTVFGPRPRSYAFSMPRKARKLGLRMALSSRCAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D+    E KTK  V       + NA +I   +     + ++RN+P   ++P +G
Sbjct: 121 NLLVVLDDFQLDEIKTKKFVEVMDGFSIDNA-LIVVPESIETLERSSRNVPGFKVMPTEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL    +VL +  IE L +R 
Sbjct: 180 LNVYDILLHKHIVLLQPCIEQLRERL 205


>gi|116513053|ref|YP_811960.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris SK11]
 gi|123125252|sp|Q02W25|RL4_LACLS RecName: Full=50S ribosomal protein L4
 gi|116108707|gb|ABJ73847.1| LSU ribosomal protein L4P [Lactococcus lactis subsp. cremoris SK11]
          Length = 208

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S+   DG   G +++++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQ 179
             ++ +D L     KT        AL +   +++    + +   +L+ARN+ N+ +    
Sbjct: 121 GKLIAVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKVTTAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             +V DI+   KL++ +SA+  +E+  
Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEEVL 207


>gi|149203512|ref|ZP_01880482.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035]
 gi|149143345|gb|EDM31384.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035]
          Length = 205

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + EDIF L+P+  IL RV+RWQ  + + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGTAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  K+   FR GG   GP P    H LPKKVR+L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++D   S   KT  L  + + L     L+IDG Q++  F  AA NI  +++LP  G 
Sbjct: 121 ALVILDEASSN-GKTGELAKQVKNLGWKRVLVIDGAQVNAEFARAAANIEGLDVLPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVITKAGVEALEARLK 205


>gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104]
 gi|227555854|ref|ZP_03985901.1| 50S ribosomal protein L4 [Enterococcus faecalis HH22]
 gi|229546963|ref|ZP_04435688.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1322]
 gi|229550552|ref|ZP_04439277.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 29200]
 gi|255971710|ref|ZP_05422296.1| 50S ribosomal protein L4 [Enterococcus faecalis T1]
 gi|255974710|ref|ZP_05425296.1| 50S ribosomal protein L4 [Enterococcus faecalis T2]
 gi|256855164|ref|ZP_05560525.1| ribosomal protein L4 [Enterococcus faecalis T8]
 gi|256956861|ref|ZP_05561032.1| 50S ribosomal protein L4 [Enterococcus faecalis DS5]
 gi|256960668|ref|ZP_05564839.1| 50S ribosomal protein L4 [Enterococcus faecalis Merz96]
 gi|256964133|ref|ZP_05568304.1| 50S ribosomal protein L4 [Enterococcus faecalis HIP11704]
 gi|257078531|ref|ZP_05572892.1| 50S ribosomal protein L4 [Enterococcus faecalis JH1]
 gi|257081498|ref|ZP_05575859.1| 50S ribosomal protein L4 [Enterococcus faecalis E1Sol]
 gi|257084146|ref|ZP_05578507.1| 50S ribosomal protein L4 [Enterococcus faecalis Fly1]
 gi|257087973|ref|ZP_05582334.1| 50S ribosomal protein L4 [Enterococcus faecalis D6]
 gi|257088650|ref|ZP_05583011.1| 50S ribosomal protein L4 [Enterococcus faecalis CH188]
 gi|257417577|ref|ZP_05594571.1| 50S ribosomal protein L4 [Enterococcus faecalis AR01/DG]
 gi|257418698|ref|ZP_05595692.1| 50S ribosomal protein L4 [Enterococcus faecalis T11]
 gi|257421501|ref|ZP_05598491.1| 50S ribosomal protein L4 [Enterococcus faecalis X98]
 gi|293382757|ref|ZP_06628682.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis R712]
 gi|293388060|ref|ZP_06632588.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis S613]
 gi|294781052|ref|ZP_06746403.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           PC1.1]
 gi|300861819|ref|ZP_07107899.1| 50S ribosomal protein L4 [Enterococcus faecalis TUSoD Ef11]
 gi|307269088|ref|ZP_07550449.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX4248]
 gi|307274172|ref|ZP_07555380.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0855]
 gi|307276397|ref|ZP_07557520.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX2134]
 gi|307278607|ref|ZP_07559677.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0860]
 gi|307287013|ref|ZP_07567088.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0109]
 gi|307291646|ref|ZP_07571521.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0411]
 gi|312901121|ref|ZP_07760409.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0470]
 gi|312904683|ref|ZP_07763838.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0635]
 gi|312908652|ref|ZP_07767594.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO
           512]
 gi|312909200|ref|ZP_07768057.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO
           516]
 gi|312952608|ref|ZP_07771472.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0102]
 gi|227072541|gb|EEI10504.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104]
 gi|227175021|gb|EEI55993.1| 50S ribosomal protein L4 [Enterococcus faecalis HH22]
 gi|229304271|gb|EEN70267.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 29200]
 gi|229307891|gb|EEN73878.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1322]
 gi|255962728|gb|EET95204.1| 50S ribosomal protein L4 [Enterococcus faecalis T1]
 gi|255967582|gb|EET98204.1| 50S ribosomal protein L4 [Enterococcus faecalis T2]
 gi|256709677|gb|EEU24724.1| ribosomal protein L4 [Enterococcus faecalis T8]
 gi|256947357|gb|EEU63989.1| 50S ribosomal protein L4 [Enterococcus faecalis DS5]
 gi|256951164|gb|EEU67796.1| 50S ribosomal protein L4 [Enterococcus faecalis Merz96]
 gi|256954629|gb|EEU71261.1| 50S ribosomal protein L4 [Enterococcus faecalis HIP11704]
 gi|256986561|gb|EEU73863.1| 50S ribosomal protein L4 [Enterococcus faecalis JH1]
 gi|256989528|gb|EEU76830.1| 50S ribosomal protein L4 [Enterococcus faecalis E1Sol]
 gi|256992176|gb|EEU79478.1| 50S ribosomal protein L4 [Enterococcus faecalis Fly1]
 gi|256996003|gb|EEU83305.1| 50S ribosomal protein L4 [Enterococcus faecalis D6]
 gi|256997462|gb|EEU83982.1| 50S ribosomal protein L4 [Enterococcus faecalis CH188]
 gi|257159405|gb|EEU89365.1| 50S ribosomal protein L4 [Enterococcus faecalis ARO1/DG]
 gi|257160526|gb|EEU90486.1| 50S ribosomal protein L4 [Enterococcus faecalis T11]
 gi|257163325|gb|EEU93285.1| 50S ribosomal protein L4 [Enterococcus faecalis X98]
 gi|291079917|gb|EFE17281.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis R712]
 gi|291082511|gb|EFE19474.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis S613]
 gi|294451855|gb|EFG20306.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           PC1.1]
 gi|295112507|emb|CBL31144.1| Ribosomal protein L4 [Enterococcus sp. 7L76]
 gi|300848344|gb|EFK76101.1| 50S ribosomal protein L4 [Enterococcus faecalis TUSoD Ef11]
 gi|306497265|gb|EFM66807.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0411]
 gi|306501959|gb|EFM71248.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0109]
 gi|306504667|gb|EFM73867.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0860]
 gi|306506877|gb|EFM76024.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX2134]
 gi|306509134|gb|EFM78196.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0855]
 gi|306514568|gb|EFM83122.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX4248]
 gi|310625439|gb|EFQ08722.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO
           512]
 gi|310629396|gb|EFQ12679.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0102]
 gi|310632035|gb|EFQ15318.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0635]
 gi|311290442|gb|EFQ68998.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO
           516]
 gi|311291793|gb|EFQ70349.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0470]
 gi|315026834|gb|EFT38766.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX2137]
 gi|315028874|gb|EFT40806.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX4000]
 gi|315031140|gb|EFT43072.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0017]
 gi|315036014|gb|EFT47946.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0027]
 gi|315145337|gb|EFT89353.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX2141]
 gi|315147170|gb|EFT91186.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX4244]
 gi|315151072|gb|EFT95088.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0012]
 gi|315153608|gb|EFT97624.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0031]
 gi|315156212|gb|EFU00229.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0043]
 gi|315158643|gb|EFU02660.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0312]
 gi|315160729|gb|EFU04746.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0645]
 gi|315165900|gb|EFU09917.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX1302]
 gi|315168101|gb|EFU12118.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX1341]
 gi|315171459|gb|EFU15476.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX1342]
 gi|315172693|gb|EFU16710.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX1346]
 gi|315573515|gb|EFU85706.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0309B]
 gi|315579327|gb|EFU91518.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0630]
 gi|315582137|gb|EFU94328.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           TX0309A]
 gi|323479423|gb|ADX78862.1| 50S ribosomal protein L4 [Enterococcus faecalis 62]
 gi|327534005|gb|AEA92839.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
           OG1RF]
          Length = 207

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LSDK   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++ ++ L     KTK        L +   +++     +    L+ARN+PN++++    
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++  +K++ +++A+  +E+  
Sbjct: 181 VSVLDVVSANKVLATQTALTQIEEVL 206


>gi|315605900|ref|ZP_07880931.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312182|gb|EFU60268.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 216

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +L G+  G +S+   IF +     ++ +V+  Q    R G   +K R +VA  G 
Sbjct: 8   NVDVIDLTGKKVGSVSLPGSIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRGQVAGGGK 67

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTG AR  S     F GGG   GP P       PKK++  ALR ALSD+  ++ 
Sbjct: 68  KPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALSDRARADR 127

Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+      ++  TK  +   RA+      ++   + +    L+ RN+P +++L    +
Sbjct: 128 IHVVTALFEGEKPSTKAALAALRAIVEDRQALVVLERGNELTALSLRNVPEVHVLWADQL 187

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V +++A+E+ 
Sbjct: 188 NTYDVLDADDIVFTQAALESF 208


>gi|270307843|ref|YP_003329901.1| ribosomal protein L4 [Dehalococcoides sp. VS]
 gi|270153735|gb|ACZ61573.1| ribosomal protein L4 [Dehalococcoides sp. VS]
          Length = 210

 Score =  199 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 109/203 (53%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ V N  GE    IS+SED+F +   + ++ +    Q    R G   +K R EV  + 
Sbjct: 1   MEIPVYNASGEIIKNISISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG AR  +      R GG AFGP P      LPKK+R  A+R  LS K  S 
Sbjct: 61  RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++ VID L  +E KT+ +     AL + +  +I     D NF  +ARNIP++   P   +
Sbjct: 121 ELKVIDQLSFEEPKTRDMAKILAALQVISPALIAVDNPDTNFIKSARNIPSVKTTPANLL 180

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N+ D+L+  +LV+++ A+  +E+
Sbjct: 181 NISDMLKNKQLVMTEEAVRQVEE 203


>gi|29374852|ref|NP_814005.1| 50S ribosomal protein L4 [Enterococcus faecalis V583]
 gi|46577230|sp|Q839G3|RL4_ENTFA RecName: Full=50S ribosomal protein L4
 gi|29342310|gb|AAO80076.1| ribosomal protein L4 [Enterococcus faecalis V583]
          Length = 207

 Score =  199 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    +  PKKVR LA++  LSDK   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKFPKKVRRLAMKSVLSDKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++ ++ L     KTK        L +   +++     +    L+ARN+PN++++    
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++  +K++ +++A+  +E+  
Sbjct: 181 VSVLDVVSANKVLATQTALTQIEEVL 206


>gi|253580620|ref|ZP_04857884.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847991|gb|EES75957.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39BFAA]
          Length = 206

 Score =  199 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N++G + G + +++ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVTVYNMEGNEVGTMELNDAVFGVEVNEHLVHLAVVRQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK R  AL+ AL+ K   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L   + KTK +         +   ++     D+N  L+ARNI ++       
Sbjct: 121 NKLVVVDALTLADVKTKEMQKVL-TNLKAEKALVITATDDKNVILSARNITDVQTATPST 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD++  + ++++K A+ ++E+ +
Sbjct: 180 INVYDVMNHNTVIVTKDAVASIEEVY 205


>gi|237786394|ref|YP_002907099.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385]
 gi|259491550|sp|C4LL51|RL4_CORK4 RecName: Full=50S ribosomal protein L4
 gi|237759306|gb|ACR18556.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385]
          Length = 219

 Score =  199 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/204 (34%), Positives = 105/204 (51%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V   DG   G + +   +F ++    +L +V+  Q   +R G   +K R +V   G 
Sbjct: 5   TLDVHTADGSTNGTVDLPSSVFDVEVSTPLLHQVVTAQLAARRQGTHATKTRGQVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   + 
Sbjct: 65  KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYDQRTPKKMKAAALRGALSDRARHDR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+++LV  +   TK   T    L    ++++   + D N   +ARN+PN+++LP   +
Sbjct: 125 IHVVEDLVPGQTPSTKAARTFIGRLTDRKSVLVVLGREDVNSIKSARNLPNVHILPSDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    LV S  A+ A  +R
Sbjct: 185 NTYDVLNSDDLVFSVEALNAFIER 208


>gi|188584837|ref|YP_001916382.1| LSU ribosomal protein L4P [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|226730697|sp|B2A4E0|RL4_NATTJ RecName: Full=50S ribosomal protein L4
 gi|179349524|gb|ACB83794.1| LSU ribosomal protein L4P [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 207

 Score =  199 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N +G   G I++ + IFA    + ++   +      KR G + +K RSEV   
Sbjct: 1   MPKVALYNNEGSQVGEITLDDSIFATDINETLMHEAVNMHLASKRRGTASAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     + GGG +F P P    + +PKK +  A++ AL+ K  +
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPIWVGGGISFAPKPRDYSYKMPKKAKRKAIKSALTTKLNN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +I++++ L  +  KTK ++     L +++  +I     D N   + RNIP ++      
Sbjct: 121 GEIVILEELTMEAPKTKKIIEMLENLSINHKAMIVTGASDLNVYRSTRNIPGVSSALANN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L    LVL+K A+  +E+ F
Sbjct: 181 LNVYDVLNHDYLVLTKDAVSVIEEVF 206


>gi|294463048|gb|ADE77062.1| unknown [Picea sitchensis]
          Length = 323

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/204 (36%), Positives = 113/204 (55%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V N+  EDKG+I ++ D+F +  ++ I+ RV+RWQ  ++R G   +K  SEV+ TG 
Sbjct: 113 TLRVTNMRNEDKGMIVLAGDVFDVPIRKDIIHRVVRWQLAKRRQGTHSTKTISEVSGTGR 172

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTG+ARH +    QFR G    GP P      L KKVR L L+ ALS +     
Sbjct: 173 KPWPQKGTGKARHGTLRGPQFRHGATMHGPKPRSHAIKLQKKVRRLGLKIALSARAAEGK 232

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +MV D       KTK +      L+    + +++G  +++   LA +N+   N+LP  G+
Sbjct: 233 LMVFDTFDLTTHKTKEVAKYVSQLENCKKILLVEGGPVNKKLGLATQNLHYANVLPSIGL 292

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           NVY IL+   LV++  A+  + +R
Sbjct: 293 NVYSILQHDTLVMTADAVNRIVER 316


>gi|325104867|ref|YP_004274521.1| LSU ribosomal protein L4P [Pedobacter saltans DSM 12145]
 gi|324973715|gb|ADY52699.1| LSU ribosomal protein L4P [Pedobacter saltans DSM 12145]
          Length = 209

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N+ G++ G  + + E IF ++P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MEVKVLNISGKETGAKVQLPEGIFGIEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTG AR  S     F GGG+ FGP P      L KK++ LA + ALS K   
Sbjct: 61  TRKLYKQKGTGGARAGSIKSPLFNGGGRIFGPQPRDYSFKLNKKLKELARKSALSYKAQG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  +    A    +   ++   + + N  LA+RN+P   ++   
Sbjct: 121 NSILVLEDFNFETPKTKNFLNLLSALNSSNEKTLVVLAEGNENVYLASRNLPKAKVVVAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YD+L  +KLVL+  +++ LE+  
Sbjct: 181 DLNTYDVLDAAKLVLTTGSVKTLEEAL 207


>gi|145225624|ref|YP_001136302.1| 50S ribosomal protein L4 [Mycobacterium gilvum PYR-GCK]
 gi|315445977|ref|YP_004078856.1| 50S ribosomal protein L4P [Mycobacterium sp. Spyr1]
 gi|145218110|gb|ABP47514.1| LSU ribosomal protein L4P [Mycobacterium gilvum PYR-GCK]
 gi|315264280|gb|ADU01022.1| LSU ribosomal protein L4P [Mycobacterium sp. Spyr1]
          Length = 218

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V    G+  G + +   +F  +P   ++ +V+  Q   KR G   +K R+ V+  G 
Sbjct: 5   TIDVVTPAGKKDGTVELPAALFDAEPNIALMHQVVTAQLAAKRQGTHATKTRAMVSGGGK 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  ++ 
Sbjct: 65  KPYRQKGTGRARQGSTRAPQFTGGGVVHGPQPRDYSQRTPKKMIAAALRSALSDRARNDR 124

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  + + +  +   TK        L     +++   + D    L+ RN+P ++++    +
Sbjct: 125 IHAITEVVEGQSPSTKSAKAFLATLTDRKQVLVVIGRADETSALSVRNLPGVHVISPDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+L+   +V S  A+ A
Sbjct: 185 NTYDVLKADDVVFSVEALNA 204


>gi|110800870|ref|YP_697093.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124]
 gi|168211904|ref|ZP_02637529.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626]
 gi|168215177|ref|ZP_02640802.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969]
 gi|168216632|ref|ZP_02642257.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239]
 gi|169347046|ref|ZP_02865988.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495]
 gi|182626931|ref|ZP_02954664.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721]
 gi|123148513|sp|Q0TMP7|RL4_CLOP1 RecName: Full=50S ribosomal protein L4
 gi|110675517|gb|ABG84504.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124]
 gi|169296729|gb|EDS78858.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495]
 gi|170710168|gb|EDT22350.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626]
 gi|170713383|gb|EDT25565.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969]
 gi|177907721|gb|EDT70336.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721]
 gi|182381262|gb|EDT78741.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239]
          Length = 204

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +G+  G I ++E +F ++  +  L +V+  Q   KR G   +K RSEV   
Sbjct: 1   MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A+  AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+++L  +  KTK  V    A + +   +I   +++ N   +ARNI  + ++PV  
Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFE-AKKTLIITAEVNENVYKSARNIEGVTVMPVNN 177

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L C  L+++K A+  +E+ +
Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203


>gi|73748317|ref|YP_307556.1| 50S ribosomal protein L4 [Dehalococcoides sp. CBDB1]
 gi|147669097|ref|YP_001213915.1| 50S ribosomal protein L4 [Dehalococcoides sp. BAV1]
 gi|289432365|ref|YP_003462238.1| ribosomal protein L4/L1e [Dehalococcoides sp. GT]
 gi|109893591|sp|Q3ZZM3|RL4_DEHSC RecName: Full=50S ribosomal protein L4
 gi|189029500|sp|A5FRZ0|RL4_DEHSB RecName: Full=50S ribosomal protein L4
 gi|73660033|emb|CAI82640.1| ribosomal protein L4 [Dehalococcoides sp. CBDB1]
 gi|146270045|gb|ABQ17037.1| LSU ribosomal protein L4P [Dehalococcoides sp. BAV1]
 gi|288946085|gb|ADC73782.1| ribosomal protein L4/L1e [Dehalococcoides sp. GT]
          Length = 210

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/203 (34%), Positives = 107/203 (52%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ V N  GE    I++SED+F +   + ++ +    Q    R G   +K R EV  + 
Sbjct: 1   MEIPVYNASGEIVKNINISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG AR  +      R GG AFGP P      LPKK+R  A+R  LS K  S 
Sbjct: 61  RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++ VID L   E KT+ +     AL + +  +I     D NF  +ARNIP +   P   +
Sbjct: 121 ELKVIDQLSFDEPKTRDMAKILTALQVISPTLIAVDNPDTNFIKSARNIPAVKTTPANLL 180

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N+ D+L+  +LV+++ A+  +E+
Sbjct: 181 NISDMLKNKQLVMTEEAVRQVEE 203


>gi|302869971|ref|YP_003838608.1| 50S ribosomal protein L4/L1e [Micromonospora aurantiaca ATCC 27029]
 gi|315501432|ref|YP_004080319.1| ribosomal protein l4/l1e [Micromonospora sp. L5]
 gi|302572830|gb|ADL49032.1| ribosomal protein L4/L1e [Micromonospora aurantiaca ATCC 27029]
 gi|315408051|gb|ADU06168.1| ribosomal protein L4/L1e [Micromonospora sp. L5]
          Length = 221

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 6/208 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N++G   G + +  DIF  +    ++ +V+  Q    R G  K+K R EV+  
Sbjct: 1   MTTVDVINVEGAKSGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYKQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN-----IN 174
             + V++  VS ++  TK  +     L  +  +++     D    ++ RN+ N     ++
Sbjct: 121 GQVHVVEAFVSGEKPSTKAALATLTKLTQARRVLVVLSSTDELNWVSLRNLRNARDSRVH 180

Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEAL 202
           L+    +N YD+L    +V +K A++  
Sbjct: 181 LIEAGQLNTYDVLVADDVVFTKEALDEF 208


>gi|315640160|ref|ZP_07895282.1| 50S ribosomal protein L4 [Enterococcus italicus DSM 15952]
 gi|315484137|gb|EFU74611.1| 50S ribosomal protein L4 [Enterococcus italicus DSM 15952]
          Length = 207

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVFDAIIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS+K  S
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++ ++ L     KTK        L +   +++   + +    L+ARN+PN++++    
Sbjct: 121 NNLVAVEALSFDAPKTKEFKQVLANLSIDAKVLVVLEEGNDFVALSARNLPNVSVVSADN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++  +K++ +++A+  +E+  
Sbjct: 181 VSVLDVVSNNKVLATQTALTQIEEVL 206


>gi|125625142|ref|YP_001033625.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166234678|sp|A2RNQ4|RL4_LACLM RecName: Full=50S ribosomal protein L4
 gi|124493950|emb|CAL98945.1| 50S ribosomal protein L4 (BL4) [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071950|gb|ADJ61350.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 208

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S+   DG   G +++++ +F ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MAKVSLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GKKPWRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVTD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQ 179
             ++ +D L     KT        AL +   +++    + +   +L+ARN+ N+ +    
Sbjct: 121 GKLIAVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKVTTAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             +V DI+   KL++ +SA+  +E+  
Sbjct: 181 SASVLDIVSADKLLVVQSALTQIEEVL 207


>gi|167748431|ref|ZP_02420558.1| hypothetical protein ANACAC_03175 [Anaerostipes caccae DSM 14662]
 gi|317472036|ref|ZP_07931368.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA]
 gi|167652423|gb|EDR96552.1| hypothetical protein ANACAC_03175 [Anaerostipes caccae DSM 14662]
 gi|316900440|gb|EFV22422.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA]
          Length = 206

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M E+SV N++G +   +++++ IF ++  + ++   +  Q    R G   +K RSEV   
Sbjct: 1   MAEVSVLNMEGNEVEKLNLNDGIFGVEINEHLVHLAVVSQLANNRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK R LAL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSIRAPQWTGGGVVFAPKPREYSKKLNKKERRLALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D     + KTK +      L++  AL+I G + D    L+ARNIP +       
Sbjct: 121 NKFIVVDEFKFDDVKTKNVANMLNNLNVKKALVIMGDKNDNLI-LSARNIPGVKTALTST 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+   +V+SK A+  +E+ +
Sbjct: 180 INVYDILKYDTVVVSKEAVANIEEVY 205


>gi|304315941|ref|YP_003851086.1| ribosomal protein L4/L1e [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777443|gb|ADL68002.1| ribosomal protein L4/L1e [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 206

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 119/206 (57%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N++GE  G + +S+++F ++    ++  V+      +R G   +K R EV   
Sbjct: 1   MPKVAVYNINGEQIGEMELSDNVFGVEVNVPVMHEVVLNYLASQRQGTHSTKRRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  FGP P    + +PKKV+ LAL+ ALS K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYNIPKKVKRLALKSALSSKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+VID++   E KTK +    +  ++ NA +I   +  +N  L++RNIPN+  +    
Sbjct: 121 NEIIVIDDINIDEPKTKKVADMLKKFNVKNA-LIVIPEDKKNVVLSSRNIPNVKAVYANS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L+  + +++K A+  +E+ +
Sbjct: 180 LNTYDVLKYDRFIITKDAVNKVEEVY 205


>gi|302388087|ref|YP_003823909.1| ribosomal protein L4/L1e [Clostridium saccharolyticum WM1]
 gi|302198715|gb|ADL06286.1| ribosomal protein L4/L1e [Clostridium saccharolyticum WM1]
          Length = 206

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G + +++ +F +   + ++   +  Q   KR G  K+K R+EV+  
Sbjct: 1   MANVSVYNMEGKEVGTLELNDAVFGVDVNEHLVHMAVVSQLANKRQGTQKAKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F P P      L KK R LAL+ AL+ +   
Sbjct: 61  GRKPWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKERRLALKSALTSRVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK   T    L +S AL++ G         +ARNI  +       
Sbjct: 121 NKFIVVDELKFDEIKTKKFQTVLNNLKVSKALVVMGEDSTNAVM-SARNIAAVKTAFANT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ S +V +K+A+ A+E+ +
Sbjct: 180 INVYDILKYSTVVATKTAVAAIEEVY 205


>gi|110803426|ref|YP_699662.1| 50S ribosomal protein L4 [Clostridium perfringens SM101]
 gi|122956495|sp|Q0SQE5|RL4_CLOPS RecName: Full=50S ribosomal protein L4
 gi|110683927|gb|ABG87297.1| 50S ribosomal protein L4 [Clostridium perfringens SM101]
          Length = 204

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +G+  G I ++E +F ++  +  L +V+  Q   KR G   +K RSEV   
Sbjct: 1   MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A+  AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+++L  +  KTK  V    A + +   +I   +++ N   +ARNI  + ++PV  
Sbjct: 120 -DMVVLEDLNFEAPKTKEAVKMLNAFE-AKKTLIITAEVNENVYKSARNIEGVTVMPVNN 177

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L C  L+++K A+  +E+ +
Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203


>gi|295838405|ref|ZP_06825338.1| ribosomal protein L4/L1 family protein [Streptomyces sp. SPB74]
 gi|302519660|ref|ZP_07272002.1| ribosomal protein L4/L1 [Streptomyces sp. SPB78]
 gi|197695798|gb|EDY42731.1| ribosomal protein L4/L1 family protein [Streptomyces sp. SPB74]
 gi|302428555|gb|EFL00371.1| ribosomal protein L4/L1 [Streptomyces sp. SPB78]
          Length = 216

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 104/202 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTVDILSPAGDKAGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+  ++  E  TK   T F  +     L++   + D    L+ARN+P +++L    
Sbjct: 121 ARIHVVSGVIEGEVSTKAAKTLFGKISERKNLLLVAERSDEAAWLSARNLPRVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +++A E+ 
Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202


>gi|145596433|ref|YP_001160730.1| ribosomal protein L4/L1e [Salinispora tropica CNB-440]
 gi|145305770|gb|ABP56352.1| LSU ribosomal protein L4P [Salinispora tropica CNB-440]
          Length = 216

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V  ++G   G + +  DIF  +    ++ +V+  Q    R G  K+K R EVA  
Sbjct: 1   MTTVDVLTVEGTKAGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARA 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + + V++  V+ ++  TK  +     L  +  +++     D    ++ RN P ++L+   
Sbjct: 121 DKVHVVEAFVAGEKPSTKAALATLAKLTEARRVLVVLSSTDELNWVSLRNEPRVHLIESG 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V +K A+E  
Sbjct: 181 QLNTYDVLLADDVVFTKEALEEF 203


>gi|42518430|ref|NP_964360.1| 50S ribosomal protein L4 [Lactobacillus johnsonii NCC 533]
 gi|227888852|ref|ZP_04006657.1| 50S ribosomal protein L4 [Lactobacillus johnsonii ATCC 33200]
 gi|268318852|ref|YP_003292508.1| ribosomal protein L4 [Lactobacillus johnsonii FI9785]
 gi|46577154|sp|P61064|RL4_LACJO RecName: Full=50S ribosomal protein L4
 gi|41582715|gb|AAS08326.1| 50S ribosomal protein L4 [Lactobacillus johnsonii NCC 533]
 gi|227850689|gb|EEJ60775.1| 50S ribosomal protein L4 [Lactobacillus johnsonii ATCC 33200]
 gi|262397227|emb|CAX66241.1| ribosomal protein L4 [Lactobacillus johnsonii FI9785]
 gi|329666693|gb|AEB92641.1| 50S ribosomal protein L4 [Lactobacillus johnsonii DPC 6026]
          Length = 205

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G+  G + ++E+IF ++P + ++   +  Q   KR G S  K RS V   
Sbjct: 1   MANLEIIDQKGKSAGNVDLNEEIFGIEPNESVVFDAIIRQRAGKRQGTSAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKMDMPRKARRLAMKSVLSQKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ND++++D L  +  KTK L       ++S  +++     D+N QL+ +N+P + ++PV G
Sbjct: 121 NDLIILDQLTLEAPKTKELKAILDNANVSGKVLVVSD--DKNVQLSGKNLPKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KLVL++ AI+ +E+  
Sbjct: 179 LNVVDAVDYQKLVLTQDAIKRIEEVL 204


>gi|294675857|ref|YP_003576472.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003]
 gi|294474677|gb|ADE84065.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003]
          Length = 206

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 123/206 (59%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G I + E +F L+P+  IL RV+RWQ  + + G     G+S+V+Y+ 
Sbjct: 1   MKLDVIKLDGGTAGSIELDEALFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH SK    FR GG   GP P    H L KK R+L LRHALS K  S 
Sbjct: 61  KKIYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHAHDLTKKFRALGLRHALSAKAKSG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VI+     E KT  L    + L     L+IDG  ++ NF LAARN+  I++LP  G 
Sbjct: 121 SLVVIEAADMAEAKTALLAKAAKELGWKKVLVIDGASVNENFALAARNLDGIDVLPTMGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LV++K+ +EALE R K
Sbjct: 181 NVYDILKRDTLVITKAGVEALEARLK 206


>gi|239929513|ref|ZP_04686466.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672]
 gi|291437838|ref|ZP_06577228.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672]
 gi|291340733|gb|EFE67689.1| 50S ribosomal protein L4 [Streptomyces ghanaensis ATCC 14672]
          Length = 219

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  G+  G + +  +IF ++     ++ +V+  Q    R G  K+K R EV  
Sbjct: 1   MSTVDILSPAGDKAGTVELPAEIFGVEKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGIVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            N I V+  +V  +   TK   + F  +     L++   + D    L+ARN+P +++L  
Sbjct: 121 HNRIHVVTGVVEGETPSTKAAKSLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    +V +K+A E+ 
Sbjct: 181 GQLNTYDVLVSDDVVFTKAAFESF 204


>gi|225869537|ref|YP_002745484.1| 50S ribosomal protein L4 [Streptococcus equi subsp. equi 4047]
 gi|254803754|sp|C0M6G6|RL4_STRE4 RecName: Full=50S ribosomal protein L4
 gi|225698941|emb|CAW91969.1| 50S ribosomal protein L4 [Streptococcus equi subsp. equi 4047]
          Length = 207

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++DIF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSTVELNDDIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + +++L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206


>gi|85703988|ref|ZP_01035091.1| 50S ribosomal protein L4 [Roseovarius sp. 217]
 gi|85671308|gb|EAQ26166.1| 50S ribosomal protein L4 [Roseovarius sp. 217]
          Length = 205

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 95/206 (46%), Positives = 127/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + + EDIF L+P+  IL RV+RWQ  + + G  K K RSE +Y+ 
Sbjct: 1   MKLDVIKLDGGTAGSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  K+   FR GG   GP P    H LPKKVR+L L+HALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++ID   S   KT  L  + + L    AL+IDG Q++  F  AA NI  +++LP  G 
Sbjct: 121 ELVIIDVASSN-GKTGELAKQVKNLGWKRALVIDGAQVNAEFARAAANIEGLDVLPSMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+   LVL+K+ +EALE R K
Sbjct: 180 NVYDILKRDTLVLTKAGVEALEARLK 205


>gi|302536252|ref|ZP_07288594.1| 50S ribosomal protein L4 [Streptomyces sp. C]
 gi|302445147|gb|EFL16963.1| 50S ribosomal protein L4 [Streptomyces sp. C]
          Length = 216

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 103/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V     TK   T F  +     L++   + D    L+ARN+P +++L    
Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLFGKISERKNLLLVAERSDELAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++    +V +++A+E+ 
Sbjct: 181 LNTYDVIVSDDVVFTQAALESF 202


>gi|225867666|ref|YP_002743614.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus]
 gi|259491569|sp|C0MCB1|RL4_STRS7 RecName: Full=50S ribosomal protein L4
 gi|225700942|emb|CAW97646.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus]
          Length = 207

 Score =  198 bits (503), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + +++L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVNADKLLVTKEAISTIEEVL 206


>gi|288574663|ref|ZP_06393020.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570404|gb|EFC91961.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 206

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + +  + GE  G +S+S ++F +      + +V+  Q   +R G   +KGR +V   
Sbjct: 1   MPSIKLVTITGESTGELSLSGNVFDVPLHVPAMHQVVVAQLANRRQGTHCTKGRGDVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRARH S     + GGG   GP P      + KKVR LA+  ALS K   
Sbjct: 61  GKKPWRQKHTGRARHGSSRSPIWVGGGVTHGPKPRNYRQKVNKKVRRLAICSALSQKIRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +M  +    ++  TK +   F++L      ++     D N  ++ RNIP  ++L V  
Sbjct: 121 AQLMGFEAFSMEKPSTKIMKGLFQSLG-VEKPLVIVDHRDENISMSTRNIPGADVLHVDS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+   + +S  A++ LE+ +
Sbjct: 180 INVYDLLKHGHVFISAGAVKKLEEVY 205


>gi|57234685|ref|YP_181219.1| 50S ribosomal protein L4 [Dehalococcoides ethenogenes 195]
 gi|109893590|sp|Q3Z980|RL4_DEHE1 RecName: Full=50S ribosomal protein L4
 gi|57225133|gb|AAW40190.1| ribosomal protein L4 [Dehalococcoides ethenogenes 195]
          Length = 210

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/203 (35%), Positives = 107/203 (52%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ V N  GE    IS+SED+F +   + ++ +    Q    R G   +K R EV  + 
Sbjct: 1   MEIPVYNASGEIIKNISISEDVFGVPFNEALVHQAFVAQQANARQGTQSTKTRGEVQGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG AR  +      R GG AFGP P      LPKK+R  A+R  LS K  S 
Sbjct: 61  RKIYRQKGTGNARMGTNRSPVRRHGGVAFGPRPRDFSKDLPKKMRRQAIRCVLSFKLESG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++ V+D L   E KT+ +     AL + +  +I     D NF  +ARNIP +   P   +
Sbjct: 121 ELKVVDQLSFDEPKTRDMAKILAALQVMSPTLIAVDNPDTNFIKSARNIPAVKTTPANLL 180

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N+ D+LR  +LV+++ A+  +E+
Sbjct: 181 NISDMLRNKQLVMTEEAVRQVEE 203


>gi|46396649|sp|Q8XHS4|RL4_CLOPE RecName: Full=50S ribosomal protein L4
          Length = 204

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +G+  G I ++E +F ++  +  L +V+  Q   KR G   +K RSEV   
Sbjct: 1   MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A+  AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+++L  +  KTK  V    A + +   +I   +++ N   +ARNI  + ++PV  
Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFE-AKKTLIITAEVNENVYKSARNIRGVTVMPVNN 177

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L C  L+++K A+  +E+ +
Sbjct: 178 INVYDLLNCKTLMITKEAVNKIEEVY 203


>gi|318058127|ref|ZP_07976850.1| 50S ribosomal protein L4 [Streptomyces sp. SA3_actG]
 gi|318076020|ref|ZP_07983352.1| 50S ribosomal protein L4 [Streptomyces sp. SA3_actF]
          Length = 216

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 104/202 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTVDILSPAGDKAGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+  ++  E  TK   T F  +     L++   + D    L+ARN+P +++L    
Sbjct: 121 ARIHVVSGVIEGEVSTKAAKTLFGKISERKNLLLIAERSDEAAWLSARNLPRVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +++A E+ 
Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202


>gi|319789239|ref|YP_004150872.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1]
 gi|317113741|gb|ADU96231.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1]
          Length = 208

 Score =  197 bits (502), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 118/207 (57%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ V +L+ ++ G + + ++I     +Q  +   ++WQ  ++R G   +K R EV   G
Sbjct: 1   MEIKVVDLNNKETGTVQIKDEIANAPIKQHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QK TGRAR  S    Q+ GGG   GP P    + LPKKVR +AL+  ++ +    
Sbjct: 61  RKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYSYNLPKKVRKVALKSVVAGRIQEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + +V+++   ++ KTK  V   +   L+ S  L++   +LD N  L+ RN+PN+ +LPV+
Sbjct: 121 NFIVVEDFSFEKPKTKQAVEFLKNLGLENSKVLLVVPAELDENTYLSFRNLPNVKVLPVE 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+NVYDIL   K V+ KS +  +E+R 
Sbjct: 181 GLNVYDILCYDKCVVFKSILPKIEERL 207


>gi|329889130|ref|ZP_08267473.1| 50S ribosomal protein L4 [Brevundimonas diminuta ATCC 11568]
 gi|328844431|gb|EGF93995.1| 50S ribosomal protein L4 [Brevundimonas diminuta ATCC 11568]
          Length = 212

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 103/206 (50%), Positives = 142/206 (68%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++LSV  LDG+  G + +S+ +F +   +  +LAR + WQ  ++R G  K + R+E + T
Sbjct: 1   MKLSVIKLDGKAAGDVELSDAVFGISDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH S+   QF GG +AFGPV     ++LPKKVR+LALRHALS K  +
Sbjct: 61  GKKMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGYSLPKKVRALALRHALSSKAKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D++  KE KT  L   F  L  + ALII G +++ NF LAARNIP+I++LP  G
Sbjct: 121 GDLVVVDSVSVKEAKTASLRETFGKLGWTKALIIAGPEVETNFGLAARNIPHIDVLPNAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR  KLVL+K+A+EA+E RF
Sbjct: 181 LNVYDILRADKLVLTKAAVEAIEARF 206


>gi|302558993|ref|ZP_07311335.1| 50S ribosomal protein L4/L1 [Streptomyces griseoflavus Tu4000]
 gi|302476611|gb|EFL39704.1| 50S ribosomal protein L4/L1 [Streptomyces griseoflavus Tu4000]
          Length = 219

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  GE  G + +  +IF ++     ++ +V+  Q+   R G  K+K R EV  
Sbjct: 1   MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVID-NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            N I V+   +  +   TK   T F  +     L++   + D    L+ARN+P +++L  
Sbjct: 121 HNRIHVVSGVIEGETPSTKAARTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    +V +K+A E+ 
Sbjct: 181 GQLNTYDVLVSDDVVFTKAAFESF 204


>gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01]
 gi|256849182|ref|ZP_05554615.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US]
 gi|262047198|ref|ZP_06020156.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US]
 gi|293380378|ref|ZP_06626449.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1]
 gi|295692161|ref|YP_003600771.1| 50S ribosomal protein l4 [Lactobacillus crispatus ST1]
 gi|227861138|gb|EEJ68787.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01]
 gi|256713958|gb|EEU28946.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US]
 gi|260572443|gb|EEX29005.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US]
 gi|290923061|gb|EFD99992.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1]
 gi|295030267|emb|CBL49746.1| 50S ribosomal protein L4 [Lactobacillus crispatus ST1]
          Length = 205

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P + ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ND++V+D L     KTK LV+    L+    ++I     D N QL+ARN+  + ++PV G
Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNGLNADGKVLIVSD--DNNVQLSARNLTKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L + A++ +E+  
Sbjct: 179 LNVEDAVNYGKLILDQDAVKKIEEVL 204


>gi|312880371|ref|ZP_07740171.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260]
 gi|310783662|gb|EFQ24060.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260]
          Length = 208

 Score =  197 bits (502), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 96/206 (46%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +   N  G+  G   +S+ +F+       + +V+       R+G   +K R EV   
Sbjct: 1   MPRVKQVNFQGDVIGEFELSDAVFSAPVHAPAMHQVVVAHLANCRLGTHDTKDRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     + GGG A GP P      + KKVR LALR AL+ K   
Sbjct: 61  GRKPWRQKHTGRARQGSTRSPIWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D       KTK ++     +      ++   + D     +A NIP   +L V  
Sbjct: 121 EVLLVLDRFDLDAPKTKAMLAFLGKVQSGKKPLLVTHESDPRVHKSAANIPGAAVLHVDS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L   +L+++  A   +E+ F
Sbjct: 181 LNVYDLLHHDQLIVTAEAARKIEEVF 206


>gi|302388713|ref|YP_003824534.1| LSU ribosomal protein L4P [Thermosediminibacter oceani DSM 16646]
 gi|302199341|gb|ADL06911.1| LSU ribosomal protein L4P [Thermosediminibacter oceani DSM 16646]
          Length = 208

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 117/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ G+  G + +S+ +F ++ +  ++ +V+      +R+G + +K R+EV   
Sbjct: 1   MPKVALYNMQGQQVGEVELSDSVFGVEVKPEVMHQVVLNYLANQRVGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +R GG  FGP P    + LPKK++ LAL+ ALS K   
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPLWRKGGIVFGPKPRSYKYTLPKKLKRLALKSALSAKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+I+V+D L  +  KTK +V     L      +I     D N   +ARNIP +    V  
Sbjct: 121 NEIIVLDRLTMEAPKTKEMVKVLSNLKADTKSLIVLDASDVNVVKSARNIPGVTTTTVNT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   KL+++  A++ +E+ +
Sbjct: 181 LNVYDILNHDKLIMTMDAVKRVEEVY 206


>gi|297625783|ref|YP_003687546.1| 50S ribosomal protein L4 [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921548|emb|CBL56102.1| 50S ribosomal protein L4 [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 233

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 1/199 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N +G+  G + +  ++F  +    ++ +V+  Q    R G   +K R+EV+  G K
Sbjct: 7   IDVVNAEGKKAGSVELPGELFDAQANVPLMHQVVTAQLAAARQGTHSTKTRAEVSGGGKK 66

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRAR  S    Q+ GGG + GP P       PKK+ + ALR ALSD+     I
Sbjct: 67  PWRQKGTGRARQGSIRSPQWAGGGISHGPQPREYSQRTPKKMVATALRGALSDRAREGRI 126

Query: 124 MVIDNLV-SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
            V+   V   +  TK        L     +++   + D N  L+ RN+  ++++    +N
Sbjct: 127 HVVSEFVGGDKPSTKSAAKVIAGLGDYGRVLVVLERSDENNWLSMRNLIGVHVVSWDQLN 186

Query: 183 VYDILRCSKLVLSKSAIEA 201
            YD+L    +V S+SAI+A
Sbjct: 187 TYDVLLADAIVFSESAIKA 205


>gi|256844430|ref|ZP_05549916.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN]
 gi|256613508|gb|EEU18711.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN]
          Length = 205

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P + ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSRKLID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ND++V+D L     KTK LV+    L+    ++I     D N QL+ARN+  + ++PV G
Sbjct: 121 NDLIVLDKLTMSAPKTKELVSILNGLNADGKVLIVSD--DNNVQLSARNLTKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L + A++ +E+  
Sbjct: 179 LNVEDAVNYGKLILDQDAVKKIEEVL 204


>gi|116628964|ref|YP_814136.1| 50S ribosomal protein L4 [Lactobacillus gasseri ATCC 33323]
 gi|238853482|ref|ZP_04643860.1| ribosomal protein, L4/L1 family [Lactobacillus gasseri 202-4]
 gi|282852650|ref|ZP_06261992.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri
           224-1]
 gi|300362388|ref|ZP_07058564.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri
           JV-V03]
 gi|311111236|ref|ZP_07712633.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri
           MV-22]
 gi|122274038|sp|Q046C4|RL4_LACGA RecName: Full=50S ribosomal protein L4
 gi|116094546|gb|ABJ59698.1| LSU ribosomal protein L4P [Lactobacillus gasseri ATCC 33323]
 gi|238833922|gb|EEQ26181.1| ribosomal protein, L4/L1 family [Lactobacillus gasseri 202-4]
 gi|282556392|gb|EFB62012.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri
           224-1]
 gi|300353379|gb|EFJ69251.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri
           JV-V03]
 gi|311066390|gb|EFQ46730.1| ribosomal protein L4/L1 family protein [Lactobacillus gasseri
           MV-22]
          Length = 205

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G+  G + ++E+IF ++P + ++   +  Q   KR G S  K RS V   
Sbjct: 1   MANLEIIDQKGKSAGNVDLNEEIFGIEPNESVVFDAIIRQRAGKRQGTSAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKMDMPRKARRLAMKSVLSQKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++++D L  +  KTK L       ++S  +++     D+N QL+ +N+P + ++PV G
Sbjct: 121 KDLIILDQLTLEAPKTKELKAILDNANVSGKVLVVSD--DKNVQLSGKNLPKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KLVL++ AI+ +E+  
Sbjct: 179 LNVVDAVDYQKLVLTQDAIKRIEEVL 204


>gi|291549415|emb|CBL25677.1| LSU ribosomal protein L4P [Ruminococcus torques L2-14]
          Length = 206

 Score =  197 bits (501), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N++G++   I +++ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MAKVSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L   E KTK            N  ++     ++N +++A+NIP++       
Sbjct: 121 NKFIVVDELNFDEIKTKKFQAVLNN-LNVNKALVVLEDGNKNVEISAKNIPDVKTAHTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + ++ +K+ + A+E+ +
Sbjct: 180 INVYDILKYNTVIATKAVVAAIEEVY 205


>gi|227894521|ref|ZP_04012326.1| 50S ribosomal protein L4 [Lactobacillus ultunensis DSM 16047]
 gi|227863680|gb|EEJ71101.1| 50S ribosomal protein L4 [Lactobacillus ultunensis DSM 16047]
          Length = 205

 Score =  197 bits (501), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P   ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANLKVMDQNGKDSGEVTLNDKVFGIEPNDSVVFEAIIRQRAGKRQGTSKVKNRSVVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L     KTK LV+   +L+    ++I     D N QL+ARN+  + ++PV G
Sbjct: 121 KDLIVLDKLTMSAPKTKELVSMLSSLNADGKVLIVSD--DNNVQLSARNLTKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204


>gi|291166878|gb|EFE28924.1| 50S ribosomal protein L4/L1 [Filifactor alocis ATCC 35896]
          Length = 207

 Score =  197 bits (501), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 113/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N++GE    + +SE++F  +  + ++ +V++     KR+G   +K R+EV   
Sbjct: 1   MPTVDVLNINGEKVSEMELSENLFGAEINEHVVYQVVKNHLANKRVGTQSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S    Q++GGG  F P P    + +PKK+R LAL+  L+DK   
Sbjct: 61  GAKPWRQKGTGRARQGSIRSPQWKGGGVVFAPKPRDYSYTVPKKIRRLALKSVLTDKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D++   E KT+       AL +    ++           + RNI N+ +  V  
Sbjct: 121 GNLVVVDDINLTEWKTREFAKMLSALKVGKKALVVTKDNSPEVVRSGRNIKNVKIAFVGT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL  + LVL+K A+   E+ +
Sbjct: 181 MNVYDILNANTLVLTKDAVAKAEEVY 206


>gi|296168558|ref|ZP_06850362.1| 50S ribosomal protein L4 [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896621|gb|EFG76260.1| 50S ribosomal protein L4 [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 217

 Score =  197 bits (500), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 2/203 (0%)

Query: 1   MI-ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  ++ V+  DG+ +G I +  ++F       ++ +V+  Q    R G   +K R EV+ 
Sbjct: 1   MALKIDVKTPDGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGEVSG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  
Sbjct: 61  GGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYAQRTPKKMIAAALRGALSDRAR 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
           +  I  V + +  +   TK        L     ++I   + D     + RN+P +++L  
Sbjct: 121 NGRIHAVTEIVAGQTPSTKNARAFLGTLTDRKKVLIVIGRSDEAGAKSVRNLPGVHILTP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEA 201
             +N YD+L    +V S  A+ A
Sbjct: 181 DQLNTYDVLLSDDVVFSVEALNA 203


>gi|313897239|ref|ZP_07830783.1| 50S ribosomal protein L4 [Clostridium sp. HGF2]
 gi|312957960|gb|EFR39584.1| 50S ribosomal protein L4 [Clostridium sp. HGF2]
          Length = 209

 Score =  197 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +  G++   I++++ +F ++P Q  +   +  Q    R G   +K R+EV   
Sbjct: 1   MPKMVVLSQTGKELNEITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+RGGG  FGP P    + L KKVR LAL+ ALS+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPV 178
           N + V+D    +  KTK        ++     +    + +   N  L+ RNIP + +L  
Sbjct: 121 NAMSVVDKFELEAPKTKAFNQIIADINAPKKTLFVVSEGEDFENAFLSMRNIPTMMMLTA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            G+NVYDI+  +K+V +++A++ +E+  
Sbjct: 181 DGLNVYDIVNANKIVFTEAAVKDVEEAL 208


>gi|290958150|ref|YP_003489332.1| 50S ribosomal protein L4 [Streptomyces scabiei 87.22]
 gi|260647676|emb|CBG70781.1| 50S ribosomal protein L4 [Streptomyces scabiei 87.22]
          Length = 219

 Score =  197 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  GE  G + +  +IF ++     ++ +V+  Q+   R G  K+K R EV  
Sbjct: 1   MSTVDILSPAGEKTGSVELPAEIFGVEKVSIPLIHQVVVAQNAAARQGTHKTKTRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVID-NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            N I V+   +  +   TK   + F  +     L++   + D    L+ARN+P +++L  
Sbjct: 121 HNRIHVVSGVIEGENPSTKAAKSLFGKISERKNLLLVVERADEAAWLSARNLPQVHILEP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD++    +V ++ A+E+ 
Sbjct: 181 GQLNTYDVIVSDDVVFTQGALESF 204


>gi|195977209|ref|YP_002122453.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|226730727|sp|B4U501|RL4_STREM RecName: Full=50S ribosomal protein L4
 gi|195973914|gb|ACG61440.1| 50S ribosomal protein L4 [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 207

 Score =  197 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + +++ IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSTVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + +++L     KT        AL +   +++   + +    L+ARN+PN+ +     
Sbjct: 121 DKFVAVESLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVAVATAAT 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +V DI+   KL+++K AI  +E+  
Sbjct: 181 ASVLDIVSADKLLVTKEAISTIEEVL 206


>gi|309777134|ref|ZP_07672097.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915004|gb|EFP60781.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 209

 Score =  197 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +  G++   I++++ +F ++P Q  +   +  Q    R G   +K R+EV   
Sbjct: 1   MPKMVVLSQTGKELKEITLADTVFGIEPNQQCIFDAVIMQRASMRQGTHDTKNRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+RGGG  FGP P    + L KKVR LAL+ ALS+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRNYGYKLNKKVRRLALKSALSEKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPV 178
           N + V+D    +  KTK        ++     +    + +   N  L+ RNIP + +L  
Sbjct: 121 NAMGVVDKFELEAPKTKAFNQIVADINAPKKTLFVVSEGEDFENAFLSMRNIPTMMMLTA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            G+NVYDI+  +K+V +++A++ +E+  
Sbjct: 181 DGLNVYDIVNANKIVFTEAAVKDVEEAL 208


>gi|126724862|ref|ZP_01740705.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2150]
 gi|126706026|gb|EBA05116.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2150]
          Length = 206

 Score =  197 bits (500), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 90/205 (43%), Positives = 128/205 (62%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG+  G + ++ED+F L+ +  IL RV+R+Q  +++ G  K K RSEV Y+ 
Sbjct: 1   MKLDVIKLDGKKAGSVDLAEDLFGLEARADILHRVVRYQLAKRQAGTHKVKTRSEVKYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GP P    H L KK R+L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHAHDLNKKFRALGLRHALSAKAGAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D  V  + KT  L    + L    AL+IDG +++ NF  A+ NI  +++LP  G 
Sbjct: 121 QLVVLDEAVVADGKTGVLAKMVKELGWKRALVIDGAEVNANFAQASANIDGLDVLPSMGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL+   LV++K+ +EALE R 
Sbjct: 181 NVYDILKRDTLVVTKAGLEALEARL 205


>gi|320526870|ref|ZP_08028060.1| ribosomal protein L4/L1 family protein [Solobacterium moorei F0204]
 gi|320132838|gb|EFW25378.1| ribosomal protein L4/L1 family protein [Solobacterium moorei F0204]
          Length = 209

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 109/209 (52%), Gaps = 4/209 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N + +    I +S+ +F ++P Q  +   +       R G   +  R+EV+ T
Sbjct: 1   MAKIDVFNQEAKAVKSIELSDAVFGIEPNQQAMYDAILVYQAGLRQGTHATLTRAEVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+R GG AFGP P      L +KVR LALR ALS+K   
Sbjct: 61  GKKPFRQKGTGRARQGSTRATQWRHGGIAFGPQPRKYDFKLNRKVRQLALRSALSEKLQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF---QLAARNIPNINLLP 177
           + + V++NL   E KTK  V    A       +    + D +F    ++ RNIPN  ++ 
Sbjct: 121 SSLTVLENLSFDEIKTKKAVALMNAFGFDRKTLFV-AEADEDFDNAYVSMRNIPNALVVT 179

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
           V  +NVYDI+   K+V ++ A E   + F
Sbjct: 180 VSSLNVYDIVNADKVVFTEKAAEKAGEVF 208


>gi|315652353|ref|ZP_07905345.1| 50S ribosomal protein L4 [Eubacterium saburreum DSM 3986]
 gi|315485476|gb|EFU75866.1| 50S ribosomal protein L4 [Eubacterium saburreum DSM 3986]
          Length = 206

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +++ +F +   + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F P P      L KK + +AL+ AL+ +   
Sbjct: 61  GRKPWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D+    E KTK +             ++   + ++N  L+ RNI  +     + 
Sbjct: 121 NKFIVVDDFSMGEIKTKKMQQTLNN-LNVKKALVVCAENEKNTVLSVRNIYGVKAASPKT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V SK A++ +E+ +
Sbjct: 180 INVYDILKYNTVVASKDAVKTIEEVY 205


>gi|312899044|ref|ZP_07758428.1| ribosomal protein L4/L1 family protein [Megasphaera micronuciformis
           F0359]
 gi|310619829|gb|EFQ03405.1| ribosomal protein L4/L1 family protein [Megasphaera micronuciformis
           F0359]
          Length = 207

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S  N+ G   G + +++ +F ++  + ++ + +  Q   +R+G   +K R  V   
Sbjct: 1   MPKVSTYNIAGAQTGEMELNDSVFGVEVNEAVMRQAVLRQLANERLGTHATKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      +P+K R LA++ ALSDK  +
Sbjct: 61  GRKPWKQKGTGRARVGSTRSPLWVGGGTVFGPQPRSYEQKMPRKARRLAVKSALSDKVNT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++ V+D +V    KTK +V        S   ++     D      ARN+  +  +  + 
Sbjct: 121 NELFVLDEIVLAAPKTKEVVKVVDNFKFSGEKVLFITDGDEVMARCARNLQGVKSVSTEN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N++D+L  +KL ++KSA+  +E+  
Sbjct: 181 MNIFDLLHYTKLFITKSAVAKIEEVL 206


>gi|320009101|gb|ADW03951.1| ribosomal protein L4/L1e [Streptomyces flavogriseus ATCC 33331]
          Length = 216

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 103/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GRKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V     TK   T F  +   + L++   + D    L+ARN+P +++L    
Sbjct: 121 SRIHVVTGVVEGGISTKAAKTLFGKISERSNLLLVVERADEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++    +V +++A E+ 
Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202


>gi|167645579|ref|YP_001683242.1| 50S ribosomal protein L4 [Caulobacter sp. K31]
 gi|189029494|sp|B0T2C3|RL4_CAUSK RecName: Full=50S ribosomal protein L4
 gi|167348009|gb|ABZ70744.1| ribosomal protein L4/L1e [Caulobacter sp. K31]
          Length = 212

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 102/206 (49%), Positives = 135/206 (65%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V NLDG   G + + + IF +   +  IL RV+ WQ  ++R G  K + R+EV+ T
Sbjct: 1   MKLDVINLDGGKAGSVDLDDAIFGIADIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH S+  +QF GG KA GPV       LPKK+R++ALRHALS K  S
Sbjct: 61  GKKMYKQKGTGSARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRAMALRHALSSKAKS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+V+D  V  + KT  L   F  + L NAL+I G ++D NF+LAARNIPNI++LP  G
Sbjct: 121 GSIIVLDTAVLTDPKTAALRANFDKIGLKNALVIAGPEVDGNFKLAARNIPNIDVLPNAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LR   LVL+K A+EA+  RF
Sbjct: 181 LNVYDVLRRHTLVLTKDAVEAISARF 206


>gi|160914558|ref|ZP_02076773.1| hypothetical protein EUBDOL_00564 [Eubacterium dolichum DSM 3991]
 gi|158433716|gb|EDP12005.1| hypothetical protein EUBDOL_00564 [Eubacterium dolichum DSM 3991]
          Length = 209

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 114/208 (54%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V + +G++   I++++ +F ++P Q  +   +  Q    R G   +K R+EV+  
Sbjct: 1   MPKMVVLSQNGKELKEITLADSVFGIEPNQQCIFDAIVMQRASVRQGTHDTKNRTEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+RGGG  FGP P    + L KKVR LAL+  LS+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRATQWRGGGIVFGPTPRSYSYKLNKKVRRLALKSVLSEKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPV 178
           N + V+D     E KTK        ++     +    + +   N  L+ RNIP + +L  
Sbjct: 121 NAMSVVDKFELAEPKTKAFNQIIADINAPKKTLFVVSENEDFENAFLSMRNIPTMMMLTA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            GINVYDI+  +K+V +++A++ +E+  
Sbjct: 181 DGINVYDIVNANKIVFTEAAVKDVEEAL 208


>gi|282882504|ref|ZP_06291125.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B]
 gi|281297646|gb|EFA90121.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B]
          Length = 207

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N++G     I V+++IF     + ++  V++     +R G   +K RSEV   
Sbjct: 1   MAKIQMINIEGNPVSEIEVNDNIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  F   P    +  PKKVR LAL+  L+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++I+V+D L   E KTK +V   + +      +I     + N   +ARNI  +    V+ 
Sbjct: 121 SEIIVLDKLELNEIKTKTVVNILKDIKADKKALIVINDKNENIIRSARNIEGVKTEFVKN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+ + LV++K A++ LE+ F
Sbjct: 181 INVYDLLKYNSLVITKDALDTLEEVF 206


>gi|293402502|ref|ZP_06646637.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304016|gb|EFE45270.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 209

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +  G++   I++++ +F ++P Q  +   +  Q    R G   +K R+EV   
Sbjct: 1   MPKMVVLSQAGKELHEITLADTVFGIEPNQQCIFDAIVMQRASMRQGTHDTKNRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+RGGG  FGP P    + L KKVR LAL+  LS+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRATQWRGGGTVFGPTPRSYAYKLNKKVRRLALKSVLSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPV 178
           N + V+D    +  KTK        L+     +    + +   N  L+ RNIP++ +L  
Sbjct: 121 NAMSVVDKFELEAPKTKAFNEIIANLNAPRKTLFVVSEGEDFENAFLSMRNIPSMMMLTA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            G+NVYDI+  +K+V +++A++ +E+  
Sbjct: 181 DGLNVYDIVNANKIVFTEAAVKDVEEAL 208


>gi|227550721|ref|ZP_03980770.1| 50S ribosomal protein L4 [Enterococcus faecium TX1330]
 gi|257878726|ref|ZP_05658379.1| ribosomal protein L4 [Enterococcus faecium 1,230,933]
 gi|257881367|ref|ZP_05661020.1| ribosomal protein L4 [Enterococcus faecium 1,231,502]
 gi|257885635|ref|ZP_05665288.1| ribosomal protein L4 [Enterococcus faecium 1,231,501]
 gi|257888020|ref|ZP_05667673.1| ribosomal protein L4 [Enterococcus faecium 1,141,733]
 gi|257890585|ref|ZP_05670238.1| ribosomal protein L4 [Enterococcus faecium 1,231,410]
 gi|257893175|ref|ZP_05672828.1| ribosomal protein L4 [Enterococcus faecium 1,231,408]
 gi|257896361|ref|ZP_05676014.1| ribosomal protein L4 [Enterococcus faecium Com12]
 gi|257899335|ref|ZP_05678988.1| ribosomal protein L4 [Enterococcus faecium Com15]
 gi|258615210|ref|ZP_05712980.1| 50S ribosomal protein L4 [Enterococcus faecium DO]
 gi|261206994|ref|ZP_05921683.1| ribosomal protein L4 [Enterococcus faecium TC 6]
 gi|289565371|ref|ZP_06445821.1| 50S ribosomal protein L4/L1 [Enterococcus faecium D344SRF]
 gi|293379447|ref|ZP_06625591.1| ribosomal protein L4/L1 family protein [Enterococcus faecium PC4.1]
 gi|293553880|ref|ZP_06674486.1| ribosomal protein L4/L1 family [Enterococcus faecium E1039]
 gi|293562947|ref|ZP_06677414.1| ribosomal protein L4/L1 family [Enterococcus faecium E1162]
 gi|293567930|ref|ZP_06679271.1| ribosomal protein L4/L1 family [Enterococcus faecium E1071]
 gi|293570685|ref|ZP_06681735.1| ribosomal protein L4/L1 family [Enterococcus faecium E980]
 gi|294615392|ref|ZP_06695265.1| ribosomal protein L4/L1 family [Enterococcus faecium E1636]
 gi|294618319|ref|ZP_06697900.1| ribosomal protein L4/L1 family [Enterococcus faecium E1679]
 gi|294621079|ref|ZP_06700270.1| ribosomal protein L4/L1 [Enterococcus faecium U0317]
 gi|314937609|ref|ZP_07844935.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133a04]
 gi|314942892|ref|ZP_07849705.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133C]
 gi|314947972|ref|ZP_07851376.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0082]
 gi|314950889|ref|ZP_07853958.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133A]
 gi|314991463|ref|ZP_07856940.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133B]
 gi|314995016|ref|ZP_07860136.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133a01]
 gi|227180182|gb|EEI61154.1| 50S ribosomal protein L4 [Enterococcus faecium TX1330]
 gi|257812954|gb|EEV41712.1| ribosomal protein L4 [Enterococcus faecium 1,230,933]
 gi|257817025|gb|EEV44353.1| ribosomal protein L4 [Enterococcus faecium 1,231,502]
 gi|257821491|gb|EEV48621.1| ribosomal protein L4 [Enterococcus faecium 1,231,501]
 gi|257824074|gb|EEV51006.1| ribosomal protein L4 [Enterococcus faecium 1,141,733]
 gi|257826945|gb|EEV53571.1| ribosomal protein L4 [Enterococcus faecium 1,231,410]
 gi|257829554|gb|EEV56161.1| ribosomal protein L4 [Enterococcus faecium 1,231,408]
 gi|257832926|gb|EEV59347.1| ribosomal protein L4 [Enterococcus faecium Com12]
 gi|257837247|gb|EEV62321.1| ribosomal protein L4 [Enterococcus faecium Com15]
 gi|260078622|gb|EEW66324.1| ribosomal protein L4 [Enterococcus faecium TC 6]
 gi|289162861|gb|EFD10711.1| 50S ribosomal protein L4/L1 [Enterococcus faecium D344SRF]
 gi|291291686|gb|ADD91677.1| 50S ribosomal protein L4 [Enterococcus faecium]
 gi|291589515|gb|EFF21322.1| ribosomal protein L4/L1 family [Enterococcus faecium E1071]
 gi|291591766|gb|EFF23402.1| ribosomal protein L4/L1 family [Enterococcus faecium E1636]
 gi|291595413|gb|EFF26725.1| ribosomal protein L4/L1 family [Enterococcus faecium E1679]
 gi|291599315|gb|EFF30341.1| ribosomal protein L4/L1 [Enterococcus faecium U0317]
 gi|291601932|gb|EFF32178.1| ribosomal protein L4/L1 family [Enterococcus faecium E1039]
 gi|291605073|gb|EFF34540.1| ribosomal protein L4/L1 family [Enterococcus faecium E1162]
 gi|291609157|gb|EFF38429.1| ribosomal protein L4/L1 family [Enterococcus faecium E980]
 gi|292641970|gb|EFF60136.1| ribosomal protein L4/L1 family protein [Enterococcus faecium PC4.1]
 gi|313590742|gb|EFR69587.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133a01]
 gi|313593943|gb|EFR72788.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133B]
 gi|313596898|gb|EFR75743.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133A]
 gi|313598364|gb|EFR77209.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133C]
 gi|313642986|gb|EFS07566.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0133a04]
 gi|313645570|gb|EFS10150.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
           TX0082]
          Length = 207

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++ I+ L     KTK        L + + +++   + +    L+ARN+PN++++    
Sbjct: 121 NNLVAIEGLNFDAPKTKEFKQVLANLSIDSKVLVVLEKGNDFAALSARNLPNVSVVTSDN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++  +K++ +++A+  +E+  
Sbjct: 181 VSVLDVVSNTKVLATQTALTQIEEVL 206


>gi|114799746|ref|YP_761528.1| 50S ribosomal protein L4 [Hyphomonas neptunium ATCC 15444]
 gi|123128466|sp|Q0BYB5|RL4_HYPNA RecName: Full=50S ribosomal protein L4
 gi|114739920|gb|ABI78045.1| ribosomal protein L4 [Hyphomonas neptunium ATCC 15444]
          Length = 214

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 130/206 (63%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL+V+ L G+  G I + + IF + + +  IL R +RWQ  R++ G  K+K RSEV  T
Sbjct: 1   MELAVKTLAGDAAGNIDLDDAIFGIDEIRGDILQRTVRWQLARRQAGTHKAKSRSEVNRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K   QKG+G ARH S++   F GGG A GP      H LPKK+R +AL HALS K   
Sbjct: 61  TKKSIKQKGSGGARHGSRNAPIFVGGGIAHGPRVRSHAHDLPKKIRKMALAHALSSKAKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + IMVID       KTK L+  F+ L + NALII G +++ NF  AARNIPNI++LPV G
Sbjct: 121 SSIMVIDTCELDSPKTKGLIQAFKDLGIENALIISGTEVNENFARAARNIPNIDVLPVAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR   LV++K A E ++ RF
Sbjct: 181 LNVYDILRRRTLVITKEAAEGIKARF 206


>gi|254449666|ref|ZP_05063103.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 238]
 gi|198264072|gb|EDY88342.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 238]
          Length = 205

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++     LDG+  G + + E IF L+P+  IL RV+RWQ    + G  K K RSEV Y+ 
Sbjct: 1   MKADAIKLDGKAAGSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D++  K+ KT  L  +  AL      +I    ++ NF +AARNI  IN LPV G 
Sbjct: 121 ELVIVDSIDMKDAKTSALAKQVGALG-WKRCLIIDATVNENFAVAARNITTINALPVMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K+ +EALE R K
Sbjct: 180 NVYDILRSDTLVLTKAGVEALEARLK 205


>gi|330718971|ref|ZP_08313571.1| 50S ribosomal protein L4 [Leuconostoc fallax KCTC 3537]
          Length = 207

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 110/203 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   DG     I +++ +F ++P   ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVAVLKQDGSQATEIELNDAVFGVEPNNAVVTDAVLMQRAALRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + + +K   LAL+ ALS K   
Sbjct: 61  GKKPWKQKGTGRARQGSTRSPQWRGGGVVFGPTPRSYAYRINRKSYQLALKSALSQKVSE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++V+D L  +  KTK        L + + +++   + + N  L+ARN+ N+ ++  +G
Sbjct: 121 SKLLVVDALSFETPKTKAFGQVLANLSVDSKVLVIVDEDNDNAILSARNLNNVQVMTAKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           INV D++   KLV+ +SAIE ++
Sbjct: 181 INVLDVVNADKLVIVQSAIEEIQ 203


>gi|260558288|ref|ZP_05830484.1| ribosomal protein L4 [Enterococcus faecium C68]
 gi|260075462|gb|EEW63768.1| ribosomal protein L4 [Enterococcus faecium C68]
          Length = 207

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 114/206 (55%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS+K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++ I+ L     KTK        L + + +++   + +    L+ARN+PN++++    
Sbjct: 121 NNLVAIEGLKFDAPKTKEFKQVLANLSIDSKVLVVLEKGNDFAALSARNLPNVSVVTSDN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++  +K++ +++A+  +E+  
Sbjct: 181 VSVLDVVSNTKVLATQTALTQIEEVL 206


>gi|260102356|ref|ZP_05752593.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075]
 gi|260083800|gb|EEW67920.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075]
 gi|328463365|gb|EGF35038.1| 50S ribosomal protein L4 [Lactobacillus helveticus MTCC 5463]
          Length = 205

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P + ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L     KTK LV+   +L++   ++I     D N QL+ARN+  +  +PV G
Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIVSD--DNNVQLSARNLAKVKAVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204


>gi|304321441|ref|YP_003855084.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503]
 gi|303300343|gb|ADM09942.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503]
          Length = 220

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/205 (41%), Positives = 124/205 (60%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V  LD    G + + +DIF L+P+  IL R + WQ  +++ G  K+K R EV  T 
Sbjct: 1   MQIDVLTLDASKAGDLDLRDDIFGLEPRADILHRYVVWQQAKRQQGTHKAKERGEVTGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH ++   QF GGGKA GP      H LPKKVR LALRHALS K  + 
Sbjct: 61  KKFVRQKGSGGARHGNRKAPQFVGGGKAHGPRVRSHAHDLPKKVRRLALRHALSAKQGAA 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++ID     + KTK L  + + L + N+ ++    +D  F  AARN+  +++LPV G 
Sbjct: 121 ELIIIDEATVADVKTKVLAEKLQKLGVRNS-LVIDQSVDEGFARAARNLDGVDVLPVIGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDILR  KL+L+++A+E L  R 
Sbjct: 180 NVYDILRHDKLILTRAAVEGLYARL 204


>gi|220930966|ref|YP_002507874.1| ribosomal protein L4/L1e [Halothermothrix orenii H 168]
 gi|254803739|sp|B8D0C5|RL4_HALOH RecName: Full=50S ribosomal protein L4
 gi|219992276|gb|ACL68879.1| ribosomal protein L4/L1e [Halothermothrix orenii H 168]
          Length = 209

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++  +  G   G I +++++F  +  + ++ +V+  Q    R G + +K R EV+  
Sbjct: 1   MPQVAKYDTTGNRVGDIDLADNVFNEEVNEHVVHQVVTAQLATMRRGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     + GGG  FGP P   +  +PKKV+ LALR  LS K  +
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPLWVGGGIVFGPRPRKHIKKVPKKVKKLALRSILSYKSQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++++D L     KTK +V            ++I     D N  L+ARNIP +  L V 
Sbjct: 121 EELIILDELKFDTPKTKQVVELLSNLNLEGKKVLIILPDKDANIYLSARNIPGVKTLVVD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N +D+L    +V+S+ A++ +E+  
Sbjct: 181 ALNAFDLLNNDCIVMSEEAVKRVEEVL 207


>gi|315037531|ref|YP_004031099.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112]
 gi|325956004|ref|YP_004286614.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC]
 gi|312275664|gb|ADQ58304.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112]
 gi|325332569|gb|ADZ06477.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC]
 gi|327182827|gb|AEA31274.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1118]
          Length = 205

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P   ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANLKVMDQNGKDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ND++V+D L     KTK LV+   +L+    ++I     D N QL+ARN+  +  +PV G
Sbjct: 121 NDLIVLDKLTMSAPKTKELVSMLNSLNADGKVLIVTD--DNNVQLSARNLAKVKAVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+LS+ A++ +E+  
Sbjct: 179 LNVEDAVNYGKLILSQDAVKKIEEVL 204


>gi|90020608|ref|YP_526435.1| 50S ribosomal protein L4 [Saccharophagus degradans 2-40]
 gi|109893634|sp|Q21M56|RL4_SACD2 RecName: Full=50S ribosomal protein L4
 gi|89950208|gb|ABD80223.1| LSU ribosomal protein L4P [Saccharophagus degradans 2-40]
          Length = 204

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +ELS+    G   G +SVSE  F  +  Q ++ + +       R G    K R+ V+  G
Sbjct: 1   MELSIATPQGAK-GTVSVSEAAFGREFNQDLVHQAVVAFMAGARQGTKAQKNRAAVSGGG 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      L KK+   A+R  LS+     
Sbjct: 60  KKPWRQKGTGRARAGTIRSPLWRSGGVTFAAEPRDHSQKLNKKMYRAAIRCILSELARQE 119

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV +    DL++  +I G  +  N  LAARN+  +++  V G+
Sbjct: 120 RLVVVEEFDLDAPKTKDLVQKLAQFDLADV-LIIGEDVSENLYLAARNLHKVDVRDVNGL 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++R  K+V++ +A++ LE+  
Sbjct: 179 DPVSLIRFDKVVVTVAALKKLEEVL 203


>gi|144900885|emb|CAM77749.1| 50S ribosomal protein L4 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 205

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 93/206 (45%), Positives = 131/206 (63%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V +LD +  G I +S+D+F L  +  +L R++ +Q  ++R G  K+KG SE++ T 
Sbjct: 1   MKTKVISLDNQSVGEIDLSDDVFGLAVRNDLLHRMVSYQLSKRRSGTHKTKGISEISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKG GRAR  S   +QFRGG   FGPV       +PKKVR LAL+ ALS K    
Sbjct: 61  KKPFNQKGGGRARQGSLRSAQFRGGATIFGPVVRSHAFDMPKKVRKLALKVALSAKAAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN  +   KTK L  +F+AL  ++ L+IDG  +D NF LA+RNIP++++LP  G 
Sbjct: 121 KLVVLDNATAAAPKTKALAAQFKALGWASVLVIDGA-VDGNFALASRNIPHVDVLPEVGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K A+ ALE R K
Sbjct: 180 NVYDILRRDTLVLTKDAVAALEARLK 205


>gi|240167704|ref|ZP_04746363.1| 50S ribosomal protein L4 [Mycobacterium kansasii ATCC 12478]
          Length = 225

 Score =  196 bits (498), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V+   G+ +G I +  ++F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 7   KIDVKTPAGKVEGSIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 66

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  
Sbjct: 67  KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 126

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  +   TK   T    L     L++   + D     + RN+P +++L    +
Sbjct: 127 IHAVTELVAGQTPSTKSAKTFLATLTDRKQLLVVIGRDDETAAKSVRNLPGVHVLSPDQL 186

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+LR   +V S +A+ A
Sbjct: 187 NTYDVLRADDVVFSVAALNA 206


>gi|239943578|ref|ZP_04695515.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998]
 gi|239990031|ref|ZP_04710695.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 11379]
 gi|291447045|ref|ZP_06586435.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998]
 gi|291349992|gb|EFE76896.1| 50S ribosomal protein L4 [Streptomyces roseosporus NRRL 15998]
          Length = 216

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 101/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V     TK   +    +     L++   + D    L+ARN+P +++L    
Sbjct: 121 SRIHVVTGVVEGAASTKAAKSLLGKISERQNLLLVVDRADEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++    +V +++A E+ 
Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202


>gi|254438218|ref|ZP_05051712.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307]
 gi|198253664|gb|EDY77978.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307]
          Length = 205

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++     LDG+  G + + E IF L+P+  IL RV+RWQ    + G  K K RSEV Y+ 
Sbjct: 1   MKADAIKLDGKAAGSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH ++S   FRGGG   GP P    H L KK R L LRHALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++DN+  K+ KT  L     AL      +I    ++ +F +AARNI +IN LPV G 
Sbjct: 121 ELVIVDNIDIKDAKTSALAKTVGALG-WKRCLIIDATVNEDFAVAARNITSINALPVMGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   LVL+K+ +EALE R K
Sbjct: 180 NVYDILRSDTLVLTKAGVEALEARLK 205


>gi|331004122|ref|ZP_08327602.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str.
           F0167]
 gi|330411532|gb|EGG90942.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str.
           F0167]
          Length = 206

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++ G I +++ +F +   + ++   +  Q   KR G  K+K RSEV+  
Sbjct: 1   MANISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q++GGG  F P P      L KK + +AL+ AL+ +   
Sbjct: 61  GRKPWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D+    E KTK +             ++   + ++N  L+ RNI  +     + 
Sbjct: 121 NKFIVVDDFAMSEIKTKKMQQTLNN-LNVKKALVVCAENEKNTVLSVRNIYGVKAASPKT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYDIL+ + +V SK A++ +E+ +
Sbjct: 180 INVYDILKYNTVVASKDAVKTIEEVY 205


>gi|21223083|ref|NP_628862.1| 50S ribosomal protein L4 [Streptomyces coelicolor A3(2)]
 gi|256785822|ref|ZP_05524253.1| 50S ribosomal protein L4 [Streptomyces lividans TK24]
 gi|289769714|ref|ZP_06529092.1| 50S ribosomal protein L4/L1 [Streptomyces lividans TK24]
 gi|46577292|sp|Q9L0D9|RL4_STRCO RecName: Full=50S ribosomal protein L4
 gi|7321293|emb|CAB82071.1| 50S ribosomal protein L4 [Streptomyces coelicolor A3(2)]
 gi|289699913|gb|EFD67342.1| 50S ribosomal protein L4/L1 [Streptomyces lividans TK24]
          Length = 219

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 105/204 (51%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  GE  G + +  +IF ++     ++ +V+  Q+   R G  K+K R EV  
Sbjct: 1   MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVID-NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            N I V+   +  +   TK   T F  +     L++   + D    L+ARN+P I++L  
Sbjct: 121 HNRIHVVTGVIEGENPSTKAARTLFGKISERKNLLLVVDRADEAAWLSARNLPQIHILEP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    +V +++A E+ 
Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204


>gi|300814627|ref|ZP_07094878.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511246|gb|EFK38495.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 207

 Score =  196 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N++G     I V+++IF     + ++  V++     +R G   +K RSEV   
Sbjct: 1   MAKIQMINIEGNPVSEIEVNDNIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  F   P    +  PKKVR LAL+  L+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++I+V+D L   E KTK +V   + +      +I     + N   ++RNI  +    V+ 
Sbjct: 121 SEIIVLDKLELNEIKTKTVVNILKDIKADKKALIVINDKNENIIRSSRNIEGVKTEFVKN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+ + LV++K A++ LE+ F
Sbjct: 181 INVYDLLKYNSLVITKDALDTLEEVF 206


>gi|323465825|gb|ADX69512.1| 50S ribosomal protein L4 [Lactobacillus helveticus H10]
          Length = 205

 Score =  196 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P + ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETVIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L     KTK LV+   +L++   ++I     D N QL+ARN+  +  +PV G
Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIVSD--DNNVQLSARNLAKVKAVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204


>gi|166031658|ref|ZP_02234487.1| hypothetical protein DORFOR_01358 [Dorea formicigenerans ATCC
           27755]
 gi|166028635|gb|EDR47392.1| hypothetical protein DORFOR_01358 [Dorea formicigenerans ATCC
           27755]
          Length = 206

 Score =  196 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++G++   I +S+ +F ++  + ++   +  Q    R G  K+K RSEV+  
Sbjct: 1   MANVSVYNIEGKEVETIELSDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+ GGG  F PVP      + KK +  AL+ AL+ +   
Sbjct: 61  GRKPWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D+L   E KTK +    +     +  ++     + N +L+A+NI  +       
Sbjct: 121 NKFIVVDSLTFDEIKTKNVANALKN-LNVSKALVVLEDGNVNAELSAKNIAGVKTAKTNT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+++ + ++ +K+A++A+E+ +
Sbjct: 180 INVYDVMKYNTVIATKAAVKAIEEVY 205


>gi|218282170|ref|ZP_03488469.1| hypothetical protein EUBIFOR_01051 [Eubacterium biforme DSM 3989]
 gi|218216849|gb|EEC90387.1| hypothetical protein EUBIFOR_01051 [Eubacterium biforme DSM 3989]
          Length = 209

 Score =  196 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N  G   G I +++ +F ++P Q  +   L  Q   +R G + +KGRSEV+  
Sbjct: 1   MATIDVINQTGAVVGSIELNDAVFGIEPHQQAMYDALVMQMASRRQGTADTKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S   +QFRGGG  FG  P    + + KKVR LA++ ALS+K   
Sbjct: 61  GRKPYRQKGTGRARQGSIRATQFRGGGTVFGATPRNYAYRINKKVRRLAVKSALSEKVQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR--NFQLAARNIPNINLLPV 178
               V+D     E KTK  V+   A+      +      +   N  L+ARNI    ++  
Sbjct: 121 TAFSVLDKFEIAEPKTKTFVSIIEAIQAPKKTLFVVADSEEATNVYLSARNIAGATVMAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             IN YD++  +K+V++ +A++ +E+  
Sbjct: 181 SAINTYDLVNANKVVMTSAAVKQVEEAL 208


>gi|121602068|ref|YP_988968.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583]
 gi|121602137|ref|YP_988998.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583]
 gi|120614245|gb|ABM44846.1| ribosomal protein L4 [Bartonella bacilliformis KC583]
 gi|120614314|gb|ABM44915.1| ribosomal protein L4 [Bartonella bacilliformis KC583]
          Length = 206

 Score =  196 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 120/206 (58%), Positives = 152/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG+  G +SVSE +F L P++ IL RV+RWQ  R++ G  K +GRS+++ TG
Sbjct: 1   MDLIIKTLDGKKTGELSVSEHVFGLVPREDILQRVVRWQLARRQKGTHKVQGRSDISRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARHSS    QFRGGGKA GPV     H LPKK R+L LR ALS KF +N
Sbjct: 61  AKMYKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHGLPKKSRALGLRLALSAKFKAN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++VID    ++ KTK L T F  L  +NAL+I G ++D NF  AA NIPNI++LP+QGI
Sbjct: 121 DLIVIDEFNLQDPKTKVLATNFSKLGFNNALLIGGKEIDVNFFRAASNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR SKLVLSK A+EALE+RFK
Sbjct: 181 NVYDILRRSKLVLSKKAVEALEERFK 206


>gi|254470116|ref|ZP_05083520.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062]
 gi|211960427|gb|EEA95623.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062]
          Length = 205

 Score =  196 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 105/205 (51%), Positives = 145/205 (70%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+ L G+  G I+VS++IF L+P+  ++ RV+RWQ  +++ G  KS GRSEV  T 
Sbjct: 1   MELEVKTLGGKAAGSITVSDEIFGLEPRIDLIQRVVRWQLAKRQAGTHKSLGRSEVNGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH ++   QFRGGGKAFGPV     H LPKKVR+L L+HALS K  S 
Sbjct: 61  KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPVVREHAHDLPKKVRALGLKHALSAKAASG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++ ++++  + E KTK L  +  +L L++AL +DG ++D NF LA RNIP +++LPVQGI
Sbjct: 121 NLYIVEDAKAAEAKTKALKEQLGSLGLTSALFVDGAEVDANFGLATRNIPLVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDILR   LVL+K+A+ ALE+RF
Sbjct: 181 NVYDILRRDTLVLTKAAVAALEERF 205


>gi|114771268|ref|ZP_01448688.1| 50S ribosomal protein L4 [alpha proteobacterium HTCC2255]
 gi|114548193|gb|EAU51080.1| 50S ribosomal protein L4 [alpha proteobacterium HTCC2255]
          Length = 206

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 126/206 (61%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ +V  LD +  G I + + +F L+P+  IL RV+R+Q  +++ G  K K RSE +Y+ 
Sbjct: 1   MKANVIKLDAKSAGSIDLDDSVFGLEPRADILHRVVRYQLAKRQAGTHKVKTRSETSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH  ++   FRGGG   GP      H L KK R L L+HALS K  + 
Sbjct: 61  KKIYNQKGTGGARHGDRNAPIFRGGGVYKGPKVRSHAHDLTKKFRKLGLKHALSAKATAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VID++ +K  KT  L      L     LIIDG  ++ NF LA+RNI  +++LP  G 
Sbjct: 121 ELIVIDSVEAKTSKTADLAKVVTNLGWKKVLIIDGTDVNENFLLASRNIDGLDILPSAGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDIL+ + LVL+K+  EALE R K
Sbjct: 181 NVYDILKSNTLVLTKAGAEALEARLK 206


>gi|329938231|ref|ZP_08287682.1| 50S ribosomal protein L4 [Streptomyces griseoaurantiacus M045]
 gi|329302720|gb|EGG46610.1| 50S ribosomal protein L4 [Streptomyces griseoaurantiacus M045]
          Length = 219

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  GE  G + +  +IF ++     ++ +V+  Q+   R G  K+K R EV  
Sbjct: 1   MSTVDILSPAGEKTGSVELPAEIFGVEKISIPLIHQVVVAQNAAARQGTHKTKRRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            + I V+  +V  +   TK   T F  +     L++   + D    L+ARN+P +++L  
Sbjct: 121 HDRIHVVTGVVEGETASTKAARTLFGKISERKNLLLVIDRADEAAWLSARNLPQVHILEP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    +V +++A E+ 
Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204


>gi|15828001|ref|NP_302264.1| 50S ribosomal protein L4 [Mycobacterium leprae TN]
 gi|221230478|ref|YP_002503894.1| 50S ribosomal protein L4 [Mycobacterium leprae Br4923]
 gi|3122749|sp|O32982|RL4_MYCLE RecName: Full=50S ribosomal protein L4
 gi|254803747|sp|B8ZSB8|RL4_MYCLB RecName: Full=50S ribosomal protein L4
 gi|2344834|emb|CAB11436.1| ribosomal protein L4 [Mycobacterium leprae]
 gi|13093554|emb|CAC30816.1| 50S ribosomal protein L4 [Mycobacterium leprae]
 gi|219933585|emb|CAR71958.1| 50S ribosomal protein L4 [Mycobacterium leprae Br4923]
          Length = 230

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/199 (32%), Positives = 95/199 (47%), Gaps = 1/199 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V+  DG+  G I +  ++F       ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 13  KIDVKTPDGKVDGTIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 72

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP         PKK+ + ALR ALSD+  +  
Sbjct: 73  KPYRQKGTGRARQGSMRAPQFTGGGIVHGPKLRDYSQRTPKKMIAAALRGALSDRARNGR 132

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +V K   TK        L     +++   + D     + RN+P ++LL    +
Sbjct: 133 IHAVTELVVGKTPSTKSAKEFLGTLTDRKQVLVVIGRSDETGAKSVRNLPGVHLLSPDQL 192

Query: 182 NVYDILRCSKLVLSKSAIE 200
           N YD+LR   LV S  A+ 
Sbjct: 193 NTYDVLRADDLVFSVEALN 211


>gi|182436626|ref|YP_001824345.1| 50S ribosomal protein L4 [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326777248|ref|ZP_08236513.1| ribosomal protein L4/L1e [Streptomyces cf. griseus XylebKG-1]
 gi|178465142|dbj|BAG19662.1| putative 50S ribosomal protein L4 [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657581|gb|EGE42427.1| ribosomal protein L4/L1e [Streptomyces cf. griseus XylebKG-1]
          Length = 216

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 101/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVDLPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V     TK   T    +     L++   + D    L+ARN+P +++L    
Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLLGKISERQNLLLVVDRADEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++    +V +++A E+ 
Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202


>gi|256827415|ref|YP_003151374.1| 50S ribosomal protein L4P [Cryptobacterium curtum DSM 15641]
 gi|256583558|gb|ACU94692.1| LSU ribosomal protein L4P [Cryptobacterium curtum DSM 15641]
          Length = 207

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 104/206 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V+++ G+   V  ++  +F ++P   ++ +V+R Q    R G   +  R +V   
Sbjct: 1   MANIEVKDVSGKKVEVRDLNAGVFGIEPNVHVMHQVVRAQRASWRQGTHDTLTRGQVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      +  K   LA+R ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPHPRSYAFRVNNKEVKLAMRSALSAKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++ V+D+   +E KTK      +AL ++    +     D N  LA RN+PN+ ++PV  
Sbjct: 121 GELFVVDSFGFEEPKTKSAAAALKALGITGRTTLVIGNEDVNTYLAFRNLPNVEVIPVMA 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            N YD +    L+ +  A+  +E+  
Sbjct: 181 GNTYDFVNNKALIFTAEALSRIEEVL 206


>gi|256618379|ref|ZP_05475225.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 4200]
 gi|256597906|gb|EEU17082.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 4200]
          Length = 207

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q      G    K RS V   
Sbjct: 1   MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLGQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LSDK   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++ ++ L     KTK        L +   +++     +    L+ARN+PN++++    
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D++  +K++ +++A+  +E+  
Sbjct: 181 VSVLDVVSANKVLATQTALTQIEEVL 206


>gi|223983922|ref|ZP_03634082.1| hypothetical protein HOLDEFILI_01363 [Holdemania filiformis DSM
           12042]
 gi|223964114|gb|EEF68466.1| hypothetical protein HOLDEFILI_01363 [Holdemania filiformis DSM
           12042]
          Length = 209

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/208 (36%), Positives = 111/208 (53%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L+V NL+ ++   I ++E +F ++P Q ++   L  Q    R G   +K R EV+  
Sbjct: 1   MPKLNVYNLEAKEIREIELAEAVFGIEPNQQVMFDALIMQRANMRQGTHDTKSRHEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG AFGP P    + L +KVR LALR  LS+K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGIAFGPTPRSYAYRLNRKVRRLALRSLLSEKVIE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPV 178
           N+++V+D L     KTK  V    A       +      +   N  ++ RNIPN  LL V
Sbjct: 121 NNLVVVDALKFDAIKTKEFVKVMDAFKFEGKTLFVADIAEDFDNAFMSLRNIPNAALLTV 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           + +N +DI    KLV++++A     + F
Sbjct: 181 EELNAFDIANAQKLVMTEAAANKAGEVF 208


>gi|161506874|ref|YP_001576828.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571]
 gi|172048368|sp|A8YXK6|RL4_LACH4 RecName: Full=50S ribosomal protein L4
 gi|160347863|gb|ABX26537.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571]
          Length = 205

 Score =  195 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V + +G+D G +++++ +F ++P + ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANLKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            D++V+D L     KTK LV+   +L++   ++I     D N QL+ARN+  +  +PV G
Sbjct: 121 KDLIVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIVSD--DNNVQLSARNLAKVKAVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KL+L++ A++ +E+  
Sbjct: 179 LNVEDAVNYGKLILTQDAVKKIEEVL 204


>gi|261367802|ref|ZP_05980685.1| ribosomal protein L4/L1 family protein [Subdoligranulum variabile
           DSM 15176]
 gi|282570600|gb|EFB76135.1| ribosomal protein L4/L1 family protein [Subdoligranulum variabile
           DSM 15176]
          Length = 206

 Score =  195 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +++G+    + +S+ +F + P +  +   +      +R G   +K R EV   
Sbjct: 1   MAQFDVVDMNGKKVSTVELSDAVFGITPNEKAVHEAVVNFLANQRQGTQNTKIRKEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    + + KKV+ LAL  ALSDK  +
Sbjct: 61  GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYYYTINKKVKRLALLSALSDKAAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++++D + +   KTK +V    A+      +I    LD  F  +A NIP +      G
Sbjct: 121 GNLIIVDKIAADAYKTKTVVAFLAAVGAGKKNLIVNDALDEKFVKSAANIPGVKT-AATG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD++   KL+LS  A + LE+ +
Sbjct: 180 VNTYDVVNADKLILSVDAAKKLEEVY 205


>gi|255635327|gb|ACU18017.1| unknown [Glycine max]
          Length = 312

 Score =  195 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 115/202 (56%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   EDKG +    D+F L  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 104 IPVTNFHNEDKGYMVFPGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 163

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRARH S    QFRGG    GP P      + KKVR L L+ ALS +     +
Sbjct: 164 PWNQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKVNKKVRCLGLKIALSARAAEGKL 223

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183
           +V ++L     KTK +V  +  ++ +  L++    +D   +L+ +N+  +N+LP  G+NV
Sbjct: 224 LVFEDLEVPTHKTKNIVNYYNQMEDTKKLLLVDGTIDEKLKLSTQNLHYVNVLPSIGLNV 283

Query: 184 YDILRCSKLVLSKSAIEALEDR 205
           Y IL    LV+S++A+  + +R
Sbjct: 284 YSILLHDTLVMSRAAVTKIVER 305


>gi|134103263|ref|YP_001108924.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338]
 gi|291007944|ref|ZP_06565917.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338]
 gi|166990952|sp|A4FPM4|RL4_SACEN RecName: Full=50S ribosomal protein L4
 gi|133915886|emb|CAM05999.1| 50S ribosomal protein L4 [Saccharopolyspora erythraea NRRL 2338]
          Length = 228

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 1/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           + L VR  DG+  G + +  +IF ++    ++ +V+  Q    R G   +K R +V+  G
Sbjct: 3   VTLDVRTPDGKTDGTVELPAEIFDVQANIALMHQVVVAQLAAGRQGTHATKTRGQVSGGG 62

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    QF GGG   GP P       PKK++  ALR ALSD+  + 
Sbjct: 63  KKPYRQKGTGNARQGSIRAPQFTGGGTVHGPQPRDYSQRTPKKMKVAALRGALSDRVRAG 122

Query: 122 DIMVIDNLV-SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + V+ ++V  ++  TK   T  R    +  +++   + +    L+ RN+ N++L+    
Sbjct: 123 QLHVVSHVVGGEQPSTKQARTAVRTWTEAKRVLVVLNKSEETSWLSLRNLQNVHLIDPSQ 182

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +K+A E  
Sbjct: 183 LNTYDVLVNDDVVFTKAAFERF 204


>gi|206901882|ref|YP_002250702.1| ribosomal protein L4/L1 family [Dictyoglomus thermophilum H-6-12]
 gi|206740985|gb|ACI20043.1| ribosomal protein L4/L1 family [Dictyoglomus thermophilum H-6-12]
          Length = 209

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MI++ V N   E  G I + E++F ++ +  +    +       R G   +K R EV  +
Sbjct: 1   MIQVPVYNQKAEKVGEIELKEELFGVEKRPDLFYTCVVMHLANGRQGTHSTKRRGEVNRS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QKGTG AR   +    + GGG+ FGP P    + +PKK+R LA+R ALS K   
Sbjct: 61  GRKVWPQKGTGHARQGDRKAPHWVGGGRPFGPKPRDYSYKIPKKMRRLAIRSALSTKLQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++++D +   + KTK LV          + ++I     D N + AA N+  +  +   
Sbjct: 121 NALIILDKIELSQPKTKELVNILNNFGLADSKVLIGVPAKDENLKRAAMNLEKVKTMIAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NVYD+L+   L+L+  AI  LE+ F
Sbjct: 181 VLNVYDLLKYDYLILTVDAIPVLEEAF 207


>gi|302553543|ref|ZP_07305885.1| ribosomal protein L4/L1 [Streptomyces viridochromogenes DSM 40736]
 gi|302471161|gb|EFL34254.1| ribosomal protein L4/L1 [Streptomyces viridochromogenes DSM 40736]
          Length = 218

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  G+  G + +  +IF ++     ++ +V+  Q    R G  K+K R EV  
Sbjct: 1   MSTVDILSPAGDKAGSVELPAEIFDVEKVSIPLIHQVVVAQLAAARQGTHKTKTRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            N I V+  +V  +   TK   T F  +     L++   + D    L+ARN+P +++L  
Sbjct: 121 HNRIHVVSGVVEGENPSTKSAKTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    +V +++A E+ 
Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204


>gi|108797987|ref|YP_638184.1| 50S ribosomal protein L4 [Mycobacterium sp. MCS]
 gi|119867083|ref|YP_937035.1| 50S ribosomal protein L4 [Mycobacterium sp. KMS]
 gi|126433649|ref|YP_001069340.1| 50S ribosomal protein L4 [Mycobacterium sp. JLS]
 gi|122977349|sp|Q1BDA6|RL4_MYCSS RecName: Full=50S ribosomal protein L4
 gi|166234689|sp|A3PVC2|RL4_MYCSJ RecName: Full=50S ribosomal protein L4
 gi|166234690|sp|A1UBN7|RL4_MYCSK RecName: Full=50S ribosomal protein L4
 gi|108768406|gb|ABG07128.1| LSU ribosomal protein L4P [Mycobacterium sp. MCS]
 gi|119693172|gb|ABL90245.1| LSU ribosomal protein L4P [Mycobacterium sp. KMS]
 gi|126233449|gb|ABN96849.1| LSU ribosomal protein L4P [Mycobacterium sp. JLS]
          Length = 219

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 2/203 (0%)

Query: 1   MIE-LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M   + V+   G   G + +  ++F ++    ++ +V+  Q   KR G   +K R EV+ 
Sbjct: 1   MATTIEVKTPAGTTDGSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIAAALRGALSDRAR 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
           +  I  V + +  +   TK        L     +++   + D   + + RN+P ++++  
Sbjct: 121 NGRIHAVTELVEGQTPSTKSAKAFLSTLTERKQVLVVIGRADETSERSVRNLPGVHIISP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEA 201
             +N YD+L+   +V S  A+ A
Sbjct: 181 DQLNTYDVLKADDVVFSVEALNA 203


>gi|242278659|ref|YP_002990788.1| 50S ribosomal protein L4 [Desulfovibrio salexigens DSM 2638]
 gi|259491552|sp|C6C186|RL4_DESAD RecName: Full=50S ribosomal protein L4
 gi|242121553|gb|ACS79249.1| ribosomal protein L4/L1e [Desulfovibrio salexigens DSM 2638]
          Length = 206

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ +   ++ G + ++ ++F +  +  IL  V+R Q   KR G   +K R      
Sbjct: 1   MATITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S     +RGGG  FGP P      + KKVR LAL+ AL+ +   
Sbjct: 61  GAKPWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +MV+ N+   E KTK  V    AL      ++     D    L+ARNIP I L+    
Sbjct: 121 EKMMVVKNIDLPEIKTKLFVEVAEALG-LEKALVVVKDADNKLLLSARNIPGIKLITADQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NVYDIL+  +LV+ ++A + L++R K
Sbjct: 180 LNVYDILKARQLVMLENAAQDLQERLK 206


>gi|258651364|ref|YP_003200520.1| 50S ribosomal protein L4/L1e [Nakamurella multipartita DSM 44233]
 gi|258554589|gb|ACV77531.1| ribosomal protein L4/L1e [Nakamurella multipartita DSM 44233]
          Length = 248

 Score =  194 bits (494), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G     + + ++IF +     ++ +V+  Q    R G  K+K R EV+  
Sbjct: 1   MTTVQITDPAGAAGATVELPDEIFNVPANVPLMHQVVVAQLAAARQGTHKAKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP+P       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPLPRDYTQRTPKKMKAAALRGALSDRARG 120

Query: 121 NDIMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            ++ V+++L       TK  +    ++  +  +++     D     + RN+PN++LL   
Sbjct: 121 GNVHVLESLSVDGTPSTKKALGALHSVSTARKILVVLQFGDEIGWKSLRNVPNVHLLWAG 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V +++A+E  
Sbjct: 181 QLNTYDVLDSDDVVFTRAALEEF 203


>gi|159039833|ref|YP_001539086.1| ribosomal protein L4/L1e [Salinispora arenicola CNS-205]
 gi|157918668|gb|ABW00096.1| ribosomal protein L4/L1e [Salinispora arenicola CNS-205]
          Length = 216

 Score =  194 bits (494), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V  ++G   G + +  DIF  +    ++ +V+  Q    R G  K+K R EVA  
Sbjct: 1   MTTVDVHTVEGTTAGSVELPADIFDAQANIALMHQVVVAQLAAARQGTHKTKTRGEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRTRA 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             + V++  V+ ++  TK  +     L  +  +++     D    ++ RN P ++L+   
Sbjct: 121 GKLHVVEAFVAGEKPSTKAALATLAKLTDARRVLVVLSSTDELNWVSLRNEPRVHLIESG 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V ++ A++  
Sbjct: 181 QLNTYDVLVADDVVFTREALDEF 203


>gi|116617330|ref|YP_817701.1| 50S ribosomal protein L4P [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272469|sp|Q03ZP4|RL4_LEUMM RecName: Full=50S ribosomal protein L4
 gi|116096177|gb|ABJ61328.1| LSU ribosomal protein L4P [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 207

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 107/203 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   DG     I +++ +FA++P   ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVAVLKQDGSQAAEIELNDAVFAIEPNNAVITDAVLMQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + + +K   LAL+  LS K   
Sbjct: 61  GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L  +  KT+        L      ++   + + N  L+ARN+ N+ ++  +G
Sbjct: 121 NKLVVVDALSFEAPKTQDFKKVLANLSADKKTLVVVDEDNENAILSARNLANVQVMTTKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           INV D++   KLV+ +S+IE ++
Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203


>gi|154498884|ref|ZP_02037262.1| hypothetical protein BACCAP_02876 [Bacteroides capillosus ATCC
           29799]
 gi|150271724|gb|EDM98950.1| hypothetical protein BACCAP_02876 [Bacteroides capillosus ATCC
           29799]
          Length = 206

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V ++ G+  G + +S+ IF ++P   ++   ++      R G   +  R+EV+  
Sbjct: 1   MPKATVVDMTGKKVGEVDLSDAIFGIEPNVSVVHEAVKNHLANCRQGTQSALTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P    + L KKV+ LAL+ ALS K   
Sbjct: 61  GIKPWRQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYSYTLNKKVKRLALKSALSAKAAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK +     A++   A+++   +++ N  L+ARNIP +     + 
Sbjct: 121 GNVIVVDGLNLDAVKTKNMAAFLGAVESKKAVLV-TNEVNENVVLSARNIPGVVTTTAKL 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++VYDI+  ++ ++ K+A+  +E+ F
Sbjct: 180 LSVYDIVNANQFIVDKAALAVIEEVF 205


>gi|72163044|ref|YP_290701.1| 50S ribosomal protein L4 [Thermobifida fusca YX]
 gi|109893650|sp|Q47LJ4|RL4_THEFY RecName: Full=50S ribosomal protein L4
 gi|71916776|gb|AAZ56678.1| LSU ribosomal protein L4P [Thermobifida fusca YX]
          Length = 222

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 3/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V++ +G  KG + + ++IFA K    ++ +V+  Q    R G   +K R EV   
Sbjct: 1   MATIEVKDREGAAKGSVELPDEIFAQKVNIPLIHQVVVAQQAAGRQGTHSTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALS++   
Sbjct: 61  GKKPYRQKGTGRARQGSVRAPQFTGGGTVHGPKPRDYAQRTPKKMKAAALRGALSNRAQH 120

Query: 121 NDIMVIDNLVSKECKTK---YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             I V+   V ++  TK     +   R +  S+ +++   + D++ +LA RN+P +++L 
Sbjct: 121 GRIHVVSEFVPEDVTTKRTQTALKTLRKITDSDKVLVVLSREDQHNRLALRNLPEVHILD 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202
              +N YD+L    +V +++  +  
Sbjct: 181 ANQVNTYDVLYADDIVFTEAGYQEF 205


>gi|325294397|ref|YP_004280911.1| ribosomal protein L4/L1e [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064845|gb|ADY72852.1| ribosomal protein L4/L1e [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 208

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ V N   ++ G +++ ++I     ++  +   ++WQ  ++R G   +K R EV   G
Sbjct: 1   MEIKVVNAANQEVGTVTIKDEIANAPIKKHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QK TGRAR  S    Q+ GGG   GP P    + LPKKVR +ALR  ++ +    
Sbjct: 61  KKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYYYPLPKKVRKVALRSVVAGRLQEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +++V+++   ++ KTK  +   R L   +  ++I   +L+ N   + RN+PN+ LL ++G
Sbjct: 121 NLIVVEDFTFEKPKTKQAIEFLRNLGLENEKVLIVVPELEENTYKSFRNLPNVKLLEIEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L   K +  KS +  LE+R 
Sbjct: 181 LNVYDMLCYDKCIFFKSTLPKLEERL 206


>gi|217967370|ref|YP_002352876.1| ribosomal protein L4/L1e [Dictyoglomus turgidum DSM 6724]
 gi|217336469|gb|ACK42262.1| ribosomal protein L4/L1e [Dictyoglomus turgidum DSM 6724]
          Length = 209

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MI++ V N   E  G I + E++F ++ +  +    +       R G   +K RSEV  +
Sbjct: 1   MIQVPVYNQKAEKVGEIELKEELFGVERRPDLFYTCVVMHLANGRQGTHSTKRRSEVNRS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QKGTG AR   +  + + GGG+ FGP P    + +PKK+R LA+R ALS K   
Sbjct: 61  GRKVWPQKGTGHARQGDRKATHWVGGGRPFGPKPRDYSYKIPKKMRRLAIRSALSTKLKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++++D +   + KTK LV          + ++I     D N + AA N+  +  +   
Sbjct: 121 NNLIILDKIELPQPKTKELVNILNNFGLADSKVLIGVPTKDENLKKAAMNLERVKTMIAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NVYD+L+   L+L+  AI  LE+ F
Sbjct: 181 VLNVYDLLKYDYLILTVDAIPVLEEAF 207


>gi|300022542|ref|YP_003755153.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524363|gb|ADJ22832.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC 51888]
          Length = 205

 Score =  194 bits (493), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 111/206 (53%), Positives = 143/206 (69%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V NLD    G I ++++IF L+ +  ++ R++R+Q+ ++  G   ++ RSEVA TG
Sbjct: 1   MKAEVTNLDASKAGDIDLADEIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KM  QKGTG ARH  KS  QFRGGGKAFGP P      LPKKVR+LALRHALS K  + 
Sbjct: 61  KKMTKQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +I+VID   S+  KT  L  +F  L L NALIIDG +L+  F  AARNIPNI++LPVQGI
Sbjct: 121 EIVVIDKATSE-GKTGALKAQFAKLSLDNALIIDGAELEPTFARAARNIPNIDVLPVQGI 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+++A+ ALE RFK
Sbjct: 180 NVYDILRRRKLVLTRAAVAALEARFK 205


>gi|295099236|emb|CBK88325.1| LSU ribosomal protein L4P [Eubacterium cylindroides T2-87]
          Length = 209

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N  G   G + +++ +F ++P Q  L   L  Q   +R G + +KGRSEV+  
Sbjct: 1   MATIDVINQTGAVVGSMELNDAVFGIEPNQQSLFDALVMQQASRRQGTADTKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S   +QFRGGG  FG  P    + + KKVR LA++ ALS+K  +
Sbjct: 61  GRKPYRQKGTGRARQGSIRATQFRGGGTVFGATPRSYKYTINKKVRRLAVKSALSEKLAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR--NFQLAARNIPNINLLPV 178
             + V+D     E KTK  V+   A+      +    + +   N  L+ARNIP + +L  
Sbjct: 121 QALSVLDKFEISEPKTKTFVSIMEAIKAPKKTLFVVAENEEATNAYLSARNIPGVMMLTS 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            GINV+D++  + +V++ +A++ +E+  
Sbjct: 181 TGINVFDLVNANAIVMTSAAVKEVEEAL 208


>gi|291532094|emb|CBK97679.1| LSU ribosomal protein L4P [Eubacterium siraeum 70/3]
 gi|291558165|emb|CBL35282.1| LSU ribosomal protein L4P [Eubacterium siraeum V10Sc8a]
          Length = 206

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV ++ G     + ++++IF ++P   ++   +      +R G   +  R+EV+  
Sbjct: 1   MAKISVYDMTGAVVSDLELNDNIFGIEPNTVVMHAAVVNYLANQRQGTQSTLTRTEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    ++L KKV+ LAL+ ALS K   
Sbjct: 61  GKKPWRQKGTGHARQGSTRAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++ + E KTK +V   +AL  ++  +I    +D     +A NIP +       
Sbjct: 121 GSMIVVDSITADEFKTKTIVNMLKALS-ADKALIVLNSVDEKVIKSAANIPGVKTTQANT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+ +K ++ K A+  +E+ +
Sbjct: 180 LNVYDILKYNKFIVVKDAVATIEEVY 205


>gi|295394347|ref|ZP_06804572.1| ribosomal protein L4/L1 family protein [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972805|gb|EFG48655.1| ribosomal protein L4/L1 family protein [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 223

 Score =  194 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + + +  G+  G   +   IF  K    ++ +V+  Q    R G  K+K RSEV   G 
Sbjct: 6   TVDILDAKGKKAGSAELPASIFDQKTNVPLIHQVVVAQLAASRQGTHKAKTRSEVRGGGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTG AR  S    Q+ GGG   GPVP       PKK+++ ALR ALSD+     
Sbjct: 66  KPYRQKGTGNARQGSIRAPQYAGGGIVHGPVPRDYSQRTPKKMKAAALRGALSDRARLGQ 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + +V + + S    TK       AL      +I   + D    L+ RN+P +++L    +
Sbjct: 126 VFVVKNLIDSDVPSTKAARQALEALSDRAHKLIVTERDDSITALSVRNLPTVHVLSFDQL 185

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N YD+L    +V +++A+ +  +
Sbjct: 186 NTYDVLMADDIVFTEAALNSFLE 208


>gi|224542239|ref|ZP_03682778.1| hypothetical protein CATMIT_01414 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524781|gb|EEF93886.1| hypothetical protein CATMIT_01414 [Catenibacterium mitsuokai DSM
           15897]
          Length = 215

 Score =  194 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 118/207 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ +++ N +GE    + ++E++F ++P    +  V+  Q    R G  K K R EV+  
Sbjct: 9   MLNIALFNQNGEKLNDLELNENVFGIEPNNQAIFDVVLLQRASLRQGTHKVKNRHEVSGG 68

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P      + KKV++LALR  LS K   
Sbjct: 69  GKKPWRQKGTGRARQGSIRAPQWRGGGIVFGPTPRSYDFKINKKVKNLALRSVLSQKVID 128

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++ +D +  +  KTK +V      +     +I   +L+ N  L+ARN+P + ++    
Sbjct: 129 QELVALDAIAFETIKTKNVVNFLGNFENPRKTLIVVDKLEENLVLSARNVPGVKVIEASN 188

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NVYD++ C+KL++++ AI+A+E+  K
Sbjct: 189 VNVYDVMDCTKLMMTEKAIKAVEEVLK 215


>gi|300174030|ref|YP_003773196.1| 50S ribosomal protein L4 [Leuconostoc gasicomitatum LMG 18811]
 gi|299888409|emb|CBL92377.1| 50S ribosomal protein L4 [Leuconostoc gasicomitatum LMG 18811]
          Length = 207

 Score =  194 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 106/203 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   DG     I + + +FA++P   ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVAVLKQDGSQAAEIELDDAVFAVEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + + +K   LAL+  LS K   
Sbjct: 61  GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVTE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D L  +  KT+        L +    ++   + + N  L+ARN+ N+ ++  +G
Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVDEDNENAILSARNLSNVQVMTTKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           INV D++   KLV+ +S+IE ++
Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203


>gi|300088196|ref|YP_003758718.1| 50S ribosomal protein L4/L1e [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527929|gb|ADJ26397.1| ribosomal protein L4/L1e [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 210

 Score =  194 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 115/203 (56%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ V N  G+    ++VS+++FA+     ++ + +  Q+   R G S ++ RSEV+ T 
Sbjct: 1   MEIPVYNTSGQVVRNVTVSDELFAVPMNDAVVHQAMVAQAANARQGTSSTRTRSEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KM+ QKGTG AR  S+      GGG  FGP P     +LPKK+R LA+R  LSDK  S 
Sbjct: 61  QKMFRQKGTGEARAGSRKSGLRPGGGVIFGPKPRDYSKSLPKKMRRLAIRCLLSDKVASG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V+D L     KT+ +     AL++ ++ II    +D N  L+ARN+P +   P   I
Sbjct: 121 SLKVVDALALDAPKTREMTQVLTALEIGSSAIIATAGVDENVVLSARNLPRVKTTPANLI 180

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           NV D+L+   L+L++ A+E ++ 
Sbjct: 181 NVGDLLKYDTLLLTEQALEVVQQ 203


>gi|167749438|ref|ZP_02421565.1| hypothetical protein EUBSIR_00392 [Eubacterium siraeum DSM 15702]
 gi|167657610|gb|EDS01740.1| hypothetical protein EUBSIR_00392 [Eubacterium siraeum DSM 15702]
          Length = 206

 Score =  194 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV ++ G     + ++++IF ++P   ++   +      +R G   +  R+EV+  
Sbjct: 1   MAKVSVYDMTGAVVSDLELNDNIFGIEPNTVVMHAAVVNYLANQRQGTQSTLTRTEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    ++L KKV+ LAL+ ALS K   
Sbjct: 61  GKKPWRQKGTGHARQGSTRAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++ + E KTK +V   +AL  ++  +I    +D     +A NIP +       
Sbjct: 121 GSMIVVDSITADEFKTKTIVNMLKALS-ADKALIVLNSVDEKVIKSAANIPGVKTTQANT 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+ +K ++ K A+  +E+ +
Sbjct: 180 LNVYDILKYNKFIVVKDAVATIEEVY 205


>gi|58038854|ref|YP_190818.1| 50S ribosomal protein L4 [Gluconobacter oxydans 621H]
 gi|81557183|sp|Q5FTY4|RL4_GLUOX RecName: Full=50S ribosomal protein L4
 gi|58001268|gb|AAW60162.1| LSU ribosomal protein L4P [Gluconobacter oxydans 621H]
          Length = 204

 Score =  194 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 82/205 (40%), Positives = 120/205 (58%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  ++ LD    G +++ E+IFA+ P+  I+ARV+ WQ  ++R G  ++KG  E++ T 
Sbjct: 1   MEYDIKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    QFR GG   GPV     + LPKKVR L L  ALS K    
Sbjct: 61  KKPYRQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLICALSQKAAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D       KT+    + +AL  ++ALI+DG  +D  F  A  N+P I++LP  G 
Sbjct: 121 KLIVLDAAN-GVTKTREAAAKIKALGWTSALIVDGA-VDEQFARAIANLPKIDVLPTIGA 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL    LV++++ +E L++R 
Sbjct: 179 NVYDILNHDVLVITRAGLEGLKERL 203


>gi|15607842|ref|NP_215216.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Rv]
 gi|15840109|ref|NP_335146.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CDC1551]
 gi|31791887|ref|NP_854380.1| 50S ribosomal protein L4 [Mycobacterium bovis AF2122/97]
 gi|121636624|ref|YP_976847.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148660477|ref|YP_001282000.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
 gi|148821907|ref|YP_001286661.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis F11]
 gi|167967944|ref|ZP_02550221.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
 gi|215402486|ref|ZP_03414667.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 02_1987]
 gi|215410257|ref|ZP_03419065.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A]
 gi|215425944|ref|ZP_03423863.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T92]
 gi|215429542|ref|ZP_03427461.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis EAS054]
 gi|215444825|ref|ZP_03431577.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T85]
 gi|218752352|ref|ZP_03531148.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis GM 1503]
 gi|219556551|ref|ZP_03535627.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T17]
 gi|224989096|ref|YP_002643783.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797645|ref|YP_003030646.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 1435]
 gi|254231022|ref|ZP_04924349.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C]
 gi|254363649|ref|ZP_04979695.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549663|ref|ZP_05140110.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185584|ref|ZP_05763058.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CPHL_A]
 gi|260199712|ref|ZP_05767203.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis T46]
 gi|260203873|ref|ZP_05771364.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis K85]
 gi|289442103|ref|ZP_06431847.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46]
 gi|289446262|ref|ZP_06436006.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A]
 gi|289552959|ref|ZP_06442169.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605]
 gi|289568646|ref|ZP_06448873.1| ribosomal protein L4 [Mycobacterium tuberculosis T17]
 gi|289573310|ref|ZP_06453537.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85]
 gi|289744426|ref|ZP_06503804.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987]
 gi|289749209|ref|ZP_06508587.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92]
 gi|289752749|ref|ZP_06512127.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054]
 gi|289756790|ref|ZP_06516168.1| ribosomal protein L4 [Mycobacterium tuberculosis T85]
 gi|289760829|ref|ZP_06520207.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503]
 gi|294996197|ref|ZP_06801888.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 210]
 gi|297633201|ref|ZP_06950981.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN 4207]
 gi|297730181|ref|ZP_06959299.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN R506]
 gi|298524193|ref|ZP_07011602.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A]
 gi|306774813|ref|ZP_07413150.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001]
 gi|306781455|ref|ZP_07419792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002]
 gi|306783354|ref|ZP_07421676.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003]
 gi|306787723|ref|ZP_07426045.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004]
 gi|306794490|ref|ZP_07432792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005]
 gi|306796456|ref|ZP_07434758.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006]
 gi|306802316|ref|ZP_07438984.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008]
 gi|306806526|ref|ZP_07443194.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007]
 gi|306966723|ref|ZP_07479384.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009]
 gi|306970915|ref|ZP_07483576.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010]
 gi|307078645|ref|ZP_07487815.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011]
 gi|307083209|ref|ZP_07492322.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012]
 gi|313657508|ref|ZP_07814388.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN V2475]
 gi|46397667|sp|P60728|RL4_MYCBO RecName: Full=50S ribosomal protein L4
 gi|46397668|sp|P60729|RL4_MYCTU RecName: Full=50S ribosomal protein L4
 gi|166234687|sp|A1KGI3|RL4_MYCBP RecName: Full=50S ribosomal protein L4
 gi|166234691|sp|A5U088|RL4_MYCTA RecName: Full=50S ribosomal protein L4
 gi|254803746|sp|C1AL36|RL4_MYCBT RecName: Full=50S ribosomal protein L4
 gi|1806170|emb|CAB06465.1| PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD [Mycobacterium tuberculosis
           H37Rv]
 gi|13880259|gb|AAK44960.1| ribosomal protein L4 [Mycobacterium tuberculosis CDC1551]
 gi|31617474|emb|CAD93584.1| PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD [Mycobacterium bovis
           AF2122/97]
 gi|121492271|emb|CAL70738.1| Probable 50S ribosomal protein L4 rplD [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600081|gb|EAY59091.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C]
 gi|134149163|gb|EBA41208.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504629|gb|ABQ72438.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
 gi|148720434|gb|ABR05059.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis F11]
 gi|224772209|dbj|BAH25015.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319148|gb|ACT23751.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 1435]
 gi|289415022|gb|EFD12262.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46]
 gi|289419220|gb|EFD16421.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A]
 gi|289437591|gb|EFD20084.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605]
 gi|289537741|gb|EFD42319.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85]
 gi|289542400|gb|EFD46048.1| ribosomal protein L4 [Mycobacterium tuberculosis T17]
 gi|289684954|gb|EFD52442.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987]
 gi|289689796|gb|EFD57225.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92]
 gi|289693336|gb|EFD60765.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054]
 gi|289708335|gb|EFD72351.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503]
 gi|289712354|gb|EFD76366.1| ribosomal protein L4 [Mycobacterium tuberculosis T85]
 gi|298493987|gb|EFI29281.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A]
 gi|308216703|gb|EFO76102.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001]
 gi|308325755|gb|EFP14606.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002]
 gi|308331848|gb|EFP20699.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003]
 gi|308335635|gb|EFP24486.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004]
 gi|308337250|gb|EFP26101.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005]
 gi|308343116|gb|EFP31967.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006]
 gi|308347003|gb|EFP35854.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007]
 gi|308350982|gb|EFP39833.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008]
 gi|308355578|gb|EFP44429.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009]
 gi|308359536|gb|EFP48387.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010]
 gi|308363441|gb|EFP52292.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011]
 gi|308367079|gb|EFP55930.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012]
 gi|323720926|gb|EGB29992.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CDC1551A]
 gi|326905076|gb|EGE52009.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis W-148]
 gi|328457426|gb|AEB02849.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 4207]
          Length = 223

 Score =  194 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V+   G+  G I +  ++F +     ++ +V+  Q    R G   +K R EV+  G 
Sbjct: 10  KIDVKTPAGKVDGAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGR 69

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  
Sbjct: 70  KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 129

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  + + +  +   TK       +L     +++   + D     + RN+P +++L    +
Sbjct: 130 IHAITELVEGQNPSTKSARAFLASLTERKQVLVVIGRSDEAGAKSVRNLPGVHILAPDQL 189

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+LR   +V S  A+ A
Sbjct: 190 NTYDVLRADDVVFSVEALNA 209


>gi|313888849|ref|ZP_07822510.1| 50S ribosomal protein L4 [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845218|gb|EFR32618.1| 50S ribosomal protein L4 [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 207

 Score =  194 bits (492), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 107/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + ++ G     + +SE +FA       +  V++     KR G   +K R+EV   
Sbjct: 1   MPKIQMIDIKGNPVEEVELSEGLFAAPVSTHAVYLVVKNILANKRQGTHSAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  F   P    +  PKK R +AL+  L+ K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFAKKPRDYSYTTPKKTRRVALKSVLTSKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++++D++  +E KTK      + +      ++     +++ Q AARNI  +       
Sbjct: 121 GEMILVDSIQMEEAKTKVFANILKNIGAGKKALVVVNDDEKDVQRAARNIAGVKTSRATD 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L+   LV++KSA++ +E+ F
Sbjct: 181 INVYDLLKYDNLVITKSALDVVEEVF 206


>gi|296392586|ref|YP_003657470.1| 50S ribosomal protein L4/L1e [Segniliparus rotundus DSM 44985]
 gi|296179733|gb|ADG96639.1| ribosomal protein L4/L1e [Segniliparus rotundus DSM 44985]
          Length = 218

 Score =  194 bits (492), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 1/206 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            +++   DG+  G   +  +IF       +L +V+  Q    R G  K K R EV+  G 
Sbjct: 4   TVTIHAADGKSAGTFDLPAEIFDAPANISLLHQVVTAQLAAARQGTHKVKTRGEVSGGGR 63

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S     F GGG   GPVP       PKK+++ ALR ALSD+     
Sbjct: 64  KPYKQKGTGRARQGSTRAPHFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARGGR 123

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + ++D LV+ +   TK       ++     L++   + D     + RN+P+ ++L    +
Sbjct: 124 VHIVDELVAGQSPSTKKASAFLDSIASRPRLLVVLGRADETGLKSVRNLPHAHILTPDQL 183

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           N YD+L+   +V S  A+    +  K
Sbjct: 184 NTYDVLKSDDIVFSLEALTTFIEHHK 209


>gi|300857763|ref|YP_003782746.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis FRC41]
 gi|300685217|gb|ADK28139.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis FRC41]
 gi|302205501|gb|ADL09843.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis C231]
 gi|302330056|gb|ADL20250.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis 1002]
 gi|308275737|gb|ADO25636.1| 50S ribosomal protein L4 [Corynebacterium pseudotuberculosis I19]
          Length = 217

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   +G+  G + +  +IF  +    ++ +V+  Q   KR G   +K R+EV+  G 
Sbjct: 5   KLDVLTAEGKTDGQVELPAEIFDREASVALMHQVVNAQLAAKRQGTHSTKTRAEVSGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG + GP P       PKK+   AL  ALSD+     
Sbjct: 65  KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALYGALSDRARHER 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI  LV  +   TK        +     +++   + D   Q +ARN+P +++L    +
Sbjct: 125 IHVITELVPGQTPSTKSARAFVERITDRRNVLLVVGREDTTAQKSARNLPGVHILFADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L+   +V S  A+    +R
Sbjct: 185 NTYDVLKSDDVVFSVEALNTFINR 208


>gi|49475793|ref|YP_033834.1| 50S ribosomal protein L4 [Bartonella henselae str. Houston-1]
 gi|81647792|sp|Q6G2W6|RL4_BARHE RecName: Full=50S ribosomal protein L4
 gi|49238600|emb|CAF27841.1| 50S ribosomal protein l4 [Bartonella henselae str. Houston-1]
          Length = 206

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 114/206 (55%), Positives = 151/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG + G + VSE +F L P++ IL RV+RWQ  R++ G  +S+GRS+V+ TG
Sbjct: 1   MDLLIKTLDGNEVGKLKVSESVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV     H LPKK+R+L LR ALS K  ++
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHTLPKKIRALGLRFALSAKLKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++V+D    K+ KT+ LV+ F  L   NAL+I G ++D NF  A  NIPNI++LP+QGI
Sbjct: 121 DLIVVDEFNVKDAKTRMLVSCFSKLGFDNALLIGGNEVDLNFSRATSNIPNIDILPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR SKLVLSK+A+E LE+RFK
Sbjct: 181 NVYDILRRSKLVLSKAAVEVLEERFK 206


>gi|254822786|ref|ZP_05227787.1| 50S ribosomal protein L4 [Mycobacterium intracellulare ATCC 13950]
          Length = 223

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V+   G+ +G I +  ++F       ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 10  KIDVKTPAGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 69

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  
Sbjct: 70  KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 129

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  +   TK        L     +++   + D     + RN+P +++L    +
Sbjct: 130 IHAVTEIVAGQTPSTKSARAFLGTLTERKQVLVVIGRSDEAGAKSVRNLPGVHILTPGQL 189

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+LR   +V S  A+ A
Sbjct: 190 NTYDVLRSDDVVFSVEALNA 209


>gi|294814468|ref|ZP_06773111.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064]
 gi|326442857|ref|ZP_08217591.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064]
 gi|294327067|gb|EFG08710.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064]
          Length = 216

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/202 (33%), Positives = 102/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K K R EV   
Sbjct: 1   MSTIDILSPAGDKTGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR AL+D+  +
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+  +V     TK   T F  +     L++   + D    L+ARN+P +++L    
Sbjct: 121 ARIHVVTGVVEGGISTKAARTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++R   +V +++A E  
Sbjct: 181 LNTYDVIRSEDVVFTQAAFETF 202


>gi|254391392|ref|ZP_05006595.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064]
 gi|197705082|gb|EDY50894.1| 50S ribosomal protein L4 [Streptomyces clavuligerus ATCC 27064]
          Length = 219

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/202 (33%), Positives = 102/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K K R EV   
Sbjct: 4   MSTIDILSPAGDKTGTVELPAEIFDAKVSVPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 63

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR AL+D+  +
Sbjct: 64  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARN 123

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+  +V     TK   T F  +     L++   + D    L+ARN+P +++L    
Sbjct: 124 ARIHVVTGVVEGGISTKAARTLFGKISERKNLLLVVERSDEAAWLSARNLPQVHILEPGQ 183

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++R   +V +++A E  
Sbjct: 184 LNTYDVIRSEDVVFTQAAFETF 205


>gi|94266252|ref|ZP_01289959.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1]
 gi|93453178|gb|EAT03642.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1]
          Length = 207

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    + N   E  G I +++ +  L+    +L  ++R Q   +R G + +K R EV+ +
Sbjct: 1   MAVTEIYNTSKEKVGEIDLNDQLVKLEVNPHLLHDIVRMQRANRRAGTAATKTRKEVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTGRAR  ++    +RGGG  FGP P      +P+K R L LR A+S ++  
Sbjct: 61  SKKPWRQKGTGRARAGTRKSPVWRGGGTVFGPQPRDYSFRMPRKARRLGLRMAISARYQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++V+++    E KTK  V       + NALI+   +L  N + ++RN+P   +LP +G
Sbjct: 121 DMLLVLEDFQLDEIKTKKFVEVMDNFAIDNALIVVAERL-ENLERSSRNVPGFKVLPAEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL    ++L K ++  LE+R 
Sbjct: 180 LNVYDILLHKHIILLKPSVGQLEERL 205


>gi|326692236|ref|ZP_08229241.1| 50S ribosomal protein L4 [Leuconostoc argentinum KCTC 3773]
          Length = 207

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 107/203 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   DG     + +++ +FA++P   ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVAVLKQDGSQAAELELNDAVFAIEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + + +K   LAL+  LS K   
Sbjct: 61  GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPTPRSYAYRINRKSYQLALKSVLSQKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D L  +  KT+        L +    ++   + + N  L+ARN+ N+ ++  +G
Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVDEDNENAILSARNLANVQVMTTKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           INV D++   KLV+ +S+IE ++
Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203


>gi|315122817|ref|YP_004063306.1| 50S ribosomal protein L4 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496219|gb|ADR52818.1| 50S ribosomal protein L4 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 207

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 179/207 (86%), Positives = 189/207 (91%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MIELSVR+LDG DKGVISVSE IFALKPQQGILARVLRWQSWR+  GCSKSKGRSE+AYT
Sbjct: 1   MIELSVRDLDGADKGVISVSEGIFALKPQQGILARVLRWQSWRRSKGCSKSKGRSEIAYT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+KMY QKGTGRARHSSKS  QFRGGGKAFGPVP  G H LPKK+RSLALRHALSDKF S
Sbjct: 61  GAKMYTQKGTGRARHSSKSAPQFRGGGKAFGPVPGNGAHDLPKKIRSLALRHALSDKFSS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           NDI+VID+LVSKE KTKYL  RFRAL+LSNALIIDG QLDRNFQLAARNIPNINLL VQG
Sbjct: 121 NDILVIDSLVSKELKTKYLAERFRALNLSNALIIDGVQLDRNFQLAARNIPNINLLSVQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           INVYDILRCSKL+LSKSA+EALE RFK
Sbjct: 181 INVYDILRCSKLILSKSAVEALEGRFK 207


>gi|311896569|dbj|BAJ28977.1| putative ribosomal protein L4 [Kitasatospora setae KM-6054]
          Length = 225

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 99/203 (48%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K K R EV   
Sbjct: 1   MSTIDILSPAGDKAGSLELPAEIFDAKVSVPLMHQVVVAQLAAARQGTHKVKRRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+ + ALR AL+D+   
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMIAAALRSALTDRARH 120

Query: 121 NDIMVID-NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I V+     ++   TK     F  +     L++   + D    L+ARN+PN+++L   
Sbjct: 121 ERIHVVTGVTATEAPSTKAAKVLFGKISERKNLLLVVEREDELGILSARNLPNVHILDAG 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V +++A E  
Sbjct: 181 QLNTYDVLVSDDVVFTQAAFERF 203


>gi|297192702|ref|ZP_06910100.1| 50S ribosomal protein L4 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721643|gb|EDY65551.1| 50S ribosomal protein L4 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 219

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 103/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K K R EV   
Sbjct: 4   MSTIDILSPAGDKSGTVELPAEIFDAKVSIPLIHQVVVAQLAAARQGTHKVKTRGEVRGG 63

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR AL+D+   
Sbjct: 64  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALTDRARH 123

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V  E  TK   T F  +     L++   + D    L+ARN+P +++L    
Sbjct: 124 SRIHVVSGVVEGEVSTKAAKTLFGKISERKNLLLVVDRADEAAWLSARNLPQVHILEPGQ 183

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +K+A E+ 
Sbjct: 184 LNTYDVLVSDDVVFTKAAFESF 205


>gi|16125498|ref|NP_420062.1| 50S ribosomal protein L4 [Caulobacter crescentus CB15]
 gi|221234244|ref|YP_002516680.1| 50S ribosomal protein L4 [Caulobacter crescentus NA1000]
 gi|46577288|sp|Q9A8V2|RL4_CAUCR RecName: Full=50S ribosomal protein L4
 gi|254803724|sp|B8H4D5|RL4_CAUCN RecName: Full=50S ribosomal protein L4
 gi|13422580|gb|AAK23230.1| ribosomal protein L4 [Caulobacter crescentus CB15]
 gi|220963416|gb|ACL94772.1| LSU ribosomal protein L1E-L4P [Caulobacter crescentus NA1000]
          Length = 212

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 135/206 (65%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V  LDG   G + + + IF + + +  IL RV+ WQ  ++R G  K + R+EV+ T
Sbjct: 1   MKLDVIKLDGGKAGSVDLDDAIFGIDEIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             KMY QKGTG ARH S+  +QF GG KA GPV       LPKK+R+LALRHALS K  +
Sbjct: 61  SKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRALALRHALSSKAKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D++   E KT  L   F  + L NAL+I G ++D NF+LAARNIPN+++LP  G
Sbjct: 121 GSLVVVDSVALTEAKTAALRATFDKIGLKNALVIAGPEVDANFKLAARNIPNVDVLPNAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LR   LVL+K A+EA+  RF
Sbjct: 181 LNVYDVLRRQTLVLTKDAVEAISARF 206


>gi|259500893|ref|ZP_05743795.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335]
 gi|302190654|ref|ZP_07266908.1| 50S ribosomal protein L4 [Lactobacillus iners AB-1]
 gi|309803686|ref|ZP_07697776.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d]
 gi|309804951|ref|ZP_07699009.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c]
 gi|309806704|ref|ZP_07700699.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b]
 gi|309808465|ref|ZP_07702364.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a]
 gi|309809135|ref|ZP_07703008.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D]
 gi|312871314|ref|ZP_07731412.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a]
 gi|312872623|ref|ZP_07732688.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1]
 gi|312874014|ref|ZP_07734049.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d]
 gi|312874786|ref|ZP_07734805.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b]
 gi|315654025|ref|ZP_07906941.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195]
 gi|325912358|ref|ZP_08174754.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D]
 gi|325913218|ref|ZP_08175587.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B]
 gi|329920653|ref|ZP_08277340.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G]
 gi|259167587|gb|EEW52082.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335]
 gi|308164284|gb|EFO66541.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d]
 gi|308165711|gb|EFO67936.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c]
 gi|308166884|gb|EFO69068.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b]
 gi|308168293|gb|EFO70412.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a]
 gi|308170580|gb|EFO72600.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D]
 gi|311089531|gb|EFQ47956.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b]
 gi|311090354|gb|EFQ48763.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d]
 gi|311091665|gb|EFQ50044.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1]
 gi|311093328|gb|EFQ51674.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a]
 gi|315488721|gb|EFU78367.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195]
 gi|325475829|gb|EGC78999.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D]
 gi|325477482|gb|EGC80625.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B]
 gi|328935911|gb|EGG32371.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G]
          Length = 204

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 115/205 (56%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           + + V +  G+  G + +++ IF ++P   ++   +  Q   KR G   +K RS V+  G
Sbjct: 1   MAIKVIDQKGKSVGEVDLNKCIFEVEPNDSVVFEAIIRQRAGKRQGTHATKNRSAVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S    Q+RGGG  FGP P      +P+K R LA++  LS K    
Sbjct: 61  KKPWKQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKVDMPRKARRLAIKSVLSQKVADG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V+D L     KTK L   F A+ +S  +++     D+N QL+ +N+P + ++PV G+
Sbjct: 121 NLIVLDQLTLATPKTKDLKAIFSAIKVSGKVLVVSD--DKNVQLSGKNLPQVKVVPVNGL 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV D +   KL+L++ AI+ +E+  
Sbjct: 179 NVVDAVDYEKLLLTQDAIKRIEEVL 203


>gi|239980055|ref|ZP_04702579.1| 50S ribosomal protein L4 [Streptomyces albus J1074]
 gi|291451912|ref|ZP_06591302.1| 50S ribosomal protein L4 [Streptomyces albus J1074]
 gi|291354861|gb|EFE81763.1| 50S ribosomal protein L4 [Streptomyces albus J1074]
          Length = 217

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 102/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKSRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+   
Sbjct: 61  GRKPYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V  E  TK        +     +++   + D    L+ARN+P +++L    
Sbjct: 121 DRIHVVTGVVEGEVSTKAAKGLLGKISERKNVLLVIERSDETALLSARNLPQVHILDPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +++A E+ 
Sbjct: 181 LNTYDVLVSDDVVFTQAAFESF 202


>gi|269955436|ref|YP_003325225.1| 50S ribosomal protein L4/L1e [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304117|gb|ACZ29667.1| ribosomal protein L4/L1e [Xylanimonas cellulosilytica DSM 15894]
          Length = 232

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +  G+  G   +  ++F +     ++ +V+  Q    R G   +K R EV   G 
Sbjct: 5   TVDVLDAQGKKAGQAELPAEVFDVVTNVPLIHQVVVAQRAAARQGTHATKTRGEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 65  KPYKQKGTGRARQGSTRAPQFAGGGTVHGPQPRSYDQRTPKKMKAAALRGALSDRARAGR 124

Query: 123 IMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+          TK  +     L     +++   + D    L+ RN+P ++LL    +
Sbjct: 125 VHVVTGFGIDGTPSTKTALQTLSVLSERRHVLVVTERSDEATILSLRNVPTVHLLVADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V ++ A+ A 
Sbjct: 185 NTYDVLVSDDVVFTQGALAAF 205


>gi|114570344|ref|YP_757024.1| 50S ribosomal protein L4 [Maricaulis maris MCS10]
 gi|122315785|sp|Q0ANQ1|RL4_MARMM RecName: Full=50S ribosomal protein L4
 gi|114340806|gb|ABI66086.1| LSU ribosomal protein L4P [Maricaulis maris MCS10]
          Length = 211

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 131/206 (63%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++ V+ L  +D G I + + +F ++  +  +L RV++WQ   ++ G  K+ GRSE+  T
Sbjct: 1   MKIEVKTLAAKDAGAIDLDDAVFGIEEVRSDLLQRVVKWQLAARQQGTHKTLGRSEINRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             +   QKG G ARH ++S  QF GGGKA GP      H LPKKVR+L LRHALS K  +
Sbjct: 61  KKRFGRQKGGGTARHGARSAPQFVGGGKAHGPRVRSHAHELPKKVRALGLRHALSAKLGA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +++ID+      +TK L T F  L +SNAL+I G +++ NF  AARN+P I++LP QG
Sbjct: 121 KSLVIIDDAALDAPQTKALRTSFEGLGISNALVISGAEVNENFAKAARNLPCIDVLPAQG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LR   LVL+K+A+E +  R 
Sbjct: 181 LNVYDVLRRDTLVLTKAAVEQIHARL 206


>gi|148544695|ref|YP_001272065.1| 50S ribosomal protein L4 [Lactobacillus reuteri DSM 20016]
 gi|184154048|ref|YP_001842389.1| 50S ribosomal protein L4 [Lactobacillus reuteri JCM 1112]
 gi|194466952|ref|ZP_03072939.1| ribosomal protein L4/L1e [Lactobacillus reuteri 100-23]
 gi|227363818|ref|ZP_03847925.1| ribosomal protein L4 [Lactobacillus reuteri MM2-3]
 gi|227543622|ref|ZP_03973671.1| ribosomal protein L4 [Lactobacillus reuteri CF48-3A]
 gi|300909349|ref|ZP_07126810.1| ribosomal protein L4/L1 family protein [Lactobacillus reuteri
           SD2112]
 gi|325683029|ref|ZP_08162545.1| 50S ribosomal protein L4 [Lactobacillus reuteri MM4-1A]
 gi|166990950|sp|A5VLK4|RL4_LACRD RecName: Full=50S ribosomal protein L4
 gi|226730679|sp|B2G8X7|RL4_LACRJ RecName: Full=50S ribosomal protein L4
 gi|148531729|gb|ABQ83728.1| LSU ribosomal protein L4P [Lactobacillus reuteri DSM 20016]
 gi|183225392|dbj|BAG25909.1| 50S ribosomal protein L4 [Lactobacillus reuteri JCM 1112]
 gi|194453988|gb|EDX42885.1| ribosomal protein L4/L1e [Lactobacillus reuteri 100-23]
 gi|227071175|gb|EEI09491.1| ribosomal protein L4 [Lactobacillus reuteri MM2-3]
 gi|227186462|gb|EEI66533.1| ribosomal protein L4 [Lactobacillus reuteri CF48-3A]
 gi|300893214|gb|EFK86573.1| ribosomal protein L4/L1 family protein [Lactobacillus reuteri
           SD2112]
 gi|324977379|gb|EGC14330.1| 50S ribosomal protein L4 [Lactobacillus reuteri MM4-1A]
          Length = 207

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G + +++ +F ++P + ++   +  Q    R G    K RS V+  
Sbjct: 1   MTSVNLYKQDGSQNGTVELNDAVFGVEPNENVVFDAILRQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    ++LP+KVR LA++ ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYKYSLPRKVRQLAIKSALSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N  +V+D L     KTK        L+++   ++     D+N  L+ARN+ N  ++   G
Sbjct: 121 NSFVVVDALNFDAPKTKEFADVMGNLNVAEKTLVVVTDDDKNAALSARNLANATVVTPAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+ +++   K+V++KSA+  +E+  
Sbjct: 181 VNILNVVDNQKIVITKSALSQVEEVL 206


>gi|313824893|gb|EFS62607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL063PA1]
          Length = 301

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+   ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +V   +   +  TK        L     +++   + D    L+ RN+  +++L    +
Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++ ++A 
Sbjct: 186 NTYDVVNARTIVFSEAGLDAF 206


>gi|317507410|ref|ZP_07965144.1| ribosomal protein L4/L1 family protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316254295|gb|EFV13631.1| ribosomal protein L4/L1 family protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 218

 Score =  193 bits (490), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            +++   DG+  G   +  +IF       +L +V+  Q    R G  K+K R EV+  G 
Sbjct: 4   TVTIHAADGKSAGTFDLPAEIFDAPANISLLHQVVTAQLAAARQGTHKAKTRGEVSGGGK 63

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S     F GGG   GPVP       PKK+++ ALR ALSD+     
Sbjct: 64  KPYKQKGTGRARQGSTRAPHFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARGER 123

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I ++D LV+ +   TK       ++ +   L++   + D     + RN+P+ ++L    +
Sbjct: 124 IHIVDELVAGQTPSTKKASAFLDSISIRPRLLVVLGRADEAGLKSVRNLPHAHILTPDQL 183

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           N YD+L+   +V S  A+    +  K
Sbjct: 184 NTYDVLKSDDIVFSLEALTTFIEHHK 209


>gi|319405897|emb|CBI79529.1| 50S ribosomal protein L4 [Bartonella sp. AR 15-3]
          Length = 206

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 117/206 (56%), Positives = 151/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V+ LDG++ G + VSE+IF L P++ IL RV+RWQ  R++ G   S+GRS+V+ TG
Sbjct: 1   MDLVVKTLDGKEAGKLKVSENIFGLTPREDILQRVIRWQLARRQKGTHPSQGRSDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV     H+LPKKVR+L LR ALS K  ++
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRCHAHSLPKKVRALGLRLALSVKLKTD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D L  ++ KTK L   F  L  +NAL+I G ++D NF  AA NIPNI++LPVQGI
Sbjct: 121 SLIVVDKLSIRDAKTKALNESFSKLGFNNALLIGGKEVDMNFFRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK A+E LE+RFK
Sbjct: 181 NVYDILRRGKLVLSKEAVETLEERFK 206


>gi|296533988|ref|ZP_06896504.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC
           49957]
 gi|296265654|gb|EFH11763.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC
           49957]
          Length = 206

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 116/206 (56%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LD    G I + + +FA  P+  I+ARV+ WQ  ++R G  K KG  EV+ T 
Sbjct: 1   MQLPVITLDNGQAGEIDLPDALFAAAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    QFR GG   GPV     ++L KKVR L L  ALS K    
Sbjct: 61  KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKAAEG 120

Query: 122 DIMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++V+D      + KT  + ++ +AL    + ++   Q++  F  A RN+ N+N+LP  G
Sbjct: 121 KLVVLDTAALGADAKTSAMASKVKALGW-KSALVVDAQVEDGFGRAVRNLKNVNVLPSMG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL+   L +++ A++AL++R 
Sbjct: 180 ANVYDILKHDVLAVTRQAVDALKERL 205


>gi|170017942|ref|YP_001728861.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20]
 gi|226730683|sp|B1MW13|RL4_LEUCK RecName: Full=50S ribosomal protein L4
 gi|169804799|gb|ACA83417.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20]
          Length = 207

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 107/203 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   DG     + +++ +FA++P   ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVAVLKQDGSQAAELELNDAVFAIEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + + +K   LAL+  LS K   
Sbjct: 61  GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPTPRSYAYRINRKAYQLALKSVLSQKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D L  +  KT+        L +    ++   + + N  L+ARN+ N+ ++  +G
Sbjct: 121 GKLVVVDALSFEAPKTQDFKKVLANLSVDTKTLVVVDEDNENAILSARNLTNVQVMTTKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           INV D++   KLV+ +S+IE ++
Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203


>gi|269925832|ref|YP_003322455.1| ribosomal protein L4/L1e [Thermobaculum terrenum ATCC BAA-798]
 gi|269789492|gb|ACZ41633.1| ribosomal protein L4/L1e [Thermobaculum terrenum ATCC BAA-798]
          Length = 223

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V NL+G+    + VS+ +F ++P   ++ + L  Q    R G   ++ R+EV+  G
Sbjct: 1   MQLPVYNLNGDIVSQLEVSDLVFGIQPNLAVMHQALVRQLANARTGTHDTRTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S    Q+RGGG  FGP P      +P+K+R LALR ALS K    
Sbjct: 61  RKPWRQKGTGRARQGSIRAPQWRGGGVVFGPHPRSYEQRMPRKMRRLALRSALSQKVAEE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++V+  L   E +TK ++    +       ++I     + + Q A  N+PN+ ++    
Sbjct: 121 RLLVVTGLSEIEPRTKAMIAALEKLGLAGQKVLIATNGRNESVQKAGSNLPNVKVIHASN 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+ D+L+   L L   A+ +L++  
Sbjct: 181 LNIADLLKYDYLFLEDGAVNSLQEIL 206


>gi|314924184|gb|EFS88015.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL001PA1]
 gi|314965094|gb|EFT09193.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL082PA2]
 gi|315093674|gb|EFT65650.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL060PA1]
 gi|315103968|gb|EFT75944.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL050PA2]
 gi|327326711|gb|EGE68497.1| 50S ribosomal protein L4 [Propionibacterium acnes HL103PA1]
          Length = 301

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+ + ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +V   +   +  TK        +     +++   + D    L+ RN+  +++L    +
Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGVAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++ ++A 
Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206


>gi|313123112|ref|YP_004033371.1| 50S ribosomal protein l4 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279675|gb|ADQ60394.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|325684721|gb|EGD26875.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 205

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    + + +G + G +++++++F+++P + ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    +++P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK  V     L L   +++     D+N QL+A+N+P + ++PV G
Sbjct: 121 QNLVVLDKLTLDAPKTKDFVAILNGLKLEGKVLVVSD--DKNVQLSAKNLPKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KLVL++  ++ +E+  
Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEEVL 204


>gi|239787564|emb|CAX84032.1| 50S ribosomal protein L4 [uncultured bacterium]
          Length = 217

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/205 (33%), Positives = 119/205 (58%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MIE  V +   +    +++S   F  + +  +L RV+ +Q  ++R+G + +K R EV   
Sbjct: 1   MIEFPVVDAANQTSHTVNLSSHAFGCEVRGDLLTRVVHYQLAKRRLGTASTKRRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  +    Q+R GG  FGP P      + +K R+L LR ALS K  +
Sbjct: 61  GHKPYRQKGTGNARQGTIRAPQYRTGGVVFGPHPRDYSVKMNRKERALGLRTALSAKREA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+ +    E KT+ ++     L+ +N+++I   + D   + +ARN+P ++++ V G
Sbjct: 121 EELIVLTDFGLTEIKTRSMLQVLTRLNAANSVLIVLPESDERIERSARNLPGVDVIQVDG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +NVYD+L   KL+++++A++ LE R
Sbjct: 181 VNVYDLLVHEKLLMTEAALQKLEAR 205


>gi|227431340|ref|ZP_03913393.1| ribosomal protein L4 [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352933|gb|EEJ43106.1| ribosomal protein L4 [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 207

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 108/203 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   DG     I +++ +FA++P   ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVAVLKQDGSQAAEIELNDAVFAIEPNNAVITDAVLMQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + + +K   LAL+  LS K   
Sbjct: 61  GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L  K  KT+ L      L      ++   + + N  L+ARN+ N+ ++  +G
Sbjct: 121 NKLVVVDALSFKAPKTQDLKKVLANLSADKKTLVVVDEDNENAILSARNLANVQVMTTKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           INV D++   KLV+ +S+IE ++
Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203


>gi|295688907|ref|YP_003592600.1| 50S 50S ribosomal protein L4/L1e [Caulobacter segnis ATCC 21756]
 gi|295430810|gb|ADG09982.1| ribosomal protein L4/L1e [Caulobacter segnis ATCC 21756]
          Length = 212

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/206 (47%), Positives = 134/206 (65%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V  LDG   G + + + IF +   +  IL RV+ WQ  ++R G  K + R+EV+ T
Sbjct: 1   MKLDVIKLDGGKAGSVDLDDAIFGIDDIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             KMY QKGTG ARH S+  +QF GG KA GPV       LPKK+R+LAL+HALS K  S
Sbjct: 61  SKKMYKQKGTGGARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRALALKHALSSKAKS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+ V  + KT  L   F  + L NAL+I G ++D NF+LAARNIPN+++LP  G
Sbjct: 121 GSLVVLDSAVLTDPKTAALRANFDKIGLKNALVIAGPEVDANFKLAARNIPNVDVLPNAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LR   LVL+K A+EA+  RF
Sbjct: 181 LNVYDVLRRQTLVLTKDAVEAISARF 206


>gi|327332710|gb|EGE74444.1| 50S ribosomal protein L4 [Propionibacterium acnes HL097PA1]
          Length = 301

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+ + ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +V   +   +  TK        L     +++   + D    L+ RN+  +++L    +
Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++ ++A 
Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206


>gi|269837067|ref|YP_003319295.1| 50S ribosomal protein L4/L1e [Sphaerobacter thermophilus DSM 20745]
 gi|269786330|gb|ACZ38473.1| ribosomal protein L4/L1e [Sphaerobacter thermophilus DSM 20745]
          Length = 209

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 113/203 (55%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V ++ G++ G I +++ +F ++P   ++ +    Q    R+G   +K R EV   G
Sbjct: 1   MQVPVYDVTGQETGQIELADSVFGIEPNVPVMHQAYVRQMANARLGTHDTKTRGEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRARH S     +RGGG  FGP P      +P+K+R LA+R  LS K  ++
Sbjct: 61  RKPWRQKGTGRARHGSIRSPLWRGGGVVFGPHPRKYTQRMPRKMRRLAIRSVLSAKMKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            ++V++ L   E +TK ++          + + +I   +   N +  A N+ ++ +LP Q
Sbjct: 121 QVVVVEGLTELEPRTKAMIQTLARLPKGDARSTLILVDEPRENLRRGANNLEHVRVLPAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N+ D+L+  +L+L++ A++ +
Sbjct: 181 YVNMRDVLKYERLLLTREAVDVI 203


>gi|300812351|ref|ZP_07092786.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496656|gb|EFK31743.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 205

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    + + +G + G +++++++F+++P + ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    +++P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK  +     L L   +++     D+N QL+A+N+P + ++PV G
Sbjct: 121 QNLVVLDKLTLDAPKTKDFIAILNGLKLEGKVLVVSD--DKNVQLSAKNLPKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KLVL++  ++ +E+  
Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEEVL 204


>gi|213965010|ref|ZP_03393209.1| ribosomal protein L4/L1 family protein [Corynebacterium amycolatum
           SK46]
 gi|213952546|gb|EEB63929.1| ribosomal protein L4/L1 family protein [Corynebacterium amycolatum
           SK46]
          Length = 215

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   +G   G + +   +F  +    ++ +V+  Q    R G  K K R EV   G 
Sbjct: 5   KLDVHTAEGGVNGSVELPASVFDAEVSIALMHQVVVAQRAAARQGTHKVKTRGEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GPVP       PKK+ + ALR ALSD+   + 
Sbjct: 65  KPWRQKGTGRARQGSIRAPHWTGGGIVHGPVPRDYSQRTPKKMIAAALRGALSDRARHDR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V++ LV  +   TK   T    L   + +++   + D N   + RN+P +++L    +
Sbjct: 125 IHVVEELVPGQTPSTKAARTFVERLTERHNVLVVLPREDVNSWKSVRNLPGVHILSEDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L+   ++ +  A+     R
Sbjct: 185 NTYDVLKADDVIFAVQALNDFITR 208


>gi|329898793|ref|ZP_08272465.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC3088]
 gi|328920745|gb|EGG28207.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC3088]
          Length = 205

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V        G +SVS+  FA +  + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MELNVLKPGNASAGTVSVSDVAFAREYNEALVHQVVTAYLAGARQGTRAQKTRSEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + +K+   A+R  LS+     
Sbjct: 61  KKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNRKMYRAAIRSILSELARQE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++++  +  KTK LV +     L N  +I   +++ N  LA+RN+  +++  V+ +
Sbjct: 121 RLLVVESMDVEAPKTKLLVKQLGEFGLDNV-LIVASEVNENLYLASRNLHTVDVRDVESV 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++  E+  
Sbjct: 180 DPVSLIAYDKVVVTVDAVKKFEEML 204


>gi|154253178|ref|YP_001414002.1| 50S ribosomal protein L4/L1e [Parvibaculum lavamentivorans DS-1]
 gi|171769628|sp|A7HWR2|RL4_PARL1 RecName: Full=50S ribosomal protein L4
 gi|154157128|gb|ABS64345.1| ribosomal protein L4/L1e [Parvibaculum lavamentivorans DS-1]
          Length = 206

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 103/206 (50%), Positives = 144/206 (69%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V  L+ +  G + +++ +FAL+P+  IL R++ WQ  +++ G  K+KGRSE+A TG
Sbjct: 1   MKIDVTTLEAKKAGSVDLTDGVFALEPRGDILHRMVAWQLAKRQAGTHKTKGRSEIALTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH  +   QFRGGGKAFGPV       +PKKVR+LAL+ ALS K  S+
Sbjct: 61  KKFVKQKGSGGARHGDRKAPQFRGGGKAFGPVVRSHAFDMPKKVRALALKLALSAKAKSD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D     E +TK     F  L L + LIIDG +LD NF LAARN+PN+++LPVQGI
Sbjct: 121 NLVILDEAKLAEPRTKAAKDAFEKLGLKSVLIIDGAELDANFALAARNLPNVDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVL+K+A+E+LE RFK
Sbjct: 181 NVYDILRREKLVLTKAAVESLEARFK 206


>gi|115376101|ref|ZP_01463346.1| ribosomal protein L4/L1 family [Stigmatella aurantiaca DW4/3-1]
 gi|310820995|ref|YP_003953353.1| 50S ribosomal protein L4 [Stigmatella aurantiaca DW4/3-1]
 gi|115366916|gb|EAU65906.1| ribosomal protein L4/L1 family [Stigmatella aurantiaca DW4/3-1]
 gi|309394067|gb|ADO71526.1| 50S ribosomal protein L4 [Stigmatella aurantiaca DW4/3-1]
          Length = 207

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 102/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +LDG+    I +S+++F  +P   +   V + Q   KR G    K  S V+  
Sbjct: 1   MAKFKVIDLDGKQVSEIELSDEVFGAEPNPHLFYEVAKMQQINKRRGTVGVKNTSLVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   S + GGGKA  P      +  P+KVR  ALR ALS +   
Sbjct: 61  GKKPWKQKGTGRARQGSIRASHWVGGGKAMAPKARDYFYRPPRKVRRGALRAALSQRARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + ++D       KTK               ++   + + +   + RN+   ++LP +G
Sbjct: 121 NALFILDGFKLDAPKTKQAFDVLTRRLKLENALVVDDKGNNHLHRSVRNLARFDVLPPEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN+  +LR  +LVL+ +A +A+++  
Sbjct: 181 INLESVLRHKQLVLTSAAAKAIQEAL 206


>gi|329114216|ref|ZP_08242978.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001]
 gi|326696292|gb|EGE47971.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001]
          Length = 204

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ ++ LD    G  ++ ++IFA+ P+  I+ARV+ WQ  ++R G  K KG  EV+ T 
Sbjct: 1   MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    Q+R GG   GPV     + LPKKVR L L  ALS K    
Sbjct: 61  KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +  S   KT  L  + ++L    + +I    +D +F  AARN+P I++LP  G 
Sbjct: 121 KLIVLQS-ASGVDKTSELAKKLKSLG-WTSALIVDAAVDESFGRAARNLPKIDILPTIGA 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL    L ++++ +E L++R 
Sbjct: 179 NVYDILNHEVLAITQAGLEGLKERL 203


>gi|300933009|ref|ZP_07148265.1| 50S ribosomal protein L4 [Corynebacterium resistens DSM 45100]
          Length = 217

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   DG+  G + +   IF  +    ++ +V+  Q   KR G   +K R +V   G 
Sbjct: 5   KLDVHTADGKTNGSVELPASIFDAEVSVALMHQVVTAQLAAKRQGTHATKARGDVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG   GP P       PKK+++ ALR AL+D+     
Sbjct: 65  KPWRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRARHAR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+++LV  +   TK        L    ++++   + D N + + RN+PN++ L    +
Sbjct: 125 IHVVEDLVPGQTPSTKSARGFLERLTDRKSVLVVLGREDINSRKSVRNLPNVHTLVSDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A+ A 
Sbjct: 185 NTYDVLNADDVVFSVEALNAF 205


>gi|169335630|ref|ZP_02862823.1| hypothetical protein ANASTE_02050 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258368|gb|EDS72334.1| hypothetical protein ANASTE_02050 [Anaerofustis stercorihominis DSM
           17244]
          Length = 205

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V N+ GE    +S++ DIF ++P   ++ + ++     +R G   +K R+EV   G
Sbjct: 1   MKADVLNVKGEVVESVSLNNDIFKIEPNMPVVHQYVKAYLANQRQGTQSAKTRAEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     + GGG AF P P     ++ KK++ LA++   S K    
Sbjct: 61  KKPWRQKGTGRARVGSSRNPVWTGGGVAFAPKPRDYSQSINKKMKRLAMKSVFSAKVNDK 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++ ++D L     KTK +V  F  L   N  ++   + D+N   + RNI +     V  +
Sbjct: 121 ELFILDELKFDAPKTKAMVEVFDNLK-INKTLVVIAENDKNVVNSVRNIKDAKCATVGTL 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVY++L+ + L+L+K A+  +E+ +K
Sbjct: 180 NVYEMLKYNNLILTKDALTKIEEVYK 205


>gi|296111430|ref|YP_003621812.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154]
 gi|295832962|gb|ADG40843.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154]
          Length = 207

 Score =  192 bits (488), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 106/203 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   DG     + +++ +FA++P   ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVAVLKQDGSQAAELELNDAVFAIEPNNTVITDAVLMQRASMRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + + +K   LAL+  LS K   
Sbjct: 61  GRKPWKQKGTGRARAGSIREPQFRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D L  +  KT+        L      ++   + + N  L+ARN+ N+ ++  +G
Sbjct: 121 GKLVVVDALTFEAPKTQDFKKVLTNLAADTKTLVVVDENNENAILSARNLANVQVMTTKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           INV D++   KLV+ +S+IE ++
Sbjct: 181 INVLDVVNADKLVIVQSSIEEIQ 203


>gi|297741766|emb|CBI32995.3| unnamed protein product [Vitis vinifera]
          Length = 315

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 117/203 (57%), Gaps = 1/203 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   EDKG + ++ D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 106 IPVTNFHNEDKGFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 165

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     +
Sbjct: 166 PWRQKGTGRARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKL 225

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +V D+L     KTK +V   + ++ +   L++DG  +    +LA +N+  +N+LP  G+N
Sbjct: 226 LVFDDLEVPSHKTKNIVNYVKEMENTKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLN 285

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VY IL    LV+S+ A+  + +R
Sbjct: 286 VYSILLHDTLVMSRDAVNKIVER 308


>gi|257440268|ref|ZP_05616023.1| ribosomal protein L4/L1 family protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257197302|gb|EEU95586.1| ribosomal protein L4/L1 family protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 207

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V +++G+    I +S+ +F + P +  +   +      +R G   +K R EV+  
Sbjct: 1   MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLANQRQGTQNTKIRMEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    + +  KV+ LAL   LSDK  +
Sbjct: 61  GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D     E KTK +V    A+      ++    +D  F  +A NI  +       
Sbjct: 121 GNMVVVDKFTCDEYKTKAVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAGS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L   KL++S  A + LE+  
Sbjct: 181 VNTYDVLNADKLIISVDAAKKLEEVL 206


>gi|315109231|gb|EFT81207.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL030PA2]
          Length = 301

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+   ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +V   +   +  TK        L     +++   + D    L+ RN+  +++L    +
Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++ ++A 
Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206


>gi|289427743|ref|ZP_06429455.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           J165]
 gi|295131386|ref|YP_003582049.1| ribosomal protein, L4/L1 family [Propionibacterium acnes SK137]
 gi|289159234|gb|EFD07426.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           J165]
 gi|291376076|gb|ADD99930.1| ribosomal protein, L4/L1 family [Propionibacterium acnes SK137]
 gi|313763237|gb|EFS34601.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL013PA1]
 gi|313773096|gb|EFS39062.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL074PA1]
 gi|313793259|gb|EFS41317.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL110PA1]
 gi|313801097|gb|EFS42365.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL110PA2]
 gi|313808838|gb|EFS47292.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL087PA2]
 gi|313810368|gb|EFS48082.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL083PA1]
 gi|313812296|gb|EFS50010.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL025PA1]
 gi|313816573|gb|EFS54287.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL059PA1]
 gi|313818018|gb|EFS55732.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL046PA2]
 gi|313819931|gb|EFS57645.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL036PA1]
 gi|313823421|gb|EFS61135.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL036PA2]
 gi|313828365|gb|EFS66079.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL063PA2]
 gi|313830135|gb|EFS67849.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL007PA1]
 gi|313832594|gb|EFS70308.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL056PA1]
 gi|313837950|gb|EFS75664.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL086PA1]
 gi|314914333|gb|EFS78164.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL005PA4]
 gi|314917653|gb|EFS81484.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL050PA1]
 gi|314919615|gb|EFS83446.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL050PA3]
 gi|314925787|gb|EFS89618.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL036PA3]
 gi|314930206|gb|EFS94037.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL067PA1]
 gi|314957187|gb|EFT01291.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL027PA1]
 gi|314957763|gb|EFT01866.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL002PA1]
 gi|314960867|gb|EFT04968.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL002PA2]
 gi|314963541|gb|EFT07641.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL082PA1]
 gi|314969876|gb|EFT13974.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL037PA1]
 gi|314973016|gb|EFT17112.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL053PA1]
 gi|314975512|gb|EFT19607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL045PA1]
 gi|314979746|gb|EFT23840.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL072PA2]
 gi|314984888|gb|EFT28980.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL005PA1]
 gi|314986054|gb|EFT30146.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL005PA2]
 gi|314988670|gb|EFT32761.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL005PA3]
 gi|315077164|gb|EFT49231.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL053PA2]
 gi|315079849|gb|EFT51825.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL078PA1]
 gi|315083217|gb|EFT55193.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL027PA2]
 gi|315086829|gb|EFT58805.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL002PA3]
 gi|315089922|gb|EFT61898.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL072PA1]
 gi|315096756|gb|EFT68732.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL038PA1]
 gi|315097984|gb|EFT69960.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL059PA2]
 gi|315100627|gb|EFT72603.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL046PA1]
 gi|327325170|gb|EGE66976.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA3]
 gi|327325200|gb|EGE67005.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA2]
 gi|327444001|gb|EGE90655.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL043PA1]
 gi|327449371|gb|EGE96025.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL013PA2]
 gi|327449401|gb|EGE96055.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL043PA2]
 gi|327451422|gb|EGE98076.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL087PA3]
 gi|327451603|gb|EGE98257.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL092PA1]
 gi|327451890|gb|EGE98544.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL083PA2]
 gi|328752104|gb|EGF65720.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL087PA1]
 gi|328755500|gb|EGF69116.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL025PA2]
 gi|328756284|gb|EGF69900.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL020PA1]
 gi|328761382|gb|EGF74909.1| 50S ribosomal protein L4 [Propionibacterium acnes HL099PA1]
          Length = 301

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+   ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +V   +   +  TK        L     +++   + D    L+ RN+  +++L    +
Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++ ++A 
Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206


>gi|50843317|ref|YP_056544.1| 50S ribosomal protein L4 [Propionibacterium acnes KPA171202]
 gi|81611203|sp|Q6A6M7|RL4_PROAC RecName: Full=50S ribosomal protein L4
 gi|50840919|gb|AAT83586.1| 50S ribosomal protein L4 [Propionibacterium acnes KPA171202]
 gi|315106072|gb|EFT78048.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL030PA1]
          Length = 301

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+   ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +V   +   +  TK        L     +++   + D    L+ RN+  +++L    +
Sbjct: 126 IFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++ ++A 
Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206


>gi|160942900|ref|ZP_02090139.1| hypothetical protein FAEPRAM212_00376 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445801|gb|EDP22804.1| hypothetical protein FAEPRAM212_00376 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103926|emb|CBL01470.1| LSU ribosomal protein L4P [Faecalibacterium prausnitzii SL3/3]
          Length = 207

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V +++G+    I +S+ +F + P +  +   +      +R G   +K R EV+  
Sbjct: 1   MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLANQRQGTQNTKIRMEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    + +  KV+ LAL   LSDK  +
Sbjct: 61  GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D     E KTK +V    A+      ++    +D  F  +A NI  +       
Sbjct: 121 GNMVVVDKFACDEYKTKAVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAGS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L   KL++S  A + LE+  
Sbjct: 181 VNTYDVLNADKLIISVDAAKKLEEVL 206


>gi|162446958|ref|YP_001620090.1| 50S ribosomal protein L4 [Acholeplasma laidlawii PG-8A]
 gi|189029489|sp|A9NED4|RL4_ACHLI RecName: Full=50S ribosomal protein L4
 gi|161985065|gb|ABX80714.1| large subunit ribosomal protein L4 [Acholeplasma laidlawii PG-8A]
          Length = 207

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 117/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ N  GE    +++++ IF + P Q +L  V+  Q    R G +K+K R+EV   
Sbjct: 1   MPTLNLFNQAGEKISEVALNDAIFGITPNQQVLYDVVNAQRAALRQGTAKTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP+P      + +KV+ LAL+ ALS    +
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPIPRSYAVKVNQKVKQLALKSALSYHVLA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++++DN+   E KTK  +     L L +  I+    +D+N  LA+ N+P   +  V  
Sbjct: 121 ENLVLVDNITVAEPKTKLFIEIMNNLKLDDRSIVLVDSVDKNLLLASNNLPGAVVREVSQ 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++VY++L+  ++VL++ A++  E+  
Sbjct: 181 VSVYELLKFKQVVLTQGAVKYYEEVL 206


>gi|50955565|ref|YP_062853.1| 50S ribosomal protein L4 [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81612625|sp|Q6ACZ6|RL4_LEIXX RecName: Full=50S ribosomal protein L4
 gi|50952047|gb|AAT89748.1| 50S ribosomal protein L4 [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 221

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 2/204 (0%)

Query: 1   MIE-LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M   + V +L G+  G I + + +F ++    ++ +V+  Q    R G  K+K R EV+ 
Sbjct: 1   MATSIDVVDLKGKKAGSIELPDSLFDVQTNIPLIHQVVTAQLAAARQGTHKTKNRGEVSG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K + QKGTGRAR  S    Q  GGG   GP P       PKK+ + AL  ALSD+  
Sbjct: 61  AGRKPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRDYSQRTPKKMIAAALLGALSDRAR 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            + I  V      +   TK +V     +  S  +++   + D     + RNI +++ L  
Sbjct: 121 GSRIHAVQAFTAGEAPSTKAVVELLSGVATSKHVLVVLERDDELAFKSVRNIASVHALTY 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    +V +++A+E  
Sbjct: 181 DQLNAYDVLVSDDIVFTQAALEGF 204


>gi|77918316|ref|YP_356131.1| 50S ribosomal protein L4 [Pelobacter carbinolicus DSM 2380]
 gi|109893615|sp|Q3A6P6|RL4_PELCD RecName: Full=50S ribosomal protein L4
 gi|77544399|gb|ABA87961.1| LSU ribosomal protein L4P [Pelobacter carbinolicus DSM 2380]
          Length = 206

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 121/206 (58%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V +++        +S+++F  + ++ ++  ++R+Q   +R G S +K RS VA  
Sbjct: 1   MAKIAVYDINRNQVSERELSDEVFNAEVKEYLIHDMVRYQLAARRQGTSAAKNRSAVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  +     F GGG AFGP P      L +KV+  ALR ALS +F  
Sbjct: 61  GKKPYRQKGTGNARQGTIRAPHFVGGGAAFGPSPRDFSFKLNRKVKKAALRSALSARFKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++   ++  TK +V      +LSN L++ G + +RN +L+ARN+P++ +L  +G
Sbjct: 121 ERVAVLNDFQLEKIGTKAVVEVLNRFELSNVLVVVG-EDNRNLELSARNLPHVKVLKAEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD++    LV+++ A+E LE   
Sbjct: 180 VNVYDLMNHRNLVVTEGAVEQLEGAL 205


>gi|2113867|emb|CAA73673.1| rplD [Mycobacterium bovis BCG]
          Length = 223

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V+   G+  G I +  ++F +     ++ +V+  Q    R G   +K R EV+  G 
Sbjct: 10  KIDVKTPAGKVDGAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGR 69

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  
Sbjct: 70  KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 129

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  + + +  +   TK       +L     +++   + D   + + RN+P +++L    +
Sbjct: 130 IHAITELVEGQNPSTKSARAFLVSLTERKQVLVVIGRSDEGRRESVRNLPGVHILAPDQL 189

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+LR   +V S  A+ A
Sbjct: 190 NTYDVLRADDVVFSVEALNA 209


>gi|313836022|gb|EFS73736.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL037PA2]
 gi|314929561|gb|EFS93392.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL044PA1]
 gi|314970554|gb|EFT14652.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL037PA3]
 gi|328906229|gb|EGG26004.1| ribosomal protein L4/L1 family protein [Propionibacterium sp. P08]
          Length = 301

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDVFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+ + ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +V   +   +  TK        L   + +++   + D    L+ RN+  +++L    +
Sbjct: 126 IFIVTSLVDGDKPSTKQAKAVLSGLAELSKVLVVLARSDEVDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++  +A 
Sbjct: 186 NTYDVVNSRTIVFSQAGFDAF 206


>gi|258542028|ref|YP_003187461.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-01]
 gi|256633106|dbj|BAH99081.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-01]
 gi|256636163|dbj|BAI02132.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-03]
 gi|256639218|dbj|BAI05180.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-07]
 gi|256642272|dbj|BAI08227.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-22]
 gi|256645327|dbj|BAI11275.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-26]
 gi|256648382|dbj|BAI14323.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-32]
 gi|256651435|dbj|BAI17369.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654426|dbj|BAI20353.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-12]
          Length = 204

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 80/205 (39%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ ++ LD    G  ++ ++IFA+ P+  I+ARV+ WQ  ++R G  K KG  EV+ T 
Sbjct: 1   MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    Q+R GG   GPV     + LPKKVR L L  ALS K    
Sbjct: 61  KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +  S   KT  L  + ++L    + +I    +D NF  AARN+P I++LP  G 
Sbjct: 121 KLIVLQS-ASGVDKTSELAKKLKSLG-WTSALIVDAAVDENFGRAARNLPKIDILPTIGA 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL    L ++++ +E L++R 
Sbjct: 179 NVYDILNHEVLAITQAGLEGLKERL 203


>gi|313112879|ref|ZP_07798525.1| ribosomal protein L4/L1 family protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624784|gb|EFQ08093.1| ribosomal protein L4/L1 family protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 207

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V +++G+    I +S+ +F + P +  +   +      +R G   +K R EV+  
Sbjct: 1   MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLANQRQGTQNTKIRMEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    + +  KV+ LAL   LSDK  +
Sbjct: 61  GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D     E KTK +V    A+      ++    +D  F  +A NI  +       
Sbjct: 121 GNMVVVDKFACDEYKTKTVVAMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAGS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L   KL++S  A + LE+  
Sbjct: 181 VNTYDVLNADKLIISVDAAKKLEEVL 206


>gi|170780734|ref|YP_001709066.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155302|emb|CAQ00405.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 218

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 1/203 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V +  G   G + +   IF ++    ++ +V+  Q    R G  K+KGR EV+  G 
Sbjct: 6   QLDVLDATGAVTGSVDLPASIFDVQTNVPLIHQVVVAQLAAARQGTHKTKGRGEVSGAGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q  GGG   GP P       PKK+ + AL  ALSD+     
Sbjct: 66  KPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRNYSQRTPKKMIAAALLGALSDRARGAR 125

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + VI++L +     TK +V     +  S  ++I   + D     + RNIP +++L    +
Sbjct: 126 LHVIESLSAGDVPSTKTVVALLEGIATSKHVLIVLERTDEVSLRSVRNIPTVHVLSYDQL 185

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N YD+L    +V +K A +A  +
Sbjct: 186 NAYDVLVSDDIVFTKGAFDAFVE 208


>gi|282855207|ref|ZP_06264539.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           J139]
 gi|282581795|gb|EFB87180.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           J139]
 gi|314982252|gb|EFT26345.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL110PA3]
 gi|315090439|gb|EFT62415.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           HL110PA4]
          Length = 301

 Score =  192 bits (487), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+ + ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +V   +   +  TK        +     +++   + D    L+ RN+  +++L    +
Sbjct: 126 IFVVTSLVDGDKPSTKQAKVVLSGVAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++ ++A 
Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206


>gi|319408764|emb|CBI82421.1| 50S ribosomal protein L4 [Bartonella schoenbuchensis R1]
          Length = 206

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 118/206 (57%), Positives = 152/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ  R++ G  +S+GRS+VA TG
Sbjct: 1   MDLVIKTLDGNEAGKLKVSEHIFGLAPREDILQRVVRWQLARRQQGTHQSQGRSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV    VH LPKK R+L L  ALS K  +N
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVARSHVHILPKKSRALGLCLALSVKLKTN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++V+D L  ++ KTK L   F  L  +NAL+I G +++ NF  AA NIPNI++LPVQGI
Sbjct: 121 DLIVVDELNVQDAKTKVLAKSFSKLGFNNALLIGGKEINMNFSRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR +KLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRNKLVLSKAAVEALEERFK 206


>gi|183981054|ref|YP_001849345.1| 50S ribosomal protein L4, RplD [Mycobacterium marinum M]
 gi|226730696|sp|B2HSN2|RL4_MYCMM RecName: Full=50S ribosomal protein L4
 gi|183174380|gb|ACC39490.1| 50S ribosomal protein L4, RplD [Mycobacterium marinum M]
          Length = 224

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           E+ V+  DG+  G +++  ++F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 13  EIQVKTPDGKVDGSVALPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 72

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  
Sbjct: 73  KPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 132

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  +   TK   T    +     +++   + D+    + RN+P +++L    +
Sbjct: 133 IHAVTELVAGQTPSTKSAKTFLATITDRKQVLVVIGRDDQTGVKSVRNLPGVHILSPDQL 192

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+LR   +V S  A+ A
Sbjct: 193 NTYDVLRADDVVFSVEALNA 212


>gi|319899098|ref|YP_004159191.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73]
 gi|319403062|emb|CBI76617.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73]
          Length = 206

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 117/206 (56%), Positives = 152/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG++ G + VSE +F L P++ IL RV+RWQ  R++ G  +S+GRS+V+ TG
Sbjct: 1   MDLMIKTLDGKEAGKVKVSESVFGLIPREDILQRVVRWQLTRRQKGTHQSQGRSDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV     H LPKKVR+L LR ALS K  ++
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHGLPKKVRALGLRLALSAKLKAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++V+D L  ++ KTK L   F  L  +NAL+I G ++D NF  AA NIPNI++LPVQGI
Sbjct: 121 DLIVVDELNIRDAKTKVLNANFSKLGFNNALLIGGKEIDVNFFRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK A+EALE+RFK
Sbjct: 181 NVYDILRRGKLVLSKEAVEALEERFK 206


>gi|118466008|ref|YP_883605.1| 50S ribosomal protein L4 [Mycobacterium avium 104]
 gi|254776906|ref|ZP_05218422.1| 50S ribosomal protein L4 [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|166234686|sp|A0QL17|RL4_MYCA1 RecName: Full=50S ribosomal protein L4
 gi|118167295|gb|ABK68192.1| ribosomal protein L4/L1 family protein [Mycobacterium avium 104]
          Length = 217

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 2/203 (0%)

Query: 1   MI-ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  +L V+   G+ +G I +  ++F       ++ +V+  Q    R G   +K R +V+ 
Sbjct: 1   MALKLDVKAPGGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  
Sbjct: 61  GGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRAR 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
           +  I  + + +  +   TK        L     +++   + D     + RN+P +++L  
Sbjct: 121 NGRIHAITELVSGQTPSTKSAKAFLGTLTERKQVLVVIGRSDEAGAKSVRNLPGVHILAP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEA 201
             +N YD+LR   +V S  A+ A
Sbjct: 181 DQLNTYDVLRADDVVFSVEALRA 203


>gi|222616220|gb|EEE52352.1| hypothetical protein OsJ_34399 [Oryza sativa Japonica Group]
          Length = 353

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 118/201 (58%), Gaps = 1/201 (0%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           V N   EDKG + +  D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K Y
Sbjct: 146 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 205

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     ++V
Sbjct: 206 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 265

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
            D+L     KTK +V     ++ +  + ++DG  +D+  +LA +N+  +N+LP  G+NVY
Sbjct: 266 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 325

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            IL+   LV++++AI  + +R
Sbjct: 326 SILQHDTLVMTRNAINRIVER 346


>gi|168041144|ref|XP_001773052.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675599|gb|EDQ62092.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 269

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ V N   EDKG+ +++ D+F +  +  ++ RV+RWQ  ++R G + +KG  EV+ TG
Sbjct: 57  VEVKVTNFQSEDKGLATLAGDVFDVPIRPDVVHRVVRWQLAKRRQGTASTKGIHEVSGTG 116

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+GRARH S    QFRGG    GP P      L K+VR L L+ ALS +    
Sbjct: 117 RKPGPQKGSGRARHGSLRGPQFRGGATQHGPKPRSHEIGLQKQVRRLGLKVALSSRVAEG 176

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPVQ 179
            + V D++     KT+ +      ++    ++I      ++ +   A  N+  +N+LP +
Sbjct: 177 KLKVFDSVEPPTLKTREMERLIADIEGCKKVLIVDDAETVNESLCRATGNLHYVNVLPAK 236

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+NVY IL+   LV+S  AI  +E+R 
Sbjct: 237 GLNVYSILQHDTLVMSVGAIRRIEERL 263


>gi|150020846|ref|YP_001306200.1| 50S ribosomal protein L4 [Thermosipho melanesiensis BI429]
 gi|166199920|sp|A6LLL4|RL4_THEM4 RecName: Full=50S ribosomal protein L4
 gi|149793367|gb|ABR30815.1| ribosomal protein L4/L1e [Thermosipho melanesiensis BI429]
          Length = 221

 Score =  191 bits (486), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 117/220 (53%), Gaps = 14/220 (6%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE+ G + + E++FA++P Q ++ R +  Q    R G + +K R EV+  
Sbjct: 1   MAKVDLFNIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K ++QK TGRAR  S     +R GG A GP P +    L KK++ LAL+ ALS +   
Sbjct: 61  GRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA----LDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           N+++V+D++  ++ +TK L    +           ++        N +++ RNIP + +L
Sbjct: 121 NNLVVVDDIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVL 180

Query: 177 ----------PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
                      + G+NVYDIL   KLVL +  ++ +E+  
Sbjct: 181 IADNPGVDRVNIDGLNVYDILNHDKLVLLQGTVQKIEEVL 220


>gi|41410260|ref|NP_963096.1| 50S ribosomal protein L4 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|46577156|sp|P61066|RL4_MYCPA RecName: Full=50S ribosomal protein L4
 gi|41399094|gb|AAS06712.1| RplD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 217

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 98/203 (48%), Gaps = 2/203 (0%)

Query: 1   MI-ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  +L V+   G+ +G I +  ++F       ++ +V+  Q    R G   +K R +V+ 
Sbjct: 1   MALKLDVKAPGGKVEGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGDVSG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  
Sbjct: 61  GGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRAR 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
           +  I  + + +  +   TK       AL     +++   + D     + RN+P +++L  
Sbjct: 121 NGRIHAITELVSGQTPSTKSAKAFLGALTERKQVLVVIGRSDEAGAKSVRNLPGVHILAP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEA 201
             +N YD+LR   +V S  A+ A
Sbjct: 181 DQLNTYDVLRADDVVFSVEALRA 203


>gi|242072798|ref|XP_002446335.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor]
 gi|241937518|gb|EES10663.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor]
          Length = 333

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 79/201 (39%), Positives = 119/201 (59%), Gaps = 1/201 (0%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           V N   EDKG + +  D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K Y
Sbjct: 126 VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 185

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     ++V
Sbjct: 186 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 245

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
            ++L     KTK +V   R +D +  + ++DG  +D+  +LA +N+  +N+LP  G+NVY
Sbjct: 246 FEDLEVPSHKTKNIVQYIRQMDDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 305

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            IL+   LV+S++AI  + +R
Sbjct: 306 SILQHDTLVMSRAAINRIVER 326


>gi|163868649|ref|YP_001609858.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476]
 gi|189029491|sp|A9IW26|RL4_BART1 RecName: Full=50S ribosomal protein L4
 gi|161018305|emb|CAK01863.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476]
          Length = 206

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 118/206 (57%), Positives = 154/206 (74%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ  R++ G  +S+GRS+V+ TG
Sbjct: 1   MDLVIKTLDGHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV     H LPKK+R+L LR ALS K  + 
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHAHDLPKKIRALGLRLALSAKLKAK 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++V+D L  K+ KTK LV+ F  L  +NAL+I G ++D NF  AA NIPNI++LP+QGI
Sbjct: 121 DLIVVDELAVKDAKTKKLVSHFSKLGFNNALLIGGQEIDINFFRAASNIPNIDVLPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR SKLVLSK+A+EALE+RF+
Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFR 206


>gi|289424792|ref|ZP_06426574.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           SK187]
 gi|289154755|gb|EFD03438.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
           SK187]
          Length = 301

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V ++ G+  G   +  D+F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 6   TIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q+ GGG   GP P       PKK+   ALR ALSD    N 
Sbjct: 66  KPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDMARDNR 125

Query: 123 I-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + +V   +   +  TK        L     +++   + D    L+ RN+  +++L    +
Sbjct: 126 MFVVTSLVDGDKPSTKQAKAVLSGLAELRKVLVVLDRSDEIDWLSVRNLSEVHVLAADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V S++ ++A 
Sbjct: 186 NTYDVVNARTIVFSQAGLDAF 206


>gi|295101415|emb|CBK98960.1| LSU ribosomal protein L4P [Faecalibacterium prausnitzii L2-6]
          Length = 207

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 102/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V +++G+    I +S+ +F + P +  +   +      +R G   +K R EV+  
Sbjct: 1   MAKFNVVDMNGQHVSEIELSDAVFGITPNEKAVHIAVVNFLANQRQGTQNTKIRMEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S    Q+  GG A GP P    + +  KV+ LAL   LSDK  +
Sbjct: 61  GKKPWRQKGTGHARQGSIRAPQWTHGGVALGPKPRSYNYHINNKVKRLALLSVLSDKAAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D     E KTK +V+   A+      ++    +D  F  +A NI  +       
Sbjct: 121 GNMVVVDKFACDEYKTKTVVSMLNAVGAGKKNLLVNETVDAKFVKSAGNIAGVKTTFAGS 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L   KL++S  A + LE+  
Sbjct: 181 VNTYDVLNADKLIISVGAAKKLEEVL 206


>gi|104773543|ref|YP_618523.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513540|ref|YP_812446.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275690|sp|Q04C14|RL4_LACDB RecName: Full=50S ribosomal protein L4
 gi|122397384|sp|Q1GBL7|RL4_LACDA RecName: Full=50S ribosomal protein L4
 gi|103422624|emb|CAI97232.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116092855|gb|ABJ58008.1| LSU ribosomal protein L4P [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|325125176|gb|ADY84506.1| 50S ribosomal protein L4 [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 205

 Score =  191 bits (485), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 118/206 (57%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    + + +G + G +++++++F+++P + ++   +  Q   KR G SK K RS V   
Sbjct: 1   MANFKLMDQNGNNAGEVTLNDNVFSVEPNEAVVFDAIIRQRAGKRQGTSKVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    +++P+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGVVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KT+  V     L L   +++     D+N QL+A+N+P + ++PV G
Sbjct: 121 QNLVVLDKLTMDAPKTRDFVAILNGLKLEGKVLVVSD--DKNVQLSAKNLPKVKVVPVNG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D +   KLVL++  ++ +E+  
Sbjct: 179 LNVEDAVNYDKLVLTQDDVKKIEEVL 204


>gi|269796254|ref|YP_003315709.1| 50S ribosomal protein L4P [Sanguibacter keddieii DSM 10542]
 gi|269098439|gb|ACZ22875.1| LSU ribosomal protein L4P [Sanguibacter keddieii DSM 10542]
          Length = 234

 Score =  191 bits (485), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +  G+  G   +  ++F ++    ++ +V+  Q    R G   +K R EV   G 
Sbjct: 6   TVDVIDAKGKKAGTADLPAEVFDVQTNIPLIHQVVVAQLAAARQGTHDTKNRGEVRGGGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 66  KPYKQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARAGR 125

Query: 123 IMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+          TK  +T    L     +++   + D     + RN   ++LL    +
Sbjct: 126 IHVVTGFGIDGSPSTKQALTSLANLAPRRNVLVVLERGDELTVKSLRNAEQVHLLVADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V +K A++A 
Sbjct: 186 NTYDVLVSDDVVFTKGALDAF 206


>gi|294101629|ref|YP_003553487.1| ribosomal protein L4/L1e [Aminobacterium colombiense DSM 12261]
 gi|293616609|gb|ADE56763.1| ribosomal protein L4/L1e [Aminobacterium colombiense DSM 12261]
          Length = 207

 Score =  191 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  GE    + +S+ +FA       + +V+  Q    R G    KGR EV   
Sbjct: 1   MPTVKLVSFQGEQVSDLQLSDSVFAAPIHVPAMHQVVVAQLANLRQGTHSCKGRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRARH S     + GGG A GP P      + KKVR LALR ALS K   
Sbjct: 61  GRKPWRQKHTGRARHGSTRSPIWVGGGVAHGPSPRDYSQKVNKKVRRLALRSALSLKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V+D++      TK ++     +      +I   + +     + RNIP+   + V  
Sbjct: 121 NLLTVVDHIDLDTPSTKEMLGFIDKMG-VKKPLIVLHEPNDAVSKSVRNIPDARAINVGN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L    L+L++ A+  +E+ +
Sbjct: 180 INVYDLLNYQNLILTQEAVARIEEVY 205


>gi|169630899|ref|YP_001704548.1| 50S ribosomal protein L4 [Mycobacterium abscessus ATCC 19977]
 gi|169242866|emb|CAM63894.1| 50S ribosomal protein L4 [Mycobacterium abscessus]
          Length = 213

 Score =  191 bits (484), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 98/202 (48%), Gaps = 1/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++++V+   G+  G I +  ++F       +L +V+  Q    R G   +K R  V+  G
Sbjct: 1   MKIAVKAPGGKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  + 
Sbjct: 61  KKPYRQKGTGRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNG 120

Query: 122 DIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            I  V + +  +E  TK   +    +     L++   + D     + RN+PN+++L    
Sbjct: 121 RIHAVTELVAGQEPSTKSAKSFLGEITDRKQLLVVLGRDDLASVKSVRNLPNVHVLAYDQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L+   +V S  A+   
Sbjct: 181 LNTYDVLKADDVVFSVEALNGF 202


>gi|296119210|ref|ZP_06837780.1| ribosomal protein L4/L1 family protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967836|gb|EFG81091.1| ribosomal protein L4/L1 family protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 221

 Score =  191 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V+  +G+  G + +  +IF  +    ++ +V+  Q    R G   +K R EV   G 
Sbjct: 5   KLDVQTAEGKTNGSVELPAEIFDAEVSIALMHQVVNAQLAAARQGTHSTKTRGEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GP P       PKK+   AL  ALSD+  +  
Sbjct: 65  KPFRQKGTGRARQGSIRAPHYTGGGTVHGPKPRDYAQRTPKKMIKAALFGALSDRARNER 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI+ LV+ +   TK        L     +++   + D N + +A N+PN+++L    +
Sbjct: 125 IHVIEELVAGQTPSTKSAKAFIERLTDRKTILLVVGREDLNARRSANNLPNVHILDAGQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+ +  +R
Sbjct: 185 NTYDVLNADDVVFSVEALHSFINR 208


>gi|297201730|ref|ZP_06919127.1| ribosomal protein L4/L1 [Streptomyces sviceus ATCC 29083]
 gi|197710895|gb|EDY54929.1| ribosomal protein L4/L1 [Streptomyces sviceus ATCC 29083]
          Length = 218

 Score =  191 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  G+  G + +  +IF ++     +L +V+  Q    R G  K K R EV  
Sbjct: 1   MSTIDILSPSGDTAGTVELPAEIFDVEKISIPLLHQVVVAQLAAARQGTHKVKRRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVID-NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
           +N I V+   +  +   TK   T F  +     L++   + D    L+ARN+P +++L  
Sbjct: 121 NNRIHVVSGVIEGESPSTKAAKTLFGKISERKNLLLVIDRADEAAWLSARNLPQVHILEP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    +V +++A E+ 
Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204


>gi|117924156|ref|YP_864773.1| 50S ribosomal protein L4P [Magnetococcus sp. MC-1]
 gi|166234681|sp|A0L5X4|RL4_MAGSM RecName: Full=50S ribosomal protein L4
 gi|117607912|gb|ABK43367.1| LSU ribosomal protein L4P [Magnetococcus sp. MC-1]
          Length = 207

 Score =  191 bits (484), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 117/206 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MI++ V++ + ++     ++E +F  + +  +L   + +Q  ++R+G +   GRS+V   
Sbjct: 1   MIQVPVKDANNQEVRSTELNESVFGREIRADLLGMAVNYQLAKRRLGTATVLGRSDVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  +    QFR GG  FGP      H L KKVR LAL+ ALS K  S
Sbjct: 61  GKKPYRQKGTGNARQGTIRAPQFRTGGIVFGPQQRDYSHKLNKKVRKLALQTALSVKASS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L     KTK +      L  + +  +   +L     L+ARNIPN+ +  V G
Sbjct: 121 EEMVVVDKLELASIKTKEMKALLSTLGAARSTFLVVKELSNEIVLSARNIPNVMVADVDG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LR  KLV+++ A+ +LE++ 
Sbjct: 181 VNVYDLLRYEKLVITEEAVRSLEEKL 206


>gi|149922210|ref|ZP_01910648.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1]
 gi|149816950|gb|EDM76435.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1]
          Length = 218

 Score =  190 bits (483), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 131/206 (63%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L+V++L+G D   I VS+++FA + ++ +L  V+RWQ  +KR G +K+K RSEV  T
Sbjct: 1   MAKLNVKDLEGNDVAEIEVSDEVFAAEVKEHLLWEVVRWQRAKKRAGTAKTKERSEVHGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
            SKMY QKGTG ARH S+ V+ FRGGG+  GP P     ++ KK R+ ALR ALS +   
Sbjct: 61  RSKMYRQKGTGNARHGSRRVNVFRGGGQVHGPRPRDYTFSVNKKARAGALRSALSLRASE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++VI +    + KT+ L      L+   +L++DG   + +   +ARN+P    +  +G
Sbjct: 121 GNLVVIRDFEVPDAKTRNLAAALGKLNAPKSLLVDGGD-NMSLARSARNLPTAQHIVPEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR  KL++S+S++ ALE R 
Sbjct: 180 VNVYDILRFPKLLISESSLRALEARL 205


>gi|289641165|ref|ZP_06473333.1| ribosomal protein L4/L1e [Frankia symbiont of Datisca glomerata]
 gi|289509106|gb|EFD30037.1| ribosomal protein L4/L1e [Frankia symbiont of Datisca glomerata]
          Length = 263

 Score =  190 bits (483), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V    G + G + +  +IF +     ++ +V+  Q    R G   ++ R EV   G 
Sbjct: 27  TVVVHAPAGGEAGSVDLPGEIFDVALNVPLIHQVVVAQLAAARQGTHSTRTRGEVRGGGR 86

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+     
Sbjct: 87  KPYRQKGTGRARQGSLRAPQFTGGGVVHGPKPRSYEQRTPKKMKAAALRGALSDRARGGR 146

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+ + VS     TK  VT  R +     +++     D     + RNIP+++LL    +
Sbjct: 147 VHVVSSFVSGDTPSTKTAVTALRTITDVRRVLVVVDHTDELTWKSLRNIPSVHLLDPGQL 206

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V ++ A+    +R
Sbjct: 207 NTYDVLVSDDVVFTRDALATFVER 230


>gi|227494546|ref|ZP_03924862.1| ribosomal protein L4 [Actinomyces coleocanis DSM 15436]
 gi|226832280|gb|EEH64663.1| ribosomal protein L4 [Actinomyces coleocanis DSM 15436]
          Length = 212

 Score =  190 bits (483), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 1/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
            ++ +  ++G+  G I +   IF  +    ++ +V+  Q    R G   +K R +VA  G
Sbjct: 3   AKVEITGVNGKSAGTIELPAAIFDAETNVPLIHQVVVAQLAAARQGTHATKTRGQVAGGG 62

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S     F GGG   GP P       PKK+++ AL  ALSD+  + 
Sbjct: 63  KKPYRQKGTGRARQGSIRAPHFTGGGVVHGPQPRDYSQRTPKKMKAGALYGALSDRARNG 122

Query: 122 DIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            I V+  +V  ++  TK   T    L      ++   + D    L+ RN+P +++L V  
Sbjct: 123 RIHVVTAVVEGEKPSTKAARTLLEGLCGLRNTLVVVSREDVTAVLSVRNLPQVHVLFVDQ 182

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++R   +V ++ A+E  
Sbjct: 183 LNTYDVMRSENVVFTQVALETF 204


>gi|256825885|ref|YP_003149845.1| 50S ribosomal protein L4P [Kytococcus sedentarius DSM 20547]
 gi|256689278|gb|ACV07080.1| LSU ribosomal protein L4P [Kytococcus sedentarius DSM 20547]
          Length = 223

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF +     ++ +V+  Q    R G   +K R+EV   
Sbjct: 1   MPTIDIISPAGKATGSVELPAEIFDVAANVPLIHQVVVAQLAAARQGTHSTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GRKPYRQKGTGRARQGSTRAPQFAGGGIVHGPQPRDYAQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I V+  +       +K +    R       L++   + D    ++ RN+ N++ L   
Sbjct: 121 GRIHVLSAVLEGDAPSSKAVNALLRGQTERRNLLVVLERGDELSLMSLRNLQNVHALFAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD++    +  +  A++A 
Sbjct: 181 QLNTYDVMCADDVFFTAGALDAF 203


>gi|225850736|ref|YP_002730970.1| ribosomal protein, L4/L1 family [Persephonella marina EX-H1]
 gi|225645048|gb|ACO03234.1| ribosomal protein, L4/L1 family [Persephonella marina EX-H1]
          Length = 207

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V N+  E+ G + +S+ +F  + ++  +  V++WQ   +R G + +K R+EV  + 
Sbjct: 1   MEANVVNIKKENVGTVQLSDAVFNTEVKEHTVWEVIKWQLASRRAGTASTKTRAEVRGSR 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+  QKGTG ARH  +  + F GGG   GP P    +ALPKKVR  AL+  LS K    
Sbjct: 61  RKILPQKGTGNARHGDRKANIFVGGGVVHGPHPRDYYYALPKKVRKKALKGVLSMKLRDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++ VI++    E KTK  +   +  D     +++   + D N   + RN+P   +L V+G
Sbjct: 121 ELTVIEDFTFDEPKTKKAIEVLKNFDLDKAKVLLVLAEKDMNVIKSFRNLPKAKVLLVEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YDIL    ++++KSA+E + +R 
Sbjct: 181 LNTYDILNADHVLVTKSAVEKINERL 206


>gi|224370690|ref|YP_002604854.1| 50S ribosomal protein L4 [Desulfobacterium autotrophicum HRM2]
 gi|259491553|sp|C0Q9X2|RL4_DESAH RecName: Full=50S ribosomal protein L4
 gi|223693407|gb|ACN16690.1| RplD [Desulfobacterium autotrophicum HRM2]
          Length = 207

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 126/206 (61%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N  GE      +++++F++  ++ +L  V+R Q  R+R G +KSKGRSEV+ +
Sbjct: 1   MAAVDVLNRSGEKVSEAFLADEVFSIPVKKSVLHDVVRMQLARRRSGTAKSKGRSEVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTG AR  S      RGGG  FGP P    +A+PKKVR+LAL+ ALS K  +
Sbjct: 61  TRKLYRQKGTGNARSGSVKSPLRRGGGVIFGPAPRSYAYAIPKKVRALALKMALSSKLAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N++ VID       KTK   +    L L N LI+     DRN  L+ARNIP++ ++  +G
Sbjct: 121 NELSVIDTFAMDSIKTKEFDSIIDHLGLKNTLIVIDGD-DRNLVLSARNIPDVKVIRTEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+   L+L +SAI+ +E RF
Sbjct: 180 LNVYDILKYDNLLLIESAIKEIEGRF 205


>gi|227538717|ref|ZP_03968766.1| ribosomal protein L4 [Sphingobacterium spiritivorum ATCC 33300]
 gi|300770250|ref|ZP_07080129.1| ribosomal protein L4/L1 family protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227241636|gb|EEI91651.1| ribosomal protein L4 [Sphingobacterium spiritivorum ATCC 33300]
 gi|300762726|gb|EFK59543.1| ribosomal protein L4/L1 family protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 209

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V NL G++ G  + + E +F L+P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MEVKVLNLSGKETGAKVQLPESVFGLEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTG AR  S     F GGG+ FGP P      L KK++ LA + ALS K   
Sbjct: 61  TRKLHKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKQLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+D +     KTK  V+   A        ++     D N  L++RN+    ++   
Sbjct: 121 NNIVVLDAVSFDTIKTKNYVSLVAALNVADEKTLLVLPAYDNNVYLSSRNLKKAKVVSAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YD+L  +KL+L+  +++ LE+ F
Sbjct: 181 QLNTYDVLNATKLLLTTDSVKTLEEAF 207


>gi|19704965|ref|NP_602460.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|296329219|ref|ZP_06871720.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|46577280|sp|Q8RIF6|RL4_FUSNN RecName: Full=50S ribosomal protein L4
 gi|19712867|gb|AAL93759.1| LSU ribosomal protein L1E [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|296153575|gb|EFG94392.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 209

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ NL GE  G + V++ +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPV 178
            +++V+D    +  KTK +V     +D     +     L  D N  L+ARN+ N  +L  
Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I VY +L+  K++L+K A+  +E+  
Sbjct: 181 NEIGVYWLLKQEKVILTKEALATVEEVL 208


>gi|88606786|ref|YP_504893.1| 50S ribosomal protein L4 [Anaplasma phagocytophilum HZ]
 gi|109893574|sp|Q2GL58|RL4_ANAPZ RecName: Full=50S ribosomal protein L4
 gi|88597849|gb|ABD43319.1| ribosomal protein L4 [Anaplasma phagocytophilum HZ]
          Length = 208

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 115/205 (56%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+++ N+  E  G I ++  +F L+P++ +L  V+ WQ  ++R G  K+KG S+++ T 
Sbjct: 1   MEVNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGG   FGPVP    ++L KKVR L L+ ALS K  +N
Sbjct: 61  AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAAN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+L     KT      F      ++ ++           A RN+  ++LL   GI
Sbjct: 121 KLVVLDSLDVDLKKTADAKGVFGNFAGHSSYLVVSESCKEEVVRACRNLRGVDLLKCVGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV DIL+   ++L+   +++LE R 
Sbjct: 181 NVLDILKHDCVILTVDTVKSLEGRL 205


>gi|49474403|ref|YP_032445.1| 50S ribosomal protein L4 [Bartonella quintana str. Toulouse]
 gi|81646966|sp|Q6FZC3|RL4_BARQU RecName: Full=50S ribosomal protein L4
 gi|49239907|emb|CAF26305.1| 50s ribosomal protein l4 [Bartonella quintana str. Toulouse]
          Length = 206

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/206 (58%), Positives = 151/206 (73%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L +R LDG + G + VSE IF L P++ IL RV+RWQ  R + G   S+GRS+V+ TG
Sbjct: 1   MDLVIRTLDGNEAGRLKVSESIFGLVPREDILQRVVRWQLARHQQGTHHSQGRSDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV     H LPKK+R L LR ALS K  +N
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRVLGLRLALSAKLKAN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++++D L  KE KTK LV+ F  L   NAL++ G ++D NF  AA NIPNI++LP+QGI
Sbjct: 121 DLIIVDELNVKEAKTKMLVSCFSKLGFKNALLVGGKEIDINFSRAASNIPNIDILPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR SKLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFK 206


>gi|237743900|ref|ZP_04574381.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1]
 gi|256027489|ref|ZP_05441323.1| 50S ribosomal protein L4 [Fusobacterium sp. D11]
 gi|260495202|ref|ZP_05815330.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33]
 gi|289765451|ref|ZP_06524829.1| LSU ribosomal protein L1E [Fusobacterium sp. D11]
 gi|229432931|gb|EEO43143.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1]
 gi|260197259|gb|EEW94778.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33]
 gi|289717006|gb|EFD81018.1| LSU ribosomal protein L1E [Fusobacterium sp. D11]
          Length = 209

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ NL GE  G + V++ +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPV 178
            +I+V+D    +  KTK +V     +D     +     L  D N  L+ARN+ N  +L  
Sbjct: 121 GNILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I VY +L+  K++L+K A+  +E+  
Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEEVL 208


>gi|319404424|emb|CBI78027.1| 50S ribosomal protein L4 [Bartonella rochalimae ATCC BAA-1498]
          Length = 206

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 116/206 (56%), Positives = 153/206 (74%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG++ G + VSE+IF L P++ IL RV+RWQ  R++ G  +S+GRS+V+ TG
Sbjct: 1   MDLVIKTLDGKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV     H LPKKVR+L LR ALS K  ++
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHNLPKKVRALGLRLALSVKLKTD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D L  ++ KTK L   F  L  +NAL+I G ++D NF  AA NIPNI++LPVQGI
Sbjct: 121 NLIIVDELSIRDAKTKMLNMNFSKLGFNNALLIGGKEVDVNFFRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR SKLVLSK A+E LE+RFK
Sbjct: 181 NVYDILRRSKLVLSKEAVETLEERFK 206


>gi|228470744|ref|ZP_04055595.1| ribosomal protein L4/L1 family protein [Porphyromonas uenonis 60-3]
 gi|228307601|gb|EEK16597.1| ribosomal protein L4/L1 family protein [Porphyromonas uenonis 60-3]
          Length = 207

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELS+ N+ GED G  I++   +F ++P    +   ++     +R G  K+K RSE++ +
Sbjct: 1   MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKTKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTG AR    + +  RGG + FGP P      L KK+R LA R AL+ K   
Sbjct: 61  TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N IMV+D L  +  KTK  V+  +A        +    Q++    L+ARNIP ++++  Q
Sbjct: 121 NQIMVLDQLSFEAPKTKSFVSMAKALNVDGQKTLYVVSQIEDTVALSARNIPGVSIIRAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L C K+V ++ A+  + + F
Sbjct: 181 DLNTYCVLDCRKIVFTEDALAQVNEMF 207


>gi|119478131|ref|ZP_01618210.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2143]
 gi|119448837|gb|EAW30080.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2143]
          Length = 206

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL+   +   +  G + VS+  FA +  + ++ +V+       R G    K RS V+  
Sbjct: 1   MELATFTVGKKKATGSVEVSDGTFAKEYNEDLVHQVVTSYLAGARQGTRAQKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     +R GG  F   P      + +K+   ALR  LS+    
Sbjct: 61  GKKPWRQKGTGRARAGTIRSPIWRSGGVTFAAQPQDHSQKVNRKMYRAALRSILSELARQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D L  KE KTK L+       L  AL++    L  N  LA+RN+  ++ + V+G
Sbjct: 121 ERLIVVDELSLKEPKTKLLIKMLGGFGLERALLV-SDDLSENLYLASRNLYKVDAVDVEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N   ++   K+V++  A++  E+  
Sbjct: 180 VNPVSLVGAEKVVITVPALKKFEEML 205


>gi|260655382|ref|ZP_05860870.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33
           E1]
 gi|260629830|gb|EEX48024.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33
           E1]
          Length = 207

 Score =  189 bits (481), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N  GE  G + +S+ +F +      + +V+  Q    R G + +K R EV   
Sbjct: 1   MPVIKILNFAGEVVGDLELSDAVFGVPFHSSAIHQVVVAQQANARQGTACAKDRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     + GGG   GP P      + KKVR+LA+R ALS +   
Sbjct: 61  GRKPWRQKHTGRARAGSIRSPLWAGGGVVHGPKPRDYFLKVNKKVRALAMRSALSVRAGE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + +  ++    +   TK +++   A+  +   +I     + N   +A NI  + +L +  
Sbjct: 121 SRLFAVEGFSLEAPSTKKMLSFLAAVG-ARKPLIVLDSRNENVIRSAANIQGVKVLHMDS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++R   LV + + ++ LE+ +
Sbjct: 180 INVLDLVRHDGLVATTAVLKRLEEVY 205


>gi|326773964|ref|ZP_08233246.1| ribosomal protein L4/L1 family protein [Actinomyces viscosus C505]
 gi|326636103|gb|EGE37007.1| ribosomal protein L4/L1 family protein [Actinomyces viscosus C505]
          Length = 214

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 2/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +  G+  G + +  ++F       ++ +V+  Q    R G   +K R +V   G 
Sbjct: 6   TVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDVRGGGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 66  KPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRSALSDRARNGR 125

Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + VI   V+     TK  +   R L      ++   + D   +L+ RN P  ++L    +
Sbjct: 126 VHVITEFVTTTVPSTKNALVALRNLTD-RKALVIVDRQDDLSRLSLRNAPEAHVLWADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L+   +V + S ++A 
Sbjct: 185 NTYDVLKSDDVVFTASGLDAF 205


>gi|291537925|emb|CBL11036.1| LSU ribosomal protein L4P [Roseburia intestinalis XB6B4]
          Length = 198

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 1/198 (0%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
           ++G++ G + +++ +F ++  + ++   +  Q    R G  K+K RSEV   G K + QK
Sbjct: 1   MEGKEVGSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGGGRKPWRQK 60

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
           GTG AR  S    Q+  GG  F PVP      L KK +  AL+ AL+ +   +  +V+D 
Sbjct: 61  GTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNESKFIVVDE 120

Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
           L     KTK  V     L      ++    +D N   +A N+P +       +NV+D+L+
Sbjct: 121 LKLDSIKTKNFVQVLNNLK-VEKALVVLNDMDTNVIKSASNVPTVKTAQTNELNVFDVLK 179

Query: 189 CSKLVLSKSAIEALEDRF 206
              +V++K A++ +E+ +
Sbjct: 180 YDTVVVTKDAVKTIEEVY 197


>gi|242032629|ref|XP_002463709.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor]
 gi|241917563|gb|EER90707.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor]
          Length = 294

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/201 (38%), Positives = 119/201 (59%), Gaps = 1/201 (0%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           V N   EDKG + +  D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K Y
Sbjct: 87  VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 146

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     ++V
Sbjct: 147 KQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 206

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
            ++L     KTK +V   R +D +  + ++DG  +D+  +LA +N+  +N+LP  G+NVY
Sbjct: 207 FEDLEVPSHKTKNIVQYIRQMDDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 266

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            IL+   LV++++AI  + +R
Sbjct: 267 SILQHDTLVMTRAAINRIVER 287


>gi|114327219|ref|YP_744376.1| 50S ribosomal protein L4 [Granulibacter bethesdensis CGDNIH1]
 gi|122327801|sp|Q0BUP9|RL4_GRABC RecName: Full=50S ribosomal protein L4
 gi|114315393|gb|ABI61453.1| LSU ribosomal protein L1E (= L4P) [Granulibacter bethesdensis
           CGDNIH1]
          Length = 215

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/205 (40%), Positives = 116/205 (56%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ ++ LD    G   + ++IFA  P+  I+ARV+ WQ   +R G  K KG  EV+ T 
Sbjct: 1   MQIEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    QFR GG   GPV     + LPKKVR L L  ALS K    
Sbjct: 61  KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKQAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID     E KT+ L  + RAL   +ALI+DG  +D  F  A+R++  +++LP  G 
Sbjct: 121 KLVVIDTAAGME-KTRDLAAKLRALGWRSALIVDGASVDEGFARASRSLLAVDVLPTIGA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL    L ++ + +EAL+ R 
Sbjct: 180 NVYDILNHDVLAITVAGVEALKARL 204


>gi|240850834|ref|YP_002972234.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup]
 gi|240267957|gb|ACS51545.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup]
          Length = 206

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/206 (56%), Positives = 153/206 (74%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG + G + VSE IF L P++ IL RV+RWQ  R++ G  +S+GRS+V+ TG
Sbjct: 1   MDLVIKTLDGNEAGKLKVSEAIFDLVPREDILQRVVRWQLARRQQGSHQSQGRSDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV     H LPKK+R+L LR ALS K  + 
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKAK 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D++++D L  K+ KTK LV+ F  L  +NAL+I G ++D NF  A  NIPNI++LP+QGI
Sbjct: 121 DLIIVDELTVKDAKTKMLVSHFSKLGFNNALLIGGKEIDINFFRAVSNIPNIDILPIQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR SKLVLSK+A+EALE+RFK
Sbjct: 181 NVYDILRRSKLVLSKAAVEALEERFK 206


>gi|332176632|gb|AEE12322.1| ribosomal protein L4/L1e [Porphyromonas asaccharolytica DSM 20707]
          Length = 207

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELS+ N+ GED G  I++   +F ++P    +   ++     +R G  K+K RSE++ +
Sbjct: 1   MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKTKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTG AR    + +  RGG + FGP P      L KK+R LA R AL+ K   
Sbjct: 61  TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N IMV+D L  +  KTK  V+  +A        +    Q++    L+ARNIP ++++  Q
Sbjct: 121 NQIMVLDQLSFEAPKTKSFVSMAKALNVDGQKTLYVVSQIEDTVALSARNIPGVSIVRAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L C K+V ++ A+  + + F
Sbjct: 181 DLNTYCVLDCRKIVFTEDALAQVNEMF 207


>gi|294784803|ref|ZP_06750091.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27]
 gi|294486517|gb|EFG33879.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27]
          Length = 209

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 109/208 (52%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L+V NL G+  G + V++ +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPV 178
            +++V+D    +  KTK +V     +D     +     L  D N  L+ARN+ N  +L  
Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I VY +L+  K++ +K A+  +E+  
Sbjct: 181 NEIGVYWLLKQEKVIFTKEALAVVEEVL 208


>gi|329945685|ref|ZP_08293415.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328528493|gb|EGF55467.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 214

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 2/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +  G+  G + +  ++F       ++ +V+  Q    R G   +K R +V   G 
Sbjct: 6   TVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDVRGGGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 66  KPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYTQRTPKKMKAAALRSALSDRARNGR 125

Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + VI   V+     TK  +   R L      ++   + D   +L+ RN P  ++L    +
Sbjct: 126 VHVITEFVTTTVPSTKNALVALRNLTD-RKALVIVDRQDDLSRLSLRNAPEAHVLWADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L+   +V + S ++A 
Sbjct: 185 NTYDVLKSDDVVFTASGLDAF 205


>gi|319407425|emb|CBI81076.1| 50S ribosomal protein L4 [Bartonella sp. 1-1C]
          Length = 206

 Score =  189 bits (480), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/206 (55%), Positives = 153/206 (74%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L ++ LDG++ G + VSE+IF L P++ IL RV+RWQ  R++ G  +S+GRS+V+ TG
Sbjct: 1   MDLIIKTLDGKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARHSS    QFRGGGKA GPV     H LPKK+R+L LR ALS K  ++
Sbjct: 61  AKMFKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHNLPKKIRALGLRLALSVKLKTD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++++D L  ++ KTK L   F  L  +NAL+I G ++D NF  AA NIPNI++LPVQGI
Sbjct: 121 NLIIVDELSIRDAKTKVLNMNFSKLGFNNALLIGGKEVDMNFFRAASNIPNIDVLPVQGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR SKLVLSK A+E LE+RFK
Sbjct: 181 NVYDILRRSKLVLSKEAVETLEERFK 206


>gi|225027479|ref|ZP_03716671.1| hypothetical protein EUBHAL_01735 [Eubacterium hallii DSM 3353]
 gi|224955214|gb|EEG36423.1| hypothetical protein EUBHAL_01735 [Eubacterium hallii DSM 3353]
          Length = 198

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 1/198 (0%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
           ++G   G I +S+ IFA+   + ++ + +  Q   KR G  K+K RSEV   G K + QK
Sbjct: 1   MEGAQVGTIELSDSIFAVPVNEHLVHQAVVAQLANKRQGTQKAKTRSEVRGGGRKPWRQK 60

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
           GTG AR  S    Q+ GGG  F P P      + KK + LA++  L+ K   +  +V+D 
Sbjct: 61  GTGHARQGSIRAPQWTGGGVVFAPTPRDYSVKMNKKEKQLAMKSVLTSKVNESKFIVLDE 120

Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
           L   E KTK +      L      +I   + D     +A N+P +    +  INVYDIL+
Sbjct: 121 LKLAEIKTKQIKAVLDNLK-VEKALIVTKEKDDVVVKSANNLPKVATTALNNINVYDILK 179

Query: 189 CSKLVLSKSAIEALEDRF 206
              +V++  A+ A+E+ +
Sbjct: 180 YDTVVVTSEAVAAIEEVY 197


>gi|256847764|ref|ZP_05553209.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN]
 gi|256715453|gb|EEU30429.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN]
          Length = 207

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ N DG   G I +++ IF ++  +      +  Q    R G    K RS V   
Sbjct: 1   MTSVALFNQDGSQNGNIDLNDAIFGVEVNENAEYESIIRQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + LP+KVR LA++ ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYNYRLPRKVRQLAIKSALSQKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  +V+D++     KTK   +    L ++  ++I     D+N  L+ARN+  +N++   G
Sbjct: 121 DKFVVVDSINFDAPKTKEFASVLDNLKVNEKVLIVVTDDDKNAGLSARNLSKVNVVTPAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+ +++   K+V++KSA+  +E+  
Sbjct: 181 VNILNVVDAQKIVITKSALSQVEEVL 206


>gi|38233086|ref|NP_938853.1| 50S ribosomal protein L4 [Corynebacterium diphtheriae NCTC 13129]
 gi|46577152|sp|P61062|RL4_CORDI RecName: Full=50S ribosomal protein L4
 gi|38199345|emb|CAE48978.1| 50S ribosomal protein L4 [Corynebacterium diphtheriae]
          Length = 217

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   +G+  G + +  +IF  +    +L +V+  Q   KR G   +K R+EV+  G 
Sbjct: 5   KLDVLTAEGKTDGQVELPAEIFDREASVALLHQVVNAQLAAKRQGTHSAKTRAEVSGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG + GP P       PKK+   AL  AL+D+     
Sbjct: 65  KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALFGALTDRARHER 124

Query: 123 IMVI-DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI + +  +   TK   +    +     +++   + D   Q +ARN+P +++L    +
Sbjct: 125 IHVISELVAGQTPSTKSARSFIERITDRRNVLLVVGREDVTAQKSARNLPGVHILFADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+    +R
Sbjct: 185 NTYDVLYSDDVVFSVEALNTFINR 208


>gi|313887073|ref|ZP_07820772.1| 50S ribosomal protein L4 [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923484|gb|EFR34294.1| 50S ribosomal protein L4 [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 207

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELS+ N+ GED G  I++   +F ++P    +   ++     +R G  K+K RSE++ +
Sbjct: 1   MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKAKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTG AR    + +  RGG + FGP P      L KK+R LA R AL+ K   
Sbjct: 61  TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N IMV+D L  +  KTK  V+  +A        +    Q++    L+ARNIP +N++  Q
Sbjct: 121 NQIMVLDQLSFETPKTKSFVSMAKALNVDGQKTLYVVSQIEDTVALSARNIPGVNIVRAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L C K+V ++ A+  + + F
Sbjct: 181 DLNTYCVLDCRKIVFTEDALAQVNEMF 207


>gi|259502532|ref|ZP_05745434.1| 50S ribosomal protein L4 [Lactobacillus antri DSM 16041]
 gi|259169484|gb|EEW53979.1| 50S ribosomal protein L4 [Lactobacillus antri DSM 16041]
          Length = 207

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 109/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I ++  +F ++P Q      +  Q    R G    K RS V+  
Sbjct: 1   MTSVNLYKQDGSQNGTIELNAAVFGIEPNQNAEFDAILRQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + LP+KVR LA++ ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPSPRSYKYNLPRKVRQLAIKSALSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L     KTK        L+++   ++   + D+N  L+ARN+ N  ++   G
Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMNNLNVAEKALVVVTEDDKNAALSARNLANATVVTPAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+ ++    K++++KSA+  +E+  
Sbjct: 181 VNILNVADAQKVIITKSALSQVEEVL 206


>gi|217077284|ref|YP_002335002.1| 50S ribosomal protein L4 [Thermosipho africanus TCF52B]
 gi|226731434|sp|B7IHU7|RL4_THEAB RecName: Full=50S ribosomal protein L4
 gi|217037139|gb|ACJ75661.1| ribosomal protein L4/L1 family [Thermosipho africanus TCF52B]
          Length = 221

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 118/220 (53%), Gaps = 14/220 (6%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++S+ N  GE+ G I + +++FA++P   ++ R +  Q    R G + +K R EV+  
Sbjct: 1   MAKVSLFNSKGENIGPIDLKDEVFAIEPNFDVIWRYVDMQLTNARAGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K ++QK TGRAR  S     +R GG A GP P +    L KK++ LAL+ ALS +   
Sbjct: 61  GRKPWIQKHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRN--FQLAARNIPNINLL 176
            +++V+D +  K  KTK L    +   L+    L++   +++     +++ RNIP + ++
Sbjct: 121 GNLIVVDEIKFKRPKTKDLREVLKNLGLENQKVLVVLPKKVEEYVNVKISGRNIPGVKVI 180

Query: 177 ----------PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
                      + G+NVYDIL   KLVL +  ++ +E+  
Sbjct: 181 IADNPGVDRTNIDGLNVYDILNHDKLVLLQGTVQKIEEVL 220


>gi|161485627|ref|YP_064861.2| 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54]
          Length = 207

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N + E    I +++ IF  + ++ IL  V+R Q   KR G + +K R EV   
Sbjct: 1   MSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S++   +RGGG  FGP P      L +KVR  A+  ALS +F  
Sbjct: 61  GAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+DN +    KTK   +  + L+L+NA +I       N   + RN+    +LP +G
Sbjct: 121 GNLIVLDNFIMDAIKTKEFASTMKTLELANA-LIVMDDASENLSKSCRNVHGYRILPAEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   K+VL K  IE+LE R 
Sbjct: 180 LNVYDILLHKKVVLVKPVIESLEKRL 205


>gi|254303419|ref|ZP_04970777.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148323611|gb|EDK88861.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 209

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/208 (35%), Positives = 111/208 (53%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L+V NL G+  G + V++ +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPV 178
            +++V+D  V +  KTK +V     +D     +     L  D N  L+ARN+ N  +L  
Sbjct: 121 GNVLVLDYDVIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I VY +L+  K++L+K A+  +E+  
Sbjct: 181 NEIGVYWLLKQEKVILTKEALATVEEVL 208


>gi|269219005|ref|ZP_06162859.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269212116|gb|EEZ78456.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 215

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
              V ++ G+  G   +  ++F ++    ++ +V+  Q    R G   +K R EV+  G 
Sbjct: 6   NADVYDVTGKVTGSFELPAELFDVEVNIPLIHQVVNAQLAAARQGTHSTKTRGEVSGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    QF GGG   GP P       PKK+ + AL  +LSD+  +  
Sbjct: 66  KPFKQKGTGRARQGSIRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALCQSLSDRARNGR 125

Query: 123 IMVIDNL-VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V++     ++  TK  +   R +    A ++   + D   +L+ RN P  +++ V  +
Sbjct: 126 IHVVEAFLEGEKPSTKAALGLLRKVIDDRAALVAVSRGDDLTRLSLRNAPEASVIFVDQL 185

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+L    +V ++SA+  
Sbjct: 186 NSYDVLVADDVVFTESALTE 205


>gi|227530206|ref|ZP_03960255.1| ribosomal protein L4 [Lactobacillus vaginalis ATCC 49540]
 gi|227349881|gb|EEJ40172.1| ribosomal protein L4 [Lactobacillus vaginalis ATCC 49540]
          Length = 207

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I ++ DIF ++P +      +  Q    R G    K RS V+  
Sbjct: 1   MTSVNLYKQDGSQNGTIDLNADIFGIEPNENAEFEAILRQRASMRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    ++LP+KVR LA++ ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYKYSLPRKVRQLAIKSALSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L     KTK        L ++  +++     D+N  L+ARN+ N  ++   G
Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMDNLKVAEKVLVVVTDDDKNAALSARNLANATVVTPAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+  ++   K+V++KSA+  +E+  
Sbjct: 181 VNILSVVDSQKIVITKSALSQVEEVL 206


>gi|226491762|ref|NP_001147335.1| LOC100280943 [Zea mays]
 gi|195610184|gb|ACG26922.1| 50S ribosomal protein L4 [Zea mays]
          Length = 293

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 1/201 (0%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           V N   EDKG + +  D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K Y
Sbjct: 86  VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 145

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTG+ARH +   +QFRGG    GP P      L KKVR L L+ ALS +     +++
Sbjct: 146 PQKGTGKARHGTLRGAQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLI 205

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
            ++L     KTK +V   R +D S  + ++DG  +D+  +LA +N+  +N+LP  G+NVY
Sbjct: 206 FEDLEVPSHKTKNIVQYIRQMDDSKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 265

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            IL+   LV++++AI  + +R
Sbjct: 266 SILQHDTLVMTRAAINRIVER 286


>gi|312889366|ref|ZP_07748920.1| LSU ribosomal protein L4P [Mucilaginibacter paludis DSM 18603]
 gi|311298243|gb|EFQ75358.1| LSU ribosomal protein L4P [Mucilaginibacter paludis DSM 18603]
          Length = 208

 Score =  189 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N+ G++ G  + + E +F ++P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MEVKVLNVSGKETGASVHLPESVFGIEPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTG AR  S     F GGG+ FGP P      L KK++ LA + ALS K   
Sbjct: 61  TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKQLARKSALSYKALD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  +             ++     + N  L++RN+    ++   
Sbjct: 121 NSIVVLEDFTFDAVKTKTYIQFVADLNLSDEKTLLVLPSANNNIYLSSRNLKKSKVITAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ YD+L   KL+L+  +++ LE+  
Sbjct: 181 QLSTYDVLNAGKLLLTTDSVKTLEEAL 207


>gi|158317790|ref|YP_001510298.1| 50S ribosomal protein L4 [Frankia sp. EAN1pec]
 gi|158113195|gb|ABW15392.1| ribosomal protein L4/L1e [Frankia sp. EAN1pec]
          Length = 247

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V    G D G + +   +F +     ++ +V+  Q    R G   +K R EV   G 
Sbjct: 22  TVPVHAPAGGDAGSVELPGAVFDVPVNVPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGR 81

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +N 
Sbjct: 82  KPYRQKGTGRARQGSLRAPQFTGGGIVHGPTPRNYDQRTPKKMKAAALRGALSDRARNNR 141

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+ +LV+     TK  V    +L  +  +++   + D    L+ RN+  ++LL    +
Sbjct: 142 LHVVSSLVAGDTPSTKSAVAALTSLVDARRVLVVALRSDELTWLSLRNVAEVHLLDPGQL 201

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+L    +V ++ A+ A
Sbjct: 202 NTYDVLVSDDVVFTEGALAA 221


>gi|148273800|ref|YP_001223361.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831730|emb|CAN02699.1| 50S ribosomal protein L4 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 218

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 100/203 (49%), Gaps = 1/203 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V +  G   G + +   +F ++    ++ +V+  Q    R G  K+KGR EV+  G 
Sbjct: 6   QLDVLDATGAVTGSVDLPASLFDVQTNVPLIHQVVVAQLAAARQGTHKTKGRGEVSGAGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    Q  GGG   GP P       PKK+ + AL  ALSD+     
Sbjct: 66  KPFKQKGTGRARQGSIRAPQMTGGGIVHGPTPRNYSQRTPKKMIAAALLGALSDRARGAR 125

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + VI++L +     T+ +V     +  S  ++I   + D     + RNIP +++L    +
Sbjct: 126 LHVIESLSAGDVPSTRTVVALLEGIATSKHVLIVLERTDEVSLRSVRNIPTVHVLSYDQL 185

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N YD+L    +V +K A +A  +
Sbjct: 186 NAYDVLVSDDIVFTKGAFDAFVE 208


>gi|194246734|ref|YP_002004373.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali]
 gi|254803748|sp|B3QZZ2|RL4_PHYMT RecName: Full=50S ribosomal protein L4
 gi|193807091|emb|CAP18529.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali]
          Length = 207

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 109/207 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + ++ N  G+    I + ++IF +   + +L  V+  Q    R G   +K R+ V+  
Sbjct: 1   MPKYNLINQKGDFLSQIDLDDEIFGISINKQVLYDVVNAQRASMRQGTHATKNRALVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH +     +RGGG AFGP P      + +KVR LAL+ ALS K  +
Sbjct: 61  GKKPWRQKGTGRARHGTIRSPLWRGGGVAFGPSPRDYSVKVNQKVRRLALKMALSWKINN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++++IDN+  +  KTK        L++    +I    L+ N  L+ RN+  + L  V  
Sbjct: 121 KNLILIDNINLETHKTKEFQNILDQLNIQQKTLILTKDLNHNLCLSIRNLSKVLLETVSH 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++VY +L  S ++L+K A    E+  K
Sbjct: 181 VSVYQLLSYSTIILTKEAANYFEENLK 207


>gi|85374464|ref|YP_458526.1| 50S ribosomal protein L4 [Erythrobacter litoralis HTCC2594]
 gi|122544174|sp|Q2N9B2|RL4_ERYLH RecName: Full=50S ribosomal protein L4
 gi|84787547|gb|ABC63729.1| ribosomal protein L4 [Erythrobacter litoralis HTCC2594]
          Length = 207

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V+ +DG+  G + + + +F ++P+  IL RV+ WQ   +R     ++ RS+VA TG
Sbjct: 1   MKVKVQKIDGKAAGDVELDDAVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   QKG+G ARH  +    F GGGKA G        +L KK+R+L L+ ALS K    
Sbjct: 61  AKFGRQKGSGNARHGDRGAPIFIGGGKAHGARKRDFNPSLNKKIRALGLKMALSSKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQG 180
            ++V+D+L  K+ KTK L   F     +  +++ DG  ++  F  AA N+P +N+LP  G
Sbjct: 121 -LVVVDSLDLKDAKTKVLKGHFDKAGWNGKVLVIDGESVNEGFSKAAGNLPGVNVLPAMG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL+   LVL+K A+E LE RF
Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEARF 205


>gi|312144246|ref|YP_003995692.1| ribosomal protein L4/L1e [Halanaerobium sp. 'sapolanicus']
 gi|311904897|gb|ADQ15338.1| ribosomal protein L4/L1e [Halanaerobium sp. 'sapolanicus']
          Length = 209

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++  +  G +  ++ +++ +F  K  + ++ +V+  Q   +R G + +K R+ V   
Sbjct: 1   MPQVTKFDQSGNELDMVDLNDSVFNNKINEHVVHQVVNAQLAARRSGTASTKNRANVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     + GGG  FGP P      L KK++ LAL+  L+DK   
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPLWVGGGVTFGPSPRSYDKKLTKKMKRLALKSVLTDKVNR 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++++++D +   E KTK ++            ++I   + D N  L+ARNIPN+  L   
Sbjct: 121 DEVVLVDKIALSEPKTKAVIKILADLNLEDKKVLIVMPEKDDNLYLSARNIPNVKTLLAG 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN YD+L    ++  + A++ +E+  
Sbjct: 181 SINAYDLLDNEMIIFIEEAVKMIEEVL 207


>gi|317050529|ref|YP_004111645.1| 50S ribosomal protein L4/L1e [Desulfurispirillum indicum S5]
 gi|316945613|gb|ADU65089.1| ribosomal protein L4/L1e [Desulfurispirillum indicum S5]
          Length = 207

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 103/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N++ E  G +++S+++F    +  ++  V+  Q   +R G    K RS V+  
Sbjct: 1   MPVVSVINVNNEKVGEVALSDELFGGAVKPHLMHEVVVAQLAARRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           GSK + QKGTGRAR  +     +R GG  FGP P      + KKVR  AL  ALS+K   
Sbjct: 61  GSKPWRQKGTGRARAGTSRSPLWRTGGVIFGPTPRSYEKKVNKKVRRQALVSALSEKAAQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+V D+   +  KTK     F    L   ++    ++D    LA RN+P + L+  +G
Sbjct: 121 QSIVVFDDFALESPKTKLANQVFAKCSLDRKVLFVVDEMDSPKALAMRNLPFVKLIKPEG 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +NVYD++    L   KS  E L
Sbjct: 181 LNVYDVVNAKVLAFEKSTAERL 202


>gi|312870511|ref|ZP_07730630.1| 50S ribosomal protein L4 [Lactobacillus oris PB013-T2-3]
 gi|311093973|gb|EFQ52298.1| 50S ribosomal protein L4 [Lactobacillus oris PB013-T2-3]
          Length = 207

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 108/206 (52%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I ++  +F ++P Q      +  Q    R G    K RS V+  
Sbjct: 1   MTSVNLYKQDGSQNGTIELNAAVFGIEPNQNAEFDAILRQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    + LP+KVR LA++ ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPSPRSYKYNLPRKVRQLAIKSALSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L     KTK        L+++   +I     D+N  L+ARN+ N  ++   G
Sbjct: 121 NALVVVDALNFDAPKTKEFAGVMNNLNVAEKALIVVTDDDKNAALSARNLANATVVTPAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+ ++    K++++KSA+  +E+  
Sbjct: 181 VNILNVADAQKVIITKSALSQVEEVL 206


>gi|19551747|ref|NP_599749.1| 50S ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032]
 gi|62389402|ref|YP_224804.1| 50S ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032]
 gi|145294658|ref|YP_001137479.1| 50S ribosomal protein L4 [Corynebacterium glutamicum R]
 gi|46577275|sp|Q8NT08|RL4_CORGL RecName: Full=50S ribosomal protein L4
 gi|166234660|sp|A4QBI0|RL4_CORGB RecName: Full=50S ribosomal protein L4
 gi|21323272|dbj|BAB97900.1| Ribosomal protein L4 [Corynebacterium glutamicum ATCC 13032]
 gi|41324736|emb|CAF19218.1| 50S RIBOSOMAL PROTEIN L4 [Corynebacterium glutamicum ATCC 13032]
 gi|140844578|dbj|BAF53577.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 218

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V+  DG   G + +  +IF  +    +L +V+  Q    R G   +K R EV   G 
Sbjct: 5   KLDVQTADGNINGSVELPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRGEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG + GP P       PKK+   AL  ALSD+  +  
Sbjct: 65  KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYSQRTPKKMIKAALYGALSDRARNAR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+  LV  +   TK        L    ++++   + D N Q +A N+P +++L    +
Sbjct: 125 IHVVSELVPGQTPSTKSAKAFIERLTERKSVLLVVSREDINAQKSANNLPGVHILAADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L+   +V S  A+    +R
Sbjct: 185 NTYDVLKSDDVVFSVEALHTFINR 208


>gi|254421500|ref|ZP_05035218.1| ribosomal protein L4/L1 family [Synechococcus sp. PCC 7335]
 gi|196188989|gb|EDX83953.1| ribosomal protein L4/L1 family [Synechococcus sp. PCC 7335]
          Length = 210

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++  V+N  GE+ G +S+   + + +    I+ R L  Q    R G + +K R+EV   
Sbjct: 1   MVDCVVKNWQGEEAGSVSLELKVASEENASHIVHRALVRQINNGRQGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYTTKMNRKERRLALRTAFQSRANE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++        + KTK  +      ++     +++   + + N  L+ RN+PN+ ++  
Sbjct: 121 MTVVKDFAAELTQPKTKEALAALTRWEIDASAKVLMVFSERNDNVYLSLRNVPNVRMIDA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +N+YDIL    LV+++SA+E +++ +
Sbjct: 181 TNLNIYDILHADSLVVTESALEKIQEVY 208


>gi|297564038|ref|YP_003683011.1| ribosomal protein L4/L1e [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848487|gb|ADH70505.1| ribosomal protein L4/L1e [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 223

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 3/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V+N +G  KG + + + +FA +    ++ +V+  Q    R G   +K R +V   
Sbjct: 1   MAQIEVKNPEGGTKGSVELPDTVFAQQVSIPLIHQVVNAQLAAGRQGTHATKTRGDVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    Q+ GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GKKPYRQKGTGRARQGSIRAPQYTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECK---TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             I V+   V+++ +   T+  +   R +  S+ +++   + D + + A RN+  +++L 
Sbjct: 121 GRIHVVSQFVAEDLESKFTQTALKALRQVTESDKVLVVLARDDEHNRRALRNVEEVHILD 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202
              +N YD+L    +V +++     
Sbjct: 181 ADQVNTYDVLYSDDVVFTEAGYAEF 205


>gi|227832220|ref|YP_002833927.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975]
 gi|262183925|ref|ZP_06043346.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975]
 gi|254803728|sp|C3PKQ3|RL4_CORA7 RecName: Full=50S ribosomal protein L4
 gi|227453236|gb|ACP31989.1| 50S ribosomal protein L4 [Corynebacterium aurimucosum ATCC 700975]
          Length = 220

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V+  DG+  G + +  ++F  +    ++ +V+  Q    R G  K+K R EV   G 
Sbjct: 5   KLDVQTADGKTNGTVELPAELFDTEASIALMHQVVNAQLAAARQGTHKTKTRGEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GPVP       PK++   AL  ALSD+  +  
Sbjct: 65  KPFRQKGTGRARQGSIRAPHYTGGGTVHGPVPRDYSQRTPKRMIKAALYGALSDRARNER 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI+ LV  +   TK        L     +++   + D N + +A N+PN+ +L    +
Sbjct: 125 IHVIEELVPGQTPSTKQAKAFIERLTDRKNVLLVIGREDINARRSANNLPNVQILDAGQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+    +R
Sbjct: 185 NTYDVLYSDDVVFSVEALHTFVER 208


>gi|149184312|ref|ZP_01862630.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21]
 gi|148831632|gb|EDL50065.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21]
          Length = 207

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 123/206 (59%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V+ +DG+  G I +++D+F ++P+  IL RV+ WQ   +R     ++ RS+VA TG
Sbjct: 1   MKVKVQKIDGKASGDIELNDDVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG G ARH  +    F GGGKA G        +L KK+R+L L+ ALS K    
Sbjct: 61  KKFGRQKGGGTARHGDRGAPIFIGGGKAHGARKRDFEQSLNKKIRALGLKMALSSKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQG 180
            ++V+D+L  K+ KTK L   F     S  ++I DG  ++  F+ AA N+P +N+LP  G
Sbjct: 121 -LVVVDSLELKDAKTKALKGHFDKNGWSGKVLIIDGESVNDGFKKAAGNLPGVNVLPAMG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL+   LVL+K A+E LE RF
Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEGRF 205


>gi|331005013|ref|ZP_08328420.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC1989]
 gi|330421179|gb|EGG95438.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC1989]
          Length = 205

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 105/206 (50%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ELS+    G   G + VSE  F  +  Q ++ + +       R G    K R+ V+  
Sbjct: 1   MMELSISTPKGAK-GTVEVSELTFGKEFNQDLVHQAVVSYQAAARQGSKAQKNRAAVSGG 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKG+GRAR  +     +R GG  F   P      + +K+   A+R  LS+    
Sbjct: 60  GAKPWKQKGSGRARAGTSRGPIWRSGGVTFAAQPRNYEQKINRKMYRAAMRCILSELARQ 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++V++ +     KTK L++     D++ A +I   +++ N  LA+RN+  ++++  QG
Sbjct: 120 DRLIVVEPIQLDAPKTKGLISYLAQFDVAEA-LIVTEEVNANLYLASRNLHKVDVIDAQG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N   ++   +++++  A++ +E+  
Sbjct: 179 VNPLSLVGFDRVMITVDALKKVEEAL 204


>gi|118616572|ref|YP_904904.1| 50S ribosomal protein L4 [Mycobacterium ulcerans Agy99]
 gi|166234692|sp|A0PM64|RL4_MYCUA RecName: Full=50S ribosomal protein L4
 gi|118568682|gb|ABL03433.1| 50S ribosomal protein L4, RplD [Mycobacterium ulcerans Agy99]
          Length = 224

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 1/200 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           E+ V+  DG+  G + +  ++F +     ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 13  EIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVSGGGR 72

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  
Sbjct: 73  KPYRQKGTGRARQGSTRTPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGR 132

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  +   TK   T    +     +++   + D+    + RN+P +++L    +
Sbjct: 133 IHAVTELVAGQTPSTKSAKTFLATITDRKQVLVVIGRDDQTGVKSVRNLPGVHILSPDQL 192

Query: 182 NVYDILRCSKLVLSKSAIEA 201
           N YD+LR   +V S  A+ A
Sbjct: 193 NTYDVLRADDVVFSVEALNA 212


>gi|115486043|ref|NP_001068165.1| Os11g0585700 [Oryza sativa Japonica Group]
 gi|77551649|gb|ABA94446.1| ribosomal protein L4/L1 family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113645387|dbj|BAF28528.1| Os11g0585700 [Oryza sativa Japonica Group]
          Length = 286

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/201 (38%), Positives = 118/201 (58%), Gaps = 1/201 (0%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           V N   EDKG + +  D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K Y
Sbjct: 79  VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 138

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     ++V
Sbjct: 139 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 198

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
            D+L     KTK +V     ++ +  + ++DG  +D+  +LA +N+  +N+LP  G+NVY
Sbjct: 199 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 258

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            IL+   LV++++AI  + +R
Sbjct: 259 SILQHDTLVMTRNAINRIVER 279


>gi|81642546|sp|Q6AP70|RL4_DESPS RecName: Full=50S ribosomal protein L4
 gi|50876014|emb|CAG35854.1| probable 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54]
          Length = 211

 Score =  188 bits (478), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +SV N + E    I +++ IF  + ++ IL  V+R Q   KR G + +K R EV   
Sbjct: 5   MSTVSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGG 64

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S++   +RGGG  FGP P      L +KVR  A+  ALS +F  
Sbjct: 65  GAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQE 124

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+DN +    KTK   +  + L+L+NA +I       N   + RN+    +LP +G
Sbjct: 125 GNLIVLDNFIMDAIKTKEFASTMKTLELANA-LIVMDDASENLSKSCRNVHGYRILPAEG 183

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL   K+VL K  IE+LE R 
Sbjct: 184 LNVYDILLHKKVVLVKPVIESLEKRL 209


>gi|297836242|ref|XP_002886003.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata]
 gi|297331843|gb|EFH62262.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata]
          Length = 297

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 116/203 (57%), Gaps = 1/203 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   E+KG + ++ D+F +  ++ I+  V+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 88  IPVTNFQSEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 147

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRARH +    QFRGG    GP P      + K+VR L L+ AL+ +     +
Sbjct: 148 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 207

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIID-GCQLDRNFQLAARNIPNINLLPVQGIN 182
           +V D+L     KTK +V  +  ++ +  +++  G  +D   +LA +N+  +N++P  G+N
Sbjct: 208 LVFDDLALPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 267

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VY IL    LV+S+ A+  + +R
Sbjct: 268 VYSILLHDTLVMSRDAVNKIVER 290


>gi|152964658|ref|YP_001360442.1| ribosomal protein L4/L1e [Kineococcus radiotolerans SRS30216]
 gi|151359175|gb|ABS02178.1| ribosomal protein L4/L1e [Kineococcus radiotolerans SRS30216]
          Length = 234

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + +R  DG   G + +    F  +    ++ +V+  Q    R G   +K R EV   G 
Sbjct: 12  TVPLRTADGGSNGTVELPAKDFGRQANISLIHQVVTAQLAAARQGTHSTKRRGEVRGGGK 71

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+     
Sbjct: 72  KPYKQKGTGRARQGSLRAPQFTGGGIVHGPKPRDYSQRTPKKMKAAALRGALSDRVRHER 131

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V++ L + +   TK        L     +++   + D   Q + RN+ N+++LP   +
Sbjct: 132 LHVVEGLAAGETPSTKTARALIATLSGRKNVLVVLTRDDDVSQKSLRNLDNVHVLPADQL 191

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+++   +V +++A++A 
Sbjct: 192 NTYDVVKSDDVVFTRAALDAF 212


>gi|269958585|ref|YP_003328372.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel]
 gi|269848414|gb|ACZ49058.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel]
          Length = 208

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 112/205 (54%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++V N+  E  G + ++  +F ++P++ +L  V+ WQ  ++R G  K++  S+V  T 
Sbjct: 1   MEVNVVNIKNEVVGQLELNASVFGVQPRRDVLRDVVDWQLAKRRAGTHKTRCISDVRGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGG   FGPV     ++L KKVR L L+ ALS K   +
Sbjct: 61  AKPYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+      KT      F       + ++     +     A RN+PN++LL   GI
Sbjct: 121 KLVVLDDSGLVLEKTADARAAFGNFGAYGSYLVVAEGYEDKVACACRNLPNVDLLKYAGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV DILR   ++L+  A++ LE R 
Sbjct: 181 NVLDILRHDCVILTVGAVKCLESRL 205


>gi|159901427|ref|YP_001547674.1| 50S ribosomal protein L4/L1e [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894466|gb|ABX07546.1| ribosomal protein L4/L1e [Herpetosiphon aurantiacus ATCC 23779]
          Length = 209

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 1/203 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  + N  G+  G + + + IF ++P   ++ + +  Q    R+G   +K R EV  + 
Sbjct: 1   MEAKLYNQAGQAIGTLELQDYIFGIEPNIPVMHQAVIRQLANARLGTHSTKTRGEVRGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRAR  +       GGG   GP P     A+P+K+R LA+R ALS K+  N
Sbjct: 61  RKLYRQKGTGRARQGAIRAPHHSGGGVVHGPKPRKYTKAMPRKMRRLAVRSALSAKYAEN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            I+ +D+L     KTK  +   + L  + +  ++   +   N  L+A N+PN+  L    
Sbjct: 121 QIIFLDDLSLNAPKTKDFLALLKNLPLVGDKTLVALGEKSDNITLSASNLPNVKTLLAAY 180

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           +NV D+L    L+L KSA+  +E
Sbjct: 181 LNVRDLLTYDTLILPKSALSVVE 203


>gi|296130494|ref|YP_003637744.1| ribosomal protein L4/L1e [Cellulomonas flavigena DSM 20109]
 gi|296022309|gb|ADG75545.1| ribosomal protein L4/L1e [Cellulomonas flavigena DSM 20109]
          Length = 228

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +  G+  G   +  D+F +     ++ +V+  Q    R G   +K R EV   G 
Sbjct: 6   TVDVLDEKGKKAGTADLPGDVFDVTTNVPLIHQVVVAQLAAVRQGTHDTKTRGEVRGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 66  KPYKQKGTGRARQGSTRAPQFAGGGTVHGPTPRDYSQRTPKKMKAAALRGALSDRARAGR 125

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+      +   TK  +     L     +++   + D     + RN+  ++LL    +
Sbjct: 126 VHVVTGFAPGEVPSTKAALAVLDNLSGRKNVLVVVERQDEITWKSLRNVERVHLLVADQL 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V ++ A++A 
Sbjct: 186 NTYDVLISDDVVFTQGALDAF 206


>gi|227497182|ref|ZP_03927430.1| ribosomal protein L4 [Actinomyces urogenitalis DSM 15434]
 gi|226833313|gb|EEH65696.1| ribosomal protein L4 [Actinomyces urogenitalis DSM 15434]
          Length = 214

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 2/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + + +  G+  G   +  +IF ++    ++ +V+  Q    R G   +K R  V   G 
Sbjct: 6   TVDIVDSKGKKTGSAELPAEIFDVETNIPLMHQVVVAQLAAARQGTHATKTRGAVRGGGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 66  KPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRSALSDRARNGR 125

Query: 123 IMV-IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V  + + S++  TK  +   R +      ++   + D    L+ RN P   ++    +
Sbjct: 126 IHVITEFVTSEKPSTKSALGALRNITD-RKALVVATRADELTALSLRNAPEALVIWADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V + +A+++ 
Sbjct: 185 NTYDVLVNDDVVFTAAALDSF 205


>gi|21553676|gb|AAM62769.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
          Length = 300

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 116/203 (57%), Gaps = 1/203 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   E+KG + ++ D+F +  ++ I+  V+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 91  IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRARH +    QFRGG    GP P      + K+VR L L+ AL+ +     +
Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIID-GCQLDRNFQLAARNIPNINLLPVQGIN 182
           +V D+L     KTK +V  +  ++ +  +++  G  +D   +LA +N+  +N++P  G+N
Sbjct: 211 LVFDDLGLPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 270

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VY IL    LV+S+ A+  + +R
Sbjct: 271 VYSILLHDTLVMSRDAVNKIVER 293


>gi|254383171|ref|ZP_04998525.1| 50S ribosomal protein L4 [Streptomyces sp. Mg1]
 gi|194342070|gb|EDX23036.1| 50S ribosomal protein L4 [Streptomyces sp. Mg1]
          Length = 216

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 102/202 (50%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK++  ALR ALSD+   
Sbjct: 61  GRKPYRQKGTGRARQGSTRAPQFVGGGVVHGPQPRDYSQRTPKKMKVAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V     TK   T F  +     +++   + D    L+ARN+P +++L    
Sbjct: 121 SRIHVVTGVVEGAASTKAAKTLFGKISERKNVLLVVERADEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++    +V +++A+E+ 
Sbjct: 181 LNTYDVIVSDDVVFTQAALESF 202


>gi|329118599|ref|ZP_08247303.1| 50S ribosomal protein L4 [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465334|gb|EGF11615.1| 50S ribosomal protein L4 [Neisseria bacilliformis ATCC BAA-1200]
          Length = 206

 Score =  188 bits (477), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N  G+  G +SVS+ +FA +  + ++ +++       R G      R+EV ++ 
Sbjct: 1   MELKVINAQGQVSGSLSVSDALFAREYNEALVHQLVTAYLANARSGNRAQLTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + VI+ L +   KTK    + +   L   L +   QLD N  L++RN+PN+ +L  Q 
Sbjct: 121 DRLCVIEQLAAATPKTKDFAEQVKNFGLEQVLFV-TKQLDENVYLSSRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+ Y +LR  K+V++K AIE LE+++
Sbjct: 180 IDPYSLLRYKKVVVTKDAIEQLEEQW 205


>gi|237742671|ref|ZP_04573152.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13]
 gi|256846066|ref|ZP_05551524.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2]
 gi|229430319|gb|EEO40531.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13]
 gi|256719625|gb|EEU33180.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2]
          Length = 209

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L+V NL G+  G + V++ +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPV 178
            +++V+D    +  KTK +V     +D     +     L  D N  L+ARN+ N  +L  
Sbjct: 121 GNVLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I VY +L+  K++L+K A+  +E+  
Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEEVL 208


>gi|218779761|ref|YP_002431079.1| 50S ribosomal protein L4 [Desulfatibacillum alkenivorans AK-01]
 gi|226730651|sp|B8FET4|RL4_DESAA RecName: Full=50S ribosomal protein L4
 gi|218761145|gb|ACL03611.1| ribosomal protein L4/L1e [Desulfatibacillum alkenivorans AK-01]
          Length = 206

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 119/206 (57%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N+ GE    I ++++IF ++ +  +L  V+  Q   +R G    K RS+V  +
Sbjct: 1   MAKVEVCNMSGEKVSEIDLADEIFGVEVKGSVLHEVVVMQLANRRAGTVCVKNRSDVRGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTGRAR         RGGG  FGP P    + +PKKVR  AL+ ALS K   
Sbjct: 61  TRKLYRQKGTGRARKGDIKSPVLRGGGVVFGPHPRDYSYKVPKKVRKAALKMALSSKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V+DN+   E KTK       A+ +  ALI+   + ++N +L+ARN+  + ++P  G
Sbjct: 121 NSLKVVDNMDLPEIKTKAFAEAMAAMGVDTALIVTTGE-EKNLELSARNVKGVKVMPTAG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+   L+L++ AIEA+E R 
Sbjct: 180 LNVYDILKYGNLILAQGAIEAIEGRL 205


>gi|29831470|ref|NP_826104.1| 50S ribosomal protein L4 [Streptomyces avermitilis MA-4680]
 gi|46577225|sp|Q82DP4|RL4_STRAW RecName: Full=50S ribosomal protein L4
 gi|29608585|dbj|BAC72639.1| putative ribosomal protein L4 [Streptomyces avermitilis MA-4680]
          Length = 221

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + + +  G++ G + +  +IF ++     +L +V+  Q    R G  K K R EV  
Sbjct: 1   MSTIDILSPSGDNAGTVELPAEIFDVEKISIPLLHQVVVAQLAAARQGTHKVKRRGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALRHAL+D+  
Sbjct: 61  GGKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRHALTDRAR 120

Query: 120 SNDIMVID-NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
           +  I VI   +  +   TK   +    +     +++   + D    L+ARN+P +++L  
Sbjct: 121 NARIHVITGVIEGETPSTKAAKSFLGKVSERKNVLLVIERSDEAALLSARNLPQVHILEP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    +V +++A E+ 
Sbjct: 181 GQLNTYDVLVSDDVVFTQAAFESF 204


>gi|255530515|ref|YP_003090887.1| 50S ribosomal protein L4/L1e [Pedobacter heparinus DSM 2366]
 gi|255343499|gb|ACU02825.1| ribosomal protein L4/L1e [Pedobacter heparinus DSM 2366]
          Length = 209

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N+ G++ G  + + E +F + P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MEVKVLNISGKETGAKVQLPESVFGITPVDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTG AR  S     F GGG+ FGP P      L KK++SLA + ALS K   
Sbjct: 61  TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKSLARKSALSYKAKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+++      KTK  +    A    +   ++     + N  L++RNI  + ++   
Sbjct: 121 NNVVVLEDFTFDTIKTKNYINLVSALNLTNEKTLLVLPTQNNNIYLSSRNIQKVKVITAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YD+L C KL+L+  +++ LE+ F
Sbjct: 181 QLNTYDVLNCGKLLLTADSVKTLEEAF 207


>gi|254294439|ref|YP_003060462.1| ribosomal protein L4/L1e [Hirschia baltica ATCC 49814]
 gi|254042970|gb|ACT59765.1| ribosomal protein L4/L1e [Hirschia baltica ATCC 49814]
          Length = 309

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 131/206 (63%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V NLD +  G + +++ +F ++  +  IL R++R+Q  +++ G  K++ RSEV  T
Sbjct: 1   MKLDVINLDAKKAGSVELNDAVFGIEDVRPDILQRMVRYQLAKRQAGTHKTQTRSEVNKT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
            ++   QKG G ARH S++   F GGG A GP      H L KK R+LAL+HALS K   
Sbjct: 61  KTRFGRQKGGGGARHGSRNAPIFVGGGVAHGPKVRSHAHDLTKKFRALALKHALSAKVKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++V++     E KTK L  +F AL L NAL+I G  LD NF  AARNIPNI++LP  G
Sbjct: 121 SSLIVLEEAAVSEVKTKALRAQFEALGLKNALVIGGESLDDNFAKAARNIPNIDVLPFAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD++R   LVL+K A++A+  RF
Sbjct: 181 LNVYDVMRRHTLVLTKEAVDAVHARF 206


>gi|111220547|ref|YP_711341.1| 50S ribosomal protein L4 [Frankia alni ACN14a]
 gi|111148079|emb|CAJ59747.1| 50S ribosomal protein L4 [Frankia alni ACN14a]
          Length = 236

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            +SV   +G D G   +   +F +     ++ +V+  Q    R G   +K R EV   G 
Sbjct: 17  TVSVHAPNGGDGGSAELPGGVFDVPLNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGR 76

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +N 
Sbjct: 77  KPYRQKGTGRARQGSLRAPQFTGGGVVHGPTPRSYDQRTPKKMKAAALRGALSDRARNNR 136

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+ +LVS +   TK  VT  R +  +  +++   + D     + RN+  ++LL    +
Sbjct: 137 VHVVSSLVSGEAPSTKAAVTALRTVADTRRVLVVASRTDELTWKSLRNVAAVHLLDPGQL 196

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V ++ A+ A   R
Sbjct: 197 NTYDVLVSDDVVFTEEALAAFLAR 220


>gi|326388198|ref|ZP_08209801.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207364|gb|EGD58178.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 207

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V  LDG   G + +S+ +F L+P+  IL RV+ WQ   +R    K++ RS+VA TG
Sbjct: 1   MKVQVLTLDGTAAGDVELSDAVFGLEPRADILHRVVTWQLENRRGIARKARERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG G ARH  +    F GGGKA GP       +L KKVR+L L+ ALS K  + 
Sbjct: 61  KKFGRQKGGGTARHGDRKAPVFIGGGKAHGPRVREFNISLNKKVRALGLKMALSAKAKTG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQG 180
            ++V+D L   + KTK LV +F        +++   + ++  F  AARNI  +N+LP  G
Sbjct: 121 -LVVVDTLDLADAKTKVLVGKFAKAGFGKKVLVVDGEAVNEGFARAARNIVGVNVLPAIG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL+   LVL+++A+E LE RF
Sbjct: 180 ANVYDILKHDTLVLTRAAVEKLEARF 205


>gi|309389932|gb|ADO77812.1| LSU ribosomal protein L4P [Halanaerobium praevalens DSM 2228]
          Length = 209

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++  N  G++   + ++E +F  K  + ++ +V+  Q   +R G + +K R +V   
Sbjct: 1   MPQVTKFNQSGKELEKVELNESVFNDKINKHVVHQVVNAQLAARRGGNASTKTRGKVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     + GGG  FGP P      L KK+R LALR  L+DK   
Sbjct: 61  GRKPWRQKGTGRARHGSIRSPLWVGGGITFGPSPRSYDKKLTKKMRRLALRSVLTDKVER 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++++++D L   + KTK +V            ++I   + D+N  L+ARNIP +  L   
Sbjct: 121 DELILVDKLELDQPKTKAVVNILADLNLEDKKVVIVMPEKDKNLYLSARNIPKVKTLLAG 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN YD+L    ++  + A++ +E+  
Sbjct: 181 SINAYDLLDNEMVIFIEEAVKMVEEVL 207


>gi|322418365|ref|YP_004197588.1| 50S ribosomal protein L4/L1e [Geobacter sp. M18]
 gi|320124752|gb|ADW12312.1| ribosomal protein L4/L1e [Geobacter sp. M18]
          Length = 207

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L V ++     G I VS+ +F    ++ ++   ++ Q   +R G    K RS VA +
Sbjct: 1   MAKLDVFDIKNAKVGEIEVSDAVFNDDVREYLIHEAVKIQLANRRQGTVAVKNRSAVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG+AR       Q+ GGG AFGP P     ++ KK R  ALR ALS  +  
Sbjct: 61  GKKPFKQKGTGQARQGCSRAPQYPGGGVAFGPQPKTYNLSMNKKARKAALRSALSMLYKK 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V++N      KTK  V    A +  +  ++     +   +L+ARN+ ++ +L  +G
Sbjct: 121 DAITVLNNFELPAVKTKGFVEVLNAFN-LDKTLVITDTANPTLELSARNVKHVKVLGPEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +N++DI++   +V +++A+  +E   +
Sbjct: 180 LNIFDIMKYQSVVFTEAAVRRVEGALQ 206


>gi|192359371|ref|YP_001981209.1| 50S ribosomal protein L4 [Cellvibrio japonicus Ueda107]
 gi|226730635|sp|B3PK38|RL4_CELJU RecName: Full=50S ribosomal protein L4
 gi|190685536|gb|ACE83214.1| ribosomal protein L4/L1 family [Cellvibrio japonicus Ueda107]
          Length = 204

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G   G ++VSE  F  +  Q ++ + +       R G    K R+EV+  G
Sbjct: 1   MELKIVNPGGAQ-GTVNVSEVAFGREFNQDLVHQAVVAYMAGARQGTKAQKTRAEVSGGG 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F   P      L +K+   AL+  LS+    +
Sbjct: 60  KKPWRQKGTGRARAGTIRSPIWRGGGVTFAAKPRDFEQKLNRKMYRAALQCILSELNRQD 119

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++      KTK LV +    DL++A +I    L  N  LA+RN+  + +  VQG+
Sbjct: 120 RLIVVESFDVDAPKTKALVQKLAQYDLTDA-LIVTEDLSENLYLASRNLHKVGVSDVQGV 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++  E+  
Sbjct: 179 DPVSLIGYDKVVVTVPALKKFEEIL 203


>gi|288917231|ref|ZP_06411600.1| ribosomal protein L4/L1e [Frankia sp. EUN1f]
 gi|288351422|gb|EFC85630.1| ribosomal protein L4/L1e [Frankia sp. EUN1f]
          Length = 247

 Score =  187 bits (476), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V    G D G + +   +F +     ++ +V+  Q    R G   +K R EV   G 
Sbjct: 22  TVPVHAPAGGDAGSVELPGAVFDVPLNVPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGR 81

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  ++ 
Sbjct: 82  KPYRQKGTGRARQGSLRAPQFTGGGVVHGPKPRNYDQRTPKKMKAAALRGALSDRARNDR 141

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+ +LV+     TK       +L  +  +++   + D    L+ RN+  ++LL    +
Sbjct: 142 VHVVSSLVAGDAPSTKAAFKALTSLVDARRVLVVAQRSDEQTWLSLRNVAAVHLLDPGQL 201

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V ++ A+ A   R
Sbjct: 202 NTYDVLVSDDVVFTEGALAAFLAR 225


>gi|56551414|ref|YP_162253.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761061|ref|ZP_04759150.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752973|ref|YP_003225866.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|81598314|sp|Q5NQ63|RL4_ZYMMO RecName: Full=50S ribosomal protein L4
 gi|56542988|gb|AAV89142.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374680|gb|EER64141.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552336|gb|ACV75282.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 207

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 78/206 (37%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V++LD   KG I +++ +F ++P+  IL RV+ WQ  ++R     ++ RS+VA +G
Sbjct: 1   MKVEVQSLDASKKGSIELNDAVFGIEPRADILHRVVTWQLEKRRAPTRATRERSDVARSG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG G ARH  +    F GGGKA G    +   +L KKVR+L LR ALS K  + 
Sbjct: 61  KKFGRQKGGGTARHGDRRSPIFIGGGKAHGARARVFNPSLNKKVRALGLRMALSSKAKTG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQG 180
            ++VI+ L  +  KTK L  + ++L     +++ DG  ++ NF  A+ N+  +++LP  G
Sbjct: 121 TLVVIEALDVEA-KTKLLAAQIQSLGFGPKVLVVDGDTVNENFARASSNLVGLDVLPAVG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL+   LVL+++A+E LE R 
Sbjct: 180 ANVYDILKHDTLVLTRAAVEKLEARL 205


>gi|262066303|ref|ZP_06025915.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|294783641|ref|ZP_06748965.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA]
 gi|291379998|gb|EFE87516.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|294480519|gb|EFG28296.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA]
          Length = 209

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L+V NL G+  G + V++ +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPV 178
            +++V+D       KTK +V     +D     +     L  D N  L+ARN+ N  +L  
Sbjct: 121 GNVLVLDYEGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I VY +L+  K++L+K A+  +E+  
Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEEVL 208


>gi|94987403|ref|YP_595336.1| 50S ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00]
 gi|166234679|sp|Q1MPR2|RL4_LAWIP RecName: Full=50S ribosomal protein L4
 gi|94731652|emb|CAJ55015.1| ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00]
          Length = 206

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 118/207 (57%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N   E+ G I++S  IF ++ Q  IL  V+R Q   KR G    K R  V+  
Sbjct: 1   MAIVTVYNQQKEETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S     +RGGG  FGP P      + KK+RSLAL  ALS +F  
Sbjct: 61  GAKPWRQKGTGRARAGSNRSPLWRGGGIVFGPQPRDYSFKVNKKIRSLALCMALSSRFAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++VIDN+V  E KTK+ V     L L  ALI+   +      L+ RN+PN+ LL    
Sbjct: 121 ENLIVIDNIVLPEIKTKHFVGVANILGLHKALIVAPVES-TQLLLSMRNVPNVKLLTYDR 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NVYDIL+  +LVL + A++ +E R K
Sbjct: 180 LNVYDILKYKQLVLLEGAVQHIEARLK 206


>gi|326524247|dbj|BAK00507.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 289

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 75/201 (37%), Positives = 117/201 (58%), Gaps = 1/201 (0%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           V N   EDKG + +  D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K Y
Sbjct: 82  VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPY 141

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     + +
Sbjct: 142 KQKGTGRARHGTLRGCQFRGGATMHGPKPRSHAFKLQKKVRRLGLKIALSARTAEGKLCI 201

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
            ++L     KTK +V   + +D +  + ++DG  +D+  +LA +N+  +N++P  G+NVY
Sbjct: 202 FEDLEVPSHKTKNIVQYIKQMDDTKKILLVDGGDIDKKLKLATQNLHYVNVIPSIGLNVY 261

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            IL+   LV+++ AI  + +R
Sbjct: 262 SILQHDTLVMTRDAINRIVER 282


>gi|323340375|ref|ZP_08080632.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644]
 gi|323092151|gb|EFZ34766.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644]
          Length = 207

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G + +++ +F ++P   ++   +  Q    R G    K RS V   
Sbjct: 1   MPTVALFKQDGTQNGDVQLNDAVFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  FGP P    + LP+KVR LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPRKVRRLAIKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D L  +  KTK        LD+ + +++     ++   LAARN+ N+ ++P +G
Sbjct: 121 NSLVVVDALTFEAPKTKAFAEVLNNLDVKSKVLVVLEDDNKTAALAARNLANVTVIPAKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++   KLV++K A+  +E+  
Sbjct: 181 LNVLDVVNNDKLVITKGALSQVEEVL 206


>gi|253581391|ref|ZP_04858617.1| LSU ribosomal protein L1E [Fusobacterium varium ATCC 27725]
 gi|251836755|gb|EES65289.1| LSU ribosomal protein L1E [Fusobacterium varium ATCC 27725]
          Length = 210

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 5/210 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ +L G   G + V + +F ++P Q +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNIYDLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176
            DI+V+D       KTK ++    A++ +   +     L    D N  L+ RN+ N  +L
Sbjct: 121 GDILVLDG-TIDTPKTKTIIALTNAINATTKQLFVVNDLAEQADYNLYLSVRNLENAVVL 179

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               I VY +L+  K++L+K A+  +E+  
Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEEVL 209


>gi|298491399|ref|YP_003721576.1| 50S ribosomal protein L4/L1e ['Nostoc azollae' 0708]
 gi|298233317|gb|ADI64453.1| ribosomal protein L4/L1e ['Nostoc azollae' 0708]
          Length = 210

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+E  V+N  GE  G  S    +   +    I+ R L  Q    R G + +K RSEV   
Sbjct: 1   MVESVVKNWQGEQVGETSFDLRVAKQETAAHIVHRALVRQMTNSRQGTASTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      L +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNLKLNRKERRLALRTAFVSRAED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++   +   +  KTK LV              ++   ++  N  L+ARNI N+ L+  
Sbjct: 121 LIVVEEFSNELQRPKTKDLVAALARWGAAQEQKSLLILSEIAENVLLSARNIENLKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   K+V++ +A+E +++ +
Sbjct: 181 DQLNVYDLLHADKIVVTPAALEKIQEVY 208


>gi|149279663|ref|ZP_01885792.1| 50S ribosomal protein L4 [Pedobacter sp. BAL39]
 gi|149229699|gb|EDM35089.1| 50S ribosomal protein L4 [Pedobacter sp. BAL39]
          Length = 209

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N+ G++ G  + + E +F + P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MEVKVLNISGKETGAKVQLPESVFGITPVDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTG AR  S     F GGG+ FGP P      L KK++ LA + ALS K   
Sbjct: 61  TRKLYKQKGTGGARAGSIKSPLFNGGGRVFGPQPRDYSFKLNKKLKVLARKSALSYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V+++      KTK  V    A        ++     + N  L++RNI    ++   
Sbjct: 121 NNVVVLEDFSFDSIKTKNYVNLVSALNLAGEKTLLVLPSQNNNIYLSSRNIQKAKVITAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YD+L C KL+L+  +++ LE+ F
Sbjct: 181 QLNTYDVLNCGKLLLTADSLKTLEEAF 207


>gi|126657989|ref|ZP_01729141.1| 50S ribosomal protein L4 [Cyanothece sp. CCY0110]
 gi|126620627|gb|EAZ91344.1| 50S ribosomal protein L4 [Cyanothece sp. CCY0110]
          Length = 210

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++ +V+N  GE+ G  ++   +   +    +L R +       R G + SK R+EV   
Sbjct: 1   MVDCNVKNWQGEEVGQATLELKVAKDETASHLLHRAVVRHLANARQGTASSKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A+  +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFGLKMNRKERRLALRTAIGSRAED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178
             ++        + KTK L +      +     +     + D N  L+ARNI  + ++  
Sbjct: 121 MIVVENFAEQLPQPKTKELASALGRWGVEPNQKVALVLVETDENIYLSARNICYLKIMRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   K+V++  A+  +++ +
Sbjct: 181 DSLNVYDLLDADKIVITSEALTKIQEVY 208


>gi|222056704|ref|YP_002539066.1| ribosomal protein L4/L1e [Geobacter sp. FRC-32]
 gi|254803736|sp|B9M6U4|RL4_GEOSF RecName: Full=50S ribosomal protein L4
 gi|221565993|gb|ACM21965.1| ribosomal protein L4/L1e [Geobacter sp. FRC-32]
          Length = 207

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 116/207 (56%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L V N   +  G I +S+ +F  + ++ ++   ++ Q   +R G    K R+ V+ +
Sbjct: 1   MAKLDVYNTSHKKVGEIELSDAVFNDEVREYLIHEAVKIQLANRRAGTVAVKNRAAVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG+AR   K   Q+ GGG AFGP P     ++ KK R  ALR ALS  F +
Sbjct: 61  GKKPFKQKGTGQARQGCKRAPQYPGGGVAFGPQPKTYNLSMNKKARRAALRSALSLLFKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V+D +      TK  V   +   L  AL++   + +RN +L+ARNI N+ +L  +G
Sbjct: 121 DKLTVLDAINLDTVSTKNFVGVLKGFSLDKALVVTDAE-NRNLELSARNIKNVKVLKTEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +N++D+++  +++ +++++  +E   +
Sbjct: 180 LNIFDLMKYQRVIFTENSVRKVEGALQ 206


>gi|237736171|ref|ZP_04566652.1| LSU ribosomal protein L1E [Fusobacterium mortiferum ATCC 9817]
 gi|229421724|gb|EEO36771.1| LSU ribosomal protein L1E [Fusobacterium mortiferum ATCC 9817]
          Length = 210

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 110/210 (52%), Gaps = 5/210 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ NL G   G + V + +F ++P Q +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNIYNLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176
            D++V+D    +  KTK +V    A++ +N  +     L    D N  L+ RN+ N  +L
Sbjct: 121 GDVLVLDG-TIETPKTKTIVALTNAINATNKQLFVVNDLAEMNDYNLYLSVRNLENAVVL 179

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               I VY +L+  K++++K A+  +E+  
Sbjct: 180 QPNEIGVYWLLKQEKVIITKEALTTIEEVL 209


>gi|156743947|ref|YP_001434076.1| 50S ribosomal protein L4/L1e [Roseiflexus castenholzii DSM 13941]
 gi|156235275|gb|ABU60058.1| ribosomal protein L4/L1e [Roseiflexus castenholzii DSM 13941]
          Length = 221

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 111/199 (55%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  + N  GE+ GVI +S+ +F ++P   ++ + +  Q    R+G   + GR EV  + 
Sbjct: 1   MEAKLYNQSGEEVGVIQISDYVFGIEPNVPVMHQAMERQRANARLGTHNTLGRGEVEGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRAR  S      +GGG A GP P      +P+K+R LA+R ALS +    
Sbjct: 61  RKLYRQKGTGRARQGSIRAPHRKGGGIAHGPHPRSYTKDMPRKMRRLAVRSALSARHRDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+ +D L  ++ +TK ++    AL+L+   +I   + D + + +A N+PN+  L    +
Sbjct: 121 AILFLDRLTFEQPRTKDMIAVLNALNLTGKTLIVLDRKDEHVRRSANNLPNVKTLLAHYL 180

Query: 182 NVYDILRCSKLVLSKSAIE 200
           NV D+L    +V+ K+A++
Sbjct: 181 NVIDLLTHDHVVMLKAAVD 199


>gi|323357371|ref|YP_004223767.1| ribosomal protein L4 [Microbacterium testaceum StLB037]
 gi|323273742|dbj|BAJ73887.1| ribosomal protein L4 [Microbacterium testaceum StLB037]
          Length = 220

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 1/200 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L V   DG+  G + +  DIF +K    ++ +V+  Q    R G   +K R EV+  G K
Sbjct: 8   LDVVKADGKKAGSVELPADIFDVKTNIPLIHQVVVAQRAAARQGTHSTKRRGEVSGAGRK 67

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTG AR  S       GGG   GP P       PKK+ + AL  ALSD+     +
Sbjct: 68  PFKQKGTGNARQGSIRAPHMTGGGIVHGPKPRDYSQRTPKKMIAAALLGALSDRARGQRL 127

Query: 124 MVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
            ++D+   +    TK      +A      +++   + D     + RN+  +++L V  +N
Sbjct: 128 HIVDSFAIEGAPSTKAAAAALKAFGAVKNVLVVIERDDELTIKSVRNLAYVHVLTVGQLN 187

Query: 183 VYDILRCSKLVLSKSAIEAL 202
            YD++    +V +K+A +A 
Sbjct: 188 TYDVVVSDDIVFTKAAYDAF 207


>gi|257470827|ref|ZP_05634917.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185]
 gi|317065031|ref|ZP_07929516.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185]
 gi|313690707|gb|EFS27542.1| 50S ribosomal protein L4 [Fusobacterium ulcerans ATCC 49185]
          Length = 210

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 5/210 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ +L G   G + V + +F ++P Q +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNIYDLTGTQTGTVEVKDTVFGIEPNQAVLHEVLTAELAAARQGTAATKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176
            DI+V+D       KTK ++    A++ +   +     L    D N  L+ RN+ N  +L
Sbjct: 121 GDILVLDG-TIDTPKTKTIIALTNAVNATTKQLFVVNDLAEQADYNLYLSVRNLENAVVL 179

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               I VY +L+  K++L+K A+  +E+  
Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEEVL 209


>gi|162449113|ref|YP_001611480.1| hypothetical protein sce0843 [Sorangium cellulosum 'So ce 56']
 gi|161159695|emb|CAN91000.1| rplD [Sorangium cellulosum 'So ce 56']
          Length = 207

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 107/204 (52%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++++V NL  E  G + +S+++F  + ++ +   V++ Q   +R G   +K RS VA + 
Sbjct: 1   MKVTVYNLKREQVGELDLSDEVFGTEVKEHLFYEVVKAQLASRRSGTKATKERSAVAGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRAR  S       GGG A    P    +  P+KVR  AL+ ALS      
Sbjct: 61  KKLYRQKGTGRARQGSIRAPHHAGGGMAHALEPKDWSYRPPRKVRIGALKSALSLFAKEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+L   E KTK +      L      ++     +     + RN+ N   LP +G+
Sbjct: 121 RLIVLDSLEVSEIKTKAIAATLTTLQADRKSLVVDTAGNDKLVKSLRNLENHQYLPPEGV 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           NVYD+LR   L++S+ A +ALE R
Sbjct: 181 NVYDLLRHDHLIVSRDAAKALEAR 204


>gi|46579715|ref|YP_010523.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602808|ref|YP_967208.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris DP4]
 gi|81566853|sp|Q72CH9|RL4_DESVH RecName: Full=50S ribosomal protein L4
 gi|166234662|sp|A1VEB5|RL4_DESVV RecName: Full=50S ribosomal protein L4
 gi|46449130|gb|AAS95782.1| ribosomal protein L4 [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563037|gb|ABM28781.1| LSU ribosomal protein L4P [Desulfovibrio vulgaris DP4]
 gi|311233506|gb|ADP86360.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris RCH1]
          Length = 206

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V + + ++ G I+++ ++F ++ +  IL  V+R Q    R G   +K R+ V+  
Sbjct: 1   MAVVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P      + KKVR LALR ALS +   
Sbjct: 61  GLKPWRQKGTGRARAGSIRSPLWRGGAIIFGPQPRDYEFKVNKKVRKLALRMALSSRLAG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+      E KTK L  +       +  +I   + +    L+ RNIP I +   + 
Sbjct: 121 SNLLVVKGFELPEVKTK-LFAKIADTLGLDKALIIAPEENTTLALSVRNIPGITIATPEQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++VY+IL+  +LVL + A+ +++DR K
Sbjct: 180 LSVYEILKHKQLVLVEGAVASVQDRLK 206


>gi|283853154|ref|ZP_06370407.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B]
 gi|283571412|gb|EFC19419.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B]
          Length = 210

 Score =  187 bits (475), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 105/206 (50%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +   ++ G + +  ++F ++ Q  +L  V+R Q   KR G    K R+ V+  
Sbjct: 1   MANIKLYDQGNQEIGTVELDPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG    GP P      + +KVR LALR ALS K   
Sbjct: 61  GKKPWRQKGTGRARAGSTRSPLWRGGAVVHGPEPRDYTFKVNRKVRQLALRMALSAKLGD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++D L   E KTK +V            +I     D N +L+ARNIP I ++    
Sbjct: 121 ASLVLVDTLAVPEVKTKLMVKVTSDFG-LKKALIVLPASDNNLELSARNIPGIKVVREDM 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR   LV+ K A   +++R 
Sbjct: 180 LNVYDILRHDHLVMVKDAALKVQERL 205


>gi|319948722|ref|ZP_08022843.1| 50S ribosomal protein L4 [Dietzia cinnamea P4]
 gi|319437624|gb|EFV92623.1| 50S ribosomal protein L4 [Dietzia cinnamea P4]
          Length = 229

 Score =  187 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L VR   G   G + +  +IF ++P   ++ +V+  Q    R G   +K R EV+  G 
Sbjct: 11  KLDVRTPAGSTDGSVELPAEIFGVEPNLPLMHQVVVAQLAAARQGTHSTKTRGEVSGGGR 70

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GP P       PKK+++ ALR ALSD+  S  
Sbjct: 71  KPFRQKGTGRARQGSTRAPAYTGGGTVHGPKPRDYSQRTPKKMKAAALRGALSDRAASER 130

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  ++  T  +      L      +I   + D     +A N+ +++ +    +
Sbjct: 131 IHVVTEFVEGQKPSTSGVRDFLGTLSDRKKFLIVVGREDLAAWRSAANLDHVHPIAPDQL 190

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A++A 
Sbjct: 191 NTYDVLNADDVVFSVEALDAF 211


>gi|46577159|sp|P61069|RL4_SPIKU RecName: Full=50S ribosomal protein L4
 gi|34849394|gb|AAP58893.1| ribosomal protein L4 [Spiroplasma kunkelii CR2-3x]
          Length = 208

 Score =  187 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V + +G     ISV++ I+ ++P Q  +   +  Q    R G  K+K ++EV+  G
Sbjct: 1   MKLQVLDANGTSVKEISVNDAIWGIEPHQQAMFDAVIAQQASMRQGTHKTKTKTEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  S    Q++GGG  FGP P       + KKVR LA++ A S K   
Sbjct: 61  RKPWRQKGTGRARQGSIRAPQWKGGGIVFGPTPEKKYLKHVNKKVRKLAIKSAFSLKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +IM+ID     +  TK +V            L+I   + D     ++RNI  +N++   
Sbjct: 121 KNIMIIDQFGIDKPSTKAMVKVLNNLKVNGEKLLIITTEGDEVNFKSSRNIEKVNIITSA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           GIN+YD+L  +KL++++ AI+A+E+ +
Sbjct: 181 GINIYDLLNANKLLVTEQAIKAIEEVY 207


>gi|297717844|gb|ADI50065.1| LSU ribosomal protein L4p [Candidatus Odyssella thessalonicensis
           L13]
          Length = 206

 Score =  187 bits (474), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 87/206 (42%), Positives = 126/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V N++ +  G I ++ +IF L+P+  IL+RV+ WQ  ++R G  K+K   +V  + 
Sbjct: 1   MKIDVINIEAKKAGDIELNPEIFGLQPRVDILSRVIEWQLAKRRSGNHKTKEVGDVRGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH SK   QFRGG   FGPV     ++LPKKVR L L+ ALS K  + 
Sbjct: 61  RKIYRQKGTGNARHGSKRQVQFRGGCVVFGPVVRSHAYSLPKKVRKLGLKIALSAKTQAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180
           +++V+D+      KTK L+    AL   NAL+ID     D     AA N+   ++LP  G
Sbjct: 121 ELIVVDSFKVATGKTKDLLKIITALQAPNALLIDAIANSDNPVVKAAANLEKFDVLPHNG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDI+R  KL+++K AI+ALE+R 
Sbjct: 181 ANVYDIMRKEKLIVTKEAIKALEERL 206


>gi|257054471|ref|YP_003132303.1| 50S ribosomal protein L4P [Saccharomonospora viridis DSM 43017]
 gi|256584343|gb|ACU95476.1| LSU ribosomal protein L4P [Saccharomonospora viridis DSM 43017]
          Length = 228

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 1/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             + ++   GE +G + +  +IF ++    ++ +V+  Q    R G   +K R EV   G
Sbjct: 3   ATVELKTPTGEAQGTVELPSEIFDVQANIPLMHQVVVAQMAAARQGTHDTKTRGEVRGGG 62

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  + 
Sbjct: 63  RKPYRQKGTGRARQGSIRAPQFVGGGTVHGPTPRDYTQRTPKKMKAAALRGALSDRARAG 122

Query: 122 DI-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + ++ + +  ++  TK       A+  +  +++   + D   +L+ARN+P ++LL    
Sbjct: 123 QVHIITELVTGEKPSTKAAKAALAAVTQAKRILVVLHRDDELGRLSARNLPYVHLLTPDQ 182

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD+L    +V +K+A +A 
Sbjct: 183 LNTYDVLVNDDVVFTKAAFDAF 204


>gi|302336381|ref|YP_003801588.1| LSU ribosomal protein L4P [Olsenella uli DSM 7084]
 gi|301320221|gb|ADK68708.1| LSU ribosomal protein L4P [Olsenella uli DSM 7084]
          Length = 208

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V+N++G+  G + +S+ +F + P   ++ +V+       R G   +K RS V+  
Sbjct: 1   MSKIEVKNVEGKAAGEVELSDSVFGITPNIPVMHQVVVAYEASMRQGTHSTKNRSSVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K Y QKGTGRAR  +    Q+ GGG  FGP P      +  K + LA+R ALS K   
Sbjct: 61  GAKPYRQKGTGRARQGTIRAPQWVGGGVVFGPTPRSHAKRVNNKEKKLAMRSALSGKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++++++D L  KE KTK  V   +AL +    + I     D    LA RN+P ++++   
Sbjct: 121 SELILVDELYFKEPKTKLAVAALKALGIEGKRVTIVVADDDVITYLAFRNLPKVSIIAAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             N  +++    LV+S +  + LE+  
Sbjct: 181 EANTRNLVDNGALVMSTAVAKQLEEVL 207


>gi|91205876|ref|YP_538231.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C]
 gi|157826765|ref|YP_001495829.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389]
 gi|109893633|sp|Q1RHM2|RL4_RICBR RecName: Full=50S ribosomal protein L4
 gi|166199856|sp|A8GVB5|RL4_RICB8 RecName: Full=50S ribosomal protein L4
 gi|91069420|gb|ABE05142.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C]
 gi|157802069|gb|ABV78792.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389]
          Length = 207

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/207 (42%), Positives = 122/207 (58%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + NL  E+ G IS++EDIFA++  +  I+ +V+ WQ  +   G  K+K  SEV+ T
Sbjct: 1   MKTKILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG   GPV       LPKKVR L L HALS+KF  
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L  +  KT  LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 121 GKLLVIDSLKLETPKTSNLVNILNKFQGKSFFVIDGNEVDVNFSLAAQNIYNTVVVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R K
Sbjct: 181 ANVYDIIRHEYVLLSQEAVNVLEERLK 207


>gi|301118172|ref|XP_002906814.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4]
 gi|262108163|gb|EEY66215.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4]
          Length = 277

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/206 (38%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 3   ELSVRNL--DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           EL + +L  D +D G IS+  ++F    +  IL RV+RWQ   +R G +K+K RSEV+ +
Sbjct: 69  ELKMLSLAEDTQDLGSISMDGEVFGAPDRVDILQRVVRWQLACRRAGTNKTKTRSEVSGS 128

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKG+GRAR       Q+RGG +  GPV     ++LPKKVR++ LR ALS K   
Sbjct: 129 TRKPWKQKGSGRARVGDIRAPQWRGGYRVHGPVLRDFSYSLPKKVRAMGLRVALSTKLRE 188

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + ++D+L     KTK +          +AL + G +++ +F LA RNIP+++ L    
Sbjct: 189 GKLAIVDSLDVDITKTKDMKKLLGGRGWDHALFVGGEEVESSFVLATRNIPHVDTLAQNK 248

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVY IL+   L+++K A++ LE+R 
Sbjct: 249 INVYSILQKDLLIITKDAVKYLEERL 274


>gi|18399235|ref|NP_565463.1| ribosomal protein L4 family protein [Arabidopsis thaliana]
 gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
 gi|20197568|gb|AAD24390.2| 50S ribosomal protein L4 [Arabidopsis thaliana]
 gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
 gi|330251866|gb|AEC06960.1| large subunit ribosomal protein L4 [Arabidopsis thaliana]
          Length = 300

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 68/203 (33%), Positives = 116/203 (57%), Gaps = 1/203 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   E+KG + ++ D+F +  ++ I+  V+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 91  IPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRK 150

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRARH +    QFRGG    GP P      + K+VR L L+ AL+ +     +
Sbjct: 151 PWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKL 210

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIID-GCQLDRNFQLAARNIPNINLLPVQGIN 182
           +V D+L     KTK +V  +  ++ +  +++  G  +D   +LA +N+  +N++P  G+N
Sbjct: 211 LVFDDLGLPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSIGLN 270

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VY IL    L++S+ A+  + +R
Sbjct: 271 VYSILLHDTLLMSRDAVNKIVER 293


>gi|329901063|ref|ZP_08272689.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549263|gb|EGF33841.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 207

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+    ++  + IF     + ++ +V+       R G SK K R EV +T 
Sbjct: 1   MELKLLNDQGQAASDVAAPDTIFGRDYNEALIHQVVVAYQANARSGNSKQKNREEVHHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L   LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDQNYSHKVNKKMYRAGLCSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I VI+ +  +  KTK L ++ + + L  +++I    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRISVIEEISLEAPKTKLLSSKLKEMGLLESVLIIADTIDENLALASRNLPHVLIVEPRH 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K+V++K+A+  +E+  
Sbjct: 181 ADPVSLVFYKKIVITKAALAKIEEML 206


>gi|288942071|ref|YP_003444311.1| 50S ribosomal protein L4/L1e [Allochromatium vinosum DSM 180]
 gi|288897443|gb|ADC63279.1| ribosomal protein L4/L1e [Allochromatium vinosum DSM 180]
          Length = 203

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 110/205 (53%), Gaps = 3/205 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+++RN  G     + VS+ +F ++ + G++ +V+       R G    K R+ V+  G
Sbjct: 1   MEIAIRNHTG--ASSVQVSDAVFGVEYKPGLVHQVVTAYMAGARAGTKAQKNRAAVSGGG 58

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SK + QKGTGRAR  +     +R GG  F   P      + +K+   A+R  LS+   + 
Sbjct: 59  SKPWRQKGTGRARAGTSRSPLWRSGGVTFAAQPRDYGQKVNRKMYRGAVRSILSELVRTE 118

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+  L  +E KTK L+   ++ DL++A +I     D    LAARN+P +++L  Q +
Sbjct: 119 RLVVVSELALEEAKTKALIALLKSHDLTDA-LILTDGFDDTLYLAARNLPKVDVLSAQEV 177

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    ++ +++AI+ LE+R 
Sbjct: 178 DPVSLVAFETILATEAAIKKLEERL 202


>gi|304570676|ref|YP_001805429.2| 50S ribosomal protein L4 [Cyanothece sp. ATCC 51142]
          Length = 210

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++ +V+N  GE+ G  ++   +   +    +L R +       R G + +K R+EV   
Sbjct: 1   MVDCNVKNWQGEEVGQTTLELKVAKDETASHLLHRAVVRHLANARQGNASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A+  +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSLKMNRKERRLALRTAIGSRVED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178
             ++        + KTK L +      +     +     + D N  L+ARN+ ++ +L  
Sbjct: 121 MIVVENFAEQLPQPKTKELASALTRWGVEPTQKVALVLVETDANIYLSARNLCHVKILRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   K+V++  AI  +++ +
Sbjct: 181 DSLNVYDLLDADKIVITSEAISKIQEVY 208


>gi|297571934|ref|YP_003697708.1| ribosomal protein L4/L1e [Arcanobacterium haemolyticum DSM 20595]
 gi|296932281|gb|ADH93089.1| ribosomal protein L4/L1e [Arcanobacterium haemolyticum DSM 20595]
          Length = 215

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ + +  G   G  ++  + F L+    ++ +V+  Q    R G  K+K R EV   G 
Sbjct: 5   KVDILDTTGAKAGSATLPAESFDLEINIPLIHQVVVAQLAAARQGTHKTKTRGEVRGGGV 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG   GP P       PKK+ + ALR ALSD+  +  
Sbjct: 65  KPFKQKGTGRARQGSIRAPHFTGGGTVHGPRPRDYSQRTPKKMIAAALRQALSDRARNGR 124

Query: 123 IMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+  +V      TK  +     +      ++   + +    L+ RN+   + L V  +
Sbjct: 125 IHVVTGIVDSATPSTKAALNLVSKVAEQRGALVVLERNEETAVLSLRNLQEAHTLYVDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    ++ +++A++  
Sbjct: 185 NAYDVLVADDVIFTQAALDTF 205


>gi|68536922|ref|YP_251627.1| 50S ribosomal protein L4 [Corynebacterium jeikeium K411]
 gi|109893588|sp|Q4JT48|RL4_CORJK RecName: Full=50S ribosomal protein L4
 gi|68264521|emb|CAI38009.1| 50S ribosomal protein L4 [Corynebacterium jeikeium K411]
          Length = 217

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   DG+  G + +   IF  +    ++ +V+  Q   KR G   +K R  V+  G 
Sbjct: 5   KLDVHTADGKTNGTVELPASIFDAEASVALMHQVVTAQLAAKRQGTHATKTRGMVSGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG   GP P       PKK+++ ALR AL+D+   + 
Sbjct: 65  KPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRVRHDR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V++ LV  +   TK        L    ++++   + D     +  N+P ++ L    +
Sbjct: 125 IHVVEELVPGQTPSTKAARAFIERLTDRKSVLVVLTREDVTAWKSVNNLPQVHTLVNDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A+ A 
Sbjct: 185 NTYDVLNADDVVFSVEALNAF 205


>gi|254785080|ref|YP_003072508.1| 50S ribosomal protein L4 [Teredinibacter turnerae T7901]
 gi|259491576|sp|C5BQ62|RL4_TERTT RecName: Full=50S ribosomal protein L4
 gi|237685352|gb|ACR12616.1| ribosomal protein L4 [Teredinibacter turnerae T7901]
          Length = 204

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +ELS+    G   G ++VSE  F  +  Q ++ + +       R G    K R+ V+  G
Sbjct: 1   MELSIVTPQGAK-GTVAVSEVAFGKEFNQDLVHQAVVAYMAGSRQGTKAQKNRAAVSGGG 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      L KK+   ALR  LS+     
Sbjct: 60  KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAQPRDFEQKLNKKMYRAALRCILSELARQE 119

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV +    DL++A +I   Q+  N  LAARN+  +++  VQ I
Sbjct: 120 RLVVVEEFDLDAPKTKILVQKLAEYDLTDA-LIVSEQVSENLYLAARNLHKVDVRDVQAI 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++R  K+V++ SA++ LE+  
Sbjct: 179 DPVSLIRFEKVVMTVSAVKKLEEVL 203


>gi|147767815|emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]
          Length = 278

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/203 (37%), Positives = 116/203 (57%), Gaps = 1/203 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   EDKG + ++ D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 69  IPVTNFHNEDKGFMXLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 128

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     +
Sbjct: 129 PWRQKGTGRARHGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKL 188

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +V D+L     KTK +V   + ++     L++DG  +    +LA +N+  +N+LP  G+N
Sbjct: 189 LVFDDLEVPSHKTKNIVNYVKEMENXKKLLLVDGGPITEKLKLATQNLHYVNVLPSIGLN 248

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VY IL    LV+S+ A+  + +R
Sbjct: 249 VYSILLHDTLVMSRBAVNKIVER 271


>gi|94498477|ref|ZP_01305033.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58]
 gi|94422020|gb|EAT07065.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58]
          Length = 207

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/205 (41%), Positives = 124/205 (60%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++++V+ LD +  G + +++ +F ++P+  IL RV+ WQ  ++R     ++ RS+VA TG
Sbjct: 1   MKVNVQTLDAQTAGELELNDAVFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG G ARH  +    F GGGKA G       H L KKVR+L L+ ALS K    
Sbjct: 61  KKFGRQKGGGTARHGDRKAPIFIGGGKAHGARARDFGHDLNKKVRALGLKMALSAKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+    E KTK LV     L+L+ AL IDG  ++ +F  A+ NI  +NLLP  G 
Sbjct: 121 SLIVLDSFDVAEGKTKTLVAHLAKLNLNKALFIDGDAVNVSFAKASANIVGVNLLPAVGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL+   LVL+++A+E LE RF
Sbjct: 181 NVYDILKADSLVLTRAAVEKLEARF 205


>gi|239905859|ref|YP_002952598.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1]
 gi|259491554|sp|C4XLX4|RL4_DESMR RecName: Full=50S ribosomal protein L4
 gi|239795723|dbj|BAH74712.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1]
          Length = 210

 Score =  186 bits (473), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 106/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N   ++ G + ++ ++F ++ Q  +L  V+R Q   KR G    K R+ V+  
Sbjct: 1   MANVKLFNQGCQEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG    GP P      + +KVR LALR ALS K   
Sbjct: 61  GKKPWRQKGTGRARAGSTRSPLWRGGAVVHGPQPRDYTFKVNRKVRQLALRMALSAKLVE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++++D +   E KTK +             +I   + D N +L+ARN+P I ++    
Sbjct: 121 DQLVLLDAIAFPEVKTKLMAKVVSDFS-WKKALIVLPESDNNLELSARNLPGIKVVRQDM 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L    +V+ K A   +++R 
Sbjct: 180 LNVYDVLLHDHVVMMKDAALKVQERL 205


>gi|88704377|ref|ZP_01102091.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71]
 gi|88701428|gb|EAQ98533.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71]
          Length = 205

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +ELS+     E  G +SVS+  FA +  + ++ +V+       R G    K RS+V+  G
Sbjct: 1   MELSILKPGNESAGTLSVSDANFAREYNEDLVHQVVTSFLAGARQGTRAQKTRSDVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + +K+   AL+  +S+    +
Sbjct: 61  KKPWRQKGTGRARAGTIRSPIWRSGGVTFAARPQDHSVKVNRKMYRAALKTIMSELTRQD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++ L     KTK LV +     +++AL+I   Q++ N  LA+RN+  +++  VQ I
Sbjct: 121 RLVVVETLDLDAPKTKLLVNQLDGYGVNSALLI-ADQVNENLYLASRNLQKVDVRDVQAI 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   +L   K++++  AI+ +E+  
Sbjct: 180 DPVSLLAHDKVMVTVDAIKKIEEML 204


>gi|294010614|ref|YP_003544074.1| ribosomal protein L4 [Sphingobium japonicum UT26S]
 gi|292673944|dbj|BAI95462.1| ribosomal protein L4 [Sphingobium japonicum UT26S]
          Length = 207

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/205 (41%), Positives = 123/205 (60%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V+ LD    G + +++ +F ++P+  IL RV+ WQ  ++R     ++ RS+VA TG
Sbjct: 1   MKVKVQTLDAAAAGEVELNDAVFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG G ARH  +    F GGGKA G       H L KKVR+L L+ ALS K    
Sbjct: 61  KKFGRQKGGGTARHGDRKAPVFIGGGKAHGARARTFGHDLNKKVRALGLKMALSSKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DNL   E KTK LV     L+L+ AL IDG  ++ +F  A+ NI  ++LLP  G 
Sbjct: 121 SLIVLDNLDVAEGKTKALVAHLAKLNLNKALFIDGDAVNVSFAKASANIIGVDLLPAVGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL+   LVL+++A+E LE RF
Sbjct: 181 NVYDILKADSLVLTRAAVEKLEARF 205


>gi|225020387|ref|ZP_03709579.1| hypothetical protein CORMATOL_00394 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679737|ref|ZP_07402547.1| 50S ribosomal protein L4 [Corynebacterium matruchotii ATCC 14266]
 gi|224946776|gb|EEG27985.1| hypothetical protein CORMATOL_00394 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660357|gb|EFM49854.1| 50S ribosomal protein L4 [Corynebacterium matruchotii ATCC 14266]
          Length = 216

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V+   G   G + +  +IF  +    +L +V+  Q   +R G   +K R EV   G 
Sbjct: 5   TLDVQTAAGSTAGQVELPAEIFDREVSISLLHQVVNAQLAARRQGTHSTKTRGEVRGGGK 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG + GP P       PKK+   AL  ALSD+     
Sbjct: 65  KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRNYSQRTPKKMIKAALYGALSDRARHAR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V+D LV+ ++  TK  +     L     ++    + D   +L+ARN+P + +     +
Sbjct: 125 IHVVDELVAGQKPSTKSALAFLSRLTDRKKILFVVGRDDVTSRLSARNLPGVTIRYQDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+ A   R
Sbjct: 185 NTYDVLYSDDVVFSVEALNAFIAR 208


>gi|309789666|ref|ZP_07684247.1| ribosomal protein L4/L1e [Oscillochloris trichoides DG6]
 gi|308228402|gb|EFO82049.1| ribosomal protein L4/L1e [Oscillochloris trichoides DG6]
          Length = 220

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 115/205 (56%), Gaps = 3/205 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E ++ N  GE  G I+++E IF ++P   ++ + +  Q    R+G   ++GR EV+ + 
Sbjct: 1   MEATLYNQAGEQIGSIALNESIFGIEPNVPVMHQYVVMQRANARLGTHNTRGRGEVSGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRAR  S       GGG A GP P      +PKK+R LA+R ALS K  +N
Sbjct: 61  KKLYRQKGTGRARQGSIRAPHRMGGGIAHGPHPRSYRLNMPKKMRRLAVRSALSAKLAAN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN---FQLAARNIPNINLLPV 178
            I  +D L  ++ +TK +V   +A  LS   +I   Q +      +L+A N+P++ +L  
Sbjct: 121 QIRFVDALTLEKPRTKDMVAFLKAHTLSGKTLIVIDQKNAQTGNVRLSANNLPDVQILLA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALE 203
             +NV D+L C  +VL K+A+  +E
Sbjct: 181 HYLNVRDLLTCDTVVLPKAAVAVIE 205


>gi|110004230|emb|CAK98568.1| 50s ribosomal protein l4 [Spiroplasma citri]
          Length = 208

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V +  G     ISV++ I+ ++P Q  +   +  Q    R G  K+K R+EV+  G
Sbjct: 1   MKLQVLDAKGTSVKEISVNDAIWGIEPHQQAMFDAVIAQQAAMRQGTHKTKTRTEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  S    Q++GGG  FGP P       + KKVR LA++ ALS K   
Sbjct: 61  KKPWRQKGTGRARQGSIRAPQWKGGGIVFGPTPEKNYLKHVNKKVRKLAIKSALSLKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +IM+ID     +  TK +V            L+I   + D     ++RNI  +N++   
Sbjct: 121 KNIMIIDQFGIDKPSTKAMVEVLNNLKVNGEKLLIITTEGDEVNFKSSRNIEKVNIITST 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           GIN+YD+L  +KL++++ A++A+E+ +
Sbjct: 181 GINIYDLLNANKLLVTEQAVKAIEEVY 207


>gi|282860811|ref|ZP_06269877.1| ribosomal protein L4/L1e [Streptomyces sp. ACTE]
 gi|282564547|gb|EFB70083.1| ribosomal protein L4/L1e [Streptomyces sp. ACTE]
          Length = 216

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 104/202 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G+  G + +  +IF  K    ++ +V+  Q    R G  K+K R EV   
Sbjct: 1   MSTIDILSPAGDKAGTVELPAEIFDAKTSVPLIHQVVVAQLAAARQGTHKTKRRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GRKPYRQKGTGRARQGSTRAPQFVGGGVVHGPQPRDYSQRTPKKMKAAALRGALSDRARH 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+  +V     TK + T F  +   + L++   + D    L+ARN+P +++L    
Sbjct: 121 SRIHVVTGVVEGGISTKAVKTLFGKISERSNLLLVAERSDEAAWLSARNLPQVHILEPGQ 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N YD++    +V +++A E+ 
Sbjct: 181 LNTYDVIVSDDVVFTQAAFESF 202


>gi|86739296|ref|YP_479696.1| 50S ribosomal protein L4 [Frankia sp. CcI3]
 gi|109893595|sp|Q2JFH5|RL4_FRASC RecName: Full=50S ribosomal protein L4
 gi|86566158|gb|ABD09967.1| LSU ribosomal protein L4P [Frankia sp. CcI3]
          Length = 245

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 102/204 (50%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            ++V   +G + G + +   +F +     ++ +V+  Q    R G   +K R EV   G 
Sbjct: 15  TVAVHAPNGGEGGSVELPGGVFDVPLNIPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGR 74

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +N 
Sbjct: 75  KPYRQKGTGRARQGSLRAPQFTGGGTVHGPTPRRYDQRTPKKMKAAALRGALSDRARNNR 134

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+ +LVS +   TK  VT  R +  +  +++   + D     + RN+  ++LL    +
Sbjct: 135 VHVVSSLVSGETPSTKSAVTALRTIADTRRVLVVASRSDELTWKSLRNVAAVHLLDPGQL 194

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V  + A+ A   R
Sbjct: 195 NTYDVLVSDDVVFIEDALAAFLAR 218


>gi|260579266|ref|ZP_05847150.1| 50S ribosomal protein L4 [Corynebacterium jeikeium ATCC 43734]
 gi|258602618|gb|EEW15911.1| 50S ribosomal protein L4 [Corynebacterium jeikeium ATCC 43734]
          Length = 217

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   DG+  G + +   IF  +    ++ +V+  Q   KR G   +K R +V+  G 
Sbjct: 5   KLDVHTADGKTNGTVELPASIFDAEASVALMHQVVTAQLAAKRQGTHATKTRGQVSGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG   GP P       PKK+++ ALR AL+D+   N 
Sbjct: 65  KPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRVRHNR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V++ LV  +   TK   T    L    ++++   + D     +  N+P ++ L    +
Sbjct: 125 IHVVEELVPGQTPSTKAARTFIERLTDRKSVLVVLTREDVTAWKSVNNLPQVHTLVNDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A+ A 
Sbjct: 185 NTYDVLNADDVVFSVEALNAF 205


>gi|307294975|ref|ZP_07574817.1| ribosomal protein L4/L1e [Sphingobium chlorophenolicum L-1]
 gi|306879449|gb|EFN10667.1| ribosomal protein L4/L1e [Sphingobium chlorophenolicum L-1]
          Length = 207

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/205 (42%), Positives = 126/205 (61%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++++V+ LD +  G + +++ +F ++P+  IL RV+ WQ  ++R     ++ RS+VA TG
Sbjct: 1   MKVNVQTLDAQAAGDLELNDAVFGVEPRTDILHRVVLWQLEKRRAPTRATRERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG G ARH  +    F GGGKA G       H L KKVR+L L+ ALS K  + 
Sbjct: 61  KKFGRQKGGGTARHGDRKAPVFIGGGKAHGARARTFGHDLNKKVRALGLKMALSTKAKNG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DNL   E KTK LV     L+L+ AL IDG  ++ +F  A+ NI  +NLLP  G 
Sbjct: 121 SLIVLDNLDVAEGKTKALVAHLAKLNLNKALFIDGDAVNVSFAKASANIVGVNLLPAVGA 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDILR   LVL+++A+E LE RF
Sbjct: 181 NVYDILRADSLVLTRAAVEKLEARF 205


>gi|330993847|ref|ZP_08317779.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1]
 gi|329759115|gb|EGG75627.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1]
          Length = 204

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  ++ LD    G  S+ ++IFA  P+  ILARV+ WQ  ++R G  K KG  E++ T 
Sbjct: 1   MDYEIKTLDNGSAGTASLPDEIFAATPRPDILARVVHWQLAKRRAGTHKVKGMGEISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    Q+R GG   GPV     + LPKKVR L L  ALS K    
Sbjct: 61  KKPYRQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLIFALSQKAAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D   +   K+  L  + + L    + +I    ++ NF  AARN+P I++LP  G 
Sbjct: 121 KLVVLDA-ATASGKSAELAKKLKVLG-WTSALIVDAAVEENFGRAARNLPKIDILPTIGA 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL    L ++++ +E L++R 
Sbjct: 179 NVYDILNHDVLAITRAGVEGLKERL 203


>gi|160902255|ref|YP_001567836.1| 50S ribosomal protein L4 [Petrotoga mobilis SJ95]
 gi|189029512|sp|A9BHA4|RL4_PETMO RecName: Full=50S ribosomal protein L4
 gi|160359899|gb|ABX31513.1| ribosomal protein L4/L1e [Petrotoga mobilis SJ95]
          Length = 221

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 116/219 (52%), Gaps = 14/219 (6%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+  E  G + + ++IF + P   +L R +  Q   KR G + +K RSEV+  
Sbjct: 1   MSQIDIYNIQNEKVGTLDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     FR GG  FGP P      L KK++ LAL+ ALS ++  
Sbjct: 61  GRKPWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII----DGCQLDRNFQLAARNIPNINLL 176
           N+++V+D +  ++ +TK +        + +  ++       +   NF+L+ARN+P + ++
Sbjct: 121 NNLIVLDEVKFEKPRTKDVKNILSKFGMEDTKVLFLFPYHQEQYENFKLSARNLPKVKVI 180

Query: 177 ----------PVQGINVYDILRCSKLVLSKSAIEALEDR 205
                      V G+NV+D++   K+VL+K  +  +E+ 
Sbjct: 181 IADNPGQNKKNVDGLNVFDLINSEKIVLTKEMVNKIEEV 219


>gi|119468279|ref|ZP_01611405.1| 50S ribosomal protein L4 [Alteromonadales bacterium TW-7]
 gi|119448272|gb|EAW29536.1| 50S ribosomal protein L4 [Alteromonadales bacterium TW-7]
          Length = 201

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++  G     + VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELAIKDASGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG +F   P      + +K+   A++  LS+     
Sbjct: 57  KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK LV + + L+L +  +I   ++D N  L+ARN+  ++   V GI
Sbjct: 117 RLIVVESFGLEAPKTKDLVAKLKELELKDV-LIVTEEVDENLFLSARNLYKVDTRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ LE+  
Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEEAL 200


>gi|319443064|ref|ZP_07992220.1| 50S ribosomal protein L4 [Corynebacterium variabile DSM 44702]
          Length = 216

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 1/203 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L+V   DG   G + +   IF ++P   ++ +V+  Q   KR G   +K R +V   G 
Sbjct: 5   TLNVHTADGSTNGTVELPASIFDVEPSVPLMHQVVVAQLAAKRQGTHATKTRGDVRGGGK 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S       GGG   GP P       PKK+++ ALR AL+D+  +  
Sbjct: 65  KPFRQKGTGRARQGSTRAPHMTGGGTVHGPQPRDYDQRTPKKMKAAALRGALTDRVRNER 124

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  +   TK   +    L     +++   + D     +  N+P ++ L    +
Sbjct: 125 IHLVEELVAGQTPSTKSARSFLGRLTDRKTVLVVLGREDVTAWKSVNNLPAVHALSFDQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N YD+L    +V S  A+ A  +
Sbjct: 185 NTYDVLNADDVVFSVEALNAFIE 207


>gi|315125263|ref|YP_004067266.1| 50S ribosomal protein L4 [Pseudoalteromonas sp. SM9913]
 gi|315013776|gb|ADT67114.1| 50S ribosomal protein L4 [Pseudoalteromonas sp. SM9913]
          Length = 201

 Score =  186 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++  G     + VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELAIKDASGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG +F   P      + +K+   A++  LS+     
Sbjct: 57  KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK LV + + L+L +  +I   ++D N  L+ARN+  ++   V GI
Sbjct: 117 RLIVVESFGLEAPKTKELVAKLKELELKDV-LIVTEEVDENLFLSARNLYKVDTRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ LE+  
Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEEAL 200


>gi|224283710|ref|ZP_03647032.1| 50S ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171]
 gi|313140866|ref|ZP_07803059.1| ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171]
 gi|313133376|gb|EFR50993.1| ribosomal protein L4 [Bifidobacterium bifidum NCIMB 41171]
          Length = 221

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G+  G + V  ++F      ++    ++ +V+  Q    R G   +K R  
Sbjct: 4   VTLNVTDGKGQATGSVEVPAELFGHTADEVQAHVPLIHQVVVAQLAAARQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ ALR+ LSD
Sbjct: 64  VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  ++V+D  V+    TK  +     +  +    +   + + N  L+ RNIP ++ +
Sbjct: 124 RVNAGRVVVVDFGVTDTPSTKAAIAALTPVTENKFTTVVFSRDNVNEWLSVRNIPTVHPI 183

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
               +N YD++    +V +K  +EA 
Sbjct: 184 FADQLNTYDVVTAQYVVFTKEGLEAF 209


>gi|284992873|ref|YP_003411427.1| 50S ribosomal protein L4/L1e [Geodermatophilus obscurus DSM 43160]
 gi|284066118|gb|ADB77056.1| ribosomal protein L4/L1e [Geodermatophilus obscurus DSM 43160]
          Length = 292

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ VR   GE  G +++  ++F       ++ +V+  Q    R G   +K R +V+  G 
Sbjct: 17  QVDVRTPAGETSGSVTLPGELFDASANVSLMHQVVVAQLAAARQGTHATKTRGQVSGGGI 76

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   N 
Sbjct: 77  KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYSQKTPKKMKAAALRGALSDRARENR 136

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+   V     +TK  +    ++  +  +++   + D    ++ RN+P ++LL    +
Sbjct: 137 VHVVSTFVDGDAPRTKAALATLESITRAKRVLVVLDRDDVLNWVSLRNVPQVHLLEAGQL 196

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L   ++V +++A+   
Sbjct: 197 NTYDVLVADEVVFTEAALAEF 217


>gi|88854681|ref|ZP_01129347.1| 50S ribosomal protein L4 [marine actinobacterium PHSC20C1]
 gi|88815842|gb|EAR25698.1| 50S ribosomal protein L4 [marine actinobacterium PHSC20C1]
          Length = 219

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 2/204 (0%)

Query: 1   MIE-LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M   + V +  G+    + +  +IF ++    ++ +V+  Q    R G   +  R EV+ 
Sbjct: 1   MATSIDVLDAKGKKVDSVELPAEIFDVQTNVPLIHQVVVAQRAAARQGTHNTLRRGEVSG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           +G K + QKGTGRAR  S    Q +GGG   GP P       PKK+ + ALR  LSD+  
Sbjct: 61  SGRKPFKQKGTGRARQGSIRAPQMKGGGIVHGPHPRDYSQRTPKKMIAAALRGTLSDRAR 120

Query: 120 SNDIMVIDNLVSK-ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              I VID    + +  TK ++     +  S  +++   + D     + RNI  +++L  
Sbjct: 121 GERIHVIDAFAVEGKPSTKTVLALLNNIAPSKHVLVVLERDDATSIKSIRNIDAVHVLTF 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD++    +V SK A +A 
Sbjct: 181 DQLNAYDVVVSDDIVFSKGAFDAF 204


>gi|323342790|ref|ZP_08083022.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463902|gb|EFY09096.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 209

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/208 (35%), Positives = 114/208 (54%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L + NL+G+    + ++E +F ++P    +   +  Q    R G  K+K R+EV   
Sbjct: 1   MPKLDILNLEGKSLRELELNEAVFGIEPNNQTIFEAVVMQQASLRQGTHKTKNRTEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    ++L +KVR LALR ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYKYSLNRKVRRLALRSALSQKVMD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--IDGCQLDRNFQLAARNIPNINLLPV 178
           +++ V++NL  +  KTK  +    AL L+   +  +   +   N  L+ RN+ N  +L V
Sbjct: 121 SEMSVVENLTVENVKTKEFIAVMDALKLNKKTLFVVSAEENIDNAYLSMRNLSNTMMLDV 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           QG+NVYDI+ C ++V ++ A     +  
Sbjct: 181 QGLNVYDIVNCDQIVFTEKAAIEAGEVL 208


>gi|85709056|ref|ZP_01040122.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1]
 gi|85690590|gb|EAQ30593.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1]
          Length = 207

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V+ +DG+  G I +S+D+F ++P+  IL RV+ WQ   +R     ++ RS+VA TG
Sbjct: 1   MKVKVQKIDGKASGDIELSDDVFGVEPRADILHRVVTWQLENRRATARPTRERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH  +    F GGGKA G        +L KK+R+L L+ ALS K    
Sbjct: 61  KKFGAQKGSGGARHGDRGAPIFIGGGKAHGARKRDFNQSLNKKIRALGLKMALSTKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQG 180
            ++V+D+L  KE KT+ L   F     +  +++ DG  ++  F+ AA N+  +N+LP  G
Sbjct: 121 -LVVLDSLELKEAKTQALKGHFDKHGFAGKVLVIDGESVNDGFKQAAGNLKGVNVLPAAG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL    L+L+K A+E LE RF
Sbjct: 180 ANVYDILNHDTLILTKDAVEKLEARF 205


>gi|222099968|ref|YP_002534536.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359]
 gi|254803761|sp|B9K887|RL4_THENN RecName: Full=50S ribosomal protein L4
 gi|221572358|gb|ACM23170.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359]
          Length = 235

 Score =  185 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 19/225 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE  G + +S+ +F + P   ++ R +  Q   +R G + +K R EV+  
Sbjct: 1   MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRARH S     +R GG A GP P      L KK++ LALR ALS K+  
Sbjct: 61  GRKPWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR----NFQLAARNIPNINLL 176
           N ++V+++L  +  KTK L    + LDL++   +           N +L+ +N+PN+ ++
Sbjct: 121 NKLLVLEDLKLERPKTKSLKEILQNLDLADKKALIVLPWKEEGYVNVKLSGKNLPNVKVI 180

Query: 177 PV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206
                             G+NV+D+L+   L+L++  +  +E+  
Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLILTRDMVAKIEEVL 225


>gi|258591317|emb|CBE67616.1| 50S ribosomal subunit protein L4 [NC10 bacterium 'Dutch sediment']
          Length = 211

 Score =  185 bits (469), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/210 (32%), Positives = 114/210 (54%), Gaps = 4/210 (1%)

Query: 2   IELSV--RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           + + V   + +G     +++ E +F       ++  V+R Q   +R G + ++ RSEV  
Sbjct: 1   MSVIVQALDTNGVKTTDVTLDEMVFGAVGPSHLMHDVVRMQLANRRQGTASTRRRSEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K + QKGTGRAR  ++    +RGGG  FGP P    + +P++VR+ ALR ALS+K  
Sbjct: 61  GGKKPWKQKGTGRARSGTRRSPLWRGGGTVFGPQPRSYAYEIPRQVRASALRTALSEKVR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLP 177
           +   +V+D L   E  TK        L +    +    Q+  D    ++ RN+P++ L+P
Sbjct: 121 AGQFVVVDGLSLAEPSTKAFKALLTRLGVQGRALFVTDQVHQDDAVSMSCRNLPDVTLVP 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207
             G+NVYDILR   L+++K A+ A+E+ +K
Sbjct: 181 TAGLNVYDILRHDTLIMTKGAVSAVEEAWK 210


>gi|189424411|ref|YP_001951588.1| 50S ribosomal protein L4 [Geobacter lovleyi SZ]
 gi|226730669|sp|B3E7T6|RL4_GEOLS RecName: Full=50S ribosomal protein L4
 gi|189420670|gb|ACD95068.1| ribosomal protein L4/L1e [Geobacter lovleyi SZ]
          Length = 206

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++ N++ E  G +++ E IFA + ++ ++ + L+ Q   +R G  K+K R+EV+  
Sbjct: 1   MPTIALYNMNREKIGEVALDEQIFAAEVKEPLIHQALKVQLANRRAGTVKTKTRAEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR       Q+ GGG  FGP P      + KK R  ALR  LS +  S
Sbjct: 61  GKKPFKQKGTGNARQGCSRAPQYPGGGTVFGPQPKTYNLGINKKARKAALRSLLSMQLKS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D +   +  TK      +  D     +I   +   N  L++RN+P + LL   G
Sbjct: 121 EKITVLDQIEFAKISTKDFAGFMKKFD-LERSLIITEEPSTNLALSSRNVPYVKLLKADG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NV+D+L+   +V+++ A+  +E   +
Sbjct: 180 LNVFDVLKYQNIVMTEGAVRLVEGALQ 206


>gi|296141114|ref|YP_003648357.1| ribosomal protein L4/L1e [Tsukamurella paurometabola DSM 20162]
 gi|296029248|gb|ADG80018.1| ribosomal protein L4/L1e [Tsukamurella paurometabola DSM 20162]
          Length = 217

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 97/202 (48%), Gaps = 3/202 (1%)

Query: 1   MIEL--SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58
           M +L   V+  DG+  G + +   IF ++P   ++ +V+  Q    R G   +K R EV 
Sbjct: 1   MSKLTLDVKTADGKTDGTVELPAAIFDVEPNISLMHQVVIAQLAAARAGTHSTKTRGEVR 60

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
             G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR AL+++ 
Sbjct: 61  GGGRKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALTERV 120

Query: 119 CSNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             + I  V + +  +E  TK        L      ++   + D   Q + +N+PN   + 
Sbjct: 121 REDRIHVVTELVAGQEASTKTARLFLAQLSERKKFLVVVGREDLTAQRSVQNLPNAKWIY 180

Query: 178 VQGINVYDILRCSKLVLSKSAI 199
              +N YD+L    LV S+ A+
Sbjct: 181 PDQLNTYDVLDADDLVFSREAL 202


>gi|317153957|ref|YP_004122005.1| 50S ribosomal protein L4/L1e [Desulfovibrio aespoeensis Aspo-2]
 gi|316944208|gb|ADU63259.1| ribosomal protein L4/L1e [Desulfovibrio aespoeensis Aspo-2]
          Length = 206

 Score =  185 bits (469), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L V + + +  G I ++ ++F ++ Q  IL  V+R Q   KR G   +K R   +  
Sbjct: 1   MAKLQVVDQNNQKVGDIELAPEVFEVEIQPEILNLVVRAQRAAKRSGTHATKTRGMKSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P      + KK+R LAL+ ALS +   
Sbjct: 61  GRKPWRQKGTGRARAGSSRSPLWRGGAVLFGPQPRDYSFKVNKKIRKLALQMALSSRVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V+ ++   E KTK        L      +I     D N  L+ARN+P I ++    
Sbjct: 121 DKVTVVKSIDLAEIKTKAFAAVVEKLG-LGKTLIVLKDADLNLALSARNVPGIKVIEADK 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NVYD+L   +LV+ ++A + +++R K
Sbjct: 180 LNVYDVLLYPELVMFEAAAQDVQERLK 206


>gi|59802159|ref|YP_208871.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA 1090]
 gi|194099924|ref|YP_002003062.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae NCCP11945]
 gi|239997927|ref|ZP_04717851.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02]
 gi|240015095|ref|ZP_04722008.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI18]
 gi|240017544|ref|ZP_04724084.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA6140]
 gi|240081687|ref|ZP_04726230.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19]
 gi|240113965|ref|ZP_04728455.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11]
 gi|240116699|ref|ZP_04730761.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18]
 gi|240118921|ref|ZP_04732983.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1]
 gi|240122167|ref|ZP_04735129.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID24-1]
 gi|240124459|ref|ZP_04737415.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332]
 gi|240124672|ref|ZP_04737558.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679]
 gi|240129135|ref|ZP_04741796.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035]
 gi|254494720|ref|ZP_05107891.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 1291]
 gi|268593777|ref|ZP_06127944.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02]
 gi|268597784|ref|ZP_06131951.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19]
 gi|268600029|ref|ZP_06134196.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11]
 gi|268602367|ref|ZP_06136534.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18]
 gi|268604630|ref|ZP_06138797.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1]
 gi|268683088|ref|ZP_06149950.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332]
 gi|268683246|ref|ZP_06150108.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679]
 gi|268687518|ref|ZP_06154380.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035]
 gi|293398201|ref|ZP_06642406.1| 50S ribosomal protein L4/L1 [Neisseria gonorrhoeae F62]
 gi|75432357|sp|Q5F5S8|RL4_NEIG1 RecName: Full=50S ribosomal protein L4
 gi|226730698|sp|B4RQX9|RL4_NEIG2 RecName: Full=50S ribosomal protein L4
 gi|59719054|gb|AAW90459.1| putative 50S ribosomal protein L4 [Neisseria gonorrhoeae FA 1090]
 gi|193935214|gb|ACF31038.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae NCCP11945]
 gi|226513760|gb|EEH63105.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 1291]
 gi|268547166|gb|EEZ42584.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae 35/02]
 gi|268551572|gb|EEZ46591.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae FA19]
 gi|268584160|gb|EEZ48836.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae MS11]
 gi|268586498|gb|EEZ51174.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID18]
 gi|268588761|gb|EEZ53437.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID1]
 gi|268623372|gb|EEZ55772.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae PID332]
 gi|268623530|gb|EEZ55930.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-92-679]
 gi|268627802|gb|EEZ60202.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae SK-93-1035]
 gi|291611464|gb|EFF40534.1| 50S ribosomal protein L4/L1 [Neisseria gonorrhoeae F62]
 gi|317165377|gb|ADV08918.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 206

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G +SVS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VI+ L ++  KTK    + + L L   L +   +LD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFVIEALTAETPKTKVFAEQVKNLALEQVLFV-TKRLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K++++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205


>gi|326334544|ref|ZP_08200755.1| 50S ribosomal protein L4 [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693313|gb|EGD35241.1| 50S ribosomal protein L4 [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 209

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ G++ G  +++SE +F ++P    +   ++     +R G  KSK R+EVA +
Sbjct: 1   MEVAVLNIQGKETGRKVTLSEAVFGIEPNNHTIYLDIKQYLANQRQGTHKSKERNEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG+ FGP P      L KKV+ LA R  LS K   
Sbjct: 61  TRKIKKQKGTGTARAGSVKSPVFVGGGRVFGPRPKDYTQKLNKKVKRLARRSVLSQKAQQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++   +  KTK       A        +      ++N  L++RNIP++N +   
Sbjct: 121 GAIIVLEDFNFETPKTKDFTQILAALGIQDKKSLFVLADTNKNVYLSSRNIPSVNTVTAY 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YD+   + +VL +SA+E ++   
Sbjct: 181 ELNTYDVANATNVVLLESAVEVIQSNL 207


>gi|300779844|ref|ZP_07089700.1| ribosomal protein L4/L1 family protein [Corynebacterium genitalium
           ATCC 33030]
 gi|300533954|gb|EFK55013.1| ribosomal protein L4/L1 family protein [Corynebacterium genitalium
           ATCC 33030]
          Length = 220

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V   DG  KG + +  ++F  +    ++ +V+  Q    R G  K+K R EV   G 
Sbjct: 5   TLDVHTADGATKGTVELPAELFDREASVPLMHQVVNAQLAAARQGTHKTKTRGEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GPVP       PKK+   AL  AL+++  ++ 
Sbjct: 65  KPFRQKGTGRARQGSIRAPHYTGGGTVHGPVPRDYSQRTPKKMIKAALAGALTNRAQNDR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V++ LV  +   TK        L    ++++   + D N +L+ARN+P + +L    +
Sbjct: 125 IHVVEELVPGQTPSTKSARAFVERLTDRKSVLLVIGREDVNSRLSARNLPGVTILEPGQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+     R
Sbjct: 185 NTYDVLNADDVVFSVEALHDFVGR 208


>gi|255324737|ref|ZP_05365851.1| ribosomal protein L4/L1 family protein [Corynebacterium
           tuberculostearicum SK141]
 gi|311740076|ref|ZP_07713910.1| ribosomal protein L4/L1 family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255298212|gb|EET77515.1| ribosomal protein L4/L1 family protein [Corynebacterium
           tuberculostearicum SK141]
 gi|311305149|gb|EFQ81218.1| ribosomal protein L4/L1 family protein [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 217

 Score =  184 bits (468), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   +G+  G + +  +IF  +    ++ +V+  Q    R G   +K R +V   G 
Sbjct: 5   KLDVHTSEGKTNGSVDLPAEIFDTEASIALMHQVVNAQLAAARQGTHATKTRGDVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GP P       PKK+   AL  ALSD+  +  
Sbjct: 65  KPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRDYAQRTPKKMIKAALFGALSDRARNER 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI+ LV  ++  TK       +L     +++   + D N + +A N+PN+ +L    +
Sbjct: 125 IHVIEELVPGQKPSTKSAKAFLESLTERKNVLLVIGREDINARRSANNLPNVQILDAGQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+    +R
Sbjct: 185 NTYDVLYSDDVVFSVEALHTFINR 208


>gi|227505215|ref|ZP_03935264.1| 50S ribosomal protein L4 [Corynebacterium striatum ATCC 6940]
 gi|227198189|gb|EEI78237.1| 50S ribosomal protein L4 [Corynebacterium striatum ATCC 6940]
          Length = 220

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V+  +G+  G + +  +IF  +    ++ +V+  Q    R G  K+K R EV   G 
Sbjct: 5   KLDVQTAEGKTNGSVELPAEIFDTEASIALMHQVVNAQLAAARQGTHKAKTRGEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG + GPVP       PKK+   AL  ALSD+  +  
Sbjct: 65  KPFRQKGTGRARQGSIRAPHYTGGGISHGPVPRDYSQRTPKKMIKAALFGALSDRARNER 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI+ LV  +   TK        L     +++   + D N + +A N+PN+ +L    +
Sbjct: 125 IHVIEELVPGQTPSTKAAKAFIERLTERKNVLLVVGREDINARRSANNLPNVQILDAGQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+     R
Sbjct: 185 NTYDVLYSDDVVFSVEALHTFVAR 208


>gi|226365596|ref|YP_002783379.1| 50S ribosomal protein L4 [Rhodococcus opacus B4]
 gi|226244086|dbj|BAH54434.1| 50S ribosomal protein L4 [Rhodococcus opacus B4]
          Length = 229

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V+   G+  G + +  +IF       +L +V+  Q    R G   +K R EV   G 
Sbjct: 12  TLDVKVAGGKTNGTVELPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGK 71

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 72  KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 131

Query: 123 IMV-IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V  + +  +   TK   T    +     +++   + D     + +N+  ++ +    +
Sbjct: 132 IHVITELVAGQTPSTKSARTFLGEISDRKKVLLVVGRADIAAWKSVQNLEGVHPIAPDQL 191

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A+ A 
Sbjct: 192 NTYDVLNSDDVVFSVEALNAF 212


>gi|298243967|ref|ZP_06967774.1| ribosomal protein L4/L1e [Ktedonobacter racemifer DSM 44963]
 gi|297557021|gb|EFH90885.1| ribosomal protein L4/L1e [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M   +V N+ GE    + +SE +F + P   +L +V+  Q   +R G + +K RSEV+  
Sbjct: 1   MPSTTVYNMAGEAVEQLELSEQVFGVTPNMAVLHQVVTAQLVNRRQGNASTKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K Y QKGTGRAR  S    QFRGGG  FGP P    H +PKK+R LA+R  LSDK  +
Sbjct: 61  NKKPYRQKGTGRARQGSTRAPQFRGGGTVFGPKPHPYHHDVPKKMRRLAIRSVLSDKVAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             +++++ L  +  +TK ++   +         +++   + D N  L+ RNIP+  +  V
Sbjct: 121 QSLIIVNKLEMETPRTKDMLELLKKLPSSEGKKVLMMLPKRDENVVLSTRNIPSAKVQHV 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             INV ++L+   +V++   +  +E  F
Sbjct: 181 SSINVVELLKHDYIVMTPKTVRWIELVF 208


>gi|194334860|ref|YP_002016720.1| 50S ribosomal protein L4 [Prosthecochloris aestuarii DSM 271]
 gi|226730706|sp|B4S5M6|RL4_PROA2 RecName: Full=50S ribosomal protein L4
 gi|194312678|gb|ACF47073.1| ribosomal protein L4/L1e [Prosthecochloris aestuarii DSM 271]
          Length = 208

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 101/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N  G + G  IS+ + +FA K  +  +   ++     KR G  K K RSEV   
Sbjct: 1   MELKVINTAGAETGEVISLDDKVFAAKVSEHAVYLDVKSLLANKRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  S       GGG  FGP P      + +K++ LA R ALS K   
Sbjct: 61  GKKPYRQKGTGHARQGSSRSGLMSGGGSIFGPQPHGYDLKVNRKIKRLARRSALSSKAGE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+VI++   ++ KT+      + L       ++   + +     + RNIP +N+    
Sbjct: 121 GRIIVIEDFTFEQIKTRQFADILKNLGLDQKKTLVLLPEHNEIINRSGRNIPVLNIRVAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL C  +V+ K+A++ +E+  
Sbjct: 181 QASTYDILDCQTVVMQKAAVKKIEETL 207


>gi|121997648|ref|YP_001002435.1| 50S ribosomal protein L4 [Halorhodospira halophila SL1]
 gi|166234674|sp|A1WVC1|RL4_HALHL RecName: Full=50S ribosomal protein L4
 gi|121589053|gb|ABM61633.1| LSU ribosomal protein L4P [Halorhodospira halophila SL1]
          Length = 205

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  GE  G + VS+  F    ++ ++ +V+       R G    K RSEVA  G
Sbjct: 1   MELKLSNEKGEAAGQLEVSDQAFDAPFRESLVHQVVTAHLAGARAGTKAQKTRSEVAGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTG AR  +     +RGGG+ F   P      + +K+   ALR  LS+    +
Sbjct: 61  KKPWRQKGTGNARAGTIRSPLWRGGGQTFAAKPRDFSQKVNRKMYRGALRSILSELARQD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+  L     KT+ L  R   L +    +I   ++D N +LAARN+P + ++   G+
Sbjct: 121 RLVVVKQLTVDAPKTRELKARLEGLGVRE-GLIVVDEIDANLELAARNLPRLGVVDAAGV 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   ++V+++SAI  +E+  
Sbjct: 180 DPASLVGAERVVITESAIRRVEEWL 204


>gi|225076396|ref|ZP_03719595.1| hypothetical protein NEIFLAOT_01441 [Neisseria flavescens
           NRL30031/H210]
 gi|241759656|ref|ZP_04757757.1| ribosomal protein, L4/L1 family [Neisseria flavescens SK114]
 gi|261380560|ref|ZP_05985133.1| ribosomal protein L4/L1 family protein [Neisseria subflava NJ9703]
 gi|319639550|ref|ZP_07994297.1| 50S ribosomal protein L4 [Neisseria mucosa C102]
 gi|224952244|gb|EEG33453.1| hypothetical protein NEIFLAOT_01441 [Neisseria flavescens
           NRL30031/H210]
 gi|241320028|gb|EER56409.1| ribosomal protein, L4/L1 family [Neisseria flavescens SK114]
 gi|284796528|gb|EFC51875.1| ribosomal protein L4/L1 family protein [Neisseria subflava NJ9703]
 gi|317399121|gb|EFV79795.1| 50S ribosomal protein L4 [Neisseria mucosa C102]
          Length = 206

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G ++VS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLAVSDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVNHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  I+ L ++  KTK    + + L L   L +   QLD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K+V++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205


>gi|224827018|ref|ZP_03700115.1| ribosomal protein L4/L1e [Lutiella nitroferrum 2002]
 gi|224600684|gb|EEG06870.1| ribosomal protein L4/L1e [Lutiella nitroferrum 2002]
          Length = 206

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N+ G+    +  SE +F  +  + ++ +V+       R      K R+EV ++ 
Sbjct: 1   MELKVINVQGQAVEGLQASEGLFGREYNEALVHQVVTAFLANARSANRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPIWRGGGRTFPNSPDENFSHKVNRKMFRAGMAAILSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+DN   +  KTK  V   +++ +   L I   ++D N  L++RN+PN+ ++  Q 
Sbjct: 121 ERLIVVDNFAVETPKTKEFVGLVKSMGIEQGLFI-TNEMDENLYLSSRNLPNVLVIETQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K+V+++ A++ LE+++
Sbjct: 180 VDPYSLLRFKKIVITRDAVKQLEEQW 205


>gi|197117324|ref|YP_002137751.1| 50S ribosomal protein L4 [Geobacter bemidjiensis Bem]
 gi|253701921|ref|YP_003023110.1| 50S ribosomal protein L4 [Geobacter sp. M21]
 gi|226730668|sp|B5EFQ1|RL4_GEOBB RecName: Full=50S ribosomal protein L4
 gi|259491560|sp|C6E4Q6|RL4_GEOSM RecName: Full=50S ribosomal protein L4
 gi|197086684|gb|ACH37955.1| ribosomal protein L4 [Geobacter bemidjiensis Bem]
 gi|251776771|gb|ACT19352.1| ribosomal protein L4/L1e [Geobacter sp. M21]
          Length = 207

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L V ++     G I + + +F    ++ ++   ++ Q   +R G    K R+ VA +
Sbjct: 1   MAKLDVFDIKKAKVGEIELDDAVFNDDVREYLIHEAVKIQLANRRQGTVAVKNRALVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG+AR   +   Q+ GGG AFGP P     ++ KK R  ALR ALS  +  
Sbjct: 61  GKKPFKQKGTGQARQGCRRAPQYPGGGVAFGPQPKDYNLSMNKKARKAALRSALSMLYKK 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+++L     KTK  V    A +  +  ++         +L+ARN+ ++ +L  +G
Sbjct: 121 DAITVVNSLELPSIKTKAFVEVLTAFN-LDKTLVITDTATPTLELSARNVKHVKVLGPEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +N++DI++   +V +++A+  +E   +
Sbjct: 180 LNIFDIMKYQSVVFTEAAVRRVEGALQ 206


>gi|320160415|ref|YP_004173639.1| 50S ribosomal protein L4 [Anaerolinea thermophila UNI-1]
 gi|319994268|dbj|BAJ63039.1| 50S ribosomal protein L4 [Anaerolinea thermophila UNI-1]
          Length = 208

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           + + V N+ G+    + + E IF       ++ +    Q    R+G   +K R+EV+  G
Sbjct: 1   MLVDVVNMQGQKVSSVELPESIFEAPIYIDLMHQAYVRQMANARLGTHDTKTRNEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +  G K   P P   V  +P+K+R  ALR ALS K   N
Sbjct: 61  RKPWRQKGTGRARQGSTRSPVWAKGAKVHTPHPRSYVQLMPRKMRRAALRSALSVKAAEN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQ 179
            I+V+D L   E KT+++      L    + ++   + +       + RN+P+  +L   
Sbjct: 121 AIVVVDQLTLPEAKTRHMAQALNTLVGDASALVLIPEKEAYEGVIRSTRNLPDAKILLAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N+ D+L   K+V+  +A++ +    
Sbjct: 181 YLNIRDLLMFDKVVMPLAALDVISANL 207


>gi|296282583|ref|ZP_06860581.1| 50S ribosomal protein L4 [Citromicrobium bathyomarinum JL354]
          Length = 207

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 125/206 (60%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++++V+ +DG   G I +++ +F ++P+  IL RV+ WQ  ++R     ++ RS+VA TG
Sbjct: 1   MKIAVQKIDGGKAGEIELNDAVFGVEPRADILHRVVTWQLEKRRGTARPTRERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG+G ARH  +    F GGGKA G        +L KK+RSL LR ALS K    
Sbjct: 61  KKFGRQKGSGGARHGDRGAPIFIGGGKAHGARKRDFDPSLNKKIRSLGLRMALSSKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQG 180
            ++++D+L  K+ KTK L   F     +  +++ DG  ++  F++AA N+P +N++P  G
Sbjct: 121 -LVIVDSLELKDAKTKALKGHFEKAGFNGKVLVIDGESVNDGFKMAAGNLPGVNVIPAVG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL+   LVL+K A+E LE RF
Sbjct: 180 ANVYDILKHDTLVLTKDAVEKLEARF 205


>gi|25027079|ref|NP_737133.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314]
 gi|259506792|ref|ZP_05749692.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314]
 gi|46577270|sp|Q8FS79|RL4_COREF RecName: Full=50S ribosomal protein L4
 gi|23492359|dbj|BAC17333.1| putative 50S ribosomal protein L4 [Corynebacterium efficiens
           YS-314]
 gi|259165663|gb|EEW50217.1| 50S ribosomal protein L4 [Corynebacterium efficiens YS-314]
          Length = 218

 Score =  184 bits (468), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/204 (31%), Positives = 97/204 (47%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V+  +G   G + +  +IF  +    +L +V+  Q    R G   +K R+EV   G 
Sbjct: 5   TLDVQTAEGTTNGSVDLPAEIFDREVSVALLHQVVNAQLAAARQGTHSTKTRAEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG + GP P       PKK+   AL  ALSD+  +  
Sbjct: 65  KPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRDYAQRTPKKMIKAALYGALSDRARNER 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI  LV  +   TK        L    ++++   + D N Q +A N+P +++L    +
Sbjct: 125 IHVISELVPGQAPSTKSAKAFIERLTERKSVLLVIGREDINAQKSANNLPGVHILAADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+    +R
Sbjct: 185 NTYDVLNSDDIVFSVEALHTFINR 208


>gi|227876214|ref|ZP_03994330.1| ribosomal protein L4 [Mobiluncus mulieris ATCC 35243]
 gi|269976880|ref|ZP_06183854.1| ribosomal protein L4/L1 family [Mobiluncus mulieris 28-1]
 gi|306819490|ref|ZP_07453197.1| ribosomal protein L4/L1 family protein [Mobiluncus mulieris ATCC
           35239]
 gi|307701215|ref|ZP_07638237.1| 50S ribosomal protein L4 [Mobiluncus mulieris FB024-16]
 gi|227843175|gb|EEJ53368.1| ribosomal protein L4 [Mobiluncus mulieris ATCC 35243]
 gi|269934711|gb|EEZ91271.1| ribosomal protein L4/L1 family [Mobiluncus mulieris 28-1]
 gi|304647782|gb|EFM45100.1| ribosomal protein L4/L1 family protein [Mobiluncus mulieris ATCC
           35239]
 gi|307613609|gb|EFN92856.1| 50S ribosomal protein L4 [Mobiluncus mulieris FB024-16]
          Length = 214

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 97/201 (48%), Gaps = 2/201 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V +  G+  G + +  ++F L+    +L +V+  Q    R G   +K R +V+  G K
Sbjct: 7   IDVLDGAGKKTGTVELPGEVFDLELNVPLLHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +N +
Sbjct: 67  PYRQKGTGRARQGSIRAPQFTGGGIVHGPQPRDYTQKTPKKMKAAALRQALSDRARANRV 126

Query: 124 MV-IDNLVSKECKTKYLVTRFRALDLSNALIID-GCQLDRNFQLAARNIPNINLLPVQGI 181
            V  D  V     TK      +        +I    Q+D    L+  N+   ++L V  +
Sbjct: 127 HVLSDFGVKDAPSTKAAKAALQNAVADRRALIVLTPQVDDVVALSVNNLAEHHVLFVGEL 186

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S SA+++ 
Sbjct: 187 NTYDVLANDDVVFSASALDSF 207


>gi|225351044|ref|ZP_03742067.1| hypothetical protein BIFPSEUDO_02626 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158500|gb|EEG71742.1| hypothetical protein BIFPSEUDO_02626 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 221

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G   G +    +IF      ++ +  ++ +V+  Q    R G   +K R  
Sbjct: 4   VTLNVTDNQGNAAGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQRAAARQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ AL++ LSD
Sbjct: 64  VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  + V+D  VS+   TK  V     +  +    +   + + N  L+ RNIP ++ +
Sbjct: 124 RANAGRVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
               +N YD++    +V SK   +A 
Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209


>gi|85858147|ref|YP_460349.1| 50S ribosomal protein L4 [Syntrophus aciditrophicus SB]
 gi|109893644|sp|Q2LQA0|RL4_SYNAS RecName: Full=50S ribosomal protein L4
 gi|85721238|gb|ABC76181.1| LSU ribosomal protein L4 [Syntrophus aciditrophicus SB]
          Length = 217

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   V +++      I +++ +F  +    ++  V+R Q   +R G + +KGRS+V+  
Sbjct: 11  MLVAEVFDINKNKVSEIELNDAVFGAEVNDAVIYDVVRMQMASRRFGTAATKGRSDVSGG 70

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     +RGGG  FGPVP    + +PKKVR  ALR  LS K+  
Sbjct: 71  GKKPWRQKGTGRARSGTSRSPIWRGGGIVFGPVPRDYKYNVPKKVRKNALRSVLSLKYQG 130

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+ +    E KTK               +    + +   + ++RNI  I ++  +G
Sbjct: 131 QKLVVLKDFPLDEIKTKKFKEVVDRFG-LKKALFVTEERNEFLEKSSRNIAGIKMVRSEG 189

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NVYD+L    LV+ + A++ LE   K
Sbjct: 190 LNVYDVLNHEHLVIIEPAVKKLEGALK 216


>gi|306835220|ref|ZP_07468254.1| ribosomal protein L4/L1 family protein [Corynebacterium accolens
           ATCC 49726]
 gi|304568900|gb|EFM44431.1| ribosomal protein L4/L1 family protein [Corynebacterium accolens
           ATCC 49726]
          Length = 217

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   +G+  G + +  +IF  +    ++ +V+  Q    R G   +K R +V   G 
Sbjct: 5   KLDVHTSEGKTNGSVDLPAEIFDTEASVALMHQVVNAQLAAARQGTHATKTRGDVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GP P       PKK+   AL  ALSD+  +  
Sbjct: 65  KPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRSYAQRTPKKMIKAALFGALSDRARNER 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI+ LV  ++  TK       +L   + +++   + D N + +A N+PN+ +L    +
Sbjct: 125 IHVIEELVPGQKPSTKAAKAFLESLTERDNVLLVIGREDINARRSANNLPNVQILDAGQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+     R
Sbjct: 185 NTYDVLYSDDVVFSVEALHTFITR 208


>gi|227502655|ref|ZP_03932704.1| 50S ribosomal protein L4 [Corynebacterium accolens ATCC 49725]
 gi|227076385|gb|EEI14348.1| 50S ribosomal protein L4 [Corynebacterium accolens ATCC 49725]
          Length = 217

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   +G+  G + +  +IF  +    ++ +V+  Q    R G   +K R +V   G 
Sbjct: 5   KLDVHTSEGKTNGSVDLPAEIFDTEASVALMHQVVNAQLAAARQGTHATKTRGDVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GP P       PKK+   AL  ALSD+  +  
Sbjct: 65  KPFRQKGTGRARQGSIRAPHYTGGGTVHGPQPRSYAQRTPKKMIKAALFGALSDRARNER 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI+ LV  ++  TK       +L   + +++   + D N + +A N+PN+ +L    +
Sbjct: 125 IHVIEELVPGQKPSTKAAKAFLESLTERDNVLLVIGREDINARRSANNLPNVQILDAGQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+L    +V S  A+     R
Sbjct: 185 NTYDVLYSDDVVFSVEALHTFITR 208


>gi|119502925|ref|ZP_01625010.1| regulatory protein, LuxR [marine gamma proteobacterium HTCC2080]
 gi|119461271|gb|EAW42361.1| regulatory protein, LuxR [marine gamma proteobacterium HTCC2080]
          Length = 205

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++        G +SVSE  FA +  + ++ +V+       R G    K RSEVA  G
Sbjct: 1   MELNIVKPGNAAGGTVSVSEATFAREYNEALVHQVVTAYLAGGRQGTRAQKTRSEVAGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P    H + KK+   A+R  LS+   ++
Sbjct: 61  KKPWRQKGTGRARAGTIRSPIWRSGGTTFAAKPQDHSHKVNKKMYRAAMRSILSELARTD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   ++ KTK L+ + +  DL N  +I G  +D+N  LAARN+  + +  V   
Sbjct: 121 RLVVVESFDMEQPKTKLLLQQLKGFDLENV-LIVGNVVDQNLYLAARNLHKVEVCDVDAA 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++  E+  
Sbjct: 180 DPVSLIAFDKVMVTVDAVKKFEEAL 204


>gi|39938687|ref|NP_950453.1| 50S ribosomal protein L4 [Onion yellows phytoplasma OY-M]
 gi|46577157|sp|P61067|RL4_ONYPE RecName: Full=50S ribosomal protein L4
 gi|39721796|dbj|BAD04286.1| ribosomal protein L4 [Onion yellows phytoplasma OY-M]
          Length = 207

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 112/207 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G+      ++  +F +KP Q +L  V+  Q    R G   +K R+ VA  
Sbjct: 1   MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +RGGG  FGP P      + +KVRSLAL+ ALS +  +
Sbjct: 61  GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRDYSVKVNQKVRSLALKSALSLQAKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+DN+     KTK      + L++++  +I   Q+     LA+RN+  I L     
Sbjct: 121 NQLVVVDNINLATHKTKDFQQMLQKLNITSKSLIVVTQMTEQLALASRNLSYITLETASH 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +VY IL C +LVL+ +A+   E+  K
Sbjct: 181 ASVYQILNCKQLVLTAAAVNYFEEVLK 207


>gi|187251821|ref|YP_001876303.1| 50S ribosomal protein L4/L1e [Elusimicrobium minutum Pei191]
 gi|186971981|gb|ACC98966.1| Ribosomal protein L4/L1e [Elusimicrobium minutum Pei191]
          Length = 211

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V N+ G+++G  ++ E +F+ KP    L  V+      +R G +  K R+EV+ TG
Sbjct: 1   METKVFNIQGKEEGTTALPEVLFSAKPNPTFLHEVVTAFLANQRRGTADVKTRAEVSGTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRARH S     +R GG AFGP P      LP + R  AL  ALS K+   
Sbjct: 61  KKPWKQKGTGRARHGSMRSPIWRHGGVAFGPTPRSFRQYLPAQKRRAALIQALSAKYAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQG 180
           +++V ++   KE KTK L T  +A++     ++   +  D    L+ARNI  ++L+P   
Sbjct: 121 NVIVFNDGGIKESKTKVLATALKAMEAGRKPLVLTTEKTDNKVFLSARNIAGLSLIPASD 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N Y +L  SK++++K A+E L+  F
Sbjct: 181 VNAYVVLNSSKIIITKDALETLKSTF 206


>gi|145219062|ref|YP_001129771.1| 50S ribosomal protein L4 [Prosthecochloris vibrioformis DSM 265]
 gi|189042879|sp|A4SCR0|RL4_PROVI RecName: Full=50S ribosomal protein L4
 gi|145205226|gb|ABP36269.1| LSU ribosomal protein L4P [Chlorobium phaeovibrioides DSM 265]
          Length = 208

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V    G + G + ++ +DIF  +  +  +   ++     +R G  KSK R+EV   
Sbjct: 1   MELKVLTTAGTESGEVVTLRDDIFGAEVSEHAVYLDVKSILANRRQGTHKSKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  S       GGG  FGP P      + KKV++LA R A S K   
Sbjct: 61  GRKPYRQKGTGNARQGSTRSPLMVGGGTIFGPTPHGYDQKVNKKVKALARRSAFSSKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++    E KTK      + L       ++   + +     + +NI  +N++  +
Sbjct: 121 GRILVVEDFKLDEIKTKPFAAILKNLGLDEKKTLMLTPEYNVIITRSGKNIQTVNIMSAE 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL    ++  K+A++ +E+  
Sbjct: 181 KASTYDILNSHTVLFQKAALKKIEETL 207


>gi|237510710|gb|ACQ99342.1| ribosomal protein L4 [Turicella otitidis]
          Length = 217

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 103/204 (50%), Gaps = 1/204 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   DG   G + +  +IF  +    +  +V+  Q    R G   +K R EV   G 
Sbjct: 5   KLDVHTADGNTNGQVELPSEIFEREASIELTHQVVVAQLAAARQGTHSTKTRGEVRGGGK 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK++  AL  ALS++  ++ 
Sbjct: 65  KPYRQKGTGRARQGSIRAPQFTGGGIVHGPKPRDYSQRTPKKMKRAALHGALSNRAANDR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V++ LV   +  TK   +    L     +++     D N + +A N+P++++L    +
Sbjct: 125 IHVVEELVPGTKPSTKAARSFLERLTGRKNVLLVVQAEDLNARRSANNLPDVHILVPSQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+++   +V SK+A+EA  DR
Sbjct: 185 NTYDVIKSDDVVFSKAALEAFIDR 208


>gi|184155990|ref|YP_001844330.1| 50S ribosomal protein L4 [Lactobacillus fermentum IFO 3956]
 gi|227515488|ref|ZP_03945537.1| ribosomal protein L4 [Lactobacillus fermentum ATCC 14931]
 gi|260662753|ref|ZP_05863647.1| 50S ribosomal protein L4/L1 [Lactobacillus fermentum 28-3-CHN]
 gi|226730678|sp|B2GDW8|RL4_LACF3 RecName: Full=50S ribosomal protein L4
 gi|183227334|dbj|BAG27850.1| 50S ribosomal protein L4 [Lactobacillus fermentum IFO 3956]
 gi|227086101|gb|EEI21413.1| ribosomal protein L4 [Lactobacillus fermentum ATCC 14931]
 gi|260552834|gb|EEX25833.1| 50S ribosomal protein L4/L1 [Lactobacillus fermentum 28-3-CHN]
          Length = 207

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 111/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G + +++ +F+++  +      +  Q    R G    K RS V   
Sbjct: 1   MTSVALFKQDGSQNGTVELNDSVFSVEANESAEFDAILRQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    QFRGGG  FGP P    +ALP+KVR LA++ ALS K  +
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQFRGGGIVFGPTPRSYNYALPRKVRQLAIKSALSQKVAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  +V+D L     KTK        L +S  +++     D+N QL+ARN+P   ++   G
Sbjct: 121 DKFVVVDGLNFDAPKTKEFAGVMNNLKVSERVLVVVTDEDKNAQLSARNLPKTTVVTPAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+ +++   K+++++SA+  +E+  
Sbjct: 181 VNILNVVDAQKIIITQSALSQVEEVL 206


>gi|303246994|ref|ZP_07333270.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ]
 gi|302491701|gb|EFL51584.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ]
          Length = 210

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V +   ++ G + ++ ++F ++ Q  +L  V+R Q   KR G    K RS V+  
Sbjct: 1   MANVKVYDQGRQEIGDVELAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRSTVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG    GP P      + +KVR LALR ALS K   
Sbjct: 61  GKKPWRQKGTGRARAGSTRSPIWRGGAIVHGPQPRDYGFKVNRKVRLLALRMALSAKLGD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++++D L   E KTK++             +I     D N +L+ARN+P I ++    
Sbjct: 121 DSLVLVDALSVPEVKTKHMAKVTSDFG-LKKALIVLPASDNNLELSARNLPGIKVVREDM 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LR   LV+ K A   +++R 
Sbjct: 180 LNVYDVLRHDHLVMVKDAALKVQERL 205


>gi|88860958|ref|ZP_01135594.1| 50S ribosomal protein L4 [Pseudoalteromonas tunicata D2]
 gi|88817171|gb|EAR26990.1| 50S ribosomal protein L4 [Pseudoalteromonas tunicata D2]
          Length = 201

 Score =  184 bits (467), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 109/205 (53%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++  G     + VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELTLKDASGA----LEVSEATFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + +K+   A++  LS+    +
Sbjct: 57  KKPWNQKGTGRARAGTIRSPIWRSGGVTFAAKPQDHSQKVNRKMYRGAIKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK LV + + L+L +  +I   ++D N  L++RN+  +++  V GI
Sbjct: 117 RLVVVESFGIEAPKTKQLVAKLKELELKDV-LIVTEEVDENLFLSSRNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ LE+  
Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEESL 200


>gi|257125037|ref|YP_003163151.1| 50S ribosomal protein L4 [Leptotrichia buccalis C-1013-b]
 gi|257048976|gb|ACV38160.1| ribosomal protein L4/L1e [Leptotrichia buccalis C-1013-b]
          Length = 214

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 65/213 (30%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++  LDG   G I V+ D+F ++P + ++  VL  +    R G + +K R+EV   
Sbjct: 1   MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG   GP P      + KKVR LAL+ AL+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKISE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL--IIDGCQLDR-----NFQLAARNIPNI 173
            +++V+D+   +  KTK  +   +AL+   A    +     D         L+ RNI  +
Sbjct: 121 GNVIVLDDFALEIPKTKTFIDFAKALNFDGAKQLYVTNDDTDNIDRDYFLYLSTRNIEKV 180

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +  + +++Y +++  K++L+K A+  +E+  
Sbjct: 181 AAINTRDLSIYWLIKQDKVILTKEALATIEEVL 213


>gi|325267187|ref|ZP_08133854.1| 50S ribosomal protein L4 [Kingella denitrificans ATCC 33394]
 gi|324981350|gb|EGC16995.1| 50S ribosomal protein L4 [Kingella denitrificans ATCC 33394]
          Length = 206

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+  G ++ S+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKLINAQGQVSGSVAASDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VI++L +   KTK    + + L L   L +   QLD N  L++RN+PN+ +L    
Sbjct: 121 ERLFVIESLSAATPKTKDFADQVKNLGLEQVLFV-TKQLDENVYLSSRNLPNVLVLEATQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            + Y +LR  K+VL+K A+E LE+++
Sbjct: 180 ADPYSLLRYKKVVLTKEAVEQLEEQW 205


>gi|310779595|ref|YP_003967928.1| LSU ribosomal protein L4P [Ilyobacter polytropus DSM 2926]
 gi|309748918|gb|ADO83580.1| LSU ribosomal protein L4P [Ilyobacter polytropus DSM 2926]
          Length = 210

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 5/210 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ NL G+  G + V + +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNIYNLAGDQTGTLEVKDTVFGIEPNKAVLHEVLTAELAAARQGTAATKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR +AL+ ALS K   
Sbjct: 61  GRKPFKQKGTGRARQGSTRAPHMVGGGVTFGPQPRSFEKKVNKKVRKVALKSALSAKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176
             I+V+D    +  KTK ++   +AL+ +   +     L    D N  L+ARN+ N  +L
Sbjct: 121 GSIVVLDG-AIEAPKTKTIMALTKALEANTKQLFVVNDLANDADFNLYLSARNLENAVVL 179

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               + VY +L+ +K++++K A+  +E+  
Sbjct: 180 QPNELGVYWLLKQNKVIITKEALATIEEVL 209


>gi|261400053|ref|ZP_05986178.1| ribosomal protein L4/L1 family protein [Neisseria lactamica ATCC
           23970]
 gi|269210279|gb|EEZ76734.1| ribosomal protein L4/L1 family protein [Neisseria lactamica ATCC
           23970]
          Length = 206

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G +SVS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  I+ L ++  KTK    + + L L   L +   QLD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K+V++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205


>gi|310288023|ref|YP_003939282.1| 50S ribosomal protein L4 [Bifidobacterium bifidum S17]
 gi|311064896|ref|YP_003971622.1| 50S ribosomal protein L4 RplD [Bifidobacterium bifidum PRL2010]
 gi|309251960|gb|ADO53708.1| 50S ribosomal protein L4 [Bifidobacterium bifidum S17]
 gi|310867216|gb|ADP36585.1| RplD 50S ribosomal protein L4 [Bifidobacterium bifidum PRL2010]
          Length = 221

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G+  G +    ++F      ++    ++ +V+  Q    R G   +K R  
Sbjct: 4   VTLNVTDGKGQATGSVEAPAELFGHTADEVQAHVPLIHQVVVAQLAAARQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ ALR+ LSD
Sbjct: 64  VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  ++V+D  V+    TK  +     +  +    +   + + N  L+ RNIP ++ +
Sbjct: 124 RANAGRVVVVDFGVTDTPSTKAAIAALTPVTENKFTTVVFSRDNVNEWLSVRNIPTVHPI 183

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
               +N YD++    +V +K  +EA 
Sbjct: 184 FADQLNTYDVVTAQYVVFTKEGLEAF 209


>gi|228472296|ref|ZP_04057062.1| ribosomal protein, L4/L1 family [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276499|gb|EEK15223.1| ribosomal protein, L4/L1 family [Capnocytophaga gingivalis ATCC
           33624]
          Length = 209

 Score =  184 bits (467), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ G++ G  +++SE +F ++P    +   ++     +R G  KSK R+EVA +
Sbjct: 1   MEVAVVNIQGKETGRKVTLSEAVFGIEPNNHTIYLDIKQYLANQRQGTHKSKERNEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG+ FGP P      L KKV+ LA R  LS K   
Sbjct: 61  TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLNKKVKRLARRSILSQKAQQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++   +  KTK       A        +      ++N  L++RNIP++N +   
Sbjct: 121 GAIIVLEDFSLETPKTKDFTKILAALGIQDKKSLFVLADTNKNVYLSSRNIPSVNTVTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YDI     +VL +S++E ++   
Sbjct: 181 ELNTYDIANAKTVVLLESSVEVIQSNL 207


>gi|226305342|ref|YP_002765300.1| 50S ribosomal protein L4 [Rhodococcus erythropolis PR4]
 gi|229489366|ref|ZP_04383229.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis
           SK121]
 gi|226184457|dbj|BAH32561.1| 50S ribosomal protein L4 [Rhodococcus erythropolis PR4]
 gi|229323463|gb|EEN89221.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis
           SK121]
          Length = 224

 Score =  184 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V+   G+  G + +  +IF       +L +V+  Q    R G   +K R +V   G 
Sbjct: 9   TLDVKVAGGKTNGTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHSTKTRGDVRGGGK 68

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 69  KPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 128

Query: 123 IMV-IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V  + +  +   TK  +     +     L++   + D     + +N+  ++ +    +
Sbjct: 129 IHVITELVAGQTPSTKGAIAFLGEISDRKKLLLVVGRQDVAAWKSVQNLEGVHPIAPDQL 188

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A+ A 
Sbjct: 189 NTYDVLNADDVVFSVEALNAF 209


>gi|260891593|ref|ZP_05902856.1| hypothetical protein GCWU000323_02808 [Leptotrichia hofstadii
           F0254]
 gi|260858701|gb|EEX73201.1| ribosomal protein L4/L1 family protein [Leptotrichia hofstadii
           F0254]
          Length = 214

 Score =  184 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 65/213 (30%), Positives = 107/213 (50%), Gaps = 7/213 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++  LDG   G I V+ D+F ++P + ++  VL  +    R G + +K R+EV   
Sbjct: 1   MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG   GP P      + KKVR LAL+ AL+ K   
Sbjct: 61  GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKINE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL--IIDGCQLDR-----NFQLAARNIPNI 173
            +++V+D+   +  KTK  +   +AL+        I     D         L+ RNI  +
Sbjct: 121 GNVIVLDDFTLETPKTKTFINFAKALNFDGVKQLYITNDDTDNIDRDYFLYLSTRNIEKV 180

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +  + +++Y +++  K++L+K A+  +E+  
Sbjct: 181 AAINTRDLSIYWLIKQDKVILTKEALATIEEVL 213


>gi|154249816|ref|YP_001410641.1| 50S ribosomal protein L4 [Fervidobacterium nodosum Rt17-B1]
 gi|171769378|sp|A7HM51|RL4_FERNB RecName: Full=50S ribosomal protein L4
 gi|154153752|gb|ABS60984.1| ribosomal protein L4/L1e [Fervidobacterium nodosum Rt17-B1]
          Length = 223

 Score =  184 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 118/221 (53%), Gaps = 15/221 (6%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N+ GE  G I +++++F ++P   ++ R +  Q    R G + +K R EVA  
Sbjct: 1   MAQVTLYNIKGEKIGNIEIADEVFNVEPNLDVMWRYIDMQLTNSRAGTASTKTRGEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     +R GG A GP P   +  L KK++ LAL+ ALS +F  
Sbjct: 61  GRKPWPQKHTGRARQGSIRAIHWRHGGVAHGPKPRNYLKRLNKKMKKLALKSALSARFQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA----LDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
            +++V+ ++  ++ +TK +    +      +    ++    ++  N +L+ RNIP + ++
Sbjct: 121 GNLIVVSDIRFEKAQTKQMREVLKNLGIADEKVLFVLPRKEEVYENVKLSGRNIPGVKVI 180

Query: 177 -----------PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
                       + G+NVYDI+  SK+VL++  +  +E+  
Sbjct: 181 IADNPNNGNPVNIDGLNVYDIINSSKVVLTEGTVRKIEEVL 221


>gi|89095537|ref|ZP_01168442.1| 50S ribosomal protein L4 [Oceanospirillum sp. MED92]
 gi|89080212|gb|EAR59479.1| 50S ribosomal protein L4 [Oceanospirillum sp. MED92]
          Length = 201

 Score =  184 bits (466), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 105/200 (52%), Gaps = 2/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            NL G   G + VS+  F  +  + ++ +V+       R G    K RS V+  G+K + 
Sbjct: 3   LNLAGAK-GSVEVSDLAFGKEFNETLVHQVVTAYLAGGRQGTKAQKNRSAVSGGGAKPWR 61

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +R GG  F   P      + KK+   A+R   S+      ++V+
Sbjct: 62  QKGTGRARAGTSRSPIWRAGGVTFAAQPRDHSQKVNKKMFRAAMRCIFSELVRQERLVVV 121

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           +    +  KTK  V +   L+L+NAL+I   ++++N  LAARN+P++++    G++   +
Sbjct: 122 EEFAVESPKTKQFVAKLNELELNNALLI-TEEVEQNLYLAARNVPHVDVRDASGVDPVSL 180

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ +A++ +E++ 
Sbjct: 181 VGFDKVLVTVAALKKIEEKL 200


>gi|298370590|ref|ZP_06981905.1| ribosomal protein L4/L1 family protein [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281200|gb|EFI22690.1| ribosomal protein L4/L1 family protein [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 206

 Score =  184 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G +SVS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMAAILSQLARD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  I+ L ++  KTK    + R L L   L +   QLD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVRNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K++++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205


>gi|77359117|ref|YP_338692.1| 50S ribosomal protein L4 [Pseudoalteromonas haloplanktis TAC125]
 gi|109893622|sp|Q3IF24|RL4_PSEHT RecName: Full=50S ribosomal protein L4
 gi|76874028|emb|CAI85249.1| 50S ribosomal subunit protein L4 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|332038836|gb|EGI75278.1| 50S ribosomal protein L4 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 201

 Score =  184 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++  G     + VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELAIKDASGG----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG +F   P      + +K+   A++  LS+     
Sbjct: 57  KKPWAQKGTGRARAGTIRSPIWRSGGVSFAAKPQDHSQKVNRKMYRGAIKSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++      KTK LV + + L+L +  +I   ++D N  L+ARN+  ++   V GI
Sbjct: 117 RLIVVESFALAAPKTKELVAKLKELELKDV-LIVTEEVDENLFLSARNLYKVDTRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ LE+  
Sbjct: 176 DPVSLIAFDKVLITAAAVKQLEEAL 200


>gi|291280147|ref|YP_003496982.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1]
 gi|290754849|dbj|BAI81226.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1]
          Length = 209

 Score =  184 bits (466), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N + +    +++ + I +   +  ++  V+  Q   +R G   +K R EV   
Sbjct: 1   MAVIEVLNQENKKVKEVNLDDSIISYPVKPWLMHEVVVMQLACRRAGTHSTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P    + +PKK    AL+ AL  K   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWVGGGTIFGPKPRDYSYKMPKKKVKNALKSALRAKLED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + +I++L  +  KTK  V   +    +  +++   +LD     A RNIP + LL V+G
Sbjct: 121 NALKIIESLNVENGKTKEAVAILKNFGANRKVLVVYNELDEKVIRAFRNIPYVKLLNVKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD++    +++ +  +  + +  
Sbjct: 181 LNVYDLINARTILMLEDCLPRITEVL 206


>gi|319778742|ref|YP_004129655.1| LSU ribosomal protein L4p (L1e) [Taylorella equigenitalis MCE9]
 gi|317108766|gb|ADU91512.1| LSU ribosomal protein L4p (L1e) [Taylorella equigenitalis MCE9]
          Length = 206

 Score =  184 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 102/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    IS S+ IF  +  + ++ +++       R G    K RSEV +T 
Sbjct: 1   MDLKLINDQGQSSETISASDAIFGREFNEALVHQLVVAYQANARGGNRAQKDRSEVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       L KK+  + +R   S     
Sbjct: 61  KKPWRQKGTGRARAGMTSSPLWRGGGRTFPNSPEENFSQKLNKKMYRVGIRSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+D       KTK    R + +   ++++I    LD N  LA RN+P++ ++  + 
Sbjct: 121 DRIAVVDTFTFDSPKTKQAAARLKDMG-LDSVLIITDSLDENTYLATRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+AI  LE+ F
Sbjct: 180 ADPLSLVHYKKVLITKAAIAQLEEMF 205


>gi|295111421|emb|CBL28171.1| LSU ribosomal protein L4P [Synergistetes bacterium SGP1]
          Length = 207

 Score =  184 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V +  G+  G + +SE +F        + +V+       R G    K R +V+  
Sbjct: 1   MPTIKVVDFSGQSAGEMELSEVVFGAPIHVAAMHQVVVAHLANCRQGTHAVKTRGDVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     +  GG A GP        + KKVR LAL  ALS K   
Sbjct: 61  GKKPWRQKHTGRARQGSTRSPLWVHGGVAHGPKMRDYSQKVNKKVRRLALLSALSVKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+  +  +   TK +     A+    AL+I       N   + RNIP    L V  
Sbjct: 121 AQMLVVRGMEMEAPSTKTMKGFMDAIGAEKALVIYSGNG-ENVARSVRNIPGARYLNVAS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVYD+L    LV++   +  LE+ +
Sbjct: 180 INVYDLLNSRTLVVTPEVVARLEEVY 205


>gi|260439542|ref|ZP_05793358.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2]
 gi|291042778|ref|ZP_06568519.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2]
 gi|291013212|gb|EFE05178.1| 50S ribosomal protein L4 [Neisseria gonorrhoeae DGI2]
          Length = 206

 Score =  184 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G +SVS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGT RAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTDRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VI+ L ++  KTK    + + L L   L +   +LD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFVIEALTAETPKTKVFAEQVKNLALEQVLFV-TKRLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K++++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205


>gi|262197187|ref|YP_003268396.1| ribosomal protein L4/L1e [Haliangium ochraceum DSM 14365]
 gi|262080534|gb|ACY16503.1| ribosomal protein L4/L1e [Haliangium ochraceum DSM 14365]
          Length = 215

 Score =  184 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 3/210 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L ++N  GE  G I + + IFA +  + +   V++WQ  R+R G   +K R EV  +
Sbjct: 1   MPKLDIKNTAGETVGDIDLDDAIFAEEVHEHLFWEVVKWQRARRRAGTHSTKRRGEVRGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K Y QKGTGRAR   +    + GGG  FGP P    +ALPKKVR  ALR ALS +   
Sbjct: 61  NIKPYRQKGTGRARQGDRKAPHWVGGGSVFGPKPRSYDYALPKKVRKKALRSALSLRAKE 120

Query: 121 NDIMVIDNLVSKECKTKY---LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             ++V+D    +  KT+     +    A    N ++I     + +     RN+     L 
Sbjct: 121 QKLVVLDAFPVEGGKTRNVVSALAALGAAHTDNRVLIVDAGDNLDLIRGTRNLRGSKWLA 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207
            +G+NVYDIL  S LV++ + ++A+E   +
Sbjct: 181 PEGLNVYDILDHSTLVMTSATVKAVERALQ 210


>gi|255067457|ref|ZP_05319312.1| ribosomal protein L4/L1 family protein [Neisseria sicca ATCC 29256]
 gi|261364856|ref|ZP_05977739.1| ribosomal protein L4/L1 family protein [Neisseria mucosa ATCC
           25996]
 gi|261378042|ref|ZP_05982615.1| ribosomal protein L4/L1 family protein [Neisseria cinerea ATCC
           14685]
 gi|296313366|ref|ZP_06863307.1| ribosomal protein L4/L1 family protein [Neisseria polysaccharea
           ATCC 43768]
 gi|313667442|ref|YP_004047726.1| 50S ribosomal protein L4 [Neisseria lactamica ST-640]
 gi|255048252|gb|EET43716.1| ribosomal protein L4/L1 family protein [Neisseria sicca ATCC 29256]
 gi|269145492|gb|EEZ71910.1| ribosomal protein L4/L1 family protein [Neisseria cinerea ATCC
           14685]
 gi|288566905|gb|EFC88465.1| ribosomal protein L4/L1 family protein [Neisseria mucosa ATCC
           25996]
 gi|296840077|gb|EFH24015.1| ribosomal protein L4/L1 family protein [Neisseria polysaccharea
           ATCC 43768]
 gi|308388359|gb|ADO30679.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha710]
 gi|313004904|emb|CBN86330.1| 50S ribosomal protein L4 [Neisseria lactamica 020-06]
 gi|325131085|gb|EGC53808.1| ribosomal protein L4 [Neisseria meningitidis OX99.30304]
 gi|325137201|gb|EGC59796.1| ribosomal protein L4 [Neisseria meningitidis M0579]
 gi|325203022|gb|ADY98476.1| ribosomal protein L4 [Neisseria meningitidis M01-240149]
 gi|325207179|gb|ADZ02631.1| ribosomal protein L4 [Neisseria meningitidis NZ-05/33]
          Length = 206

 Score =  184 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G +SVS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  I+ L ++  KTK    + + L L   L +   QLD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K++++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205


>gi|209165345|gb|ACI41234.1| ribosomal protein L4 [Mycobacterium bolletii]
 gi|209165349|gb|ACI41236.1| ribosomal protein L4 [Mycobacterium abscessus]
          Length = 199

 Score =  184 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 11  GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70
           G+  G I +  ++F       +L +V+  Q    R G   +K R  V+  G K Y QKGT
Sbjct: 1   GKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGT 60

Query: 71  GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNL 129
           GRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  I  V + +
Sbjct: 61  GRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELV 120

Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
             +E  TK   +    +     L++   + D     + RN+PN+++L    +N YD+L+ 
Sbjct: 121 AGQEPSTKSAKSFLGEITDRKQLLVVLGRDDLASVKSVRNLPNVHVLAYDQLNTYDVLKA 180

Query: 190 SKLVLSKSAIEAL 202
             +V S  A+   
Sbjct: 181 DDVVFSVEALNGF 193


>gi|219849886|ref|YP_002464319.1| 50S ribosomal protein L4/L1e [Chloroflexus aggregans DSM 9485]
 gi|219544145|gb|ACL25883.1| ribosomal protein L4/L1e [Chloroflexus aggregans DSM 9485]
          Length = 222

 Score =  184 bits (466), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 4/206 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ ++ N  GE  G I VS+ IF ++P   ++ + +  Q+   R+G   ++GR EV  + 
Sbjct: 1   MQATLYNQAGEQVGSIEVSDYIFGIEPNVPVMHQYVVMQNANARLGTHNTRGRGEVKGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRAR  S      +GGG A GP P     ++P+K+R L +R ALS KF +N
Sbjct: 61  RKLYRQKGTGRARQGSIRAPHHKGGGVAHGPHPRSYRVSMPRKMRRLGVRSALSVKFAAN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLLP 177
            I  ID L   + +TK  V   +A  L++   +         + N + +A N+P +  L 
Sbjct: 121 QIRFIDELTFPQPRTKDFVAFLQAHGLADKKTLVVIDSKSPANENLRRSANNLPKVKTLL 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203
              +NV D+L    +++ K+A++ +E
Sbjct: 181 AHYLNVRDLLVYDHIIMPKAAVQVVE 206


>gi|306821619|ref|ZP_07455217.1| ribosomal protein L4/L1 family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550364|gb|EFM38357.1| ribosomal protein L4/L1 family protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 208

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +++G+    + +SE +FA K  +  +   ++     KR G   +K R+EV   
Sbjct: 1   MPKIDVLDINGKVVEQMEISEALFAAKVNEHCVYEAVKNHLANKRQGTQCTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+ GGG  F P P    + + KK++ +AL+  L+DK  +
Sbjct: 61  GRKPWRQKGTGRARQGSTRSPQWIGGGVVFAPKPRDYSYKINKKIKRIALKSVLTDKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++V++ LV  + KTK      +         +    + D     + RNI  +++    
Sbjct: 121 NKLVVLNELVISDAKTKAFAQVMKNLQLSGVKTLFVTKENDPEVVRSGRNIKGVDITFAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN YDI+    LV++K A+   ++ F
Sbjct: 181 LINTYDIINHEVLVMTKDAVIKAQEVF 207


>gi|209165347|gb|ACI41235.1| ribosomal protein L4 [Mycobacterium massiliense]
          Length = 199

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 1/193 (0%)

Query: 11  GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70
           G+  G I +  ++F       +L +V+  Q    R G   +K R  V+  G K Y QKGT
Sbjct: 1   GKTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGT 60

Query: 71  GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNL 129
           GRAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  I  V + +
Sbjct: 61  GRARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELV 120

Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
             +E  TK   +    +     L++   + D     + RN+PN+++L    +N YD+L+ 
Sbjct: 121 AGQEPSTKSAKSFLAEITDRKQLLVVLGRDDLASVKSVRNLPNVHVLAYDQLNTYDVLKA 180

Query: 190 SKLVLSKSAIEAL 202
             +V S  A+   
Sbjct: 181 DDVVFSVEALNGF 193


>gi|148655336|ref|YP_001275541.1| 50S ribosomal protein L4/L1e [Roseiflexus sp. RS-1]
 gi|148567446|gb|ABQ89591.1| LSU ribosomal protein L4P [Roseiflexus sp. RS-1]
          Length = 223

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/199 (33%), Positives = 111/199 (55%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  + N  GE+ GVI +S+ +F ++P   ++ + +  Q    R+G   + GR EV  + 
Sbjct: 1   MEARLYNQSGEEVGVIQISDYVFGIEPNVPVMHQAMERQRANARLGTHNTLGRGEVEGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRAR  S      +GGG A GP P     A+P+K+R LA+R ALS ++   
Sbjct: 61  RKLYRQKGTGRARQGSIRAPHRKGGGIAHGPHPRKYTKAMPRKMRRLAVRSALSARYRDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I  +D L  ++ +TK ++    AL+L+   +I   Q D   + +A N+PN+  L    +
Sbjct: 121 AITFLDRLTFEKPRTKDMIAVLNALNLTGKTLIVLDQKDEYVRRSANNLPNVKTLLAHYL 180

Query: 182 NVYDILRCSKLVLSKSAIE 200
           NV D+L    +V+ ++A++
Sbjct: 181 NVIDLLTHDHIVMLQAAVD 199


>gi|75906915|ref|YP_321211.1| 50S ribosomal protein L4 [Anabaena variabilis ATCC 29413]
 gi|109893575|sp|Q3MFC0|RL4_ANAVT RecName: Full=50S ribosomal protein L4
 gi|75700640|gb|ABA20316.1| LSU ribosomal protein L4P [Anabaena variabilis ATCC 29413]
          Length = 210

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+E  V+N  GE  G  +    +        I+ R L  Q    R G + +K R+EV   
Sbjct: 1   MVESVVKNWQGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRLALRTALVSRIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++   +      KTK LV  F     +  + +++   +   N  L+ARNI N+ L+  
Sbjct: 121 LILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   K+V++ SA+E +++ +
Sbjct: 181 DQLNVYDLLHADKIVVTTSALEKIQEVY 208


>gi|308272978|emb|CBX29582.1| 50S ribosomal protein L4 [uncultured Desulfobacterium sp.]
          Length = 207

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 120/206 (58%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V NL+GE    + +++ IF +  +  +L  V+  Q   +R G +  K RS+V  +
Sbjct: 1   MSLIDVYNLNGEKVSQLELTDSIFNIPVKPSVLHEVVTMQLACRRAGSASVKHRSDVRGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTGRAR         RGGG  FGP P    + +PKK++ LAL+ ALS K  +
Sbjct: 61  TRKLFRQKGTGRARRGDIKSPLLRGGGSIFGPDPRSYSYKVPKKIKKLALKMALSSKTIN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N+++VID    +E KTK  +     L      +I   +L+ + +L++RN+P+I ++  +G
Sbjct: 121 NNLIVIDKFELEEAKTKNFIAVINTLK-IKKALIITEKLNESLELSSRNVPDIKVMRFEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+  KL+L +++I+ +E R 
Sbjct: 180 LNVYDILKYDKLILLETSIKGIEGRL 205


>gi|85057801|ref|YP_456717.1| 50S ribosomal protein L4 [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|109893576|sp|Q2NIV5|RL4_AYWBP RecName: Full=50S ribosomal protein L4
 gi|84789906|gb|ABC65638.1| LSU ribosomal protein L1E [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 207

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 110/207 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++ N  G+      ++  +F +KP Q +L  V+  Q    R G   +K R+ VA  
Sbjct: 1   MPKINILNQQGDLVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +RGGG  FGP P      + +KVR LAL+ ALS +  +
Sbjct: 61  GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRNYSVKVNQKVRILALKSALSLQVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+DN+     KTK      + L++++  +I   Q+     LA+RN+  I L     
Sbjct: 121 NQLVVLDNINLATHKTKDFQQMLQKLNITSKSLIVVTQMTEQLALASRNLSYITLETASH 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +VY IL C +LVL+  A+   E+  K
Sbjct: 181 ASVYQILNCKQLVLTADAVNYFEEVLK 207


>gi|328675408|gb|AEB28083.1| LSU ribosomal protein L4p (L1e) [Francisella cf. novicida 3523]
          Length = 207

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++++L G++ G + V+E +FA    + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     FR GG  F   P      + +K+ S A++  LS+   S+
Sbjct: 61  AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180
            + V+++L  +  KTK   +   +L + + L + G  + + N  L++RN+ N+ +     
Sbjct: 121 RMTVVESLKLETPKTKEFKSIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN   ++    +V +K AI+ +E++ 
Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206


>gi|309379158|emb|CBX22289.1| 50S ribosomal protein L4 [Neisseria lactamica Y92-1009]
          Length = 206

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G +SVS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLARD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  I+ L  +  KTK    + + L L   L +   QLD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFAIEALTVETPKTKVFAEQVKNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K++++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205


>gi|221133615|ref|ZP_03559920.1| 50S ribosomal protein L4 [Glaciecola sp. HTCC2999]
          Length = 201

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++ +      + VS+  F  +  + ++ +V+       R G    K RSEV   G
Sbjct: 1   MELTLKDAN----SALEVSDATFGREFNEALVHQVVVAFGAGARQGTKAQKTRSEVRGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     + GGG+AF   P      + KK+   A+R  LS+     
Sbjct: 57  KKPWRQKGTGRARAGTIRSPIWVGGGRAFAAKPRDFDQKVNKKMYRGAIRSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L+      DL++  +I   ++D N  LA+RN+  +++  VQGI
Sbjct: 117 RLIVVEKFGVEAPKTKELLNALSTYDLNDV-LIVTPEVDENLFLASRNLYKVDVRDVQGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ LE+  
Sbjct: 176 DPVSLIAFEKVLITADAVKQLEEAL 200


>gi|78357299|ref|YP_388748.1| 50S ribosomal protein L4 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|109893592|sp|Q30Z43|RL4_DESDG RecName: Full=50S ribosomal protein L4
 gi|78219704|gb|ABB39053.1| LSU ribosomal protein L4P [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 206

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 119/207 (57%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V + D ++ G ++++ ++F ++ +  IL  V+R Q   KR G    K RS ++  
Sbjct: 1   MAVVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S     +RGG   FGP P      + KKVR LAL+ ALS +   
Sbjct: 61  GAKPWRQKGTGRARSGSNRSPVWRGGAVVFGPQPRDYSFKVNKKVRKLALKMALSSRLAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++MV+  +   E KTK++V    AL      ++   ++D    L+ARNIP I L+  + 
Sbjct: 121 ENLMVVKGIELPEVKTKHMVKVAGALG-LGKALVVTPEMDDKLVLSARNIPGITLMTPEQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++V++IL+ ++LVL + A+E +++R K
Sbjct: 180 LSVFEILKHAQLVLLEGAVEPVQERLK 206


>gi|238021592|ref|ZP_04602018.1| hypothetical protein GCWU000324_01492 [Kingella oralis ATCC 51147]
 gi|237866206|gb|EEP67248.1| hypothetical protein GCWU000324_01492 [Kingella oralis ATCC 51147]
          Length = 206

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + +  G+  G ++ S+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKLIDAKGQVSGSVAASDALFAREYNEALVHQLVVAFLANARSGNRAQKTRAEVNHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VI++L +   KTK    + + L +   L +   QLD N  L++RN+PN+ +L    
Sbjct: 121 ERLFVIESLSAATPKTKEFAEQVKNLGMEQVLFV-TKQLDENVYLSSRNLPNVLVLEATQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+ Y +LR  K+V++K A+  LE+++
Sbjct: 180 IDPYSLLRYKKVVITKEAVAQLEEQW 205


>gi|237739367|ref|ZP_04569848.1| LSU ribosomal protein L1E [Fusobacterium sp. 2_1_31]
 gi|229422975|gb|EEO38022.1| LSU ribosomal protein L1E [Fusobacterium sp. 2_1_31]
          Length = 209

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L+V NL+G     + V + +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNVYNLEGNQIDTLEVKDTVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPV 178
            +++V+D       KTK +V     +D     +     L  D N  L+ARN+ N  +L  
Sbjct: 121 GNVLVLDYEGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I VY +L+  K++L+K A+  +E+  
Sbjct: 181 NEIGVYWLLKQEKVILTKEALAVVEEVL 208


>gi|291298711|ref|YP_003509989.1| 50S ribosomal protein L4/L1e [Stackebrandtia nassauensis DSM 44728]
 gi|290567931|gb|ADD40896.1| ribosomal protein L4/L1e [Stackebrandtia nassauensis DSM 44728]
          Length = 217

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           E++V +  G+  G +++  ++F  +    ++ +V+  Q   KR G   +K R  V+  G+
Sbjct: 4   EVNVTDATGKKTGTVTLPAELFEREVNIHLMHQVVTAQLAAKRQGTHATKTRGAVSGGGA 63

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ AL  ALSD+  S  
Sbjct: 64  KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALASALSDRAASEV 123

Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+   L     KTK  +   RA   +  +++   + D     + RN PN++LL    +
Sbjct: 124 VHVVTGLLDGDTPKTKDALKALRATTEAKKVLMVLDREDELTWKSLRNDPNVHLLFHDQL 183

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    LV SK+A +  
Sbjct: 184 NTYDVLVNDALVFSKAAFDDF 204


>gi|114319620|ref|YP_741303.1| 50S ribosomal protein L4P [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312455|sp|Q0ABH4|RL4_ALHEH RecName: Full=50S ribosomal protein L4
 gi|114226014|gb|ABI55813.1| LSU ribosomal protein L4P [Alkalilimnicola ehrlichii MLHE-1]
          Length = 205

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +RN  G+  G + V++  F  + ++ ++ +V+       R G    K R+EV   G
Sbjct: 1   MELQLRNAQGQTDGSVQVADAAFGDRFREALIHQVVVAYLAGARAGTRAQKTRAEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     + GGG+AF   P      + KK+   ALR   S+     
Sbjct: 61  AKPWRQKGTGRARAGTIRSPIWVGGGRAFAARPQDHGQKVNKKMYRGALRSIFSELARQE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++++   E KT  L  +   L      +I   ++D+N  LAARN+P +++  V G+
Sbjct: 121 RLVVVESIGVDEPKTAKLAAQLEQLG-VERPLIVADEVDQNLYLAARNLPGVDVRDVPGL 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   ++V++  A+  +E+  
Sbjct: 180 DPVALVGAEQVVITVQALRQVEEWL 204


>gi|17231706|ref|NP_488254.1| 50S ribosomal protein L4 [Nostoc sp. PCC 7120]
 gi|46576839|sp|Q8YPI0|RL4_ANASP RecName: Full=50S ribosomal protein L4
 gi|17133349|dbj|BAB75913.1| 50S ribosomal protein L4 [Nostoc sp. PCC 7120]
          Length = 210

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 102/208 (49%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+E  V+N  GE  G  +    +        I+ R L  Q    R G + +K R+EV   
Sbjct: 1   MVESVVKNWQGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRLALRTAFVSRIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++   +      KTK LV  F     +  + +++   +   N  L+ARNI N+ L+  
Sbjct: 121 LILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   K+V++ SA+E +++ +
Sbjct: 181 DQLNVYDLLHADKIVVTTSALEKIQEVY 208


>gi|78484641|ref|YP_390566.1| ribosomal protein L4/L1e [Thiomicrospira crunogena XCL-2]
 gi|109893657|sp|Q31IY1|RL4_THICR RecName: Full=50S ribosomal protein L4
 gi|78362927|gb|ABB40892.1| LSU ribosomal protein L4P [Thiomicrospira crunogena XCL-2]
          Length = 206

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L +  L  G++ G + VSE IF  +  + ++ +V+       R G    K RS V   
Sbjct: 1   MDLKLIELASGKEAGSVKVSEAIFGAEFNEALVHQVVNAYLAGARSGTKGQKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKG+GRAR  +     + GGG+AF          + KK+   A++   S+   +
Sbjct: 61  GAKPWAQKGSGRARAGTSRGPIWIGGGRAFPGHNRDFSQKVNKKMYRGAMKAIFSELART 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+   +  KTK  V +   L+L +A ++     D    L+ARN+ + ++  V  
Sbjct: 121 ERLVVVDDFKVEAPKTKDFVAKLNTLNLKDA-LVITEGFDEYLYLSARNLYHADVCDVAS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+   ++    +V+++ AI+ LE++ 
Sbjct: 180 IDPVSLVGFKSIVVTQGAIKQLEEKL 205


>gi|56461023|ref|YP_156304.1| 50S ribosomal protein L4 [Idiomarina loihiensis L2TR]
 gi|81600116|sp|Q5QXZ1|RL4_IDILO RecName: Full=50S ribosomal protein L4
 gi|56180033|gb|AAV82755.1| Ribosomal protein L4 [Idiomarina loihiensis L2TR]
          Length = 201

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++  G     + VSE  F  +  + ++ +V+   +   R G    K RSEVA  G
Sbjct: 1   MELTLKDAKGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTKAQKTRSEVAGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 57  KKPWRQKGTGRARAGTIRSPIWRSGGATFAAKPQNHSQKVNKKMYRGAIKSILSELIRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++     E KTK L  + + +DL++  +I   ++D N  LA+RN+  +++  VQGI
Sbjct: 117 RLIVVEKFGVDEPKTKQLAAKLKEMDLNDV-LIVTKEVDENLFLASRNLHKVDVRDVQGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ LE+  
Sbjct: 176 DPVSLIAFEKVLMTADAVKQLEEVL 200


>gi|255038090|ref|YP_003088711.1| 50S ribosomal protein L4 [Dyadobacter fermentans DSM 18053]
 gi|254950846|gb|ACT95546.1| ribosomal protein L4/L1e [Dyadobacter fermentans DSM 18053]
          Length = 209

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/207 (35%), Positives = 116/207 (56%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELSV N+ GED G  ++VSE++F ++P    +   ++     +R G  KSK R+EV+++
Sbjct: 1   MELSVLNIKGEDTGKKVTVSEEVFGIEPSTHAIYLDVKLYLANQRQGTHKSKERAEVSHS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG+ FGP P      L KKV++LA R ALS K  +
Sbjct: 61  TRKIKRQKGTGGARAGSIKSPVFVGGGRIFGPRPRTYGFKLNKKVKALARRSALSVKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N + V++       KTK  +    +L   +   ++   ++D N  L++RNIP   +  V 
Sbjct: 121 NAVSVLEAFTFDAPKTKSYLNVLNSLSLANTKTLLILPEIDNNVYLSSRNIPKAKVTTVD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YD++   +L++S+SAI  LE + 
Sbjct: 181 SVNTYDLMNADRLLISESAISILETQL 207


>gi|307154841|ref|YP_003890225.1| 50S ribosomal protein L4/L1e [Cyanothece sp. PCC 7822]
 gi|306985069|gb|ADN16950.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7822]
          Length = 210

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   V+N DG++ G   +   +   +    IL R +  Q    R G + +K RSEV   
Sbjct: 1   MVNCVVKNWDGDEVGQTPLELKVAKEETASHILHRAVVRQLANARQGTASTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR AL+++  +
Sbjct: 61  GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYNLKMNRKERRLALRTALNNQAEN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             I+        + KT+ L +          + +++   ++  N  L+ARNI N+ ++  
Sbjct: 121 LIIVENFGEQFPQPKTRELASALARWGVTEKDKVLLILSEIPENVGLSARNICNVKVIKA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L  SKLV +  A+E + + +
Sbjct: 181 DSLNVYDLLTASKLVATSDALEKILEVY 208


>gi|294790412|ref|ZP_06755570.1| ribosomal protein L4/L1 family protein [Scardovia inopinata F0304]
 gi|294458309|gb|EFG26662.1| ribosomal protein L4/L1 family protein [Scardovia inopinata F0304]
          Length = 219

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 4   LSVRNLDGEDKGVISVSEDIFAL---KPQQGI--LARVLRWQSWRKRIGCSKSKGRSEVA 58
           L V  LDG + G ++  E+IF +   + +  I  + +V+  Q    R G    K R+ ++
Sbjct: 6   LKVTGLDGVEAGSVTAPEEIFGIAQDEVRTHIPLVHQVVVAQLAAARQGTHAVKNRARIS 65

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
             G K + QKGTGRAR  S    QF GG    GPVP       PKK++  ALR+ LSD+ 
Sbjct: 66  GGGKKPWKQKGTGRARQGSIRAPQFAGGAVVHGPVPRDYSQRTPKKMKQAALRYVLSDRA 125

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            +  + V+D  +  +  TK  +     +       +   + + N  L+ RN+P +++L  
Sbjct: 126 NAGRVHVVDFGLGDKPSTKSALAALNPVVAQRFTTVVLDRENINEWLSVRNLPTVHVLFA 185

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD++    LV +K  +EA 
Sbjct: 186 DQLNTYDVVTAEDLVFTKEGLEAF 209


>gi|162149173|ref|YP_001603634.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545083|ref|YP_002277312.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
 gi|189029506|sp|A9H3R2|RL4_GLUDA RecName: Full=50S ribosomal protein L4
 gi|161787750|emb|CAP57346.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532760|gb|ACI52697.1| ribosomal protein L4/L1e [Gluconacetobacter diazotrophicus PAl 5]
          Length = 204

 Score =  183 bits (464), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 113/205 (55%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  ++ LD    G   + ++IF + P+  I+ARV+ WQ  ++R G  K KG  EV+ T 
Sbjct: 1   MDYEIKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    Q+R GG   GPV     + LPKKVR L L  ALS K    
Sbjct: 61  KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D   +   +T  L  + +AL    + +I    ++ NF  AARN+P I+ LP  G 
Sbjct: 121 KLVVLDA-ATASGRTSELAAKVKALG-WKSALIVDATVEENFGRAARNLPKIDALPTIGA 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL    L ++++ +E L++R 
Sbjct: 179 NVYDILNHDVLAITRAGVEGLKERL 203


>gi|54022701|ref|YP_116943.1| 50S ribosomal protein L4 [Nocardia farcinica IFM 10152]
 gi|81603036|sp|Q5Z1W2|RL4_NOCFA RecName: Full=50S ribosomal protein L4
 gi|54014209|dbj|BAD55579.1| putative ribosomal protein L4 [Nocardia farcinica IFM 10152]
          Length = 230

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 89/200 (44%), Gaps = 1/200 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L V+   G+  G + +  +IF +     ++ +V+  Q    R G   +K R EV+  G K
Sbjct: 18  LPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGGGKK 77

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QKGTGRAR  S    QF GGG   GP P       PKK+   AL  ALSD+  ++ I
Sbjct: 78  PYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIRAALHGALSDRARNDRI 137

Query: 124 M-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
             V + +  +   TK        L      ++   + D     +  N+ N+  +    +N
Sbjct: 138 HVVSELVAGQTPSTKTAKNFLAELSDRKKFLVVVGREDVTAWKSVANLQNVQPIAPDQLN 197

Query: 183 VYDILRCSKLVLSKSAIEAL 202
            YD+L    +V S  A+ A 
Sbjct: 198 TYDVLNSDDVVFSVEALNAF 217


>gi|326799128|ref|YP_004316947.1| ribosomal protein L4/L1e [Sphingobacterium sp. 21]
 gi|326549892|gb|ADZ78277.1| ribosomal protein L4/L1e [Sphingobacterium sp. 21]
          Length = 209

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N+ G++ G  + + E +F + P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MEVQVLNISGKETGAKVQLPEAVFGVTPNDHAIYLDVKQYLANQRQGTHKSKQRNEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTG AR  S     F GGG+ FGP P      L KK+++LA + ALS K   
Sbjct: 61  TRKLHKQKGTGGARAGSIKSPLFNGGGRIFGPQPRDYSFKLNKKLKALARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+D +     KTK  V         +   ++    L++N  L++RN+    ++   
Sbjct: 121 NNIVVLDEVNFDSIKTKNYVKLVNDLNVANEKTLLVLPALNKNVYLSSRNLKKTKVITAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN YD+L   KL+L+   ++ LE+ F
Sbjct: 181 DINTYDVLNAGKLLLTTETVKTLEEAF 207


>gi|304438906|ref|ZP_07398829.1| ribosomal protein L4/L1 family protein [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304372572|gb|EFM26155.1| ribosomal protein L4/L1 family protein [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 229

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 22/229 (9%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFAL----------------------KPQQGILARVLR 38
           M ++ V ++ G +   I + E+IF L                      +  +  +  V++
Sbjct: 1   MTKVKVFDMTGAEVSEIELDENIFGLKEELTEEEIEKLVEEGNFDTENRINRHAVYLVVK 60

Query: 39  WQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV 98
            Q   KR G    K R+EV   G K + QKGTGRAR  S    Q+R GG  F   P    
Sbjct: 61  NQLANKRQGTHACKTRAEVRGGGRKPWRQKGTGRARQGSIRSPQWRKGGIVFAKKPRDYS 120

Query: 99  HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           +  PKKVR LAL+  L+ K   N+I+VID++     KTK       A+ +  +  +   +
Sbjct: 121 YTTPKKVRRLALKSVLTSKVNLNEIIVIDDIKMDNIKTKDFKNFLNAVGVKKSAYVVTAE 180

Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
            DRN  L+ARNI  +     + INVYD+L+   LV+SK+A+  + + FK
Sbjct: 181 HDRNVNLSARNIAGVKASEARLINVYDLLKHENLVISKAALGTVSEVFK 229


>gi|212716610|ref|ZP_03324738.1| hypothetical protein BIFCAT_01539 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660314|gb|EEB20889.1| hypothetical protein BIFCAT_01539 [Bifidobacterium catenulatum DSM
           16992]
          Length = 221

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G   G +    +IF      ++ +  ++ +V+  Q    R G   +K R  
Sbjct: 4   VTLNVTDNQGNATGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQRAAARQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ AL++ LSD
Sbjct: 64  VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  + V+D  VS+   TK  V     +  +    +   + + N  L+ RNIP ++ +
Sbjct: 124 RANAGHVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
               +N YD++    +V SK   +A 
Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209


>gi|111023097|ref|YP_706069.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1]
 gi|110822627|gb|ABG97911.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1]
          Length = 229

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V+   G+  G + +  +IF       +L +V+  Q    R G   +K R EV   G 
Sbjct: 12  TLDVKVAGGKTNGTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGK 71

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 72  KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 131

Query: 123 IMV-IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I V  + +  +   TK   T    +     +++   + D     + +N+  ++ +    +
Sbjct: 132 IHVITELVAGQTPSTKSARTFLGEISDRKKVLLVVGREDIAAWKSVQNLDGVHPIAPDQL 191

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A+ + 
Sbjct: 192 NTYDVLNSDDVVFSVEALNSF 212


>gi|261391679|emb|CAX49128.1| 50S ribosomal protein L4 [Neisseria meningitidis 8013]
          Length = 206

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G +SVS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLTRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  I+ L ++  KTK    + + L L   L +   QLD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K+V++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVVITKDAVAQLEEQW 205


>gi|269122980|ref|YP_003305557.1| 50S ribosomal protein L4/L1e [Streptobacillus moniliformis DSM
           12112]
 gi|268314306|gb|ACZ00680.1| ribosomal protein L4/L1e [Streptobacillus moniliformis DSM 12112]
          Length = 214

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/209 (33%), Positives = 114/209 (54%), Gaps = 5/209 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V NL+GE+KGV +VS +IF L+P + ++  VL  +    R G + +K R EV+  G 
Sbjct: 5   NLKVYNLNGEEKGVTTVSSEIFGLEPNKYVMHEVLTAELAASRAGTASTKTRGEVSGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S       GGG   GP P      + KKVR LAL+ AL+ +  + D
Sbjct: 65  KPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYDKKVNKKVRKLALKSALAVRIQNGD 124

Query: 123 IMVIDNLVSKECKTKYLV---TRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLP 177
           ++V+++ +    KTK  V    +   ++     I++      D N  L+ RNI    +L 
Sbjct: 125 VIVLEDYMLDTPKTKAFVNFTEKVNMVEDKKLFIVNDYLEDADWNLYLSVRNIEKTEILD 184

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
            + ++VY +L+ +K+V++K A+  +E+  
Sbjct: 185 PRELSVYALLKFNKVVITKEALATIEEVL 213


>gi|189347702|ref|YP_001944231.1| 50S ribosomal protein L4 [Chlorobium limicola DSM 245]
 gi|226730636|sp|B3EGY9|RL4_CHLL2 RecName: Full=50S ribosomal protein L4
 gi|189341849|gb|ACD91252.1| ribosomal protein L4/L1e [Chlorobium limicola DSM 245]
          Length = 208

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N  G + G + +++++IF     +  +   ++     +R G  K+K R+EV   
Sbjct: 1   MELKVLNTGGTETGEVVTLNDEIFGADISEHAMYLDVKSILANRRQGTHKAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S       GGG  FGP P      + KKV+ LA R ALS K  +
Sbjct: 61  GRKPFRQKGTGNARQGSTRSPLMIGGGTIFGPQPRSYDQKVNKKVKQLARRSALSAKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++    E KTK +    + L       ++   + D     + RNI  +N++  +
Sbjct: 121 GQIVVVEDFRLGEIKTKPVADILKNLGLAEKKTLMLTPEYDMIIARSGRNIEALNIMSAE 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL    +V  K+A++ +ED  
Sbjct: 181 KASTYDILDSQAIVFQKAALKKIEDTL 207


>gi|154494381|ref|ZP_02033701.1| hypothetical protein PARMER_03736 [Parabacteroides merdae ATCC
           43184]
 gi|154085825|gb|EDN84870.1| hypothetical protein PARMER_03736 [Parabacteroides merdae ATCC
           43184]
          Length = 209

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELSV N+ GED G  +++++ IF ++P    +   ++     +R G  KSK RSEV+ +
Sbjct: 1   MELSVLNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + AL+ K  +
Sbjct: 61  TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKGLARKSALTYKAKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  VT  +        L++   + +    L+ARN+   N++   
Sbjct: 121 NAIVVVEDFTLEAPKTKEFVTIAKNLKVADGKLLLVLSEKNNFVYLSARNLEKANVITAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LVL++S++  +E  F
Sbjct: 181 ELNTYSVLNAVNLVLTESSVAVIEKLF 207


>gi|283768461|ref|ZP_06341373.1| ribosomal protein L4/L1 family protein [Bulleidia extructa W1219]
 gi|283104853|gb|EFC06225.1| ribosomal protein L4/L1 family protein [Bulleidia extructa W1219]
          Length = 209

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N + +    + +S+ +F+++P Q ++   +       R G   +  RS V+ T
Sbjct: 1   MAKMEVFNQEAKSVKTVEISDAVFSIEPNQQVMFDAVLAYQAGLRQGTHSTLTRSFVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+R G  AFGP P        +KVR LALR ALS+K   
Sbjct: 61  GKKPFRQKGTGRARQGSTRAIQWRHGAVAFGPHPRKYGVKTNRKVRRLALRSALSEKVLE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF--QLAARNIPNINLLPV 178
           ++ ++I+NL  +E KTK  V   +A       +      +      ++ RN+PN  +  V
Sbjct: 121 SNFVLIENLNFEEMKTKKAVALLKAFGFDRKTLFVVDASEDFVNAYISMRNLPNALVTTV 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD++  +K+V ++ A E   + F
Sbjct: 181 FDLNVYDLVNANKVVFTEKAAEKAGEVF 208


>gi|116624201|ref|YP_826357.1| 50S ribosomal protein L4 [Candidatus Solibacter usitatus Ellin6076]
 gi|122253083|sp|Q01W93|RL4_SOLUE RecName: Full=50S ribosomal protein L4
 gi|116227363|gb|ABJ86072.1| LSU ribosomal protein L4P [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 208

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V +L+ +    + +++D+F  +  Q +L   +R      R G   +K R EV+ +
Sbjct: 1   MPTVDVVDLNNQVVSSVELADDVFGAEVNQSLLYEAVRQYQASLRAGTHATKVRREVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QKGTGRAR  S     +R G    GP P    + LPKK+   ALR ALS K   
Sbjct: 61  GKKLWKQKGTGRARIGSVRSPLWRHGATVHGPQPRDYAYKLPKKMLLGALRSALSAKVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++ V+ N    + KTK  +     L+    +++   + +RN +L  RN+  + LL  + 
Sbjct: 121 GELKVVQNFNFSDHKTKNAMGALSKLEAGRTVLVVDNEDNRNLELGIRNLKGVTLLATRE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N Y +L    +++S++A     +  
Sbjct: 181 VNPYHLLGHKSVLISEAAARKFSEAL 206


>gi|291286313|ref|YP_003503129.1| 50S ribosomal protein L4/L1e [Denitrovibrio acetiphilus DSM 12809]
 gi|290883473|gb|ADD67173.1| ribosomal protein L4/L1e [Denitrovibrio acetiphilus DSM 12809]
          Length = 208

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V+N+  E  G I +S++I +   +  ++  V+  Q   +R G   +  R+++   
Sbjct: 1   MATFDVKNVKNETVGTIDLSDEIMSYPVKSSLMHEVVIMQLANRRAGTHSTLNRAKMKGG 60

Query: 61  -GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G+K + QKGTGRAR  S+    +RGG   FGP P    +++PKK    AL+ A+  K  
Sbjct: 61  RGAKPWRQKGTGRARSGSRKSPIWRGGATCFGPQPRDYSYSMPKKKIKNALKSAIRAKTE 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +  + ++D L  +  KTK  V   +       ++I   +LD     A RNIP ++LL V 
Sbjct: 121 AGAVHILDALSVENGKTKEAVEILKNFAADRKVLIVFKELDDKAVCAFRNIPYVDLLDVN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+NVYD++    +++ K A+E +++  
Sbjct: 181 GLNVYDVINSRTILVCKDAVERIQEVL 207


>gi|56417002|ref|YP_154076.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries]
 gi|222475370|ref|YP_002563787.1| 50S ribosomal protein L4 (rplD) [Anaplasma marginale str. Florida]
 gi|81599118|sp|Q5PA59|RL4_ANAMM RecName: Full=50S ribosomal protein L4
 gi|254803710|sp|B9KJ69|RL4_ANAMF RecName: Full=50S ribosomal protein L4
 gi|56388234|gb|AAV86821.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries]
 gi|222419508|gb|ACM49531.1| 50S ribosomal protein L4 (rplD) [Anaplasma marginale str. Florida]
          Length = 208

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 112/205 (54%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++V N+  E  G + +S ++F ++ ++ +L  V+ WQ  ++R G  K++  S+V+ T 
Sbjct: 1   MEVNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGG   FGPV     ++L KKVR L L+ ALS K   +
Sbjct: 61  AKPYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+      KT      F       + ++     +     A RN+PN++LL   GI
Sbjct: 121 KLVVLDDSGLLLEKTADAHVAFGNFGAHGSYLVVAETYEDKVMCACRNLPNVDLLKYAGI 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV DILR   ++L+   ++ LE R 
Sbjct: 181 NVLDILRHDCVILTVGTVKCLESRL 205


>gi|257453270|ref|ZP_05618569.1| 50S ribosomal protein L4 [Fusobacterium sp. 3_1_5R]
 gi|257467135|ref|ZP_05631446.1| 50S ribosomal protein L4 [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918266|ref|ZP_07914506.1| LSU ribosomal protein L1E [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059804|ref|ZP_07924289.1| LSU ribosomal protein L1E [Fusobacterium sp. 3_1_5R]
 gi|313685480|gb|EFS22315.1| LSU ribosomal protein L1E [Fusobacterium sp. 3_1_5R]
 gi|313692141|gb|EFS28976.1| LSU ribosomal protein L1E [Fusobacterium gonidiaformans ATCC 25563]
          Length = 210

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 110/210 (52%), Gaps = 5/210 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ +L G   G + V+E +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNIYDLAGNQTGTVEVNEAVFGIEPNKTVLHEVLTAELAAARQGTAATKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176
           N I+V++  V +  KTK +V     +D     +     L    D N  L+ARN+ N  +L
Sbjct: 121 NQIVVLEGAV-EAPKTKTIVNLVNKIDAKQKQLFVVNDLTDVKDYNLYLSARNLENAVVL 179

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               I VY +L+  K++L+K A+  +E+  
Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEEVL 209


>gi|171741272|ref|ZP_02917079.1| hypothetical protein BIFDEN_00347 [Bifidobacterium dentium ATCC
           27678]
 gi|283455367|ref|YP_003359931.1| 50S ribosomal protein L4 [Bifidobacterium dentium Bd1]
 gi|306823567|ref|ZP_07456942.1| ribosomal protein L4/L1 family protein [Bifidobacterium dentium
           ATCC 27679]
 gi|309802989|ref|ZP_07697090.1| 50S ribosomal protein L4 [Bifidobacterium dentium JCVIHMP022]
 gi|171276886|gb|EDT44547.1| hypothetical protein BIFDEN_00347 [Bifidobacterium dentium ATCC
           27678]
 gi|283102001|gb|ADB09107.1| rplD 50S ribosomal protein L4 [Bifidobacterium dentium Bd1]
 gi|304553274|gb|EFM41186.1| ribosomal protein L4/L1 family protein [Bifidobacterium dentium
           ATCC 27679]
 gi|308220456|gb|EFO76767.1| 50S ribosomal protein L4 [Bifidobacterium dentium JCVIHMP022]
          Length = 221

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G+  G +    +IF      ++ +  ++ +V+  Q    R G   +K R  
Sbjct: 4   VTLNVTDKQGKAAGTVEAPAEIFGFSAEEVQSRIPLIHQVVVAQLAAARQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ AL++ LSD
Sbjct: 64  VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  + V+D  V++   TK  +     +  +    +   + + N  L+ RNIP ++ +
Sbjct: 124 RANAGHVAVVDFGVAEAPSTKAAIAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
               +N YD++    +V SK   +A 
Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209


>gi|282880999|ref|ZP_06289690.1| ribosomal protein L4/L1 family protein [Prevotella timonensis CRIS
           5C-B1]
 gi|281305222|gb|EFA97291.1| ribosomal protein L4/L1 family protein [Prevotella timonensis CRIS
           5C-B1]
          Length = 209

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 112/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N++G++ G  ++++E IF ++P   +L   ++     +R G +K+K RSE++ +
Sbjct: 1   MEVSVLNINGQETGRKVTLNESIFGIEPNDHVLYLDVKQYLANQRQGTAKTKERSELSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYGFKLNKKVKQLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  V   +         ++   ++++N  L+ARN+    ++   
Sbjct: 121 NSILVVEDFNLDAPKTKDFVNIAKNLKVDGRKTLLVLPEVNKNVYLSARNLQQAEVMTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    L++++++++A+++  
Sbjct: 181 TLNTYKVLNADVLIMTENSLKAIDEIL 207


>gi|21674997|ref|NP_663062.1| 50S ribosomal protein L4 [Chlorobium tepidum TLS]
 gi|46577274|sp|Q8KAH3|RL4_CHLTE RecName: Full=50S ribosomal protein L4
 gi|21648230|gb|AAM73404.1| ribosomal protein L4 [Chlorobium tepidum TLS]
          Length = 208

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N+ G + G + +++++IFA++  +  +   ++     +R G  K+K R+EV   
Sbjct: 1   MELKVLNIQGAETGEVVTLNDEIFAVEVSEHAMYLDVKAILANRRQGTHKAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S       GGG  FGP P      + +KV+ LA R ALS K  +
Sbjct: 61  GKKPFRQKGTGNARQGSTRSGLMVGGGAIFGPQPRTYDQKVNRKVKQLARRSALSAKAAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+D+   +  KT+ +    + L       ++     D     + RNI  +N++   
Sbjct: 121 GQIVVVDDFSFEAIKTRPVADMLKNLGLAEKKTLLMMPHHDNVVSTSGRNIEKLNVMVAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL    ++  K A++ +E+  
Sbjct: 181 QASTYDILNSQVVLFQKGALQKIEETL 207


>gi|119025340|ref|YP_909185.1| 50S ribosomal protein L4 [Bifidobacterium adolescentis ATCC 15703]
 gi|154486748|ref|ZP_02028155.1| hypothetical protein BIFADO_00573 [Bifidobacterium adolescentis
           L2-32]
 gi|166234637|sp|A1A070|RL4_BIFAA RecName: Full=50S ribosomal protein L4
 gi|118764924|dbj|BAF39103.1| 50S ribosomal protein L4 [Bifidobacterium adolescentis ATCC 15703]
 gi|154084611|gb|EDN83656.1| hypothetical protein BIFADO_00573 [Bifidobacterium adolescentis
           L2-32]
          Length = 221

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 100/206 (48%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G+  G +    +IF      ++ +  ++ +V+  Q    R G   +K R  
Sbjct: 4   VTLNVTDNQGKATGTVDAPAEIFGFSAEEVQSRIPLIHQVVIAQLAAARQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ AL++ LSD
Sbjct: 64  VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALKYVLSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  + V+D  VS+   TK  V     +  +    +   + + N  L+ RNIP ++ +
Sbjct: 124 RANAGHVAVVDFGVSEAPSTKAAVAALTPVTENKFTTVVLSRENVNEWLSVRNIPTVHPI 183

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
               +N YD++    +V SK   +A 
Sbjct: 184 FADQLNTYDVVTAQYVVFSKEGFDAF 209


>gi|257463962|ref|ZP_05628347.1| 50S ribosomal protein L4 [Fusobacterium sp. D12]
 gi|317061485|ref|ZP_07925970.1| LSU ribosomal protein L1E [Fusobacterium sp. D12]
 gi|313687161|gb|EFS23996.1| LSU ribosomal protein L1E [Fusobacterium sp. D12]
          Length = 210

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 110/210 (52%), Gaps = 5/210 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L++ +L G   G + V+E +F ++P + +L  VL  +    R G + +K R+ V   
Sbjct: 1   MAVLNIYDLAGNQTGTVEVNEAVFGIEPNKTVLHEVLTAELAAARQGTAATKTRAMVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG  FGP P      + KKVR+LALR ALS K  +
Sbjct: 61  GRKPFKQKGTGRARQGSIRAPHMVGGGVTFGPQPRSYEKKVNKKVRNLALRSALSAKVAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLL 176
           N+++V++    +  KTK +V     +D     +     L    D N  L+ARN+ N  +L
Sbjct: 121 NEVVVLEG-AIEAPKTKTIVNLVNKIDAKQKQLFVVNDLTDVKDYNLYLSARNLENAVVL 179

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               I VY +L+  K++L+K A+  +E+  
Sbjct: 180 QPNEIGVYWLLKQEKVILTKEALTTIEEVL 209


>gi|297181139|gb|ADI17336.1| hypothetical protein [uncultured Oceanospirillales bacterium
           HF0070_21F08]
          Length = 200

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 101/199 (50%), Gaps = 1/199 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL+    G ++VSE  F     + ++ +V+       R G    K R+ V+  G K + Q
Sbjct: 2   NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRAAVSGGGRKPWRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  +     +RGGGK F   P      + +K+   ALR   S+      ++V+D
Sbjct: 62  KGTGRARAGTIRSPLWRGGGKTFAAEPRDFSQKVNRKMYRGALRCIFSELVRQERLVVVD 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                  KTK + ++ + L+  ++++I   ++D N  LAARN+P +++    G++   ++
Sbjct: 122 EFNIDSPKTKQVASKLKDLE-LSSVLIVTSEVDENLYLAARNLPKVDIRDASGVDPVSLI 180

Query: 188 RCSKLVLSKSAIEALEDRF 206
              K++++  A++ LE+  
Sbjct: 181 AFEKVLVTVPALKQLEEAL 199


>gi|15676070|ref|NP_273201.1| 50S ribosomal protein L4 [Neisseria meningitidis MC58]
 gi|121634017|ref|YP_974262.1| 50S ribosomal protein L4 [Neisseria meningitidis FAM18]
 gi|161870914|ref|YP_001600094.1| 50S ribosomal protein L4 [Neisseria meningitidis 053442]
 gi|218767167|ref|YP_002341679.1| 50S ribosomal protein L4 [Neisseria meningitidis Z2491]
 gi|254805813|ref|YP_003084034.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha14]
 gi|304388944|ref|ZP_07370991.1| ribosomal protein L4/L1 family protein [Neisseria meningitidis ATCC
           13091]
 gi|46577147|sp|P61056|RL4_NEIMA RecName: Full=50S ribosomal protein L4
 gi|46577148|sp|P61057|RL4_NEIMB RecName: Full=50S ribosomal protein L4
 gi|166234693|sp|A1KRH4|RL4_NEIMF RecName: Full=50S ribosomal protein L4
 gi|189029510|sp|A9M3W5|RL4_NEIM0 RecName: Full=50S ribosomal protein L4
 gi|7225361|gb|AAF40601.1| 50S ribosomal protein L4 [Neisseria meningitidis MC58]
 gi|120865723|emb|CAM09452.1| 50S ribosomal protein L4 [Neisseria meningitidis FAM18]
 gi|121051175|emb|CAM07446.1| 50S ribosomal protein L4 [Neisseria meningitidis Z2491]
 gi|161596467|gb|ABX74127.1| 50S ribosomal protein L4 [Neisseria meningitidis 053442]
 gi|254669355|emb|CBA08442.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha14]
 gi|254670742|emb|CBA06975.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha153]
 gi|304337078|gb|EFM03265.1| ribosomal protein L4/L1 family protein [Neisseria meningitidis ATCC
           13091]
 gi|316985673|gb|EFV64619.1| ribosomal L4/L1 family protein [Neisseria meningitidis H44/76]
 gi|319411373|emb|CBY91784.1| 50S ribosomal protein L4 [Neisseria meningitidis WUE 2594]
 gi|325129062|gb|EGC51911.1| ribosomal protein L4 [Neisseria meningitidis N1568]
 gi|325133055|gb|EGC55727.1| ribosomal protein L4 [Neisseria meningitidis M6190]
 gi|325135149|gb|EGC57775.1| ribosomal protein L4 [Neisseria meningitidis M13399]
 gi|325139033|gb|EGC61579.1| ribosomal protein L4 [Neisseria meningitidis ES14902]
 gi|325141157|gb|EGC63657.1| ribosomal protein L4 [Neisseria meningitidis CU385]
 gi|325143233|gb|EGC65572.1| ribosomal protein L4 [Neisseria meningitidis 961-5945]
 gi|325145340|gb|EGC67617.1| ribosomal protein L4 [Neisseria meningitidis M01-240013]
 gi|325197430|gb|ADY92886.1| ribosomal protein L4 [Neisseria meningitidis G2136]
 gi|325199356|gb|ADY94811.1| ribosomal protein L4 [Neisseria meningitidis H44/76]
 gi|325203263|gb|ADY98716.1| ribosomal protein L4 [Neisseria meningitidis M01-240355]
 gi|325205236|gb|ADZ00689.1| ribosomal protein L4 [Neisseria meningitidis M04-240196]
          Length = 206

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G +SVS+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLSVSDALFAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLTRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  I+ L ++  KTK    + + L L   L +   QLD N  LA+RN+PN+ +L  Q 
Sbjct: 121 ERLFAIEALTAETPKTKVFAEQVKNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K++++K A+  LE+++
Sbjct: 180 VDPYSLLRYKKVIITKDAVAQLEEQW 205


>gi|88801218|ref|ZP_01116759.1| 50S ribosomal protein L4 [Reinekea sp. MED297]
 gi|88776056|gb|EAR07290.1| 50S ribosomal protein L4 [Reinekea sp. MED297]
          Length = 201

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 111/205 (54%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V N   +    + ++E  F  +  + ++ +V+       R G   +K RS VA  G
Sbjct: 1   MDIQVANAKSK----VELNEATFGNEFNEALVHQVVTAYMAGARQGTRATKNRSAVAGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     + GGG +F   P      + KK+   A++  LS+     
Sbjct: 57  AKPWRQKGTGRARAGTIRSPIWVGGGHSFARAPQDWSQKVNKKMYRGAMKSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++L   + KTK  + + + +D+SNA ++    +D+N  L+ARN+P++ +  V G+
Sbjct: 117 RLVVVEDLKFDKPKTKDFLAKMKEIDVSNA-LVVADDVDQNLYLSARNVPHVEVSDVAGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N  +++   K+V++ +AI  L++ F
Sbjct: 176 NPVNLVAYDKVVVTVAAINKLQEVF 200


>gi|172039996|ref|YP_001799710.1| 50S ribosomal protein L4 [Corynebacterium urealyticum DSM 7109]
 gi|226730646|sp|B1VET7|RL4_CORU7 RecName: Full=50S ribosomal protein L4
 gi|171851300|emb|CAQ04276.1| 50S ribosomal protein L4 [Corynebacterium urealyticum DSM 7109]
          Length = 225

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 101/203 (49%), Gaps = 1/203 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +L V   DG+  G + +   IF ++    ++ +V+  Q   KR G   +KGR EV   G 
Sbjct: 5   KLDVHTADGKTNGSVELPASIFDVEASVALMHQVVTAQLAAKRQGTHATKGRGEVRGGGR 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     F GGG   GP P       PKK+++ ALR ALSD+   + 
Sbjct: 65  KPFRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARHSR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI+ LV  +   TK   +    L     +++   + D   + +  N+PN++ LP   +
Sbjct: 125 IHVIEELVPGQIPSTKSARSFLERLTERKQILVVLTREDLTARKSVANLPNVHALPADQL 184

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N YD+L    +V S  A++A   
Sbjct: 185 NTYDVLHADDVVFSVEALDAFIK 207


>gi|87122972|ref|ZP_01078833.1| 50S ribosomal protein L4 [Marinomonas sp. MED121]
 gi|86161740|gb|EAQ63044.1| 50S ribosomal protein L4 [Marinomonas sp. MED121]
          Length = 201

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 102/200 (51%), Gaps = 2/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            NL G + G + VSE  FA +  + ++ +V+       R G    K RS+VA  G K + 
Sbjct: 3   LNLTGTE-GTLEVSEVTFAREYNEALVHQVVTAYLAGARQGTRAQKTRSDVAGGGRKPWK 61

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKG+GRAR  +     +R GG  F   P      + KK+   A+R   S+    + ++V+
Sbjct: 62  QKGSGRARAGTIRSPIWRSGGVTFAARPQDHSQKVNKKMYRAAMRTIWSELVRQDRLVVV 121

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           + L  +  KTK    +   L++ NA +I   +LD N  LAARNIPN+++     I+   +
Sbjct: 122 EELSLEAPKTKLFKAKMAELNIENA-LIVSAELDENLFLAARNIPNVDVRDAASIDPVSL 180

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++  A++ +E+  
Sbjct: 181 IAYDKVLVTVGALKQVEEAL 200


>gi|157826062|ref|YP_001493782.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford]
 gi|166199855|sp|A8GPE9|RL4_RICAH RecName: Full=50S ribosomal protein L4
 gi|157800020|gb|ABV75274.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford]
          Length = 207

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 123/207 (59%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G IS++EDIFA++  +  ++ +V+ WQ  +   G  K+K  SEV+ T
Sbjct: 1   MKTKILSLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP     V  LPKKVR L L HALS+KF  
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHVTKLPKKVRKLGLIHALSEKFAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT  LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 121 GRLLVIDSLKLDQPKTSALVNILSKFQGKSFFVIDGNEVDTNFSLAAKNIYNTAIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRYEYVLLSQEAVSVLEERLR 207


>gi|229818239|ref|ZP_04448521.1| hypothetical protein BIFANG_03537 [Bifidobacterium angulatum DSM
           20098]
 gi|229784490|gb|EEP20604.1| hypothetical protein BIFANG_03537 [Bifidobacterium angulatum DSM
           20098]
          Length = 219

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA---LKPQQG--ILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G   G +    +IF     + +    ++ +V+  Q    R G   +K R+ 
Sbjct: 4   VTLNVTDAKGAKTGTVEAPAEIFGFSAEEVRAHVPLIHQVVVAQLAAARQGTHATKTRAN 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ AL++ LSD
Sbjct: 64  VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGVVFGPQPRDYSQRTPKKMKAAALKYVLSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  ++ I V+D  V+    TK  V     +  +    +   + + N  L+ RNIP ++ +
Sbjct: 124 RANADRIAVVDFAVADAPSTKAAVAALTPITENKFTTVVLTRDNVNEWLSVRNIPTVHPI 183

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
            V  +N YD++    +V SK A EA 
Sbjct: 184 FVDQLNTYDVVTAQYVVFSKEAFEAF 209


>gi|163847924|ref|YP_001635968.1| 50S ribosomal protein L4/L1e [Chloroflexus aurantiacus J-10-fl]
 gi|222525804|ref|YP_002570275.1| 50S ribosomal protein L4/L1e [Chloroflexus sp. Y-400-fl]
 gi|163669213|gb|ABY35579.1| ribosomal protein L4/L1e [Chloroflexus aurantiacus J-10-fl]
 gi|222449683|gb|ACM53949.1| ribosomal protein L4/L1e [Chloroflexus sp. Y-400-fl]
          Length = 222

 Score =  182 bits (462), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 4/206 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ ++ N  GE  G I VS+ IF ++P   ++ + +  Q+   R+G   ++GR EV  + 
Sbjct: 1   MQATLYNQAGEQVGAIEVSDYIFGIEPNVAVMHQYVVMQNANARLGTHNTRGRGEVKGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRAR  S      +GGG A GP P     A+P+K+R L +R ALS KF ++
Sbjct: 61  RKLYRQKGTGRARQGSIRAPHHKGGGVAHGPHPRSYRLAMPRKMRRLGVRSALSAKFAAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL----DRNFQLAARNIPNINLLP 177
            I  +D L  +  +TK  +   +A  L++   +         + N + +A N+P +  L 
Sbjct: 121 QIRFVDELTFERPRTKDFIAFLKAHGLADKKTLVVIDSKSPANENLRRSANNLPQVKTLL 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203
              +NV D+L    +V+ K+A+E +E
Sbjct: 181 AHYLNVRDLLVYDHIVMPKAAVEVVE 206


>gi|218262296|ref|ZP_03476810.1| hypothetical protein PRABACTJOHN_02484 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223447|gb|EEC96097.1| hypothetical protein PRABACTJOHN_02484 [Parabacteroides johnsonii
           DSM 18315]
          Length = 209

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELSV N+ GED G  +++++ IF ++P    +   ++     +R G  KSK RSEV+ +
Sbjct: 1   MELSVLNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + AL+ K  +
Sbjct: 61  TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKGLARKSALTYKAKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  VT  +        L++   + +    L+ARN+   N++   
Sbjct: 121 NAIVVVEDFTLEAPKTKEFVTIAKNLKVADGKLLLVLSEKNNFVYLSARNLEKANVITAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L  + LVL++S++  +E  F
Sbjct: 181 ELNTYTVLNAANLVLTESSVAVIEKLF 207


>gi|90409446|ref|ZP_01217510.1| 50S ribosomal protein L4 [Psychromonas sp. CNPT3]
 gi|90309448|gb|EAS37669.1| 50S ribosomal protein L4 [Psychromonas sp. CNPT3]
          Length = 201

 Score =  182 bits (462), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VS+  F  +  + ++ +V+   +   R G    K RS+V+  G
Sbjct: 1   MELVLKDAQ----SALEVSDATFGREFNEALVHQVVVAYAAGARQGTRAQKNRSDVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     + GGG  F   P      + +K+   A+R  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGTIRSPIWVGGGVTFAARPQDHSQKVNRKMYRGAVRSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++N      KTK L  + + +DL +  +I   +LD N  LAARN+  +++  VQGI
Sbjct: 117 RLIVVENFTVSAPKTKELKAKLKEMDLKDV-LIITEELDENLFLAARNLYKVDVRDVQGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++ SA++ +E+  
Sbjct: 176 DPVSLIAFDKVVVTASAVKKIEESL 200


>gi|193211852|ref|YP_001997805.1| 50S ribosomal protein L4 [Chlorobaculum parvum NCIB 8327]
 gi|226730637|sp|B3QR77|RL4_CHLP8 RecName: Full=50S ribosomal protein L4
 gi|193085329|gb|ACF10605.1| ribosomal protein L4/L1e [Chlorobaculum parvum NCIB 8327]
          Length = 208

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N+ G + G + ++++DIFA++  +  +   ++     +R G  K+K R+EV   
Sbjct: 1   MELKVLNIQGAETGEVVTLNDDIFAVEVSEHAMYLDVKAILANRRQGTHKTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  S       GGG  FGP P      + +KV+ LA R ALS K  +
Sbjct: 61  GKKPYRQKGTGNARQGSSRSPIMVGGGTIFGPQPRSYEQKVNRKVKQLARRSALSSKAAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++   +  KT+ +    + L       ++     D     + RNI  +N+    
Sbjct: 121 GQIVVVEDFSLESIKTRPVADMLKNLGLAEKKTLLMMPHYDNVVSTSGRNIEKLNIQVAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL    ++  K+A++ +E+  
Sbjct: 181 QASTYDILNSQAVLFQKAALQKIEETL 207


>gi|95931441|ref|ZP_01314147.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684]
 gi|95132509|gb|EAT14202.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684]
          Length = 206

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V ++         ++E +F  + +  ++  ++R+Q   +R G S  K R+ VA  
Sbjct: 1   MAKVTVYDMQKNQVSERELNEVVFDAEVRPYLVHDMVRYQLAARRQGTSACKNRAAVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  + +     GGG AFGP P      L +KV+ LAL  ALS +F  
Sbjct: 61  GKKPFKQKGTGNARQGTVTAPNHVGGGVAFGPTPRNYAFKLNRKVKKLALCSALSSRFQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+  L      TK         +L +AL++         +L+ARN+ N+ +L   G
Sbjct: 121 QKLTVLSELKLDSISTKSFKQVVDRFELKDALVVIDAANPE-VELSARNLRNVKVLRADG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+++ S LVL++ A+E LE   
Sbjct: 180 VNVYDVMKYSNLVLTEGAVEQLEGAL 205


>gi|307110022|gb|EFN58259.1| hypothetical protein CHLNCDRAFT_142203 [Chlorella variabilis]
          Length = 322

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 8/212 (3%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + + +L  +  G +++  DIF +  ++ IL RV+RWQ  +++ G  K+K RSEV   G K
Sbjct: 101 VPLYDLSRQPVGTVTLGGDIFDVPIRRDILHRVVRWQLAKRQQGTHKTKTRSEVRGGGRK 160

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
              QKG+GR+R  +    Q+RGGG A GPVP    H LPK+VR L L+ ALS K     +
Sbjct: 161 PRPQKGSGRSRQGTIRAPQWRGGGVAHGPVPRSHEHDLPKRVRRLGLQCALSAKAWERRL 220

Query: 124 MVIDNLVSKECKTKYLVT----RFRALDLSNALIID----GCQLDRNFQLAARNIPNINL 175
           +V+D+L   E KTK ++             + L+ D    G       +  A N+P ++ 
Sbjct: 221 LVVDSLQPAEPKTKVMLDNVDALLADAPRRSVLLCDSSKLGEDGGEVLRRTAANLPWVDC 280

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           +P QG+NVY IL+   LVL+K A++ L +R +
Sbjct: 281 IPQQGLNVYSILQRDYLVLTKRAVDLLMERLR 312


>gi|317485821|ref|ZP_07944685.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia
           3_1_6]
 gi|316922927|gb|EFV44149.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia
           3_1_6]
          Length = 206

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V + D  ++G ++++ ++F +  +  IL  V+R Q   KR G   +K R+ V+  
Sbjct: 1   MAVVKVYDQDKTEQGELTLTPEVFEVAVRPEILHLVVRAQLAAKRAGTHSTKTRAMVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P      + KK+R LALR ALS +   
Sbjct: 61  GVKPWRQKGTGRARAGSNRSPVWRGGAILFGPQPRKYDFKVNKKIRKLALRMALSSRLAG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+      E KTK    +       +  +I   +  RN  L++RN+P I L     
Sbjct: 121 DNLLVVKGFDLPEAKTKVF-AKIAGNLGLSKALIIAPEESRNLVLSSRNLPGITLTTPDQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++VY+IL+  +LVL + A+E +E R K
Sbjct: 180 LSVYEILKHKQLVLLEGAVEPVETRLK 206


>gi|284929562|ref|YP_003422084.1| 50S ribosomal protein L4P [cyanobacterium UCYN-A]
 gi|284810006|gb|ADB95703.1| LSU ribosomal protein L4P [cyanobacterium UCYN-A]
          Length = 210

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++ +V+N  GE  G ++++  +   +    +L R +       R G + SK R+EV   
Sbjct: 1   MVDCNVKNWQGELVGQVTLNLKVAKEESSAHLLHRAVVRHLANARQGNACSKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A+S +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSLKMNRKERRLALRTAISSRIED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPV 178
             I+        + KTK+         + +   +     + D N  L+ RN+  + +L  
Sbjct: 121 LIIVKDFIEQFPDPKTKHFTAALTRWGVESRKKVALILLETDNNIYLSVRNLSYVKILRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +N+YD+L   K+V++  A+  +++ +
Sbjct: 181 DSLNIYDLLNADKIVMTSEALVKIQEVY 208


>gi|319944794|ref|ZP_08019058.1| 50S ribosomal protein L4 [Lautropia mirabilis ATCC 51599]
 gi|319742043|gb|EFV94466.1| 50S ribosomal protein L4 [Lautropia mirabilis ATCC 51599]
          Length = 206

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++ N  G+  G +SV + +F     + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELNILNDQGQKAGAVSVVDTVFGTDFNEPLIHQIVVAYQANARSGNRAQKDRTEVRHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + +K+    +R  LS     
Sbjct: 61  KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNKPDENFSQKVNRKMYRAGMRSILSQLVRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V+++L  +  KTK LV +   + L + LI+   + D N  LAARN+P++ +L  + 
Sbjct: 121 DRLSVVESLKLEAPKTKLLVGKLNGMGLKSTLIVVDNE-DENLYLAARNLPHVLVLETRH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+   ++    ++++K A+  +++  
Sbjct: 180 IDPLSLVHYDNVLVTKQALAQIQEML 205


>gi|119511178|ref|ZP_01630295.1| 50S ribosomal protein L4 [Nodularia spumigena CCY9414]
 gi|119464166|gb|EAW45086.1| 50S ribosomal protein L4 [Nodularia spumigena CCY9414]
          Length = 212

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 4/210 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+E  V+N  GE  G  +    +        I+ R L  Q    R G + +K RSEV   
Sbjct: 1   MVESVVKNWQGEQVGETTFELRVAKESTASHIVHRALVRQMTNSRQGTASTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      L +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYNQKLNRKERRLALRTAFVSRADD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL----DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
             ++   +      KTK LV          +    LI+     + N  L+ARNI N+ L+
Sbjct: 121 LIVVQDFSNELSRPKTKELVAALARWGAAPENKALLIMPIISSEDNVYLSARNIQNLKLI 180

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               +NVYD+L   K+V++ SA+  +++ +
Sbjct: 181 AADQLNVYDLLHADKIVITASALAKIQEVY 210


>gi|67923584|ref|ZP_00517056.1| Ribosomal protein L4/L1e [Crocosphaera watsonii WH 8501]
 gi|67854554|gb|EAM49841.1| Ribosomal protein L4/L1e [Crocosphaera watsonii WH 8501]
          Length = 210

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++ +V+N  GE+ G  ++   +   +    +L R +       R G + SK R+EV   
Sbjct: 1   MVDCNVKNWQGEEVGQATLELKVAKEESASHLLHRAVVRHLANARQGNASSKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A++ +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSKKMNRKERRLALRTAIASRVED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPV 178
             ++        + KTK L +      +  +  +     +   N  L+ARN+  + +L  
Sbjct: 121 MIVVENFTEQLPQPKTKELASALARWGVEPSEKVALVLLEAGDNIYLSARNLCFVKILRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   K+V++  ++  +++ +
Sbjct: 181 DSLNVYDLLNADKIVITSESLSKIQEVY 208


>gi|110180284|gb|ABG54385.1| 23S ribosomal protein L4 [Brucella ceti]
          Length = 188

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/206 (51%), Positives = 141/206 (68%), Gaps = 18/206 (8%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++         
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQ--------- 51

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
                    GRARH S    QFRGGG+A GPV     H LPKKV +L LRHALS K  ++
Sbjct: 52  ---------GRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 102

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 103 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 162

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 163 NVYDILRRGKLVLSKAAVEALEERFK 188


>gi|225024791|ref|ZP_03713983.1| hypothetical protein EIKCOROL_01678 [Eikenella corrodens ATCC
           23834]
 gi|224942498|gb|EEG23707.1| hypothetical protein EIKCOROL_01678 [Eikenella corrodens ATCC
           23834]
          Length = 206

 Score =  182 bits (461), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 105/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+  G ++ S+ +FA +  + ++ +++       R G      R+EV ++ 
Sbjct: 1   MELKVIDAKGQVSGSLAASDALFAREYNEALVHQLVTAFLANARSGNRAQLTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRTFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VI+ L     KTK    + + L +   L +   QLD N  L++RN+PN+ +L  Q 
Sbjct: 121 ERLFVIEELSVATPKTKAFAEQVKNLGMEQVLFV-TNQLDENVYLSSRNLPNVLVLEAQQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+ Y +LR  K+V++K A+  LE+++
Sbjct: 180 IDPYSLLRYKKVVVTKEAVAQLEEQW 205


>gi|149376684|ref|ZP_01894443.1| Ribosomal protein L4 [Marinobacter algicola DG893]
 gi|149359057|gb|EDM47522.1| Ribosomal protein L4 [Marinobacter algicola DG893]
          Length = 201

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 103/200 (51%), Gaps = 2/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
             + G  KG ISVS+  FA    + ++ +V+       R G    K RSEVA  G K + 
Sbjct: 3   LTITGSGKG-ISVSDAAFAKDFNESLVHQVVTAYMSGARQGTRAQKTRSEVAGGGKKPWR 61

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +R GG  F   P      + +K+   A+R   S+      ++V+
Sbjct: 62  QKGTGRARAGTIRSPLWRSGGVTFAAKPQSFEQKVNRKMYRAAMRSIFSELVRQERLVVV 121

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           D++  +  KTK    +   + +SNA +I    +++N  LA+RNIP++++  V G++   +
Sbjct: 122 DDMNVETPKTKAFTAKLSDIGVSNA-LILSDNVEQNLHLASRNIPHVDVRDVAGLDPVSL 180

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K+V++  A++ +E+  
Sbjct: 181 VAFDKVVVTVPALKKIEEML 200


>gi|87199271|ref|YP_496528.1| 50S ribosomal protein L4 [Novosphingobium aromaticivorans DSM
           12444]
 gi|109893614|sp|Q2G8X9|RL4_NOVAD RecName: Full=50S ribosomal protein L4
 gi|87134952|gb|ABD25694.1| LSU ribosomal protein L4P [Novosphingobium aromaticivorans DSM
           12444]
          Length = 207

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 91/207 (43%), Positives = 126/207 (60%), Gaps = 4/207 (1%)

Query: 2   IELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++ V NLDG   KG + +S+D+F L+P+  IL RV+ WQ   +R    K++ RS+VA T
Sbjct: 1   MKVQVLNLDGTAGKGEVELSDDVFGLEPRADILHRVVTWQLENRRGIARKARERSDVART 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K   QKG G ARH  +    F GGGKA GP       +L KKVR+L L+ ALS K  +
Sbjct: 61  GKKFGRQKGGGTARHGDRKAPIFIGGGKAHGPRVREFNISLNKKVRALGLKMALSSKAKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             ++V +  V  + KTK LV +  +A      L+IDG  ++ NF  AARNI  +N+LP  
Sbjct: 121 GLVVVDNLDV--DAKTKALVGQLAKANWGKKVLVIDGEGVNDNFAKAARNIVGVNVLPAI 178

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G NVYDIL+   LVL+++A+E LE RF
Sbjct: 179 GANVYDILKHDTLVLTRAAVEKLEARF 205


>gi|93005315|ref|YP_579752.1| 50S ribosomal protein L4 [Psychrobacter cryohalolentis K5]
 gi|109893625|sp|Q1QDI5|RL4_PSYCK RecName: Full=50S ribosomal protein L4
 gi|92392993|gb|ABE74268.1| LSU ribosomal protein L4P [Psychrobacter cryohalolentis K5]
          Length = 200

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 100/202 (49%), Gaps = 4/202 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
            ++ + G     + +S+  F  +  + ++ +V+       R G    K R+EV+  G K 
Sbjct: 2   DLKTVTGAA---VELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGIKP 58

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     +RGGG+AF   P      + +K+   A++  L++      ++
Sbjct: 59  WRQKGTGRARAGSIRSPIWRGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQERLI 118

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           +++ +     KTK L+ +      ++  +I   ++D N  LAARNIP++N+L    ++  
Sbjct: 119 LVEEISVSGPKTKELIAKLGE-LNASRALIVTKEVDENLYLAARNIPHVNVLDTSEVDPV 177

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            ++   K++++  A +  E+  
Sbjct: 178 SLIAFDKVIMTVEAAKQFEEAL 199


>gi|294789224|ref|ZP_06754463.1| ribosomal protein L4/L1 family protein [Simonsiella muelleri ATCC
           29453]
 gi|294482965|gb|EFG30653.1| ribosomal protein L4/L1 family protein [Simonsiella muelleri ATCC
           29453]
          Length = 206

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+  G ++ S+ +FA +  + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MELKLINAQGQVSGSVAGSDALFAREYNEALVHQLVTAYLANARSGNRAQKTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VI+NL +   KTK    + + L L   L I   QLD N  L++RN+PN+ +L    
Sbjct: 121 ERLFVIENLSAATPKTKEFADQVKNLGLEQVLFI-TKQLDENVYLSSRNLPNVLVLEATQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            + Y +LR  K+VL+K A+  LE+++
Sbjct: 180 ADPYSLLRYKKVVLTKEAVAQLEEQW 205


>gi|218885188|ref|YP_002434509.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226730654|sp|B8DN97|RL4_DESVM RecName: Full=50S ribosomal protein L4
 gi|218756142|gb|ACL07041.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 206

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V + + ++ G ++++ ++F ++ +  IL  V+R      R G   +K R+ V+  
Sbjct: 1   MAVVKVYDQNKKEAGELTLAPEVFEVEVKPEILNLVVRAHRAGLRSGTHATKTRAFVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S     +RGG   FGP P      + KKVR LAL+ ALS +   
Sbjct: 61  GAKPWRQKGTGRARSGSNRSPIWRGGAVIFGPQPREYGFKVNKKVRQLALKMALSSRLAG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++MV+  +   E KTK L  +          ++   + D    L+ARNIP I L+    
Sbjct: 121 ENLMVVKGIELPEIKTK-LFAKVAGALGLEKALVITAEADTTLALSARNIPGITLITADQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++VY+IL+  KLV+ + A+E+++ R K
Sbjct: 180 LSVYEILKHPKLVMFEGAVESVQARLK 206


>gi|307297393|ref|ZP_07577199.1| ribosomal protein L4/L1e [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916653|gb|EFN47035.1| ribosomal protein L4/L1e [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 227

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 19/225 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V N+ G+  G + +SE +F ++P + ++ R +  Q   +R G + +K RSEV   
Sbjct: 1   MAQADVVNIAGQKVGTVELSESVFNVEPNEDLMFRYVNMQLSGRRAGLASAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     +R GG   GP P      L KK++ +ALR ALS +   
Sbjct: 61  GRKPWAQKHTGRARVGSTRSPLWRHGGVIHGPKPKDWSMKLTKKMKKVALRSALSLRLKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA---LDLSNALIIDGCQLDRN--FQLAARNIPNINL 175
            +++V+D+L     KTK L               L +   Q D     +L+ +NI  + +
Sbjct: 121 GNLIVLDDLKFDRPKTKQLREVLNNLGLDKTQKTLFVLPWQKDEYQNVRLSGKNIYGVKV 180

Query: 176 L--------------PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +               + G+NVYDI+   KLV++   +  +E+  
Sbjct: 181 IIADNPGNKAVNSKENIDGLNVYDIVNHEKLVITADLVRKIEEVL 225


>gi|300728442|ref|ZP_07061804.1| ribosomal protein, L4/L1 family [Prevotella bryantii B14]
 gi|299774361|gb|EFI70991.1| ribosomal protein, L4/L1 family [Prevotella bryantii B14]
          Length = 209

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 112/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V ++ G++ G  +++++ IF ++P   +L   ++     +R G +KSK RSE++ +
Sbjct: 1   MEVNVLDIKGQETGRKVTLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + AL+ K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYRFKLNKKVKVLARKSALTYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   +     +   ++   ++++N  L+ARN+   N+    
Sbjct: 121 NAIVVVEDFNFEAPKTKDFVNIAKNLKVDNKKALVVLPEVNKNVYLSARNLKKANVETAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN Y +L    LV+S+S++E +E   
Sbjct: 181 SINAYKVLNADVLVISESSLETIESIL 207


>gi|255554769|ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus communis]
 gi|223542267|gb|EEF43809.1| 50S ribosomal protein L4, putative [Ricinus communis]
          Length = 294

 Score =  181 bits (460), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/203 (36%), Positives = 118/203 (58%), Gaps = 1/203 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   EDKG + ++ D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 85  IPVTNFLNEDKGFMVLAGDVFDVPIKKHIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 144

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QKGTGRARH +    QFRGG    GP P        KKVR L L+ AL+ +     +
Sbjct: 145 PYRQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKCNKKVRRLGLKIALTARAAEGKL 204

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +V ++L     KTK +V   + ++ +   L++DG  ++   +LAA+N+  +N+LP  G+N
Sbjct: 205 LVFEDLEIPTHKTKNIVNYVKQMEETKKLLLVDGGPINEKLKLAAQNLHYVNVLPSIGLN 264

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VY IL    LV+S+ A+  + +R
Sbjct: 265 VYSILLHDTLVMSRDAVNRIVER 287


>gi|302772867|ref|XP_002969851.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]
 gi|300162362|gb|EFJ28975.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]
          Length = 215

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 121/204 (59%), Gaps = 1/204 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L V N + EDKG ++++ DIF +  ++ I+  V++WQ  ++R G   +K R EVA +  K
Sbjct: 6   LPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRK 65

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           ++ QKGTG+ARH S+   QFRGGG A GP P    + L KKVR L L+ ALS +     +
Sbjct: 66  IHKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAERKL 125

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182
           M+ DN+     KT+ L+     L     LI+DG +   R   LA RN+  +N++P +G+N
Sbjct: 126 MLFDNVDLPTHKTRQLMKLVPNLGCRRVLIVDGVEKMGREITLACRNVKEVNVIPAKGLN 185

Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206
           VY IL    LV+S +A+  +EDR 
Sbjct: 186 VYSILLHDTLVMSVAAVREIEDRL 209


>gi|326793559|ref|YP_004311379.1| ribosomal protein L4/L1e [Marinomonas mediterranea MMB-1]
 gi|326544323|gb|ADZ89543.1| ribosomal protein L4/L1e [Marinomonas mediterranea MMB-1]
          Length = 201

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 2/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            NL G + G + VS+  FA +  + ++ +V+       R G    K RSEVA  G K + 
Sbjct: 3   LNLTGAE-GTVEVSDVTFAREYNEALVHQVVTAYLAGARQGTRAQKTRSEVAGGGRKPWK 61

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKG+GRAR  +     +R GG  F   P      + KK+   ALR   S+    + ++V+
Sbjct: 62  QKGSGRARAGTIRSPLWRSGGVTFAAKPQDHSQKVNKKMYRAALRTIWSELARKDRLVVV 121

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           + L     KTK    +   L++ NA ++    LD N  LAARNIPN+ +     I+   +
Sbjct: 122 EELKIDAPKTKLFKAKMAELNVENA-LVVSHDLDDNLFLAARNIPNVGVCDAASIDPVSL 180

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++  A++ +E+  
Sbjct: 181 IAYDKVLVTVGALKQVEEAL 200


>gi|149928570|ref|ZP_01916794.1| ribosomal protein L4/L1 family [Limnobacter sp. MED105]
 gi|149822711|gb|EDM81974.1| ribosomal protein L4/L1 family [Limnobacter sp. MED105]
          Length = 206

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V +  G+    + VS+ +F  +  + ++ +++       R G  + K RSEV  + 
Sbjct: 1   MELKVISDSGQASQTVQVSDVVFGREYNEPLIHQLVVAYQANARQGTRQQKDRSEVRAST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  + S   +RGGGK F   P       L KK+    +   LS     
Sbjct: 61  RKPWKQKGTGRARAGAVSSPLWRGGGKTFPNSPDENFTQKLNKKMFRAGVCSILSQLSRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+++L  +  KTK L  + + + L + L+I    +D N  LA+RN+PN+ ++  + 
Sbjct: 121 GRLVVVESLDLEAPKTKLLDQKLKGMGLDSVLMIVDS-VDENLYLASRNLPNVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K+V +++AI+ L++ +
Sbjct: 180 ADPLSLIYFKKVVATRAAIDKLQEMY 205


>gi|53715465|ref|YP_101457.1| 50S ribosomal protein L4 [Bacteroides fragilis YCH46]
 gi|60683437|ref|YP_213581.1| 50S ribosomal protein L4 [Bacteroides fragilis NCTC 9343]
 gi|253566671|ref|ZP_04844124.1| 50S ribosomal protein L4 [Bacteroides sp. 3_2_5]
 gi|255011647|ref|ZP_05283773.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12]
 gi|265767549|ref|ZP_06095215.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_16]
 gi|313149483|ref|ZP_07811676.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12]
 gi|81313515|sp|Q5L8B0|RL4_BACFN RecName: Full=50S ribosomal protein L4
 gi|81608233|sp|Q64NK9|RL4_BACFR RecName: Full=50S ribosomal protein L4
 gi|52218330|dbj|BAD50923.1| 50S ribosomal protein L4 [Bacteroides fragilis YCH46]
 gi|60494871|emb|CAH09678.1| putative 50S ribosomal protein L4 [Bacteroides fragilis NCTC 9343]
 gi|251944843|gb|EES85318.1| 50S ribosomal protein L4 [Bacteroides sp. 3_2_5]
 gi|263252854|gb|EEZ24366.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_16]
 gi|301164922|emb|CBW24483.1| putative 50S ribosomal protein L4 [Bacteroides fragilis 638R]
 gi|313138250|gb|EFR55610.1| 50S ribosomal protein L4 [Bacteroides fragilis 3_1_12]
          Length = 208

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K   
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKTLARKSALSYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI   N+  + 
Sbjct: 121 NAIVVVEDFNFEAPKTKVFVEMTKNLKVSDKKLLVVLPEANKNVYLSARNIEGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++S+++A+++  
Sbjct: 181 GLNTYRVLNAGVVVLTESSLKAIDNIL 207


>gi|304391027|ref|ZP_07372979.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325910|gb|EFL93156.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 214

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 2/201 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + + +  G+  G + +  ++F L     ++ +V+  Q    R G   +K R +V+  G K
Sbjct: 7   VDIFDGVGKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  I
Sbjct: 67  PWRQKGTGRARQGSIRAPQFAGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRI 126

Query: 124 MV-IDNLVSKECKTKYLVTRFRALDLSNALIID-GCQLDRNFQLAARNIPNINLLPVQGI 181
            V  D  V +   TK      + +  +   +I    ++D    L+  N+   + L V  +
Sbjct: 127 HVLSDFGVKETPSTKAAKAALQGVVDNRRALIVLTPEVDDVVALSVNNLSEHHALFVGEL 186

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S +A+++ 
Sbjct: 187 NTYDVLANDDVVFSATALDSF 207


>gi|302523994|ref|ZP_07276336.1| ribosomal protein L4/L1 [Streptomyces sp. AA4]
 gi|302432889|gb|EFL04705.1| ribosomal protein L4/L1 [Streptomyces sp. AA4]
          Length = 229

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + ++   G+  G + +  +IF ++    ++ +V+  Q    R G   +K R EV+  
Sbjct: 1   MTSVELKTPAGKADGTVELPGEIFDVQANVALMHQVVVGQLAAARQGTHDTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYTQRTPKKMKAAALRGALSDRARA 120

Query: 121 NDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             +  V + +  ++  TK   T   A   +  +++   + +    ++ARN+P ++L+   
Sbjct: 121 GQLHVVTELVTGEKPSTKAAKTAIAAATQAKRVLVVLHRDEELAWVSARNLPYVHLIWAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V +K+A +A 
Sbjct: 181 QLNTYDVLVNDDVVFTKAAYDAF 203


>gi|152998270|ref|YP_001343105.1| 50S ribosomal protein L4 [Marinomonas sp. MWYL1]
 gi|189029508|sp|A6W391|RL4_MARMS RecName: Full=50S ribosomal protein L4
 gi|150839194|gb|ABR73170.1| ribosomal protein L4/L1e [Marinomonas sp. MWYL1]
          Length = 201

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 2/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            NL G + G + VS+  FA +  + ++ +V+       R G    K RSEVA  G K + 
Sbjct: 3   LNLTGAE-GTVEVSDVAFAREYNEALVHQVVTSYLAGARQGSRAQKTRSEVAGGGRKPWK 61

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKG+GRAR  +     +R GG  F   P      + KK+   A+R   S+    + ++V+
Sbjct: 62  QKGSGRARAGTIRSPLWRSGGVTFAAKPQDHSQKVNKKMYRAAMRTIWSELVRQDRLVVV 121

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           ++L  +  KTK  + +   L++ NA +I    LD N  LAARNIPN+++     I+   +
Sbjct: 122 EDLKLEAPKTKLFIAKMAELNIENA-LIVSHDLDDNLFLAARNIPNVDVRDAASIDPVSL 180

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++  A++ +E+  
Sbjct: 181 IAYDKVLVTVGALKQVEEAL 200


>gi|158520726|ref|YP_001528596.1| ribosomal protein L4/L1e [Desulfococcus oleovorans Hxd3]
 gi|226730653|sp|A8ZV58|RL4_DESOH RecName: Full=50S ribosomal protein L4
 gi|158509552|gb|ABW66519.1| ribosomal protein L4/L1e [Desulfococcus oleovorans Hxd3]
          Length = 205

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/206 (37%), Positives = 120/206 (58%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + ++N++GE      + + IF ++ +  +L  V++ Q  R+R G + +KGRS+VA +
Sbjct: 1   MAVVDIKNMNGETVSQAELPDSIFDVEVKSSVLHEVVKMQLARRRSGTASTKGRSDVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
            +K++ QKGTGRAR         +GGG  FGP P    +++PKKVR LAL+ AL+ K   
Sbjct: 61  RAKLFRQKGTGRARRGDVKSPLLKGGGVVFGPHPRSFDYSVPKKVRKLALKMALTSKLRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V+D       KTK  V    AL  +NAL+I         + +ARN+P + +L  +G
Sbjct: 121 NTLTVVDQFRFDRIKTKDFVGAINALGAANALVI--SDGSETLEKSARNVPKVKVLKCEG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+   LVL ++AI+ +E R 
Sbjct: 179 LNVYDILKYKNLVLPEAAIKMIEGRL 204


>gi|85713374|ref|ZP_01044383.1| 50S ribosomal protein L4 [Idiomarina baltica OS145]
 gi|85692802|gb|EAQ30791.1| 50S ribosomal protein L4 [Idiomarina baltica OS145]
          Length = 201

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++  G     + VSE  F  +  + ++ +V+   +   R G    K RSEVA  G
Sbjct: 1   MELTLKDAKGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTKAQKTRSEVAGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGTIRSPIWRSGGTTFAAKPQNHEQKVNKKMYRGAVKSILSELIRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V++N   +  KTK LV + + L+L++  +I   ++D N  LA+RN+  +++  VQGI
Sbjct: 117 RLQVVENFELEAPKTKQLVAKLKELNLNDV-LIVTKEVDENLFLASRNLHKVDVRDVQGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    ++++  A++ LE+  
Sbjct: 176 DPVSLIAFENVLMTADAVKQLEEVL 200


>gi|258406184|ref|YP_003198926.1| 50S ribosomal protein L4 [Desulfohalobium retbaense DSM 5692]
 gi|257798411|gb|ACV69348.1| ribosomal protein L4/L1e [Desulfohalobium retbaense DSM 5692]
          Length = 206

 Score =  181 bits (459), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 107/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +   +  G +++S ++F  + +  IL +V+R Q   KR G    K RS +   
Sbjct: 1   MPVVQIVDKSNQAVGEVTLSSEVFEREVRAEILHQVVRSQLAAKRRGTVGVKTRSLIRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     + GG    GP        + KKV+ LAL+ A+S +   
Sbjct: 61  GRKPWRQKGTGRARAGTVRSPIWTGGAIVHGPQARDYDIKVNKKVKRLALKMAMSSRLAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++V+D++  +E KTK    + +        +I   + D   +L+ARNIP + ++    
Sbjct: 121 DNLVVVDSVTPEEVKTKSF-RKIQEQLDLKKCLIVTAEKDNTLELSARNIPGVTVMTWDN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N +D+L   +LVL   A+E +E++ 
Sbjct: 180 LNTFDVLNHDQLVLEAKAVEKIEEKL 205


>gi|84494785|ref|ZP_00993904.1| 50S ribosomal protein L4 [Janibacter sp. HTCC2649]
 gi|84384278|gb|EAQ00158.1| 50S ribosomal protein L4 [Janibacter sp. HTCC2649]
          Length = 331

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 1/187 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +  +IF ++    ++ +V+  Q    R G   +K R EV   G K + QKGTGRAR  
Sbjct: 11  VDLPAEIFDVQTNIPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGRKPHRQKGTGRARAG 70

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECK 135
           S     + GGG   GP P       PKK+++ ALR ALSD+     I V+ +LV      
Sbjct: 71  STRAPHWTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARHGRIHVVASLVQGDAPS 130

Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           TK  V     L     +++   + D     + RN+ N++++    +N YD+L    +V +
Sbjct: 131 TKEAVALLAGLTERKNMLVVLDRSDIVSLKSVRNLENLHVIVADQLNTYDVLCADDVVFT 190

Query: 196 KSAIEAL 202
           ++A +A 
Sbjct: 191 QAAFDAF 197


>gi|71065060|ref|YP_263787.1| 50S ribosomal protein L4 [Psychrobacter arcticus 273-4]
 gi|109893624|sp|Q4FUF5|RL4_PSYA2 RecName: Full=50S ribosomal protein L4
 gi|71038045|gb|AAZ18353.1| LSU ribosomal protein L4P [Psychrobacter arcticus 273-4]
          Length = 200

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 4/202 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
            ++ + G     + +S+  F  +  + ++ +V+       R G    K R+EV+  G K 
Sbjct: 2   DLKTVTGAA---VELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGIKP 58

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     +RGGG+AF   P      + +K+   A++  L++      ++
Sbjct: 59  WRQKGTGRARAGSIRSPIWRGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQERLI 118

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           +++ +     KTK L+ +   L  +   +I   ++D N  LAARNIP++N+L    ++  
Sbjct: 119 LVEEISVSGPKTKELIAKLNELG-APRALIVTKEVDENLYLAARNIPHVNVLDTSEVDPV 177

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            ++   K+++S  A +  E+  
Sbjct: 178 SLIAFDKVIMSVEAAKQFEEAL 199


>gi|298345471|ref|YP_003718158.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063]
 gi|315656194|ref|ZP_07909085.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|298235532|gb|ADI66664.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063]
 gi|315493196|gb|EFU82796.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 214

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 2/201 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + + +  G+  G + +  ++F L     ++ +V+  Q    R G   +K R +V+  G K
Sbjct: 7   VDIFDGVGKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  I
Sbjct: 67  PWRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRI 126

Query: 124 MV-IDNLVSKECKTKYLVTRFRALDLSNALIID-GCQLDRNFQLAARNIPNINLLPVQGI 181
            V  D  V +   TK      + +  S   +I    ++D    L+  N+   + L V  +
Sbjct: 127 HVLSDFGVKETPSTKAAKAALQGVVDSRRALIVLTPEVDDVVALSVNNLSEHHALFVGEL 186

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S +A+++ 
Sbjct: 187 NTYDVLANDDVVFSATALDSF 207


>gi|308047992|ref|YP_003911558.1| 50S ribosomal protein L4P [Ferrimonas balearica DSM 9799]
 gi|307630182|gb|ADN74484.1| LSU ribosomal protein L4P [Ferrimonas balearica DSM 9799]
          Length = 201

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 109/205 (53%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F  +  + ++ +V+   +   R G    K R+EV  TG
Sbjct: 1   MELVMKDAQ----SALEVSETTFGREFNEALVHQVVVAYAANARQGTRAQKTRAEVTGTG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG +F   P      + KK+   ALR  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGTVKSPIWRSGGVSFAAKPQDHGQKVNKKMYRAALRSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + L+L++ LI+ G ++D N  LA+RN+  +++    GI
Sbjct: 117 RLIVVEKFAVEAPKTKELVGKLKELELNDVLIVTG-EVDENLFLASRNLYKVDVRDADGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E++ 
Sbjct: 176 DPVSLIAFDKVLMTADAVKQIEEKL 200


>gi|34499640|ref|NP_903855.1| 50S ribosomal protein L4 [Chromobacterium violaceum ATCC 12472]
 gi|46577180|sp|Q7NQF3|RL4_CHRVO RecName: Full=50S ribosomal protein L4
 gi|34105490|gb|AAQ61845.1| 50S ribosomal protein L4 [Chromobacterium violaceum ATCC 12472]
          Length = 206

 Score =  181 bits (459), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V N  G+  G + VS+ +F  +  + ++ +V+       R G      R+EV ++ 
Sbjct: 1   MELNVINTQGKAVGSLQVSDALFGREYNEALVHQVVTAFLANARSGNRAQLTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S    RGGG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPFRQKGTGNARAGMTSTPNRRGGGRAFPNKPDENFTQKVNRKMYRAGIATILSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+L     KTK  V   + + L  AL I   +L  N  L++RN+PN+ ++    
Sbjct: 121 ERLIVVDDLSVASPKTKEFVGAVQPMGLEQALFI-TNELSENLYLSSRNLPNMLVIEAVQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            + Y +LR  K V+++ A++ LE+++
Sbjct: 180 ADPYSLLRFKKTVITRDAVKQLEEQW 205


>gi|117927516|ref|YP_872067.1| 50S ribosomal protein L4P [Acidothermus cellulolyticus 11B]
 gi|117647979|gb|ABK52081.1| LSU ribosomal protein L4P [Acidothermus cellulolyticus 11B]
          Length = 220

 Score =  181 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 7/208 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V   D      + +  D+F ++    ++ +V+  Q    R G  K++ R EV+  
Sbjct: 1   MTTVTVAGTD----RTVELPADVFDVQVNVPLIHQVVVAQLAAARQGTHKTRTRGEVSGG 56

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP+P       PKK+++ ALR AL+D+  +
Sbjct: 57  GKKPYRQKGTGRARQGSIRAPQFTGGGVVHGPMPRHYDQRTPKKMKAAALRGALTDRARA 116

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             I V+  +V  +   TK  +   R         +++   + D     + RNIP+++LL 
Sbjct: 117 GRIHVLPRIVDGEAPSTKQALEALRTALGTERRRVLVVLDRGDETGWKSLRNIPDVHLLV 176

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205
              +N YD+L    +V ++ A+     R
Sbjct: 177 ADQLNAYDVLSSDDVVFTEQALSEFLGR 204


>gi|145351929|ref|XP_001420312.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus
           lucimarinus CCE9901]
 gi|144580546|gb|ABO98605.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus
           lucimarinus CCE9901]
          Length = 224

 Score =  181 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 78/203 (38%), Positives = 111/203 (54%), Gaps = 3/203 (1%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V + DGE +G + +   IF    +  +  RV+RWQ  + R G  K+K R EVA +  K
Sbjct: 19  VPVYSFDGEARGSVELPGRIFDQPLRVDVAHRVVRWQRAKARKGLHKTKSRGEVAGSTRK 78

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           +  QKG+GRAR  +    Q RGGG A GPV     HALPKKVR + L+ ALS K     +
Sbjct: 79  VRPQKGSGRARVGNLKAPQMRGGGTAHGPVVRSHAHALPKKVRRMGLKVALSAKAAEGKL 138

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183
           +V+D+    E KT+ +      L     L   G   D   +++ARN+P++ +LP  G NV
Sbjct: 139 IVVDSFAGMEPKTRAMKATLERLTGDLGLAAGG---DELVRMSARNLPHVEVLPQIGANV 195

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
           Y ILR   L+++KS +E L  R 
Sbjct: 196 YSILRRRTLIVTKSGLEQLIARL 218


>gi|71278848|ref|YP_267621.1| 50S ribosomal protein L4 [Colwellia psychrerythraea 34H]
 gi|109893587|sp|Q487Z4|RL4_COLP3 RecName: Full=50S ribosomal protein L4
 gi|71144588|gb|AAZ25061.1| ribosomal protein L4 [Colwellia psychrerythraea 34H]
          Length = 201

 Score =  181 bits (458), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +ELS+++  G     + VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELSLKDASGA----LEVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + +K+   A+   LS+     
Sbjct: 57  AKPWRQKGTGRARAGTTRGPIWRTGGVTFAAKPQDHSQKVNRKMYRGAIASILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++N   +  KTK LV + + L+L +  +I   ++D N  L+ARN+  +++  V  I
Sbjct: 117 RLVVVENFSVETPKTKELVAKLKGLELKDV-LIVTKEVDENLFLSARNLYKVDVRDVAAI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E   
Sbjct: 176 DPVSLVGFEKVLITADAVKEIEGIL 200


>gi|90417570|ref|ZP_01225488.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2207]
 gi|90330591|gb|EAS45887.1| 50S ribosomal protein L4 [marine gamma proteobacterium HTCC2207]
          Length = 204

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++    G   G + VSE  F  +  Q ++ + +       R G    K RS V+  G
Sbjct: 1   MELAIATPKGNK-GTVEVSELAFGTEFNQDLVHQTVVAFLAGARQGTRAQKNRSAVSGGG 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKG+GRAR  +     +RGGG  F   P      L +K+   A+R  +S+    +
Sbjct: 60  RKPHAQKGSGRARAGTIRSPIWRGGGVTFAATPQDHSQKLNRKMYRAAMRSIVSELARQD 119

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK L+ + +   L+  +I+   ++  N  LA+RN+  +++     +
Sbjct: 120 RLIVVEEFGIDAPKTKLLIAKLQEFSLTEVMIV-TEEVSENLYLASRNLHKVDVRDAAAV 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ LE+  
Sbjct: 179 DPVSLINFDKVLVTVPALKKLEEIL 203


>gi|148270423|ref|YP_001244883.1| 50S ribosomal protein L4 [Thermotoga petrophila RKU-1]
 gi|170289182|ref|YP_001739420.1| ribosomal protein L4/L1e [Thermotoga sp. RQ2]
 gi|281412730|ref|YP_003346809.1| ribosomal protein L4/L1e [Thermotoga naphthophila RKU-10]
 gi|166199921|sp|A5IM84|RL4_THEP1 RecName: Full=50S ribosomal protein L4
 gi|226731438|sp|B1LBN9|RL4_THESQ RecName: Full=50S ribosomal protein L4
 gi|147735967|gb|ABQ47307.1| LSU ribosomal protein L4P [Thermotoga petrophila RKU-1]
 gi|170176685|gb|ACB09737.1| ribosomal protein L4/L1e [Thermotoga sp. RQ2]
 gi|281373833|gb|ADA67395.1| ribosomal protein L4/L1e [Thermotoga naphthophila RKU-10]
          Length = 235

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 19/225 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE  G + +S+ +F + P   ++ R +  Q   +R G + +K R EV+  
Sbjct: 1   MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRARH S     +R GG A GP P      L KK++ LALR ALS K+  
Sbjct: 61  GRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDR---NFQLAARNIPNINLL 176
           N + V+D+L  +  KTK+L              +I     D    N +L+ +N+PN+ ++
Sbjct: 121 NKLFVLDDLKLERPKTKFLKEILQNLQLSDKKTLIVLPWKDEGYMNVKLSGKNLPNVKVI 180

Query: 177 PV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206
                             G+NV+D+L+   LVL++  +  +E+  
Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTQDMVSKIEEVL 225


>gi|294085959|ref|YP_003552719.1| 50S ribosomal protein L4 [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665534|gb|ADE40635.1| 50S ribosomal protein L4 [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 258

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 107/206 (51%), Positives = 135/206 (65%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V+ LD +  G I+V + +FA+ P+  +LARV++WQ  ++R G  K K RSEVA T 
Sbjct: 54  MKLNVKTLDNKAAGDITVDDTVFAVAPRADLLARVVKWQLAKRRAGSHKVKSRSEVARTT 113

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KM+ QKGTGRARH + SV QFRGGG   GPV     HALPKKVR   LR ALS K    
Sbjct: 114 AKMFRQKGTGRARHGAASVVQFRGGGVVHGPVVRDHGHALPKKVRRAGLRSALSSKASEG 173

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D LVSK  KT  L  +   L   NALII G +LD  F  AA NIP +++LP QGI
Sbjct: 174 KLIVLDKLVSK-GKTAALRAQLSKLGAENALIIGGEELDAGFVNAASNIPLVDVLPQQGI 232

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR   L+LSK A   LE+R K
Sbjct: 233 NVYDILRRDVLILSKDAAAHLEERLK 258


>gi|323700807|ref|ZP_08112719.1| ribosomal protein L4/L1e [Desulfovibrio sp. ND132]
 gi|323460739|gb|EGB16604.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans ND132]
          Length = 206

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V + +    G   ++ ++F ++    IL +V+R Q   +R G   +K R+  A  
Sbjct: 1   MAKIQVVDQNNTKVGDFELAPEVFEVEIMPEILNQVVRAQRASQRQGTHATKNRALKAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S +   +RGG  AFGP P      + KKVR LAL+ ALS +   
Sbjct: 61  GRKPWRQKGTGRARAGSSNSPLWRGGAAAFGPQPRDYTFKVNKKVRKLALKMALSSRVSE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+ ++   E KTK      + L   N  +I     D    ++ARN+P+I ++    
Sbjct: 121 AKMTVVSSIDLPEIKTKAFAEVAKNLG-LNKTLIVAKDADPKLTMSARNMPHIKVIEADK 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NVYD+L   +LV+ +SA + +++R K
Sbjct: 180 LNVYDVLLYPELVMLESAAQDVQERLK 206


>gi|315655880|ref|ZP_07908778.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333]
 gi|315489944|gb|EFU79571.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333]
          Length = 214

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 97/201 (48%), Gaps = 2/201 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + + +  G+  G + +  ++F L     ++ +V+  Q    R G   +K R +V+  G K
Sbjct: 7   VDIFDGVGKKTGTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  I
Sbjct: 67  PWRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRI 126

Query: 124 MV-IDNLVSKECKTKYLVTRFRALDLSNALIID-GCQLDRNFQLAARNIPNINLLPVQGI 181
            V  D  V +   TK      + +  S   +I    ++D    L+  N+   + L V  +
Sbjct: 127 HVLSDFGVKETPSTKVAKAALQGVVDSRRALIVLTPEVDDVVALSVNNLSEHHALFVGEL 186

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S +A+++ 
Sbjct: 187 NTYDVLANDDVVFSATALDSF 207


>gi|148652239|ref|YP_001279332.1| 50S ribosomal protein L4 [Psychrobacter sp. PRwf-1]
 gi|172048472|sp|A5WCJ1|RL4_PSYWF RecName: Full=50S ribosomal protein L4
 gi|148571323|gb|ABQ93382.1| LSU ribosomal protein L4P [Psychrobacter sp. PRwf-1]
          Length = 200

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 102/202 (50%), Gaps = 4/202 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           +++ + G     + +S+  F  +  + ++ +V+       R G    K R+EV+  G K 
Sbjct: 2   NLKTVTGAA---VELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGKKP 58

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     + GGG+AF   P      + +K+   A++  L++    + ++
Sbjct: 59  WRQKGTGRARAGSTRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELVRQDRLI 118

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           ++D++     KTK L+++      +   +I   ++D N  LAARNIP++N+L    ++  
Sbjct: 119 LVDSITVSAPKTKELISKLAE-LNAPRALIVTNEVDENLYLAARNIPHVNVLGTNEVDPV 177

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            ++   K+++S  A +  E+  
Sbjct: 178 SLIAFDKVIMSVDAAKQFEEAL 199


>gi|312140917|ref|YP_004008253.1| 50S ribosomal protein l4 rpld [Rhodococcus equi 103S]
 gi|325675445|ref|ZP_08155129.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707]
 gi|311890256|emb|CBH49574.1| 50S ribosomal protein L4 RplD [Rhodococcus equi 103S]
 gi|325553416|gb|EGD23094.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707]
          Length = 221

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V+   G+  G + +  +IF       ++ +V+  Q    R G   +K R EV   G 
Sbjct: 9   TLDVKAAGGKTNGTVDLPSEIFDATANIALMHQVVVAQLAAARQGTHSTKTRGEVRGGGK 68

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 69  KPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 128

Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI  LV+ +   TK   +    L      ++   + D     + +N+  ++ +    +
Sbjct: 129 IHVITELVAGQVPSTKTAKSFLGELSDRKKFLLVVGREDIAAWKSVQNLDGVHPIAPDQL 188

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A+   
Sbjct: 189 NTYDVLNSDDVVFSLEALNTF 209


>gi|83648851|ref|YP_437286.1| 50S ribosomal protein L4 [Hahella chejuensis KCTC 2396]
 gi|109893598|sp|Q2S913|RL4_HAHCH RecName: Full=50S ribosomal protein L4
 gi|83636894|gb|ABC32861.1| Ribosomal protein L4 [Hahella chejuensis KCTC 2396]
          Length = 202

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 106/200 (53%), Gaps = 1/200 (0%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
             ++G  KG +SVS+  FA    + ++ +V+       R G    K RS+V+  G K + 
Sbjct: 3   LTINGAGKGTVSVSDVAFARDFNEALVHQVVTAYLAGGRQGSKAQKTRSQVSGGGKKPWR 62

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKG+GRAR  +     +RGGGK F   P+     + KK+   A++  LS+      ++V+
Sbjct: 63  QKGSGRARAGTIRSPIWRGGGKTFAATPLDHSQKVNKKMYRAAMQSILSELVRQERLVVV 122

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           + +  +  KTK    + + L L N LI+    +D+N  LA+RNIP++++     IN   +
Sbjct: 123 EEMAVEAPKTKQFNAKLKDLGLENVLIVADA-VDQNLYLASRNIPHVDVCDAVAINPVSL 181

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA++ +E+  
Sbjct: 182 IAHDKVLVTVSALKKIEEML 201


>gi|291457203|ref|ZP_06596593.1| ribosomal protein L4/L1 family protein [Bifidobacterium breve DSM
           20213]
 gi|291381038|gb|EFE88556.1| ribosomal protein L4/L1 family protein [Bifidobacterium breve DSM
           20213]
          Length = 218

 Score =  181 bits (458), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-----KPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G+  G +    ++F +     K    ++ +V+  Q    R G   +K R  
Sbjct: 4   VTLNVTDAKGQAAGTVEAPVELFGVSAEDVKAHIPLIHQVVTAQLAAARQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ ALR+ALSD
Sbjct: 64  VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGVVFGPQPRDYSQRTPKKMKAAALRYALSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  I V+D     E  TK  V     +       +   + + N  L+ RNIP ++ +
Sbjct: 124 RANAGRIAVVD-FGITEPSTKAAVAALSPITEDKFTTVVFTRDNINEWLSVRNIPTVHPI 182

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
            V  +N YD++    +V +K A EA 
Sbjct: 183 FVDQLNTYDVITAQYVVFTKEAFEAF 208


>gi|56707479|ref|YP_169375.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|89255671|ref|YP_513032.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica
           LVS]
 gi|110669950|ref|YP_666507.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115314172|ref|YP_762895.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|118496853|ref|YP_897903.1| 50S ribosomal protein L4 [Francisella tularensis subsp. novicida
           U112]
 gi|134302584|ref|YP_001122555.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156501621|ref|YP_001427686.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009888|ref|ZP_02274819.1| ribosomal protein L4/L1 family [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254370828|ref|ZP_04986833.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|290953210|ref|ZP_06557831.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313578|ref|ZP_06804167.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|81597928|sp|Q5NHW7|RL4_FRATT RecName: Full=50S ribosomal protein L4
 gi|109893596|sp|Q2A5G9|RL4_FRATH RecName: Full=50S ribosomal protein L4
 gi|122325786|sp|Q0BNS6|RL4_FRATO RecName: Full=50S ribosomal protein L4
 gi|123063580|sp|Q14JB9|RL4_FRAT1 RecName: Full=50S ribosomal protein L4
 gi|166234667|sp|A7N9S7|RL4_FRATF RecName: Full=50S ribosomal protein L4
 gi|166234668|sp|A0Q4I4|RL4_FRATN RecName: Full=50S ribosomal protein L4
 gi|166234669|sp|A4IZT3|RL4_FRATW RecName: Full=50S ribosomal protein L4
 gi|56603971|emb|CAG44959.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|89143502|emb|CAJ78678.1| 50S ribosomal protein L4 [Francisella tularensis subsp. holarctica
           LVS]
 gi|110320283|emb|CAL08342.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115129071|gb|ABI82258.1| ribosomal protein L4 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|118422759|gb|ABK89149.1| 50S ribosomal protein L4 [Francisella novicida U112]
 gi|134050361|gb|ABO47432.1| ribosomal protein L4 [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|151569071|gb|EDN34725.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156252224|gb|ABU60730.1| ribosomal protein L4 [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|282158623|gb|ADA78014.1| 50S ribosomal protein L4 [Francisella tularensis subsp. tularensis
           NE061598]
 gi|328676322|gb|AEB27192.1| LSU ribosomal protein L4p (L1e) [Francisella cf. novicida Fx1]
          Length = 207

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++++L G++ G + V+E +FA    + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     FR GG  F   P      + +K+ S A++  LS+   S 
Sbjct: 61  AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRSG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180
            + +++ L  +  KT+   +   +L + + L + G  +   N  L++RN+ N+ +     
Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN   ++    +VL+K AI+ +E++ 
Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206


>gi|23336502|ref|ZP_00121716.1| COG0088: Ribosomal protein L4 [Bifidobacterium longum DJO10A]
 gi|23466131|ref|NP_696734.1| 50S ribosomal protein L4 [Bifidobacterium longum NCC2705]
 gi|189440570|ref|YP_001955651.1| 50S ribosomal protein L4 [Bifidobacterium longum DJO10A]
 gi|213693087|ref|YP_002323673.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|227546477|ref|ZP_03976526.1| ribosomal protein L4 [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621011|ref|ZP_04664042.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|296454869|ref|YP_003662013.1| 50S ribosomal protein L4/L1e [Bifidobacterium longum subsp. longum
           JDM301]
 gi|312133875|ref|YP_004001214.1| rpld [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483449|ref|ZP_07942439.1| ribosomal protein L4/L1 family protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689928|ref|YP_004209662.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis
           157F]
 gi|322691869|ref|YP_004221439.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|46576825|sp|Q8G416|RL4_BIFLO RecName: Full=50S ribosomal protein L4
 gi|226730621|sp|B3DQ14|RL4_BIFLD RecName: Full=50S ribosomal protein L4
 gi|254803717|sp|B7GND9|RL4_BIFLI RecName: Full=50S ribosomal protein L4
 gi|23326867|gb|AAN25370.1| 50S ribosomal protein L4 [Bifidobacterium longum NCC2705]
 gi|189429005|gb|ACD99153.1| Ribosomal protein L4 [Bifidobacterium longum DJO10A]
 gi|213524548|gb|ACJ53295.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|227213026|gb|EEI80905.1| ribosomal protein L4 [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516112|gb|EEQ55979.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|291516468|emb|CBK70084.1| LSU ribosomal protein L4P [Bifidobacterium longum subsp. longum F8]
 gi|296184301|gb|ADH01183.1| ribosomal protein L4/L1e [Bifidobacterium longum subsp. longum
           JDM301]
 gi|311773168|gb|ADQ02656.1| RplD [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915135|gb|EFV36567.1| ribosomal protein L4/L1 family protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320456725|dbj|BAJ67347.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459265|dbj|BAJ69886.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320461264|dbj|BAJ71884.1| 50S ribosomal protein L4 [Bifidobacterium longum subsp. infantis
           157F]
          Length = 218

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFAL-----KPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G+  G +   E +F +     +    ++ +V+  Q    R G   +K R  
Sbjct: 4   VTLNVTDAKGQATGTVEAPEALFGVSAEDVQAHIPLIHQVVTAQLAAARQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ ALR+ALSD
Sbjct: 64  VSGGGKKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYALSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  + V++     E  TK  V     +       +   + + N  L+ RNIP ++ +
Sbjct: 124 RANAGRVAVVE-FGITEPSTKAAVAALAPITADKFTTVVFTRDNINEWLSVRNIPTVHPI 182

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
            V  +N YD++    +V +K A EA 
Sbjct: 183 FVDQLNTYDVITSQYVVFTKEAFEAF 208


>gi|241667386|ref|ZP_04754964.1| 50S ribosomal protein L4 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875935|ref|ZP_05248645.1| 50S ribosomal protein L4/L1 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841956|gb|EET20370.1| 50S ribosomal protein L4/L1 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 207

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++++L G + GV+ V+E +FA    + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MDLNIKSLAGAEAGVVGVAEGVFAADYNESLIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     FR GG  F   P      + +K+ S A++  LS+   S+
Sbjct: 61  AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180
            + V+++L  +  KTK       +L + + L + G  + + N  L++RN+ N+ +     
Sbjct: 121 RMTVVESLRLETPKTKEFKAIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN   ++    +V +K AI+ +E++ 
Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206


>gi|187932142|ref|YP_001892127.1| 50S ribosomal protein L4 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|226730667|sp|B2SDY4|RL4_FRATM RecName: Full=50S ribosomal protein L4
 gi|187713051|gb|ACD31348.1| 50S ribosomal protein L4 [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 207

 Score =  180 bits (457), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++++L G++ G + V+E +FA    + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MDLNIKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     FR GG  F   P      + +K+ S A++  LS+     
Sbjct: 61  AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRLG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180
            + +++ L  +  KT+   +   +L + + L + G  +   N  L++RN+ N+ +     
Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN   ++    +VL+K AI+ +E++ 
Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206


>gi|301059224|ref|ZP_07200161.1| 50S ribosomal protein L4 [delta proteobacterium NaphS2]
 gi|300446659|gb|EFK10487.1| 50S ribosomal protein L4 [delta proteobacterium NaphS2]
          Length = 207

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V NL  E    + +++D+F++  ++ +L +V+  Q    R G + SK R+ V  +
Sbjct: 1   MTVLDVYNLQKEKVSEVELNKDVFSVPIKKHVLHQVVVAQLAGHRTGTAASKNRAAVKGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K++ QKGTGRAR    S    +GGG AFGP P      +PKKVR  ALR AL+DK   
Sbjct: 61  GAKLWRQKGTGRARVGKASSPTRKGGGVAFGPSPRSYDQKIPKKVRKSALRMALTDKVQC 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VID+    E KTK+ V      D     +I   +   N + +++N+P I ++  +G
Sbjct: 121 EQLFVIDDFTLPEIKTKHFVEAMNQFD-VQKALIVTNEKSENLEKSSKNVPKIKVMRSEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+   L L + A++ +++  
Sbjct: 180 LNVYDILKHDTLFLERMAVDKIQEAL 205


>gi|253991687|ref|YP_003043043.1| 50S ribosomal protein L4 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783137|emb|CAQ86302.1| 50S ribosomal protein L4 [Photorhabdus asymbiotica]
          Length = 201

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L + LII G ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLVQKLKEMSLEDVLIITG-EVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|318607743|emb|CBY29241.1| LSU ribosomal protein L4p (L1e) [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 201

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|238754176|ref|ZP_04615534.1| 50S ribosomal protein L4 [Yersinia ruckeri ATCC 29473]
 gi|238763729|ref|ZP_04624688.1| 50S ribosomal protein L4 [Yersinia kristensenii ATCC 33638]
 gi|238698031|gb|EEP90789.1| 50S ribosomal protein L4 [Yersinia kristensenii ATCC 33638]
 gi|238707672|gb|EEQ00032.1| 50S ribosomal protein L4 [Yersinia ruckeri ATCC 29473]
          Length = 201

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|264676443|ref|YP_003276349.1| ribosomal protein L4/L1e [Comamonas testosteroni CNB-2]
 gi|299531235|ref|ZP_07044646.1| 50S ribosomal protein L4 [Comamonas testosteroni S44]
 gi|262206955|gb|ACY31053.1| ribosomal protein L4/L1e [Comamonas testosteroni CNB-2]
 gi|298720818|gb|EFI61764.1| 50S ribosomal protein L4 [Comamonas testosteroni S44]
          Length = 207

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    +   E +F  +  + ++ +++       R G    K R +V +T 
Sbjct: 1   MQLELLNEQGQAASKVEAPETVFGREFNEDLVHQLVTAYRANARQGTRAQKDREQVRHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
           +K + QKGTGRAR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMASILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++L     KTK L  +F+A++LS+++++   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVESLTLDTPKTKVLADKFKAMNLSSSVMVIAEEIDENLYLASRNLKNVFVVEPRY 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI+ L++ F
Sbjct: 181 ADPVSLVHYKKVLVTKGAIDKLKEMF 206


>gi|226939187|ref|YP_002794258.1| RplD [Laribacter hongkongensis HLHK9]
 gi|254803740|sp|C1DAR8|RL4_LARHH RecName: Full=50S ribosomal protein L4
 gi|226714111|gb|ACO73249.1| RplD [Laribacter hongkongensis HLHK9]
          Length = 206

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N  G+    +  +E +F  +  + ++ +V+       R G    K RSE+  + 
Sbjct: 1   MELKVINQQGQAVESLQAAETLFGREYNEALVHQVVTAYLANARAGNRAQKDRSEINKST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGGK F   P     H + +K+    +   LS+   S
Sbjct: 61  KKPFRQKGTGRARAGRASSPLWRGGGKVFPNSPDENFSHKVNRKMFRAGMAAILSELLRS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + +++ID++     KTK    + +AL L NAL+I G +LD N  L++RN+ N+ ++    
Sbjct: 121 DRLVIIDDIKVDSPKTKEFAAKAKALGLENALVITG-ELDENLYLSSRNLSNVLVIEASQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            + Y ++R  K+V+++ A++  E+++
Sbjct: 180 ADPYSLVRFDKVVVTRDAVKQFEEQW 205


>gi|188996238|ref|YP_001930489.1| ribosomal protein L4/L1e [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931305|gb|ACD65935.1| ribosomal protein L4/L1e [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 208

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V N   E  G I++ EDIF  +  QG +  V++W    KR G + +K R+EVA + 
Sbjct: 1   MEFNVVNNKNEVIGKINLKEDIFKTEVNQGTVWEVIKWHLASKRAGTASTKTRAEVAGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRARH     + F GGG A GP P     ALPKKVR   L+  L+ K  +N
Sbjct: 61  RKIYPQKGTGRARHGDIKANIFVGGGVAHGPHPRDYYFALPKKVRRKVLKGVLTYKLNNN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +++V+D+   +  KTK  +   ++    ++ +++   +   N   + RNIP + +L  +G
Sbjct: 121 ELIVVDDFNFEAPKTKNAIEVLKSFGLENSKVLLVLPEKLENVIKSFRNIPKVKILLAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN YD+L   K+++ KSA+E +++R 
Sbjct: 181 INSYDVLNNDKVIIFKSALEKIQERL 206


>gi|209165351|gb|ACI41237.1| ribosomal protein L4 [Mycobacterium chelonae]
          Length = 199

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 1/192 (0%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           +  G I +  ++F       +L +V+  Q    R G   +K R  V+  G K Y QKGTG
Sbjct: 2   KTDGSIELPAELFDAPANIALLHQVVTAQLAAGRQGTHSTKTRGLVSGGGKKPYRQKGTG 61

Query: 72  RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNLV 130
           RAR  S    QF GGG   GP P       PKK+ + ALR ALSD+  +  I  + + + 
Sbjct: 62  RARQGSTRAPQFTGGGIVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVA 121

Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
            +E  TK   +    +     +++   + D     + RN+PN+++L    +N YD+L+  
Sbjct: 122 GQEPSTKSAKSFLAEISDRKQVLVVLGRDDLTSVKSVRNLPNVHVLAYDQLNTYDVLKAD 181

Query: 191 KLVLSKSAIEAL 202
            +V S  A+   
Sbjct: 182 DVVFSVEALNGF 193


>gi|78186071|ref|YP_374114.1| 50S ribosomal protein L4 [Chlorobium luteolum DSM 273]
 gi|109893616|sp|Q3B6G0|RL4_PELLD RecName: Full=50S ribosomal protein L4
 gi|78165973|gb|ABB23071.1| LSU ribosomal protein L4P [Chlorobium luteolum DSM 273]
          Length = 208

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N  G + G + ++ +DIF  +  +  +   ++     KR G  KSK R+EV   
Sbjct: 1   MELKVLNTAGAETGEVVTLRDDIFGAEVSEHAIWLDVKSILANKRQGTHKSKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  S       GGG  FGP P      + +KV+ LA R A S K   
Sbjct: 61  GRKPYRQKGTGNARQGSTRSPLMIGGGTIFGPTPHGYDQKVNRKVKQLARRSAFSAKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+++++    E KTK +    R L   +  +++     +     + RNI  +N++  +
Sbjct: 121 GRILIVEDFALAEIKTKPVADMLRNLGLDAKKILMLTPDYNMVIARSGRNIEALNIMTAE 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL    ++  K+A++ LE+  
Sbjct: 181 KASTYDILNSHTVLFQKTALKKLEETL 207


>gi|284034001|ref|YP_003383932.1| 50S ribosomal protein L4/L1e [Kribbella flavida DSM 17836]
 gi|283813294|gb|ADB35133.1| ribosomal protein L4/L1e [Kribbella flavida DSM 17836]
          Length = 237

 Score =  180 bits (457), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 1/189 (0%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
           G   +  ++F ++    ++ +V+  Q    R G  K K R EV+  G+K Y QKGTGRAR
Sbjct: 18  GSAELPAELFDVQVNIPLIHQVVVAQLAAARQGTHKVKSRGEVSGGGAKPYRQKGTGRAR 77

Query: 75  HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KE 133
             S    QF GGG   GP P       PKK+ + ALR ALSD+     + V++N V    
Sbjct: 78  QGSTRAPQFTGGGVVHGPTPRNYSQRTPKKMIAAALRGALSDRARDGRVFVVENFVDGDT 137

Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193
             TK  V     +      ++   + D    L+ RN+P ++L+    +N YD+L    +V
Sbjct: 138 PSTKAAVKALTEITGLVKALVVIDRDDELTWLSLRNVPTVHLIAYDQLNAYDVLCSDAVV 197

Query: 194 LSKSAIEAL 202
            +++A++  
Sbjct: 198 FTRAALDGF 206


>gi|437924|emb|CAA79778.1| ribosomal protein L4 [Thermotoga maritima]
          Length = 235

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 19/225 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE  G + +S+ +F + P   ++ R +  Q   +R G + +K R EV+  
Sbjct: 1   MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRA H S     +R GG   GP P      L KK++ LALR ALS K+  
Sbjct: 61  GRKPWPQKHTGRASHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR----NFQLAARNIPNINLL 176
           N ++V+D+L  +  KTK L    + L LS+   +           N +L+ RN+P++ ++
Sbjct: 121 NKLLVLDHLKLERPKTKSLKEILQNLQLSDKKTLMVLPWKEEGYMNVKLSGRNLPDVKVI 180

Query: 177 PV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206
                             G+NV+D+L+   LVL++  +  +E+  
Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 225


>gi|238752686|ref|ZP_04614157.1| 50S ribosomal protein L4 [Yersinia rohdei ATCC 43380]
 gi|238783170|ref|ZP_04627196.1| 50S ribosomal protein L4 [Yersinia bercovieri ATCC 43970]
 gi|238709113|gb|EEQ01360.1| 50S ribosomal protein L4 [Yersinia rohdei ATCC 43380]
 gi|238715966|gb|EEQ07952.1| 50S ribosomal protein L4 [Yersinia bercovieri ATCC 43970]
          Length = 201

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK L  + + + L + LI+ G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|158337811|ref|YP_001518987.1| 50S ribosomal protein L4 [Acaryochloris marina MBIC11017]
 gi|189029488|sp|B0C1D4|RL4_ACAM1 RecName: Full=50S ribosomal protein L4
 gi|158308052|gb|ABW29669.1| 50S ribosomal protein L4 [Acaryochloris marina MBIC11017]
          Length = 210

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/208 (31%), Positives = 98/208 (47%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   VRN  GED G   +   +   +    I+ R LR Q    R G + SK RSEV   
Sbjct: 1   MVNCVVRNWQGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A + +   
Sbjct: 61  GRKPWRQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRLALRTAFASRAED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK L+        +  +  ++          L+ARN+  + L+  
Sbjct: 121 LVVVEDFGDNLSRPKTKDLLEAMGRWGVNADSKTLLILADKHDTIYLSARNVEKLKLILA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   ++V ++SAI  +++ +
Sbjct: 181 SNLNVYDLLAADQIVATQSAIAKIQEVY 208


>gi|152972226|ref|YP_001337372.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206578232|ref|YP_002236282.1| ribosomal protein L4 [Klebsiella pneumoniae 342]
 gi|238896815|ref|YP_002921560.1| 50S ribosomal protein L4 [Klebsiella pneumoniae NTUH-K2044]
 gi|288933267|ref|YP_003437326.1| ribosomal protein L4/L1e [Klebsiella variicola At-22]
 gi|290512070|ref|ZP_06551438.1| 50S ribosomal protein L4/L1 [Klebsiella sp. 1_1_55]
 gi|330002293|ref|ZP_08304287.1| 50S ribosomal protein L4 [Klebsiella sp. MS 92-3]
 gi|166234677|sp|A6TEX1|RL4_KLEP7 RecName: Full=50S ribosomal protein L4
 gi|226730676|sp|B5XN95|RL4_KLEP3 RecName: Full=50S ribosomal protein L4
 gi|150957075|gb|ABR79105.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|206567290|gb|ACI09066.1| ribosomal protein L4 [Klebsiella pneumoniae 342]
 gi|238549142|dbj|BAH65493.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|288887996|gb|ADC56314.1| ribosomal protein L4/L1e [Klebsiella variicola At-22]
 gi|289775860|gb|EFD83860.1| 50S ribosomal protein L4/L1 [Klebsiella sp. 1_1_55]
 gi|328537366|gb|EGF63616.1| 50S ribosomal protein L4 [Klebsiella sp. MS 92-3]
          Length = 201

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+E+  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEITGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDANGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|54113207|gb|AAV29237.1| NT02FT0099 [synthetic construct]
          Length = 207

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++++L G++ G + V+E +FA    + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MDLNLKSLAGQEAGSLGVAEGVFAADYNEALIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     FR GG  F   P      + +K+ S A++  LS+   S 
Sbjct: 61  AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELLRSG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180
            + +++ L  +  KT+   +   +L + + L + G  +   N  L++RN+ N+ +     
Sbjct: 121 RMTIVEELKLETPKTREFKSVIDSLGVKDVLFVVGVEEFSENLYLSSRNLKNVAVCDSVE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN   ++    +VL+K AI+ +E++ 
Sbjct: 181 INPVSLVCFENVVLTKKAIKEIEEKL 206


>gi|300309457|ref|YP_003773549.1| 50S ribosomal protein L4 [Herbaspirillum seropedicae SmR1]
 gi|300072242|gb|ADJ61641.1| 50S ribosomal subunit L4 protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+    ++  + IF     + ++ +V+       R G  K K R EV++T 
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    +   LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++    +  KTK L  + + +    ++++    LD    LA+RN+P + ++  + 
Sbjct: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMG-MESVLVITDSLDEKLLLASRNLPGVLVVEPRQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++    ++++K A+  +E+  
Sbjct: 180 ADPVSLVYFKNVLITKPALAKIEELL 205


>gi|167854922|ref|ZP_02477698.1| 50S ribosomal protein L4 [Haemophilus parasuis 29755]
 gi|219871731|ref|YP_002476106.1| 50S ribosomal protein L4 [Haemophilus parasuis SH0165]
 gi|254803737|sp|B8F756|RL4_HAEPS RecName: Full=50S ribosomal protein L4
 gi|167853989|gb|EDS25227.1| 50S ribosomal protein L4 [Haemophilus parasuis 29755]
 gi|219691935|gb|ACL33158.1| 50S ribosomal protein L4 [Haemophilus parasuis SH0165]
          Length = 200

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V    G     +SVSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVV---GATA--LSVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D       KTK LV + + + L++A +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVDKFEIDAPKTKVLVQKLKDMALTDA-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVITVDAVKQIEEML 199


>gi|238788909|ref|ZP_04632699.1| 50S ribosomal protein L4 [Yersinia frederiksenii ATCC 33641]
 gi|238797237|ref|ZP_04640738.1| 50S ribosomal protein L4 [Yersinia mollaretii ATCC 43969]
 gi|238718874|gb|EEQ10689.1| 50S ribosomal protein L4 [Yersinia mollaretii ATCC 43969]
 gi|238722936|gb|EEQ14586.1| 50S ribosomal protein L4 [Yersinia frederiksenii ATCC 33641]
          Length = 201

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK L  + + + L +  +I   +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDV-LIVTSELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|189501210|ref|YP_001960680.1| 50S ribosomal protein L4 [Chlorobium phaeobacteroides BS1]
 gi|226730638|sp|B3EP60|RL4_CHLPB RecName: Full=50S ribosomal protein L4
 gi|189496651|gb|ACE05199.1| ribosomal protein L4/L1e [Chlorobium phaeobacteroides BS1]
          Length = 208

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N  G + G + ++++ +F+ +  +  +   ++     +R G  K+K RSEV   
Sbjct: 1   MELKVLNTGGSETGEVVTLNDAVFSAEVSEHAMYLDVKSIMANRRQGTHKAKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  S       GGG  FGP P      + KKV+ LA R AL++K   
Sbjct: 61  GRKPYRQKGTGHARQGSTRSPLMTGGGTIFGPEPRDYGLKVNKKVKKLARRSALTNKANE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++ V  + KT+ +    + L   S   ++   + +     + RNIP + ++   
Sbjct: 121 GGIVVVEDFVFDQIKTRQMAEVLKNLGLDSRKTLMLMPEHNDIIVRSGRNIPKLQVVVAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL    +++ K+A++ +E+  
Sbjct: 181 NASTYDILDSQTVLVQKTALKKIEETL 207


>gi|262273378|ref|ZP_06051192.1| LSU ribosomal protein L4p (L1e) [Grimontia hollisae CIP 101886]
 gi|262222356|gb|EEY73667.1| LSU ribosomal protein L4p (L1e) [Grimontia hollisae CIP 101886]
          Length = 200

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RS+V+  G
Sbjct: 1   MELVVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   AL+  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN      KTK L+ + + L+L+ A +I   ++D N  LAARN+  +++    GI
Sbjct: 116 RLIVVDNFSVAAPKTKELIAKLKELELTEA-LIVTAEVDENLFLAARNLYKVDVRDAAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++ +A++ +E+  
Sbjct: 175 DPVSLIAFDKVVMTAAAVKQVEEML 199


>gi|262045176|ref|ZP_06018203.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037496|gb|EEW38740.1| 50S ribosomal protein L4 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 201

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+E+  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEITGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDANGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTTDAVKQVEEML 200


>gi|239618264|ref|YP_002941586.1| ribosomal protein L4/L1e [Kosmotoga olearia TBF 19.5.1]
 gi|259491563|sp|C5CGR3|RL4_KOSOT RecName: Full=50S ribosomal protein L4
 gi|239507095|gb|ACR80582.1| ribosomal protein L4/L1e [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 19/225 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V N+ G   G + + + IF ++P   ++ R +  Q   +R G +K+K RSEV+  
Sbjct: 1   MAQTDVLNVTGNKIGTVELKDSIFNIEPNYDVMFRYVDMQLANRRAGTAKAKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     +R GG   GP P      L KK++ LAL+ ALS +F  
Sbjct: 61  GRKPWPQKHTGRARTGSIRNPLWRHGGVIHGPKPKDWSKKLNKKMKKLALKSALSLRFKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-----CQLDRNFQLAARNIPNINL 175
            +++V+D++     KTK +    + L LS+A  +            N +L+ RNIP + +
Sbjct: 121 GNLVVVDDIKLDRPKTKQMREIVKNLGLSDAKKVLFILPWKRDEYENVKLSGRNIPGVKV 180

Query: 176 L--------------PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +               + G+NV+DIL   K+V +   +  +E+  
Sbjct: 181 IIADNPGNLVNGRSSNIDGLNVFDILNHEKIVFTVDLVRKIEEVL 225


>gi|325299131|ref|YP_004259048.1| ribosomal protein L4/L1e [Bacteroides salanitronis DSM 18170]
 gi|324318684|gb|ADY36575.1| ribosomal protein L4/L1e [Bacteroides salanitronis DSM 18170]
          Length = 209

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GE+ G  + +++ IF + P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVLNIKGENTGRTVVLNDAIFGITPNDHAIYMAVKQYMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV+ LA + ALS K  +
Sbjct: 61  TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYSFKLNKKVKLLARKSALSYKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+++   +  KTK  V            L++   + ++N  L+ARN+   NL    
Sbjct: 121 NNIVVVEDFTFETPKTKDFVNVVNNLKVAGKKLLVVLPEANKNVYLSARNLERTNLAIAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV++++A++A+E+  
Sbjct: 181 ALNTYTVLNAETLVVTENALKAIEETL 207


>gi|126666812|ref|ZP_01737789.1| Ribosomal protein L4 [Marinobacter sp. ELB17]
 gi|126628857|gb|EAZ99477.1| Ribosomal protein L4 [Marinobacter sp. ELB17]
          Length = 201

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 2/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
             + G  +G I+VSE  FA    + ++ +V+       R G    K RSEV   G K + 
Sbjct: 3   LTITGSGQG-ITVSEATFAKDFNEALVHQVVVAYMAAGRQGTKAQKTRSEVRGGGKKPWR 61

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +R GG  F   P      + +K+   A+R  LS+      ++V+
Sbjct: 62  QKGTGRARAGTIRSPIWRSGGVTFAAKPRSYEQKVNRKMYRAAMRSILSELVRQERLIVV 121

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           D+      KTK    +   + LSN  +I    LD+N  LA+RN+P++++  V G++   +
Sbjct: 122 DDFSIDTPKTKAFTAKLADMGLSNV-LILSENLDQNLHLASRNVPHVDVRDVAGLDPVSL 180

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K+V++  A++ +E+  
Sbjct: 181 VAHEKIVVTVPALKKIEEML 200


>gi|256390141|ref|YP_003111705.1| 50S ribosomal protein L4/L1e [Catenulispora acidiphila DSM 44928]
 gi|256356367|gb|ACU69864.1| ribosomal protein L4/L1e [Catenulispora acidiphila DSM 44928]
          Length = 217

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 1/188 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  +IF ++    ++ +V+  Q    R G  K+K R EV+  G K Y QKGTGRAR 
Sbjct: 6   SVDLPGEIFDVQTNIPLIHQVVVAQLAAARQGTHKTKTRGEVSGGGKKPYRQKGTGRARQ 65

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK-EC 134
            S    QF GGG   GPVP       PKK+++ ALR ALSD+     ++V+D LV     
Sbjct: 66  GSTRAPQFAGGGVVHGPVPRDYAQRTPKKMKAAALRGALSDRARDGRVIVVDALVEGATP 125

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
            TK  V   + +     +++   + D     + RN+P ++L+ V  +N YD+L    +V 
Sbjct: 126 NTKSAVALLKGVTEHKNVLVVLQRTDEVSYKSLRNVPTVHLIDVGQLNTYDVLVNDAVVF 185

Query: 195 SKSAIEAL 202
           ++ A +  
Sbjct: 186 TQGAYDQF 193


>gi|146313384|ref|YP_001178458.1| 50S ribosomal protein L4 [Enterobacter sp. 638]
 gi|166990949|sp|A4WFC7|RL4_ENT38 RecName: Full=50S ribosomal protein L4
 gi|145320260|gb|ABP62407.1| LSU ribosomal protein L4P [Enterobacter sp. 638]
          Length = 201

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|117618764|ref|YP_854840.1| 50S ribosomal protein L4 [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|330827884|ref|YP_004390836.1| 50S ribosomal protein L4 [Aeromonas veronii B565]
 gi|166234629|sp|A0KF22|RL4_AERHH RecName: Full=50S ribosomal protein L4
 gi|117560171|gb|ABK37119.1| ribosomal protein L4/L1 family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|328803020|gb|AEB48219.1| 50S ribosomal protein L4 [Aeromonas veronii B565]
          Length = 201

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++     K  + VSE  F  +  + ++ +V+   +   R G      RSEV+  G
Sbjct: 1   MELVMKD----AKSALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQLTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   A+R  LS+     
Sbjct: 57  KKPWRQKGTGRARAGSIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIRSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L+ + + ++L++  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFGIEAPKTKELIAKLKEMELTDV-LIVTAEVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVLMTADAVKQIEEML 200


>gi|229496144|ref|ZP_04389864.1| ribosomal protein L4/L1 family protein [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316722|gb|EEN82635.1| ribosomal protein L4/L1 family protein [Porphyromonas endodontalis
           ATCC 35406]
          Length = 209

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N+ GED G  + + + +F ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVSVYNVKGEDTGRKVVLDDAVFGIEPNDHAIYLAVKLYRANQRQGTHKSKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KK+  LA R ALS K  +
Sbjct: 61  TRKLGRQKGGGGARRGDINSPLLVGGARVFGPRPRSYSFKLNKKLVRLARRSALSYKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +I V++       KTK  V    AL       +     +  N  L+ARN+P+  +    
Sbjct: 121 QEIKVVEAFDFAAPKTKDFVALTSALGLAGKKTLFVMNNIPANVYLSARNVPSARIANAV 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            +N Y +L  ++LV ++ AI    + FK
Sbjct: 181 SLNTYSVLDATQLVFTEEAIATANEMFK 208


>gi|92112555|ref|YP_572483.1| 50S ribosomal protein L4P [Chromohalobacter salexigens DSM 3043]
 gi|122420788|sp|Q1R0H4|RL4_CHRSD RecName: Full=50S ribosomal protein L4
 gi|91795645|gb|ABE57784.1| LSU ribosomal protein L4P [Chromohalobacter salexigens DSM 3043]
          Length = 202

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 1/200 (0%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            NL G D G + VS+  F  +  + ++ +V+       R G    K RSEV   G K + 
Sbjct: 3   LNLAGADAGTVEVSDATFGKEFNESLVHQVVTAYFAAGRQGTRAQKTRSEVRGGGKKPWR 62

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +R GG  F   P      + +K+   A+R  LS+      ++V+
Sbjct: 63  QKGTGRARAGTIRSPLWRSGGVTFAARPQDYTQKVNRKMYRAAMRSILSELVRQERLVVV 122

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           D+      KTK LV + + LD     +I    +D    LAARNIP ++++ V   +   +
Sbjct: 123 DSFEVDAPKTKQLVAKLKDLD-LEKALIVTEDIDEKLFLAARNIPYVDVVDVAAADPVSL 181

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA+   E++ 
Sbjct: 182 VAFDKVLVTVSALRKFEEKL 201


>gi|237728654|ref|ZP_04559135.1| LSU ribosomal protein L4P [Citrobacter sp. 30_2]
 gi|261342789|ref|ZP_05970647.1| ribosomal protein L4/L1 family protein [Enterobacter cancerogenus
           ATCC 35316]
 gi|226909276|gb|EEH95194.1| LSU ribosomal protein L4P [Citrobacter sp. 30_2]
 gi|288314967|gb|EFC53905.1| ribosomal protein L4/L1 family protein [Enterobacter cancerogenus
           ATCC 35316]
          Length = 201

 Score =  180 bits (456), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVESFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|311693272|gb|ADP96145.1| 50S ribosomal protein L4 [marine bacterium HP15]
          Length = 201

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 103/200 (51%), Gaps = 2/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
             + G  KG ISVS+  FA    + ++ +V+       R G    K RSEV+  G K + 
Sbjct: 3   LTITGSGKG-ISVSDAAFAKDFNESLVHQVVTAYMAGARQGTKAQKTRSEVSGGGKKPWR 61

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +R GG  F   P      + +K+   A+R   S+      ++V+
Sbjct: 62  QKGTGRARAGTIRSPIWRSGGVTFAAKPRGFEQKVNRKMYRAAMRSIFSELVRQERLVVV 121

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           D++     KTK    + + + ++NA +I    +++N  LA+RNIP++++  + G++   +
Sbjct: 122 DDMNVDSPKTKAFNAKLKDIGVTNA-LILSDNVEQNLHLASRNIPHVDVRDIAGLDPVSL 180

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K+V++  A++ +E+  
Sbjct: 181 VAFEKVVVTVPALKKIEEML 200


>gi|260779502|ref|ZP_05888392.1| LSU ribosomal protein L4p (L1e) [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604311|gb|EEX30615.1| LSU ribosomal protein L4p (L1e) [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 200

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RSEVA  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVAGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVITAEAVKQVEEML 199


>gi|224023619|ref|ZP_03641985.1| hypothetical protein BACCOPRO_00326 [Bacteroides coprophilus DSM
           18228]
 gi|224016841|gb|EEF74853.1| hypothetical protein BACCOPRO_00326 [Bacteroides coprophilus DSM
           18228]
          Length = 209

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GE+ G  ++++E IF + P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVLNIKGEETGRKVTLNESIFGITPNDHAIYLDVKQYMASQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYWFKLNKKVKALARKSALSYKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+++   +  KTK  V            L++     D+N  L+ARN+   N++   
Sbjct: 121 NNIVVVEDFTFEAPKTKDFVNVVNNLKVSGKKLLMVLSGADKNVYLSARNLERTNVMVAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV+++SA++A+E+  
Sbjct: 181 ALNTYKVLDAETLVVTESALKAIEETL 207


>gi|302807160|ref|XP_002985293.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]
 gi|300147121|gb|EFJ13787.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]
          Length = 215

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 120/204 (58%), Gaps = 1/204 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L V N + EDKG ++++ DIF +  ++ I+  V++WQ  ++R G   +K R EVA +  K
Sbjct: 6   LPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRK 65

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           +  QKGTG+ARH S+   QFRGGG A GP P    + L KKVR L L+ ALS +     +
Sbjct: 66  INKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVAERKL 125

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGIN 182
           M+ DN+     KT+ L+     L     LI+DG +   R   LA RN+  +N++P +G+N
Sbjct: 126 MLFDNVDLPTHKTRQLMKLVPNLGCRRVLIVDGVEKMGREITLACRNVKEVNVIPAKGLN 185

Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206
           VY IL    LV+S +A+  +EDR 
Sbjct: 186 VYSILLHDTLVMSVAAVREIEDRL 209


>gi|269122580|ref|YP_003310757.1| ribosomal protein L4/L1e [Sebaldella termitidis ATCC 33386]
 gi|268616458|gb|ACZ10826.1| ribosomal protein L4/L1e [Sebaldella termitidis ATCC 33386]
          Length = 212

 Score =  179 bits (455), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 5/211 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L +  +DG   G + V E+IF +KP + ++  VL  +    R G + +K R+EV   
Sbjct: 1   MPVLDIYTIDGTKAGTVDVKEEIFGIKPNKAVMHEVLTAELAEVRQGSASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG + GP P   V  + KKVR LA+R ALS K   
Sbjct: 61  GRKPFRQKGTGRARQGSTRAPHMVGGGVSHGPKPRDYVKKVNKKVRKLAIRSALSAKVNK 120

Query: 121 NDIMVIDNLVSKECKTK---YLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINL 175
            +I++ID    ++ KTK       +          I++    + + N  L+ RNI    +
Sbjct: 121 GEIIIIDAFELEKPKTKTIIDFSKKLDMAGAKQLYILNDLYIENEYNAYLSIRNIEKSYV 180

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           L    ++VY +L+  K+++++ A+  +E+  
Sbjct: 181 LMPNELSVYWLLKQDKIIMTREALAQIEEVL 211


>gi|150025406|ref|YP_001296232.1| 50S ribosomal protein L4 [Flavobacterium psychrophilum JIP02/86]
 gi|166234666|sp|A6GZ98|RL4_FLAPJ RecName: Full=50S ribosomal protein L4
 gi|149771947|emb|CAL43421.1| 50S ribosomal protein L4 [Flavobacterium psychrophilum JIP02/86]
          Length = 209

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N++G++ G  + +S+ +FA++P +  +   ++     +R G  K+K R+EVA +
Sbjct: 1   MEVKVLNINGKETGRKVQLSDSVFAIEPNKHAVYLDVKQYLANQRQGTHKAKERAEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L K V+ LA R A S K   
Sbjct: 61  TRKIKKQKGTGTARAGSAKNPLFKGGGRVFGPRPRSYSFKLNKTVKRLARRSAFSIKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +I+V+++ V +   TK  +   +AL       +      ++N  L++RN+   N+L   
Sbjct: 121 ANIIVVEDFVFEAPNTKNFINVLKALGLEDKKSLFVLGDSNKNVYLSSRNLKATNVLTNS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y IL  + LVL + ++E +E+  
Sbjct: 181 ELSTYAILNANNLVLLEGSLEGIEENL 207


>gi|186684509|ref|YP_001867705.1| 50S ribosomal protein L4 [Nostoc punctiforme PCC 73102]
 gi|226730699|sp|B2ITQ4|RL4_NOSP7 RecName: Full=50S ribosomal protein L4
 gi|186466961|gb|ACC82762.1| ribosomal protein L4/L1e [Nostoc punctiforme PCC 73102]
          Length = 212

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/210 (33%), Positives = 102/210 (48%), Gaps = 4/210 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+E  V+N  GE  G  +    +   +    I+ R L  Q    R G + +K R+EV   
Sbjct: 1   MVESVVKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      L +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRLALRTAFVGRIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLD-RNFQLAARNIPNINLL 176
             ++   +      KTK LV           S AL+I     D  N  L+ARNI N+ L+
Sbjct: 121 LIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLKLI 180

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               +NV+D+L   K+V++ SA+E +++ +
Sbjct: 181 AANQLNVFDLLHADKIVVTASALEKIQEVY 210


>gi|67458671|ref|YP_246295.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2]
 gi|75536864|sp|Q4UMS8|RL4_RICFE RecName: Full=50S ribosomal protein L4
 gi|67004204|gb|AAY61130.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2]
          Length = 207

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 122/207 (58%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G IS++EDIFA++  +  I+ +V+ WQ  +   G  K+K  SEV+ T
Sbjct: 1   MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP        LPKKVR L L HALS+KF  
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT  LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 121 GKLLVIDSLKLDKPKTSVLVNILNKFQGKSFFVIDGNEVDTNFSLAAKNIYNTVIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207


>gi|148260938|ref|YP_001235065.1| 50S ribosomal protein L4 [Acidiphilium cryptum JF-5]
 gi|326404336|ref|YP_004284418.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301]
 gi|166234626|sp|A5FZW4|RL4_ACICJ RecName: Full=50S ribosomal protein L4
 gi|146402619|gb|ABQ31146.1| LSU ribosomal protein L4P [Acidiphilium cryptum JF-5]
 gi|325051198|dbj|BAJ81536.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301]
          Length = 216

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 110/205 (53%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ +  LD    G   + E+ FA  P+  I+ARV+ WQ  ++R G  K KG  EV+ T 
Sbjct: 1   MQIDISTLDAGSAGKAELPEEYFAATPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S    QFR GG   GPV     ++L KKVR L L  ALS K    
Sbjct: 61  KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKLAEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D  V+   KT  L  + + L      ++    +D  F  A+RN+  I++LPV G 
Sbjct: 121 KLVVLDT-VAGVSKTSELNVKLKKLG-WGRTLVVDAVVDEGFARASRNLIGIDVLPVVGA 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVYDIL+   L ++ + +E L+ R 
Sbjct: 179 NVYDILQHDTLAITAAGLEGLKRRL 203


>gi|261250416|ref|ZP_05942991.1| LSU ribosomal protein L4p (L1e) [Vibrio orientalis CIP 102891]
 gi|260938985|gb|EEX94972.1| LSU ribosomal protein L4p (L1e) [Vibrio orientalis CIP 102891]
          Length = 200

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVITADAVKQVEEML 199


>gi|282878760|ref|ZP_06287528.1| ribosomal protein L4/L1 family protein [Prevotella buccalis ATCC
           35310]
 gi|281299151|gb|EFA91552.1| ribosomal protein L4/L1 family protein [Prevotella buccalis ATCC
           35310]
          Length = 209

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 112/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N++G++ G  ++++E IF ++P   +L   ++     +R G +KSK RSE++ +
Sbjct: 1   MEVSVLNINGQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSELSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA R ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYRFKLNKKVKNLARRSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+++++      KTK  V   +         ++   + ++N  L+ARN+   +++   
Sbjct: 121 NAIVIVEDFTLDAPKTKDFVNIAKNLKVEGKKSLLVLPEANKNVYLSARNLQQADVMTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV+++++++ +++  
Sbjct: 181 TLNTYKVLNADVLVVTENSLKVIDNIL 207


>gi|239995001|ref|ZP_04715525.1| 50S ribosomal protein L4 [Alteromonas macleodii ATCC 27126]
 gi|332139849|ref|YP_004425587.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|332139862|ref|YP_004425600.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|226730609|sp|B4S092|RL4_ALTMD RecName: Full=50S ribosomal protein L4
 gi|327549871|gb|AEA96589.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549884|gb|AEA96602.1| 50S ribosomal protein L4 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 201

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++        + VSE  F  +  + ++ +V+       R G    K R+EV   G
Sbjct: 1   MELTLKDAQ----SALEVSEATFGREFNEALVHQVVVAYGAGARQGTKAQKTRAEVRGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     + GGG+AF   P      + KK+   A++  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGTIRSPIWVGGGRAFAAKPRDFDQKVNKKMYRGAIKSILSELIRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK L++     +L++  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLVVVEKFGVDAPKTKALISALNEYELNDV-LIVTPEVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ LE+  
Sbjct: 176 DPVSLIAFEKVLMTADAVKQLEEAL 200


>gi|218440624|ref|YP_002378953.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 7424]
 gi|226730648|sp|B7KHY8|RL4_CYAP7 RecName: Full=50S ribosomal protein L4
 gi|218173352|gb|ACK72085.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7424]
          Length = 210

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   V+N  G++ G  S+   +   +    IL R +       R G + +K R+EV   
Sbjct: 1   MVNCVVKNWQGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR AL+ K  +
Sbjct: 61  GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALNSKAEN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             I+        + KTK L            + +++   ++  N  L+ARNI N+ L+  
Sbjct: 121 LIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENISLSARNICNVKLIRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             INVYDIL  SKLV +  A+  + + +
Sbjct: 181 DSINVYDILSASKLVATSDALAKILEVY 208


>gi|167626805|ref|YP_001677305.1| 50S ribosomal protein L4 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189029504|sp|B0U0Y8|RL4_FRAP2 RecName: Full=50S ribosomal protein L4
 gi|167596806|gb|ABZ86804.1| 50S ribosomal protein L4 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 207

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++++L G + GV+ V+E +FA    + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MDLNIKSLAGAEAGVVGVAEGVFAADYNESLIHQVVVAYMAGARQGTKAQKTRSEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     FR GG  F   P      + +K+ S A++  LS+   S+
Sbjct: 61  AKPWRQKGTGRARAGTIRSPIFRKGGVTFAAKPKSYKQKVNRKMYSGAVKSILSELVRSD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG-CQLDRNFQLAARNIPNINLLPVQG 180
            + V+++L  +  KTK       +L + + L + G  + + N  L++RN+ N+ +     
Sbjct: 121 RMTVVESLRLETPKTKEFKVIVDSLGVKDVLFVVGVEEFNENLYLSSRNLKNVAVCDSVE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN   ++    +V +K AI+ +E++ 
Sbjct: 181 INPVSLVCFENVVFTKQAIKEIEEKL 206


>gi|145300934|ref|YP_001143775.1| 50S ribosomal protein L4 [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|166234630|sp|A4ST05|RL4_AERS4 RecName: Full=50S ribosomal protein L4
 gi|142853706|gb|ABO92027.1| ribosomal protein L4 [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 201

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++     K  + VSE  F  +  + ++ +V+   +   R G      RSEV+  G
Sbjct: 1   MELVMKD----AKSALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQLTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   A+R  LS+     
Sbjct: 57  KKPWRQKGTGRARAGSIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIRSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L+ + + ++L++  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFGIEAPKTKELIAKLKEMELTDV-LIVTAEVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVLMTAEAVKQIEEML 200


>gi|78221847|ref|YP_383594.1| 50S ribosomal protein L4 [Geobacter metallireducens GS-15]
 gi|109893597|sp|Q39Y05|RL4_GEOMG RecName: Full=50S ribosomal protein L4
 gi|78193102|gb|ABB30869.1| LSU ribosomal protein L4P [Geobacter metallireducens GS-15]
          Length = 220

 Score =  179 bits (455), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V +++    G + +S+ +F    ++ ++   ++ Q   +R G    K R+ V+  
Sbjct: 14  MATIDVFDINKNKVGEMDLSDAVFNGDVREYLIHEAVKVQLANRRAGTVGVKNRAAVSGG 73

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG+AR        + GGG AFGP       ++ KK R  A+R ALS  F  
Sbjct: 74  GKKPFKQKGTGQARQGCIRAPHYVGGGVAFGPQAKTYALSMNKKARKAAVRSALSMLFKE 133

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V+D L      TK  V   +  D     ++   + + N +L+ARN+ ++ +L  + 
Sbjct: 134 NKLSVLDCLSLPSISTKGFVGVLKTFD-VTKTLVIIDEANTNLELSARNVKDVKVLKAEH 192

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NV+DI++ + ++L++SA+  +E   +
Sbjct: 193 LNVFDIVKFNNIILTQSAVRKIEGALQ 219


>gi|254429193|ref|ZP_05042900.1| ribosomal protein L4/L1 family [Alcanivorax sp. DG881]
 gi|196195362|gb|EDX90321.1| ribosomal protein L4/L1 family [Alcanivorax sp. DG881]
          Length = 200

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 103/199 (51%), Gaps = 1/199 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL+    G ++VSE  F     + ++ +V+       R G    K RS+V+  G K + Q
Sbjct: 2   NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRSDVSGGGRKPWRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  +     +RGGGK F  VP      + +K+   AL+  +S+      ++V+D
Sbjct: 62  KGTGRARAGTIRSPIWRGGGKTFAAVPRDHSQKVNRKMYRGALQCIMSELVRQERLVVVD 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                  KTK +  + + ++  ++++I    +D N  LA+RN+P +++   QG++   ++
Sbjct: 122 EFTVDSPKTKTVAAKLKDME-LSSVLIVTDDVDENLFLASRNLPKVDVRDSQGVDPVSLI 180

Query: 188 RCSKLVLSKSAIEALEDRF 206
              K++++  A++ LE+  
Sbjct: 181 AFEKVLITVPALKKLEEAL 199


>gi|24114597|ref|NP_709107.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 301]
 gi|30065380|ref|NP_839551.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 2457T]
 gi|110807166|ref|YP_690686.1| 50S ribosomal protein L4 [Shigella flexneri 5 str. 8401]
 gi|46577238|sp|Q83PY4|RL4_SHIFL RecName: Full=50S ribosomal protein L4
 gi|123342428|sp|Q0SZY4|RL4_SHIF8 RecName: Full=50S ribosomal protein L4
 gi|24053795|gb|AAN44814.1| 50S ribosomal subunit protein L4 [Shigella flexneri 2a str. 301]
 gi|30043642|gb|AAP19362.1| 50S ribosomal subunit protein L4 [Shigella flexneri 2a str. 2457T]
 gi|110616714|gb|ABF05381.1| 50S ribosomal subunit protein L4 [Shigella flexneri 5 str. 8401]
 gi|281602684|gb|ADA75668.1| 50S ribosomal protein L4 [Shigella flexneri 2002017]
 gi|313647371|gb|EFS11823.1| 50S ribosomal protein L4 [Shigella flexneri 2a str. 2457T]
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLQKVDVRDATGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|317049839|ref|YP_004117487.1| 50S ribosomal protein L4/L1e [Pantoea sp. At-9b]
 gi|316951456|gb|ADU70931.1| ribosomal protein L4/L1e [Pantoea sp. At-9b]
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVESFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTAEAVKQVEEML 200


>gi|29348135|ref|NP_811638.1| 50S ribosomal protein L4 [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569591|ref|ZP_04847001.1| 50S ribosomal protein L4 [Bacteroides sp. 1_1_6]
 gi|298386182|ref|ZP_06995739.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 1_1_14]
 gi|46576805|sp|Q8A477|RL4_BACTN RecName: Full=50S ribosomal protein L4
 gi|29340038|gb|AAO77832.1| 50S ribosomal protein L4 [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841610|gb|EES69691.1| 50S ribosomal protein L4 [Bacteroides sp. 1_1_6]
 gi|298261410|gb|EFI04277.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 1_1_14]
          Length = 208

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 115/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++V+++ V +  KTK  V   +        L++   + ++N  L+ARNI   N+  V 
Sbjct: 121 NALIVVEDFVFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++++++A+++  
Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDNIL 207


>gi|295135700|ref|YP_003586376.1| 50S ribosomal protein L4 [Zunongwangia profunda SM-A87]
 gi|294983715|gb|ADF54180.1| 50S ribosomal protein L4 [Zunongwangia profunda SM-A87]
          Length = 208

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V ++ G++ G  +S+S+ +F ++P +  +   ++     +R G  K+K R+E+  +
Sbjct: 1   MEVAVLDIKGKETGRKVSLSDAVFGIEPNEHAVYLDVKQYLANQRQGTHKAKERAEITGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K ++ LA + ALS K   
Sbjct: 61  TRKLKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYGFKLNKALKRLARKSALSIKAND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I V+++      KTK  +   +A+ +     +I   + ++N  L++RN+    ++ V 
Sbjct: 121 NAITVVEDFSFDTPKTKNFIEVLKAIGIQEKKSLIVLGESNKNVYLSSRNLKGSEVVSVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y IL    +V  + ++E LE   
Sbjct: 181 ELSTYKILNAKSVVFMEGSLEGLESNL 207


>gi|322831073|ref|YP_004211100.1| ribosomal protein L4/L1e [Rahnella sp. Y9602]
 gi|321166274|gb|ADW71973.1| ribosomal protein L4/L1e [Rahnella sp. Y9602]
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVVKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LI+ G ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|312884702|ref|ZP_07744403.1| 50S ribosomal protein L4 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367615|gb|EFP95166.1| 50S ribosomal protein L4 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 200

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++     GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDAAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVMTADAVKQVEEML 199


>gi|153805958|ref|ZP_01958626.1| hypothetical protein BACCAC_00203 [Bacteroides caccae ATCC 43185]
 gi|149130635|gb|EDM21841.1| hypothetical protein BACCAC_00203 [Bacteroides caccae ATCC 43185]
          Length = 208

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI   N+  + 
Sbjct: 121 NAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVVLPEANKNVYLSARNIEGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++++++A+++  
Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDNIL 207


>gi|295085427|emb|CBK66950.1| LSU ribosomal protein L4P [Bacteroides xylanisolvens XB1A]
          Length = 208

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI   N+  + 
Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++++++A+++  
Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDNIL 207


>gi|227115271|ref|ZP_03828927.1| 50S ribosomal protein L4 [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|241895186|ref|ZP_04782482.1| 50S ribosomal protein L4 [Weissella paramesenteroides ATCC 33313]
 gi|241871492|gb|EER75243.1| 50S ribosomal protein L4 [Weissella paramesenteroides ATCC 33313]
          Length = 207

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++++   DG + G I +++ +F ++P   ++   +  Q    R G    K RS V+  
Sbjct: 1   MTKVALFKQDGSNAGDIELNDSVFGVEPNNNVITDAVLMQRASMRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + +PKK   LAL+  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKMPKKAYRLALKSVLSQKVLD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++V+D L     KTK        L+++   ++     + N  LAARN+ N+ ++  +G
Sbjct: 121 SSLVVVDALSFDAPKTKEFKAVLNNLNVNEKTLVVLDDDNANAALAARNLENVTVMTAKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NV D++   KL++ +SA+  +E+  
Sbjct: 181 VNVLDVINNDKLIVVQSALAQVEEVL 206


>gi|221069449|ref|ZP_03545554.1| ribosomal protein L4/L1e [Comamonas testosteroni KF-1]
 gi|220714472|gb|EED69840.1| ribosomal protein L4/L1e [Comamonas testosteroni KF-1]
          Length = 207

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    +   E +F  +  + ++ +++       R G    K R +V +T 
Sbjct: 1   MQLELLNEQGQAASKVEAPETVFGREFNEDLVHQLVTAYRANARQGTRAQKDREQVRHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
           +K + QKGTGRAR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMTAILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++L     KTK L  +F+A++LS+++++   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVESLTLDTPKTKVLADKFKAMNLSSSVMVIAEEIDENLYLASRNLKNVFVVEPRY 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI+ L++ F
Sbjct: 181 ADPVSLVHYKKVLVTKGAIDKLKEMF 206


>gi|71905962|ref|YP_283549.1| 50S ribosomal protein L4 [Dechloromonas aromatica RCB]
 gi|109893589|sp|Q47JA2|RL4_DECAR RecName: Full=50S ribosomal protein L4
 gi|71845583|gb|AAZ45079.1| LSU ribosomal protein L4P [Dechloromonas aromatica RCB]
          Length = 207

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N  G++   +  S+ +F     + ++ +++       R G  + K RSEV +T 
Sbjct: 1   MELKVINEQGQEAAKLQASDVLFGRDFNEALVHQIVVAYQANARSGDRQQKDRSEVRHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
           +K + QKGTGRAR  S     +RGGG+ F   P       + KK+    +   LS+    
Sbjct: 61  TKPWRQKGTGRARAGSNGSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMAAILSELARQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++VID+L     KTK    + +++ L   L++   +L+ N  L++RN+PN+ +L  Q 
Sbjct: 121 DRLVVIDDLSVDAPKTKLFTQKLKSMGLEGNLLVITDELNENLYLSSRNLPNVLVLEAQE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++R +K++++K+A+   E+ +
Sbjct: 181 ADPVSLVRFAKVLVTKNAVAKFEEMW 206


>gi|254038480|ref|ZP_04872536.1| ribosomal protein L4 [Escherichia sp. 1_1_43]
 gi|226838986|gb|EEH71009.1| ribosomal protein L4 [Escherichia sp. 1_1_43]
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K RSEV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|37528542|ref|NP_931887.1| 50S ribosomal protein L4 [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|46577173|sp|Q7MYF2|RL4_PHOLL RecName: Full=50S ribosomal protein L4
 gi|36787980|emb|CAE17097.1| 50S ribosomal protein L [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLVQKLKEMALEDV-LIITNEVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|15803846|ref|NP_289880.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 EDL933]
 gi|15833438|ref|NP_312211.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. Sakai]
 gi|16131198|ref|NP_417778.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12
           substr. MG1655]
 gi|16762844|ref|NP_458461.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766728|ref|NP_462343.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|26249913|ref|NP_755953.1| 50S ribosomal protein L4 [Escherichia coli CFT073]
 gi|29144331|ref|NP_807673.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415358|ref|YP_152433.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181943|ref|YP_218360.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|74313838|ref|YP_312257.1| 50S ribosomal protein L4 [Shigella sonnei Ss046]
 gi|82545682|ref|YP_409629.1| 50S ribosomal protein L4 [Shigella boydii Sb227]
 gi|82778615|ref|YP_404964.1| 50S ribosomal protein L4 [Shigella dysenteriae Sd197]
 gi|89110691|ref|AP_004471.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12
           substr. W3110]
 gi|91212755|ref|YP_542741.1| 50S ribosomal protein L4 [Escherichia coli UTI89]
 gi|110643558|ref|YP_671288.1| 50S ribosomal protein L4 [Escherichia coli 536]
 gi|117625597|ref|YP_858920.1| 50S ribosomal protein L4 [Escherichia coli APEC O1]
 gi|156932233|ref|YP_001436149.1| 50S ribosomal protein L4 [Cronobacter sakazakii ATCC BAA-894]
 gi|157148899|ref|YP_001456217.1| 50S ribosomal protein L4 [Citrobacter koseri ATCC BAA-895]
 gi|157156089|ref|YP_001464787.1| 50S ribosomal protein L4 [Escherichia coli E24377A]
 gi|157162793|ref|YP_001460111.1| 50S ribosomal protein L4 [Escherichia coli HS]
 gi|161506007|ref|YP_001573120.1| 50S ribosomal protein L4 [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|168260851|ref|ZP_02682824.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168468002|ref|ZP_02701839.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168752800|ref|ZP_02777822.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4113]
 gi|168753086|ref|ZP_02778093.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4401]
 gi|168769184|ref|ZP_02794191.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4486]
 gi|168778201|ref|ZP_02803208.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4196]
 gi|168784352|ref|ZP_02809359.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4076]
 gi|168785137|ref|ZP_02810144.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC869]
 gi|170018445|ref|YP_001723399.1| 50S ribosomal protein L4 [Escherichia coli ATCC 8739]
 gi|170082838|ref|YP_001732158.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170679638|ref|YP_001745581.1| 50S ribosomal protein L4 [Escherichia coli SMS-3-5]
 gi|170769547|ref|ZP_02904000.1| ribosomal protein L4 [Escherichia albertii TW07627]
 gi|187732957|ref|YP_001882003.1| 50S ribosomal protein L4 [Shigella boydii CDC 3083-94]
 gi|188493095|ref|ZP_03000365.1| ribosomal protein L4 [Escherichia coli 53638]
 gi|194435462|ref|ZP_03067627.1| ribosomal protein L4 [Shigella dysenteriae 1012]
 gi|194445826|ref|YP_002042689.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194447625|ref|YP_002047462.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472387|ref|ZP_03078371.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194736512|ref|YP_002116381.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195939868|ref|ZP_03085250.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. EC4024]
 gi|197248901|ref|YP_002148358.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262161|ref|ZP_03162235.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364288|ref|YP_002143925.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243728|ref|YP_002217401.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386551|ref|ZP_03213163.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205354933|ref|YP_002228734.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858681|ref|YP_002245332.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|208805624|ref|ZP_03247961.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4206]
 gi|208813906|ref|ZP_03255235.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4045]
 gi|208819842|ref|ZP_03260162.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4042]
 gi|209398551|ref|YP_002272775.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4115]
 gi|209920785|ref|YP_002294869.1| 50S ribosomal protein L4 [Escherichia coli SE11]
 gi|213021588|ref|ZP_03336035.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213052954|ref|ZP_03345832.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213423717|ref|ZP_03356697.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425751|ref|ZP_03358501.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213865565|ref|ZP_03387684.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|215488619|ref|YP_002331050.1| 50S ribosomal protein L4 [Escherichia coli O127:H6 str. E2348/69]
 gi|217326437|ref|ZP_03442521.1| ribosomal protein L4 [Escherichia coli O157:H7 str. TW14588]
 gi|218550594|ref|YP_002384385.1| 50S ribosomal protein L4 [Escherichia fergusonii ATCC 35469]
 gi|218555876|ref|YP_002388789.1| 50S ribosomal protein L4 [Escherichia coli IAI1]
 gi|218560380|ref|YP_002393293.1| 50S ribosomal protein L4 [Escherichia coli S88]
 gi|218691605|ref|YP_002399817.1| 50S ribosomal protein L4 [Escherichia coli ED1a]
 gi|218697011|ref|YP_002404678.1| 50S ribosomal protein L4 [Escherichia coli 55989]
 gi|218702081|ref|YP_002409710.1| 50S ribosomal protein L4 [Escherichia coli IAI39]
 gi|218706926|ref|YP_002414445.1| 50S ribosomal protein L4 [Escherichia coli UMN026]
 gi|224585234|ref|YP_002639033.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|227883450|ref|ZP_04001255.1| 50S ribosomal protein L4 [Escherichia coli 83972]
 gi|237703049|ref|ZP_04533530.1| 50S ribosomal subunit protein L4 [Escherichia sp. 3_2_53FAA]
 gi|238902410|ref|YP_002928206.1| 50S ribosomal subunit protein L4 [Escherichia coli BW2952]
 gi|253771857|ref|YP_003034688.1| 50S ribosomal protein L4 [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163247|ref|YP_003046355.1| 50S ribosomal protein L4 [Escherichia coli B str. REL606]
 gi|254795256|ref|YP_003080093.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. TW14359]
 gi|256020678|ref|ZP_05434543.1| 50S ribosomal protein L4 [Shigella sp. D9]
 gi|256025953|ref|ZP_05439818.1| 50S ribosomal protein L4 [Escherichia sp. 4_1_40B]
 gi|260599638|ref|YP_003212209.1| 50S ribosomal protein L4 [Cronobacter turicensis z3032]
 gi|260846117|ref|YP_003223895.1| 50S ribosomal subunit protein L4 [Escherichia coli O103:H2 str.
           12009]
 gi|260857440|ref|YP_003231331.1| 50S ribosomal subunit protein L4 [Escherichia coli O26:H11 str.
           11368]
 gi|260870062|ref|YP_003236464.1| 50S ribosomal subunit protein L4 [Escherichia coli O111:H- str.
           11128]
 gi|261224624|ref|ZP_05938905.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254482|ref|ZP_05947015.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str.
           FRIK966]
 gi|283788045|ref|YP_003367910.1| 50S ribosomal subunit protein L4 [Citrobacter rodentium ICC168]
 gi|283835736|ref|ZP_06355477.1| hypothetical protein CIT292_10128 [Citrobacter youngae ATCC 29220]
 gi|289824751|ref|ZP_06544216.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|291284677|ref|YP_003501495.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. CB9615]
 gi|293406916|ref|ZP_06650840.1| 50S ribosomal protein L4 [Escherichia coli FVEC1412]
 gi|293412738|ref|ZP_06655406.1| 50S ribosomal protein L4/L1 [Escherichia coli B354]
 gi|293416736|ref|ZP_06659373.1| 50S ribosomal protein L4/L1 [Escherichia coli B185]
 gi|293453637|ref|ZP_06664056.1| 50S ribosomal protein L4/L1 [Escherichia coli B088]
 gi|297516597|ref|ZP_06934983.1| 50S ribosomal protein L4 [Escherichia coli OP50]
 gi|298382656|ref|ZP_06992251.1| 50S ribosomal protein L4 [Escherichia coli FVEC1302]
 gi|300815471|ref|ZP_07095696.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 107-1]
 gi|300822878|ref|ZP_07103014.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 119-7]
 gi|300896667|ref|ZP_07115183.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 198-1]
 gi|300903567|ref|ZP_07121489.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 84-1]
 gi|300918292|ref|ZP_07134896.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 115-1]
 gi|300921872|ref|ZP_07138028.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 182-1]
 gi|300932212|ref|ZP_07147491.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 187-1]
 gi|300935317|ref|ZP_07150327.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 21-1]
 gi|300946541|ref|ZP_07160806.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 116-1]
 gi|300954806|ref|ZP_07167233.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 175-1]
 gi|300973998|ref|ZP_07172405.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 200-1]
 gi|300979890|ref|ZP_07174766.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 45-1]
 gi|301018817|ref|ZP_07183061.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 69-1]
 gi|301021131|ref|ZP_07185171.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 196-1]
 gi|301046090|ref|ZP_07193268.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 185-1]
 gi|301305528|ref|ZP_07211620.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 124-1]
 gi|301325114|ref|ZP_07218648.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 78-1]
 gi|301643861|ref|ZP_07243892.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 146-1]
 gi|306816338|ref|ZP_07450476.1| 50S ribosomal protein L4 [Escherichia coli NC101]
 gi|307140002|ref|ZP_07499358.1| 50S ribosomal protein L4 [Escherichia coli H736]
 gi|307315102|ref|ZP_07594685.1| ribosomal protein L4/L1e [Escherichia coli W]
 gi|309785641|ref|ZP_07680272.1| 50S ribosomal protein L4 [Shigella dysenteriae 1617]
 gi|309794594|ref|ZP_07689016.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 145-7]
 gi|311277726|ref|YP_003939957.1| ribosomal protein L4/L1e [Enterobacter cloacae SCF1]
 gi|312968356|ref|ZP_07782566.1| 50S ribosomal protein L4 [Escherichia coli 2362-75]
 gi|312972420|ref|ZP_07786594.1| 50S ribosomal protein L4 [Escherichia coli 1827-70]
 gi|331644015|ref|ZP_08345144.1| ribosomal protein L4/L1 family protein [Escherichia coli H736]
 gi|331649116|ref|ZP_08350202.1| ribosomal protein L4/L1 family protein [Escherichia coli M605]
 gi|331654912|ref|ZP_08355911.1| ribosomal protein L4/L1 family protein [Escherichia coli M718]
 gi|331659609|ref|ZP_08360547.1| ribosomal protein L4/L1 family protein [Escherichia coli TA206]
 gi|331664932|ref|ZP_08365833.1| ribosomal protein L4/L1 family protein [Escherichia coli TA143]
 gi|331670148|ref|ZP_08370987.1| ribosomal protein L4/L1 family protein [Escherichia coli TA271]
 gi|331674821|ref|ZP_08375578.1| ribosomal protein L4/L1 family protein [Escherichia coli TA280]
 gi|331679388|ref|ZP_08380058.1| ribosomal protein L4/L1 family protein [Escherichia coli H591]
 gi|331684961|ref|ZP_08385547.1| ribosomal protein L4/L1 family protein [Escherichia coli H299]
 gi|46397662|sp|P60723|RL4_ECOLI RecName: Full=50S ribosomal protein L4
 gi|46397663|sp|P60724|RL4_ECOL6 RecName: Full=50S ribosomal protein L4
 gi|46397664|sp|P60725|RL4_ECO57 RecName: Full=50S ribosomal protein L4
 gi|46397665|sp|P60726|RL4_SALTY RecName: Full=50S ribosomal protein L4
 gi|46397666|sp|P60727|RL4_SALTI RecName: Full=50S ribosomal protein L4
 gi|75480349|sp|Q57J33|RL4_SALCH RecName: Full=50S ribosomal protein L4
 gi|81599606|sp|Q5PIV3|RL4_SALPA RecName: Full=50S ribosomal protein L4
 gi|109893636|sp|Q31VV7|RL4_SHIBS RecName: Full=50S ribosomal protein L4
 gi|109893637|sp|Q32B32|RL4_SHIDS RecName: Full=50S ribosomal protein L4
 gi|109893638|sp|Q3YWU0|RL4_SHISS RecName: Full=50S ribosomal protein L4
 gi|122422184|sp|Q1R604|RL4_ECOUT RecName: Full=50S ribosomal protein L4
 gi|122957940|sp|Q0TCE2|RL4_ECOL5 RecName: Full=50S ribosomal protein L4
 gi|166234654|sp|A8AQL8|RL4_CITK8 RecName: Full=50S ribosomal protein L4
 gi|166234664|sp|A1AGK6|RL4_ECOK1 RecName: Full=50S ribosomal protein L4
 gi|166234665|sp|A7MPH8|RL4_ENTS8 RecName: Full=50S ribosomal protein L4
 gi|166990947|sp|A7ZSK8|RL4_ECO24 RecName: Full=50S ribosomal protein L4
 gi|166990948|sp|A8A5C4|RL4_ECOHS RecName: Full=50S ribosomal protein L4
 gi|189029502|sp|B1IPY0|RL4_ECOLC RecName: Full=50S ribosomal protein L4
 gi|189042882|sp|A9MN48|RL4_SALAR RecName: Full=50S ribosomal protein L4
 gi|226730655|sp|B7MCT4|RL4_ECO45 RecName: Full=50S ribosomal protein L4
 gi|226730656|sp|B5YTP0|RL4_ECO5E RecName: Full=50S ribosomal protein L4
 gi|226730657|sp|B7NLN8|RL4_ECO7I RecName: Full=50S ribosomal protein L4
 gi|226730658|sp|B7M1N3|RL4_ECO8A RecName: Full=50S ribosomal protein L4
 gi|226730659|sp|B1X6H0|RL4_ECODH RecName: Full=50S ribosomal protein L4
 gi|226730660|sp|B7NDU0|RL4_ECOLU RecName: Full=50S ribosomal protein L4
 gi|226730661|sp|B6I233|RL4_ECOSE RecName: Full=50S ribosomal protein L4
 gi|226730662|sp|B1LHD3|RL4_ECOSM RecName: Full=50S ribosomal protein L4
 gi|226730664|sp|B7LRT5|RL4_ESCF3 RecName: Full=50S ribosomal protein L4
 gi|226730716|sp|B5F8F1|RL4_SALA4 RecName: Full=50S ribosomal protein L4
 gi|226730717|sp|B5FJL3|RL4_SALDC RecName: Full=50S ribosomal protein L4
 gi|226730718|sp|B5R290|RL4_SALEP RecName: Full=50S ribosomal protein L4
 gi|226730719|sp|B5RH16|RL4_SALG2 RecName: Full=50S ribosomal protein L4
 gi|226730720|sp|B4TKL4|RL4_SALHS RecName: Full=50S ribosomal protein L4
 gi|226730721|sp|B4SUT9|RL4_SALNS RecName: Full=50S ribosomal protein L4
 gi|226730722|sp|B5BGY5|RL4_SALPK RecName: Full=50S ribosomal protein L4
 gi|226730723|sp|B4TXE1|RL4_SALSV RecName: Full=50S ribosomal protein L4
 gi|226730726|sp|B2U2T7|RL4_SHIB3 RecName: Full=50S ribosomal protein L4
 gi|254803733|sp|B7UK43|RL4_ECO27 RecName: Full=50S ribosomal protein L4
 gi|254803734|sp|B7L4K8|RL4_ECO55 RecName: Full=50S ribosomal protein L4
 gi|254803735|sp|B7N1A3|RL4_ECO81 RecName: Full=50S ribosomal protein L4
 gi|254803751|sp|C0Q0B5|RL4_SALPC RecName: Full=50S ribosomal protein L4
 gi|259491555|sp|C4ZUH4|RL4_ECOBW RecName: Full=50S ribosomal protein L4
 gi|25294998|pir||AB1006 50S ribosomal chain protein L4 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|33357904|pdb|1P85|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted
           Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
           State Of E. Coli 70s Ribosome
 gi|33357932|pdb|1P86|C Chain C, Real Space Refined Coordinates Of The 50s Subunit Fitted
           Into The Low Resolution Cryo-Em Map Of The
           Initiation-Like State Of E. Coli 70s Ribosome
 gi|83754066|pdb|2AW4|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli At 3.5 A Resolution. This File Contains
           The 50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|83754122|pdb|2AWB|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli At 3.5 A Resolution. This File Contains
           The 50s Subunit Of The Second 70s Ribosome. The Entire
           Crystal Structure Contains Two 70s Ribosomes And Is
           Described In Remark 400.
 gi|116666575|pdb|1VS6|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With The Antibiotic
           Kasugamyin At 3.5a Resolution. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|116666627|pdb|1VS8|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With The Antibiotic
           Kasugamyin At 3.5a Resolution. This File Contains The
           30s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|118138095|pdb|2I2T|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The
           Anticodon Stem-Loop Of P-Site Trna. This File Contains
           The 50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|118138149|pdb|2I2V|E Chain E, Crystal Structure Of Ribosome With Messenger Rna And The
           Anticodon Stem-Loop Of P-Site Trna. This File Contains
           The 50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|119390349|pdb|2J28|E Chain E, Model Of E. Coli Srp Bound To 70s Rncs
 gi|157836052|pdb|2QOV|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Spectinomycin. This
           File Contains The 50s Subunit Of The First 70s Ribosome.
           The Entire Crystal Structure Contains Two 70s Ribosomes.
 gi|157836104|pdb|2QOX|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Spectinomycin. This
           File Contains The 50s Subunit Of The Second 70s
           Ribosome. The Entire Crystal Structure Contains Two 70s
           Ribosomes.
 gi|157836156|pdb|2QOZ|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Spectinomycin And
           Neomycin. This File Contains The 50s Subunit Of The
           First 70s Ribosome, With Neomycin Bound. The Entire
           Crystal Structure Contains Two 70s Ribosomes.
 gi|157836208|pdb|2QP1|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Spectinomycin And
           Neomycin. This File Contains The 50s Subunit Of The
           Second 70s Ribosome, With Neomycin Bound. The Entire
           Crystal Structure Contains Two 70s Ribosomes.
 gi|158429727|pdb|2QAM|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Neomycin. This File
           Contains The 50s Subunit Of The First 70s Ribosome, With
           Neomycin Bound. The Entire Crystal Structure Contains
           Two 70s Ribosomes And Is Described In Remark 400.
 gi|158429779|pdb|2QAO|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Neomycin. This File
           Contains The 50s Subunit Of The Second 70s Ribosome,
           With Neomycin Bound. The Entire Crystal Structure
           Contains Two 70s Ribosomes And Is Described In Remark
           400.
 gi|158429837|pdb|2QBA|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin. This File
           Contains The 50s Subunit Of The First 70s Ribosome, With
           Gentamicin Bound. The Entire Crystal Structure Contains
           Two 70s Ribosomes And Is Described In Remark 400.
 gi|158429889|pdb|2QBC|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin. This File
           Contains The 50s Subunit Of The Second 70s Ribosome,
           With Gentamicin Bound. The Entire Crystal Structure
           Contains Two 70s Ribosomes And Is Described In Remark
           400.
 gi|158429941|pdb|2QBE|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Ribosome Recycling
           Factor (Rrf). This File Contains The 50s Subunit Of The
           First 70s Ribosome, With Rrf Bound. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|158429994|pdb|2QBG|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Ribosome Recycling
           Factor (Rrf). This File Contains The 50s Subunit Of The
           Second 70s Ribosome, With Rrf Bound. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|158430047|pdb|2QBI|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin And Ribosome
           Recycling Factor (Rrf). This File Contains The 50s
           Subunit Of The First 70s Ribosome, With Gentamicin And
           Rrf Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 gi|158430100|pdb|2QBK|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin And Ribosome
           Recycling Factor (Rrf). This File Contains The 50s
           Subunit Of The Second 70s Ribosome, With Gentamicin And
           Rrf Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 gi|158431400|pdb|2Z4L|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Paromomycin And
           Ribosome Recycling Factor (Rrf). This File Contains The
           50s Subunit Of The First 70s Ribosome, With Paromomycin
           And Rrf Bound. The Entire Crystal Structure Contains Two
           70s Ribosomes And Is Described In Remark 400.
 gi|158431453|pdb|2Z4N|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Paromomycin And
           Ribosome Recycling Factor (Rrf). This File Contains The
           50s Subunit Of The Second 70s Ribosome, With Paromomycin
           And Rrf Bound. The Entire Crystal Structure Contains Two
           70s Ribosomes And Is Described In Remark 400.
 gi|168988735|pdb|2VHM|E Chain E, Structure Of Pdf Binding Helix In Complex With The
           Ribosome (Part 1 Of 4)
 gi|168988766|pdb|2VHN|E Chain E, Structure Of Pdf Binding Helix In Complex With The
           Ribosome. (Part 2 Of 4)
 gi|169404607|pdb|2RDO|E Chain E, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
 gi|197107305|pdb|3DF2|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Hygromycin B. This File
           Contains The 50s Subunit Of The First 70s Ribosome. The
           Entire Crystal Structure Contains Two 70s Ribosomes.
 gi|197107357|pdb|3DF4|E Chain E, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Hygromycin B. This File
           Contains The 50s Subunit Of The Second 70s Ribosome. The
           Entire Crystal Structure Contains Two 70s Ribosomes.
 gi|209870358|pdb|3BBX|E Chain E, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em
           Map 50s.Nc-Trna.Hsp15 Complex
 gi|224510763|pdb|3FIK|E Chain E, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
           Consists Of The 50s Subunit.
 gi|256032399|pdb|3E1B|1 Chain 1, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-
           Accommodation State
 gi|256032456|pdb|3E1D|1 Chain 1, Structure Of The 50s Subunit Of E. Coli Ribosome In Post-
           Accommodation State
 gi|257097346|pdb|3I1N|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097398|pdb|3I1P|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097452|pdb|3I1R|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097506|pdb|3I1T|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097561|pdb|3I20|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097616|pdb|3I22|E Chain E, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|290560336|pdb|3KCR|E Chain E, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
           Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
           In Pdb Entry 3kc4
 gi|294662254|pdb|2WWQ|E Chain E, E.Coli 70s Ribosome Stalled During Translation Of Tnac
           Leader Peptide. This File Contains The 50s, The P-Site
           Trna And The Tnac Leader Peptide (Part 2 Of 2).
 gi|308198359|pdb|1VT2|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Cem-101. This File Contains The 50s Subunit Of The
           Second 70s Ribosome.
 gi|308198733|pdb|3ORB|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Cem-101. This File Contains The 50s Subunit Of The First
           70s Ribosome Bound To Cem-101.
 gi|308388011|pdb|3OFQ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Erythromycin. This File Contains The 50s Subunit Of The
           Second 70s Ribosome.
 gi|308388042|pdb|3OFR|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Erythromycin. This File Contains The 50s Subunit Of The
           First 70s Ribosome With Erthromycin Bound.
 gi|309320069|pdb|3OFC|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Chloramphenicol. This File Contains The 50s Subunit Of
           The First 70s Ribosome With Chloramphenicol Bound.
 gi|309320100|pdb|3OFD|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Chloramphenicol. This File Contains The 50s Subunit Of
           The Second 70s Ribosome.
 gi|309320173|pdb|3OFZ|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Clindamycin. This File Contains The 50s Subunit Of The
           First 70s Ribosome Bound To Clindamycin.
 gi|309320204|pdb|3OG0|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Clindamycin. This File Contains The 50s Subunit Of The
           Second 70s Ribosome.
 gi|315113658|pdb|3OAS|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Telithromycin. This File Contains The 50s Subunit Of The
           Second 70s Ribosome.
 gi|315113689|pdb|3OAT|E Chain E, Crystal Structure Of The E. Coli Ribosome Bound To
           Telithromycin. This File Contains The 50s Subunit Of The
           First 70s Ribosome With Telithromycin Bound.
 gi|326634214|pdb|3IZT|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate
           Discrimination During Decoding. This Entry Contains The
           Large Subunit Of A Ribosome Programmed With A
           Near-Cognate Codon.
 gi|326634247|pdb|3IZU|F Chain F, Structural Insights Into Cognate Vs. Near-Cognate
           Discrimination During Decoding. This Entry Contains The
           Large Subunit Of A Ribosome Programmed With A Cognate
           Codon
 gi|329666020|pdb|3J01|E Chain E, Structure Of The Ribosome-Secye Complex In The Membrane
           Environment
 gi|12517951|gb|AAG58440.1|AE005557_9 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Escherichia coli O157:H7 str. EDL933]
 gi|26110341|gb|AAN82527.1|AE016767_287 50S ribosomal protein L4 [Escherichia coli CFT073]
 gi|42828|emb|CAA26461.1| unnamed protein product [Escherichia coli]
 gi|606253|gb|AAA58116.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789715|gb|AAC76344.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12
           substr. MG1655]
 gi|13363657|dbj|BAB37607.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Escherichia coli O157:H7 str. Sakai]
 gi|16421996|gb|AAL22302.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16505150|emb|CAD08174.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139969|gb|AAO71533.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129615|gb|AAV79121.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129576|gb|AAX67279.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|73857315|gb|AAZ90022.1| 50S ribosomal subunit protein L4 [Shigella sonnei Ss046]
 gi|81242763|gb|ABB63473.1| 50S ribosomal subunit protein L4 [Shigella dysenteriae Sd197]
 gi|81247093|gb|ABB67801.1| 50S ribosomal subunit protein L4 [Shigella boydii Sb227]
 gi|85676722|dbj|BAE77972.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K12 substr.
           W3110]
 gi|91074329|gb|ABE09210.1| 50S ribosomal subunit protein L4 [Escherichia coli UTI89]
 gi|110345150|gb|ABG71387.1| 50S ribosomal protein L4 [Escherichia coli 536]
 gi|115514721|gb|ABJ02796.1| 50S ribosomal protein L4 [Escherichia coli APEC O1]
 gi|156530487|gb|ABU75313.1| hypothetical protein ESA_00004 [Cronobacter sakazakii ATCC BAA-894]
 gi|157068473|gb|ABV07728.1| ribosomal protein L4 [Escherichia coli HS]
 gi|157078119|gb|ABV17827.1| ribosomal protein L4 [Escherichia coli E24377A]
 gi|157086104|gb|ABV15782.1| hypothetical protein CKO_04737 [Citrobacter koseri ATCC BAA-895]
 gi|160867354|gb|ABX23977.1| hypothetical protein SARI_04188 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|169753373|gb|ACA76072.1| ribosomal protein L4/L1e [Escherichia coli ATCC 8739]
 gi|169890673|gb|ACB04380.1| 50S ribosomal subunit protein L4 [Escherichia coli str. K-12
           substr. DH10B]
 gi|170121604|gb|EDS90535.1| ribosomal protein L4 [Escherichia albertii TW07627]
 gi|170517356|gb|ACB15534.1| ribosomal protein L4 [Escherichia coli SMS-3-5]
 gi|187429949|gb|ACD09223.1| ribosomal protein L4 [Shigella boydii CDC 3083-94]
 gi|187766785|gb|EDU30629.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4196]
 gi|188013517|gb|EDU51639.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4113]
 gi|188488294|gb|EDU63397.1| ribosomal protein L4 [Escherichia coli 53638]
 gi|188998466|gb|EDU67464.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4076]
 gi|189359198|gb|EDU77617.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4401]
 gi|189361739|gb|EDU80158.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4486]
 gi|189374367|gb|EDU92783.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC869]
 gi|194404489|gb|ACF64711.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194405929|gb|ACF66148.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194416295|gb|EDX32499.1| ribosomal protein L4 [Shigella dysenteriae 1012]
 gi|194458751|gb|EDX47590.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194712014|gb|ACF91235.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195628920|gb|EDX48330.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197095765|emb|CAR61335.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212604|gb|ACH50001.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197240416|gb|EDY23036.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197938244|gb|ACH75577.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199603649|gb|EDZ02194.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205274714|emb|CAR39770.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205350182|gb|EDZ36813.1| ribosomal protein L4 [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206710484|emb|CAR34842.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|208725425|gb|EDZ75026.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4206]
 gi|208735183|gb|EDZ83870.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4045]
 gi|208739965|gb|EDZ87647.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4042]
 gi|209159951|gb|ACI37384.1| ribosomal protein L4 [Escherichia coli O157:H7 str. EC4115]
 gi|209757048|gb|ACI76836.1| 50S ribosomal subunit protein L4 [Escherichia coli]
 gi|209757050|gb|ACI76837.1| 50S ribosomal subunit protein L4 [Escherichia coli]
 gi|209757052|gb|ACI76838.1| 50S ribosomal subunit protein L4 [Escherichia coli]
 gi|209757054|gb|ACI76839.1| 50S ribosomal subunit protein L4 [Escherichia coli]
 gi|209757056|gb|ACI76840.1| 50S ribosomal subunit protein L4 [Escherichia coli]
 gi|209914044|dbj|BAG79118.1| 50S ribosomal protein L4 [Escherichia coli SE11]
 gi|215266691|emb|CAS11130.1| 50S ribosomal subunit protein L4 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322658|gb|EEC31082.1| ribosomal protein L4 [Escherichia coli O157:H7 str. TW14588]
 gi|218353743|emb|CAV00036.1| 50S ribosomal subunit protein L4 [Escherichia coli 55989]
 gi|218358135|emb|CAQ90782.1| 50S ribosomal subunit protein L4 [Escherichia fergusonii ATCC
           35469]
 gi|218362644|emb|CAR00270.1| 50S ribosomal subunit protein L4 [Escherichia coli IAI1]
 gi|218367149|emb|CAR04923.1| 50S ribosomal subunit protein L4 [Escherichia coli S88]
 gi|218372067|emb|CAR19927.1| 50S ribosomal subunit protein L4 [Escherichia coli IAI39]
 gi|218429169|emb|CAR10121.2| 50S ribosomal subunit protein L4 [Escherichia coli ED1a]
 gi|218434023|emb|CAR14940.1| 50S ribosomal subunit protein L4 [Escherichia coli UMN026]
 gi|222035028|emb|CAP77771.1| 50S ribosomal protein L4 [Escherichia coli LF82]
 gi|224469762|gb|ACN47592.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|226902313|gb|EEH88572.1| 50S ribosomal subunit protein L4 [Escherichia sp. 3_2_53FAA]
 gi|227839594|gb|EEJ50060.1| 50S ribosomal protein L4 [Escherichia coli 83972]
 gi|238859876|gb|ACR61874.1| 50S ribosomal subunit protein L4 [Escherichia coli BW2952]
 gi|242378846|emb|CAQ33638.1| 50S ribosomal subunit protein L4, subunit of 50S ribosomal subunit
           and ribosome [Escherichia coli BL21(DE3)]
 gi|253322901|gb|ACT27503.1| ribosomal protein L4/L1e [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975148|gb|ACT40819.1| 50S ribosomal protein L4 [Escherichia coli B str. REL606]
 gi|253979304|gb|ACT44974.1| 50S ribosomal protein L4 [Escherichia coli BL21(DE3)]
 gi|254594656|gb|ACT74017.1| 50S ribosomal subunit protein L4 [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756089|dbj|BAI27591.1| 50S ribosomal subunit protein L4 [Escherichia coli O26:H11 str.
           11368]
 gi|257761264|dbj|BAI32761.1| 50S ribosomal subunit protein L4 [Escherichia coli O103:H2 str.
           12009]
 gi|257766418|dbj|BAI37913.1| 50S ribosomal subunit protein L4 [Escherichia coli O111:H- str.
           11128]
 gi|260218815|emb|CBA34170.1| 50S ribosomal protein L4 [Cronobacter turicensis z3032]
 gi|260447662|gb|ACX38084.1| ribosomal protein L4/L1e [Escherichia coli DH1]
 gi|261248595|emb|CBG26433.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995648|gb|ACY90533.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|281180354|dbj|BAI56684.1| 50S ribosomal protein L4 [Escherichia coli SE15]
 gi|282951499|emb|CBG91198.1| 50S ribosomal subunit protein L4 [Citrobacter rodentium ICC168]
 gi|284923325|emb|CBG36419.1| 50S ribosomal subunit protein L4 [Escherichia coli 042]
 gi|290764550|gb|ADD58511.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. CB9615]
 gi|291068415|gb|EFE06524.1| ribosomal protein L4/L1 family protein [Citrobacter youngae ATCC
           29220]
 gi|291321763|gb|EFE61194.1| 50S ribosomal protein L4/L1 [Escherichia coli B088]
 gi|291425727|gb|EFE98761.1| 50S ribosomal protein L4 [Escherichia coli FVEC1412]
 gi|291431312|gb|EFF04297.1| 50S ribosomal protein L4/L1 [Escherichia coli B185]
 gi|291468385|gb|EFF10878.1| 50S ribosomal protein L4/L1 [Escherichia coli B354]
 gi|294490448|gb|ADE89204.1| ribosomal protein L4 [Escherichia coli IHE3034]
 gi|295096960|emb|CBK86050.1| LSU ribosomal protein L4P [Enterobacter cloacae subsp. cloacae NCTC
           9394]
 gi|298276492|gb|EFI18010.1| 50S ribosomal protein L4 [Escherichia coli FVEC1302]
 gi|299881661|gb|EFI89872.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 196-1]
 gi|300301916|gb|EFJ58301.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 185-1]
 gi|300309008|gb|EFJ63528.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 200-1]
 gi|300318235|gb|EFJ68019.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 175-1]
 gi|300359498|gb|EFJ75368.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 198-1]
 gi|300399527|gb|EFJ83065.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 69-1]
 gi|300404440|gb|EFJ87978.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 84-1]
 gi|300409401|gb|EFJ92939.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 45-1]
 gi|300414553|gb|EFJ97863.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 115-1]
 gi|300421720|gb|EFK05031.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 182-1]
 gi|300453787|gb|EFK17407.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 116-1]
 gi|300459473|gb|EFK22966.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 21-1]
 gi|300460036|gb|EFK23529.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 187-1]
 gi|300524644|gb|EFK45713.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 119-7]
 gi|300532363|gb|EFK53425.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 107-1]
 gi|300839223|gb|EFK66983.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 124-1]
 gi|300847993|gb|EFK75753.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 78-1]
 gi|301077764|gb|EFK92570.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 146-1]
 gi|301159982|emb|CBW19501.1| 50S ribosomal subunit protein L4 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305850734|gb|EFM51191.1| 50S ribosomal protein L4 [Escherichia coli NC101]
 gi|306905451|gb|EFN35986.1| ribosomal protein L4/L1e [Escherichia coli W]
 gi|307555406|gb|ADN48181.1| 50S ribosomal subunit protein L4 [Escherichia coli ABU 83972]
 gi|307628354|gb|ADN72658.1| 50S ribosomal protein L4 [Escherichia coli UM146]
 gi|308121644|gb|EFO58906.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 145-7]
 gi|308746921|gb|ADO46673.1| ribosomal protein L4/L1e [Enterobacter cloacae SCF1]
 gi|308926761|gb|EFP72237.1| 50S ribosomal protein L4 [Shigella dysenteriae 1617]
 gi|309703731|emb|CBJ03072.1| 50S ribosomal subunit protein L4 [Escherichia coli ETEC H10407]
 gi|310334797|gb|EFQ01002.1| 50S ribosomal protein L4 [Escherichia coli 1827-70]
 gi|312287181|gb|EFR15091.1| 50S ribosomal protein L4 [Escherichia coli 2362-75]
 gi|312914462|dbj|BAJ38436.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|312947870|gb|ADR28697.1| 50S ribosomal protein L4 [Escherichia coli O83:H1 str. NRG 857C]
 gi|315062611|gb|ADT76938.1| 50S ribosomal subunit protein L4 [Escherichia coli W]
 gi|315137894|dbj|BAJ45053.1| 50S ribosomal protein L4 [Escherichia coli DH1]
 gi|315255902|gb|EFU35870.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 85-1]
 gi|315284606|gb|EFU44051.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 110-3]
 gi|315292364|gb|EFU51716.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 153-1]
 gi|315298617|gb|EFU57872.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 16-3]
 gi|315616996|gb|EFU97608.1| 50S ribosomal protein L4 [Escherichia coli 3431]
 gi|320087884|emb|CBY97647.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|320173960|gb|EFW49136.1| LSU ribosomal protein L4p (L1e) [Shigella dysenteriae CDC 74-1112]
 gi|320180153|gb|EFW55092.1| LSU ribosomal protein L4p (L1e) [Shigella boydii ATCC 9905]
 gi|320187037|gb|EFW61749.1| LSU ribosomal protein L4p (L1e) [Shigella flexneri CDC 796-83]
 gi|320191650|gb|EFW66300.1| LSU ribosomal protein L4p (L1e) [Escherichia coli O157:H7 str.
           EC1212]
 gi|320199503|gb|EFW74093.1| LSU ribosomal protein L4p (L1e) [Escherichia coli EC4100B]
 gi|320639624|gb|EFX09218.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. G5101]
 gi|320645122|gb|EFX14138.1| 50S ribosomal protein L4 [Escherichia coli O157:H- str. 493-89]
 gi|320650433|gb|EFX18899.1| 50S ribosomal protein L4 [Escherichia coli O157:H- str. H 2687]
 gi|320655958|gb|EFX23878.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661410|gb|EFX28825.1| 50S ribosomal protein L4 [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666432|gb|EFX33415.1| 50S ribosomal protein L4 [Escherichia coli O157:H7 str. LSU-61]
 gi|321226486|gb|EFX51536.1| LSU ribosomal protein L4p (L1e) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615020|gb|EFY11944.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617307|gb|EFY14208.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625529|gb|EFY22354.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626371|gb|EFY23180.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632117|gb|EFY28870.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635004|gb|EFY31727.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643295|gb|EFY39862.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646621|gb|EFY43128.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649967|gb|EFY46386.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652684|gb|EFY49024.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659559|gb|EFY55803.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665499|gb|EFY61686.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670393|gb|EFY66532.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670466|gb|EFY66600.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675042|gb|EFY71125.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681579|gb|EFY77608.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685923|gb|EFY81912.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716430|gb|EFZ08001.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323131797|gb|ADX19227.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323154157|gb|EFZ40360.1| 50S ribosomal protein L4 [Escherichia coli EPECa14]
 gi|323162998|gb|EFZ48833.1| 50S ribosomal protein L4 [Escherichia coli E128010]
 gi|323173955|gb|EFZ59583.1| 50S ribosomal protein L4 [Escherichia coli LT-68]
 gi|323179145|gb|EFZ64719.1| 50S ribosomal protein L4 [Escherichia coli 1180]
 gi|323182797|gb|EFZ68198.1| 50S ribosomal protein L4 [Escherichia coli 1357]
 gi|323194031|gb|EFZ79231.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196451|gb|EFZ81602.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202310|gb|EFZ87355.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207341|gb|EFZ92291.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211223|gb|EFZ96068.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216068|gb|EGA00799.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223441|gb|EGA07769.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226829|gb|EGA11019.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231809|gb|EGA15919.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233238|gb|EGA17333.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237305|gb|EGA21370.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245540|gb|EGA29539.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249046|gb|EGA32968.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250669|gb|EGA34550.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256898|gb|EGA40612.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263047|gb|EGA46594.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266047|gb|EGA49542.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272804|gb|EGA56207.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|323376802|gb|ADX49070.1| ribosomal protein L4/L1e [Escherichia coli KO11]
 gi|323934483|gb|EGB30891.1| ribosomal protein L4/L1 family protein [Escherichia coli E1520]
 gi|323939259|gb|EGB35471.1| ribosomal protein L4/L1 family protein [Escherichia coli E482]
 gi|323944260|gb|EGB40336.1| ribosomal protein L4/L1 family protein [Escherichia coli H120]
 gi|323950233|gb|EGB46115.1| ribosomal protein L4/L1 family protein [Escherichia coli H252]
 gi|323954558|gb|EGB50341.1| ribosomal protein L4/L1 family protein [Escherichia coli H263]
 gi|323959530|gb|EGB55183.1| ribosomal protein L4/L1 family protein [Escherichia coli H489]
 gi|323966281|gb|EGB61716.1| ribosomal protein L4/L1 family protein [Escherichia coli M863]
 gi|323970123|gb|EGB65397.1| ribosomal protein L4/L1 family protein [Escherichia coli TA007]
 gi|323974728|gb|EGB69841.1| ribosomal protein L4/L1 family protein [Escherichia coli TW10509]
 gi|324009010|gb|EGB78229.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 57-2]
 gi|324014935|gb|EGB84154.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 60-1]
 gi|324017863|gb|EGB87082.1| ribosomal protein L4/L1 family protein [Escherichia coli MS 117-3]
 gi|324111998|gb|EGC05977.1| ribosomal protein L4/L1 family protein [Escherichia fergusonii
           B253]
 gi|324116291|gb|EGC10211.1| ribosomal protein L4/L1 family protein [Escherichia coli E1167]
 gi|325498884|gb|EGC96743.1| 50S ribosomal protein L4 [Escherichia fergusonii ECD227]
 gi|326344551|gb|EGD68300.1| LSU ribosomal protein L4p (L1e) [Escherichia coli O157:H7 str.
           1125]
 gi|326625182|gb|EGE31527.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326630082|gb|EGE36425.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|327250967|gb|EGE62660.1| 50S ribosomal protein L4 [Escherichia coli STEC_7v]
 gi|330909361|gb|EGH37875.1| LSU ribosomal protein L4p (L1e) [Escherichia coli AA86]
 gi|331036309|gb|EGI08535.1| ribosomal protein L4/L1 family protein [Escherichia coli H736]
 gi|331041614|gb|EGI13758.1| ribosomal protein L4/L1 family protein [Escherichia coli M605]
 gi|331046927|gb|EGI19005.1| ribosomal protein L4/L1 family protein [Escherichia coli M718]
 gi|331052824|gb|EGI24857.1| ribosomal protein L4/L1 family protein [Escherichia coli TA206]
 gi|331057442|gb|EGI29428.1| ribosomal protein L4/L1 family protein [Escherichia coli TA143]
 gi|331062210|gb|EGI34130.1| ribosomal protein L4/L1 family protein [Escherichia coli TA271]
 gi|331067730|gb|EGI39128.1| ribosomal protein L4/L1 family protein [Escherichia coli TA280]
 gi|331072560|gb|EGI43885.1| ribosomal protein L4/L1 family protein [Escherichia coli H591]
 gi|331077332|gb|EGI48544.1| ribosomal protein L4/L1 family protein [Escherichia coli H299]
 gi|332085470|gb|EGI90636.1| 50S ribosomal protein L4 [Shigella boydii 5216-82]
 gi|332085827|gb|EGI90991.1| 50S ribosomal protein L4 [Shigella dysenteriae 155-74]
 gi|332090535|gb|EGI95633.1| 50S ribosomal protein L4 [Shigella boydii 3594-74]
 gi|332104226|gb|EGJ07572.1| 50S ribosomal subunit protein L4 [Shigella sp. D9]
 gi|223250|prf||0701225A ribosomal protein L4
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|329298532|ref|ZP_08255868.1| 50S ribosomal protein L4 [Plautia stali symbiont]
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAACARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK LV + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVESFSVEAPKTKLLVQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTAEAVKQVEEML 200


>gi|323189076|gb|EFZ74360.1| 50S ribosomal protein L4 [Escherichia coli RN587/1]
          Length = 201

 Score =  179 bits (454), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTVDAVKQVEEML 200


>gi|150008983|ref|YP_001303726.1| 50S ribosomal protein L4 [Parabacteroides distasonis ATCC 8503]
 gi|255014814|ref|ZP_05286940.1| 50S ribosomal protein L4 [Bacteroides sp. 2_1_7]
 gi|256841016|ref|ZP_05546523.1| ribosomal protein L4/L1 [Parabacteroides sp. D13]
 gi|262383873|ref|ZP_06077009.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 2_1_33B]
 gi|298375784|ref|ZP_06985740.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_19]
 gi|301312032|ref|ZP_07217954.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 20_3]
 gi|166234697|sp|A6LEJ0|RL4_PARD8 RecName: Full=50S ribosomal protein L4
 gi|149937407|gb|ABR44104.1| 50S ribosomal protein L4 [Parabacteroides distasonis ATCC 8503]
 gi|256736859|gb|EEU50186.1| ribosomal protein L4/L1 [Parabacteroides sp. D13]
 gi|262294771|gb|EEY82703.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 2_1_33B]
 gi|298266821|gb|EFI08478.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_19]
 gi|300830134|gb|EFK60782.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 20_3]
          Length = 209

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 112/208 (53%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELSV N+ GED G  +++++ IF ++P    +   ++     +R G  KSK RSEV+ +
Sbjct: 1   MELSVFNIKGEDTGRKVTLNDAIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERSEVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+SLA + ALS K  +
Sbjct: 61  TRKLIRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYEFKLNKKVKSLARKSALSYKAKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  +T  +        L++   + +    L+ARN+   +++   
Sbjct: 121 NAIVVVEDFTMEAPKTKEFITIAKNLKVADKKLLMVLPEKNNLVYLSARNLEKASVITAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            +N Y +L    LVL++S++  +E  FK
Sbjct: 181 ELNTYAVLNAVNLVLTESSVAVVEQNFK 208


>gi|108761551|ref|YP_631499.1| 50S ribosomal protein L4 [Myxococcus xanthus DK 1622]
 gi|122388945|sp|Q1D774|RL4_MYXXD RecName: Full=50S ribosomal protein L4
 gi|108465431|gb|ABF90616.1| ribosomal protein L4 [Myxococcus xanthus DK 1622]
          Length = 207

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 99/206 (48%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +LD +    I +S+D+F  +P   +   V + Q   +R G    K  S V+  
Sbjct: 1   MAKFDVVDLDLKKVSEIELSDDVFGTEPNAHLFYEVAKMQQINRRRGTVGVKNTSLVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   S + GGGKA  P      +  P+KVR  AL+ ALS +   
Sbjct: 61  GKKPWKQKGTGRARQGSIRASHWVGGGKAMAPKARDYFYRPPRKVRRGALKSALSLRAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++D       K+K               ++   + + N   + RN+   ++LP +G
Sbjct: 121 KTLIILDGFSLDAPKSKQAFEVLTKRLKLQNALVIDDKGNTNLHRSVRNLAKFDVLPPEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+  +LR S LVL+ +A + LE   
Sbjct: 181 LNLEAVLRHSHLVLTSAAAKTLEGAL 206


>gi|298483065|ref|ZP_07001246.1| ribosomal protein L4/L1 family protein [Bacteroides sp. D22]
 gi|298270809|gb|EFI12389.1| ribosomal protein L4/L1 family protein [Bacteroides sp. D22]
          Length = 208

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  +S++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVSLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI   N+  + 
Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++++++A+++  
Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDNIL 207


>gi|294669825|ref|ZP_06734884.1| hypothetical protein NEIELOOT_01718 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308218|gb|EFE49461.1| hypothetical protein NEIELOOT_01718 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 206

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+  G +S S+ +FA +  + ++ +++       R G      R+EV ++ 
Sbjct: 1   MELKIINAQGQISGALSASDALFAREYNEALVHQLVTAFLANARSGNRAQLTRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       + +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++ L     KTK    + + L L   L +   QLD N  LA+RN+PN+ +L V  
Sbjct: 121 ERLYVVEELAVATPKTKEFAGQVKNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEVHQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++ Y +LR  K+V ++ AI  LE+++
Sbjct: 180 VDPYSLLRYKKVVFTRDAIAQLEEQW 205


>gi|238758765|ref|ZP_04619939.1| 50S ribosomal protein L4 [Yersinia aldovae ATCC 35236]
 gi|238792939|ref|ZP_04636569.1| 50S ribosomal protein L4 [Yersinia intermedia ATCC 29909]
 gi|238703062|gb|EEP95605.1| 50S ribosomal protein L4 [Yersinia aldovae ATCC 35236]
 gi|238727793|gb|EEQ19317.1| 50S ribosomal protein L4 [Yersinia intermedia ATCC 29909]
          Length = 201

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK L  + + + L + LI+ G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|269128515|ref|YP_003301885.1| 50S ribosomal protein L4/L1e [Thermomonospora curvata DSM 43183]
 gi|268313473|gb|ACY99847.1| ribosomal protein L4/L1e [Thermomonospora curvata DSM 43183]
          Length = 204

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  +IF  K    ++ +V+  Q    R G   +K R +V   G K Y QKGTGRAR 
Sbjct: 5   DVELPAEIFDAKVSVPLIHQVVVAQWAAARQGTHATKTRGDVRGGGKKPYRQKGTGRARQ 64

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKEC 134
            S    QF GGG   GP P       PKK+++ ALR AL+D+     I V+D+ +  +  
Sbjct: 65  GSVRAPQFAGGGTVHGPQPRDYTQRTPKKMKAAALRGALTDRARHGRIHVVDHLIEGEVP 124

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
           KTK  +   R +  +  +++   + D     + RN P+++LL    +N YD++    +V 
Sbjct: 125 KTKVALAALREITQAKRVLVVTARGDELTWKSLRNEPSVHLLFEDQLNTYDVMVSDDVVF 184

Query: 195 SKSAIEALEDR 205
           +K+A +A   R
Sbjct: 185 TKAAYDAFIAR 195


>gi|227328948|ref|ZP_03832972.1| 50S ribosomal protein L4 [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 201

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|221632977|ref|YP_002522200.1| 50S ribosomal protein L4/L1 family [Thermomicrobium roseum DSM
           5159]
 gi|221156742|gb|ACM05869.1| ribosomal protein L4/L1 family [Thermomicrobium roseum DSM 5159]
          Length = 212

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V +L+G     I +++ +F + P   ++ + L  Q    R G   +K R EV   G
Sbjct: 1   MQVPVYDLEGRAVDQIELADSVFGITPNIPVMHQALVRQLANARAGTHDTKTRGEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     ++GGG  +GP P      +PKK+R LA+R  LS K   N
Sbjct: 61  RKPWRQKGTGRARQGSIRAPHWKGGGVVWGPHPRSYRQEMPKKMRRLAIRSLLSVKQREN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            I+V+  L   E KTK +    + L    + + +I   Q   N + AA N+ ++ +L   
Sbjct: 121 QIVVVRGLTDIEPKTKVMKGVLQRLPLATARSTLIVVDQRRDNVRRAAGNLEDVKVLVAH 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N+ D L+  +++L+  A+E +
Sbjct: 181 NMNIRDGLKYERMILTPEAVEVI 203


>gi|167626038|ref|YP_001676332.1| 50S ribosomal protein L4 [Shewanella halifaxensis HAW-EB4]
 gi|189042884|sp|B0TM11|RL4_SHEHH RecName: Full=50S ribosomal protein L4
 gi|167356060|gb|ABZ78673.1| ribosomal protein L4/L1e [Shewanella halifaxensis HAW-EB4]
          Length = 201

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSEATFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F          + KK+   AL+   S+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++      KTK L  +  A+ L +  +I   ++D N  LAARN+  +++  V G+
Sbjct: 117 RLIVVESFGVDAPKTKELKAKLDAMQLQDV-LIVTPEVDENLFLAARNLYKVDVRDVAGV 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  AI+ +E+  
Sbjct: 176 DPVSLIAFDKVLVTAEAIKQIEEML 200


>gi|257095039|ref|YP_003168680.1| 50S ribosomal protein L4 [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047563|gb|ACV36751.1| ribosomal protein L4/L1e [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 206

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G++   +  S+ +F  +  + ++ +VL       R G    K R +V +T 
Sbjct: 1   MELKLINEQGQEASRLEASDALFGREYNEALVHQVLVAYQANARSGNRAQKDRQDVRHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       L +K+    +   LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPIWRGGGRVFPSSPDENFSQKLNRKMYRAGMAAILSQLVRQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V+D L     KTK    + + +    ++++    LD N  LAARN+PN+ +L V  
Sbjct: 121 DRLAVVDTLSIAAPKTKLFAAKIKDMG-YESVLVITDDLDENVFLAARNLPNVLVLEVSQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K A+   E+  
Sbjct: 180 TDPVSLIHFPKVLVTKGALAKFEEIL 205


>gi|160883063|ref|ZP_02064066.1| hypothetical protein BACOVA_01026 [Bacteroides ovatus ATCC 8483]
 gi|237718742|ref|ZP_04549223.1| 50S ribosomal protein L4 [Bacteroides sp. 2_2_4]
 gi|299144623|ref|ZP_07037691.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_23]
 gi|156111535|gb|EDO13280.1| hypothetical protein BACOVA_01026 [Bacteroides ovatus ATCC 8483]
 gi|229451874|gb|EEO57665.1| 50S ribosomal protein L4 [Bacteroides sp. 2_2_4]
 gi|298515114|gb|EFI38995.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 3_1_23]
          Length = 208

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI   N+  + 
Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++++++A+++  
Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDNIL 207


>gi|157828859|ref|YP_001495101.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933586|ref|YP_001650375.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Iowa]
 gi|166199858|sp|A8GT68|RL4_RICRS RecName: Full=50S ribosomal protein L4
 gi|189042881|sp|B0BUQ9|RL4_RICRO RecName: Full=50S ribosomal protein L4
 gi|157801340|gb|ABV76593.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908673|gb|ABY72969.1| LSU ribosomal protein L1E (= L4P) [Rickettsia rickettsii str. Iowa]
          Length = 207

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G IS++EDIFA++  +  I+ +V+ WQ  +   G  K+K  SEV  T
Sbjct: 1   MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP        LPKKVR L L HALS+K   
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT  LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 121 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVVVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207


>gi|237717400|ref|ZP_04547881.1| 50S ribosomal protein L4 [Bacteroides sp. D1]
 gi|262406165|ref|ZP_06082715.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_22]
 gi|294644060|ref|ZP_06721837.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CC
           2a]
 gi|294807316|ref|ZP_06766129.1| ribosomal protein L4/L1 family protein [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229443383|gb|EEO49174.1| 50S ribosomal protein L4 [Bacteroides sp. D1]
 gi|262357040|gb|EEZ06130.1| ribosomal protein L4/L1 [Bacteroides sp. 2_1_22]
 gi|292640584|gb|EFF58825.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CC
           2a]
 gi|294445481|gb|EFG14135.1| ribosomal protein L4/L1 family protein [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 208

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI   N+  + 
Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++++++A+++  
Sbjct: 181 GLNTYRVLNAGVIVLTENSLKAIDNIL 207


>gi|209364189|ref|YP_001425181.2| 50S ribosomal protein L4 [Coxiella burnetii Dugway 5J108-111]
 gi|207082122|gb|ABS76582.2| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii Dugway
           5J108-111]
          Length = 206

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+EL V + D ++   ++V++  F  + ++G++ +V+       R G    K R EV+ +
Sbjct: 1   MMELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S     +R GG AF   P      + +K+   A+   LS+    
Sbjct: 61  GAKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRR 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+L   E KT+ L    + L+L N LII     DRN  LA+RN+  +++     
Sbjct: 121 EQLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD-DRNINLASRNMVGVSVCDALH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++   ++    +V++  A++ LE+R 
Sbjct: 180 VDPVSLVAAENIVVTVDAVKRLEERL 205


>gi|124268626|ref|YP_001022630.1| 50S ribosomal protein L4 [Methylibium petroleiphilum PM1]
 gi|166234685|sp|A2SLF6|RL4_METPP RecName: Full=50S ribosomal protein L4
 gi|124261401|gb|ABM96395.1| LSU ribosomal protein L4P [Methylibium petroleiphilum PM1]
          Length = 206

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 100/206 (48%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+    +   + +F     + ++ +V+       R G    K R  V ++ 
Sbjct: 1   MELELLNEQGQAASKVDAPDTVFGRDYNEALVHQVVVAYQANARQGTRAQKDRQTVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    +    S     
Sbjct: 61  KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSHKVNKKMYRAGMAAIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D++  +  KTK L  +F+A+    ++++   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSIKVETPKTKALAAKFKAMG-LESVLVIADEVDENLFLASRNLANVLVIEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AIE L++  
Sbjct: 180 ADPLSLVFYKKVLVTKGAIEKLKEML 205


>gi|304399290|ref|ZP_07381156.1| ribosomal protein L4/L1e [Pantoea sp. aB]
 gi|308188356|ref|YP_003932487.1| 50S ribosomal protein L4 [Pantoea vagans C9-1]
 gi|304353216|gb|EFM17597.1| ribosomal protein L4/L1e [Pantoea sp. aB]
 gi|308058866|gb|ADO11038.1| 50S ribosomal protein L4 [Pantoea vagans C9-1]
          Length = 201

 Score =  179 bits (453), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYASGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK LV + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVESFAVEAPKTKLLVQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDASGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|189460685|ref|ZP_03009470.1| hypothetical protein BACCOP_01332 [Bacteroides coprocola DSM 17136]
 gi|189432644|gb|EDV01629.1| hypothetical protein BACCOP_01332 [Bacteroides coprocola DSM 17136]
          Length = 209

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF + P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVLNIKGEDTGRKVALNEAIFGITPNDHAIYLDVKQYMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + AL+ K  +
Sbjct: 61  TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYWFKLNKKVKTLARKSALAYKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+++   +  KTK  V            L++   + ++N  L+ARN+   NL    
Sbjct: 121 NNIVVVEDFTFEAPKTKEFVNVVNNLKVAGKKLLMVLPEANKNVYLSARNLERTNLAIAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV+++SA++A+E+  
Sbjct: 181 ALNTYSVLNAETLVVTESALKAIEETL 207


>gi|28897032|ref|NP_796637.1| 50S ribosomal protein L4 [Vibrio parahaemolyticus RIMD 2210633]
 gi|91229294|ref|ZP_01262911.1| 50S ribosomal protein L4 [Vibrio alginolyticus 12G01]
 gi|153840338|ref|ZP_01993005.1| ribosomal protein L4/L1 family [Vibrio parahaemolyticus AQ3810]
 gi|260877950|ref|ZP_05890305.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AN-5034]
 gi|260897590|ref|ZP_05906086.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus Peru-466]
 gi|260899520|ref|ZP_05907915.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AQ4037]
 gi|262392515|ref|YP_003284369.1| 50S ribosomal protein L4p [Vibrio sp. Ex25]
 gi|269964733|ref|ZP_06178971.1| 50S ribosomal protein L4 [Vibrio alginolyticus 40B]
 gi|46577240|sp|Q87T12|RL4_VIBPA RecName: Full=50S ribosomal protein L4
 gi|28805240|dbj|BAC58521.1| ribosomal protein L4 [Vibrio parahaemolyticus RIMD 2210633]
 gi|91187419|gb|EAS73767.1| 50S ribosomal protein L4 [Vibrio alginolyticus 12G01]
 gi|149745996|gb|EDM57126.1| ribosomal protein L4/L1 family [Vibrio parahaemolyticus AQ3810]
 gi|262336109|gb|ACY49904.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. Ex25]
 gi|269830632|gb|EEZ84853.1| 50S ribosomal protein L4 [Vibrio alginolyticus 40B]
 gi|308087513|gb|EFO37208.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus Peru-466]
 gi|308090091|gb|EFO39786.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AN-5034]
 gi|308108798|gb|EFO46338.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus AQ4037]
 gi|328471835|gb|EGF42712.1| 50S ribosomal protein L4 [Vibrio parahaemolyticus 10329]
          Length = 200

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEEML 199


>gi|157804034|ref|YP_001492583.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel]
 gi|166199857|sp|A8EZL5|RL4_RICCK RecName: Full=50S ribosomal protein L4
 gi|157785297|gb|ABV73798.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel]
          Length = 207

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G IS+++DIFA++  +  I+ +V+ WQ  +   G  K+K  SEV+ T
Sbjct: 1   MKTKILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP+       LPKKVR L L HALS+KF  
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGLAHGPIVRSHATQLPKKVRKLGLIHALSEKFAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT +LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 121 GKLLVIDSLKLDKPKTSFLVNILNKFQGQSFFVIDGNEVDINFSLAAKNIYNTVIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVNVLEERLR 207


>gi|238913846|ref|ZP_04657683.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 201

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G  LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-DLDENLFLAARNLHKVDVRDATGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|229587008|ref|YP_002845509.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5]
 gi|259491567|sp|C3PPA6|RL4_RICAE RecName: Full=50S ribosomal protein L4
 gi|228022058|gb|ACP53766.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5]
          Length = 207

 Score =  178 bits (452), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G IS++EDIFA++  +  I+ +V+ WQ  +   G  K+K  SEV  T
Sbjct: 1   MKTKIFSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP        LPKKVR L L HALS+K   
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT  LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 121 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207


>gi|218245139|ref|YP_002370510.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 8801]
 gi|257058164|ref|YP_003136052.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 8802]
 gi|226730649|sp|B7K334|RL4_CYAP8 RecName: Full=50S ribosomal protein L4
 gi|218165617|gb|ACK64354.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 8801]
 gi|256588330|gb|ACU99216.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 8802]
          Length = 211

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   ++N  GE+ G  ++   +   +    I+ R L  Q    R G + +K R+EV   
Sbjct: 1   MVNCIIKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRLALRTALDSRIED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPV 178
             ++        + KTK LV+      +     +     ++  N QL+ARN+P I LL  
Sbjct: 121 LIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARNVPYIKLLKA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            G+NVYD+L   K+V +  A+  +++ +
Sbjct: 181 DGLNVYDLLVADKIVATAEALSKVQEVY 208


>gi|291619174|ref|YP_003521916.1| RplD [Pantoea ananatis LMG 20103]
 gi|291154204|gb|ADD78788.1| RplD [Pantoea ananatis LMG 20103]
 gi|327395505|dbj|BAK12927.1| 50S ribosomal protein L4 RplD [Pantoea ananatis AJ13355]
          Length = 201

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYASGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEQFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|120553653|ref|YP_958004.1| ribosomal protein L4/L1e [Marinobacter aquaeolei VT8]
 gi|166234682|sp|A1TYJ8|RL4_MARAV RecName: Full=50S ribosomal protein L4
 gi|120323502|gb|ABM17817.1| LSU ribosomal protein L4P [Marinobacter aquaeolei VT8]
          Length = 201

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 2/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
             + G  KG ISVS+  FA    + ++ +V+       R G    K RSEV+  G K + 
Sbjct: 3   LTITGSGKG-ISVSDAAFAKDFNEALVHQVVTAYMAAGRQGTKAQKTRSEVSGGGKKPWR 61

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +R GG  F   P      + +K+   A+R   S+      ++V+
Sbjct: 62  QKGTGRARAGTIRSPIWRSGGVTFAAKPRDFEQKVNRKMYRAAMRSIFSELVRQERLVVV 121

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           D++     KTK    +   L +SNA +I    +++N  LA+RN+P++++  V G++   +
Sbjct: 122 DDMNVDTPKTKAFTAKLSDLGVSNA-LILSENVEQNLHLASRNVPHVDVRDVAGLDPVSL 180

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K+V++  A++ +E+  
Sbjct: 181 VAFEKVVVTVPALKKIEEML 200


>gi|54307542|ref|YP_128562.1| 50S ribosomal protein L4 [Photobacterium profundum SS9]
 gi|90415163|ref|ZP_01223112.1| 50S ribosomal protein L4 [Photobacterium profundum 3TCK]
 gi|81615627|sp|Q6LVB5|RL4_PHOPR RecName: Full=50S ribosomal protein L4
 gi|46911962|emb|CAG18760.1| putative ribosomal protein L4 [Photobacterium profundum SS9]
 gi|90323710|gb|EAS40342.1| 50S ribosomal protein L4 [Photobacterium profundum 3TCK]
          Length = 200

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F     + ++ +V+   +   R G    K RS+V+  G
Sbjct: 1   MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPLWRTGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK L  + + LDLS+ LI+ G +LD N  LAARN+  +++     I
Sbjct: 116 RLIVVDNFSVEAPKTKELAAKLKELDLSDVLIVTG-ELDENLFLAARNLYKVDVRDAATI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++ +A++ +E+  
Sbjct: 175 DPVSLIAFDKIVMTAAAVKQVEEML 199


>gi|15892928|ref|NP_360642.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7]
 gi|34581370|ref|ZP_00142850.1| 50S ribosomal protein L4 [Rickettsia sibirica 246]
 gi|46577283|sp|Q92GW7|RL4_RICCN RecName: Full=50S ribosomal protein L4
 gi|15620120|gb|AAL03543.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7]
 gi|28262755|gb|EAA26259.1| 50S ribosomal protein L4 [Rickettsia sibirica 246]
          Length = 207

 Score =  178 bits (452), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G IS++EDIFA++  +  I+ +V+ WQ  +   G  K+K  SEV  T
Sbjct: 1   MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP        LPKKVR L L HALS+K   
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT  LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 121 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207


>gi|293372117|ref|ZP_06618508.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CMC
           3f]
 gi|292632909|gb|EFF51496.1| ribosomal protein L4/L1 family protein [Bacteroides ovatus SD CMC
           3f]
          Length = 208

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI   N+  + 
Sbjct: 121 DAIIVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGTNVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++++++A+++  
Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDNIL 207


>gi|119358190|ref|YP_912834.1| 50S ribosomal protein L4 [Chlorobium phaeobacteroides DSM 266]
 gi|166234653|sp|A1BJ33|RL4_CHLPD RecName: Full=50S ribosomal protein L4
 gi|119355539|gb|ABL66410.1| LSU ribosomal protein L4P [Chlorobium phaeobacteroides DSM 266]
          Length = 208

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N  G + G + +++E+IF ++  +  +   ++     KR G  K+K R++V   
Sbjct: 1   MELKVLNTSGTETGEVVTLNEEIFGVEVSEHAMYLDVKSILANKRQGTHKAKTRAQVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  S       GGG  FGP P      + KKV+ LA R ALS K  +
Sbjct: 61  GRKPYRQKGTGNARQGSTRSPLMIGGGTIFGPQPRSYDQKVNKKVKLLARRSALSAKAKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+VI++      KTK +    + L      +++   + D     + RNIP +N++   
Sbjct: 121 GKILVIEDFRLDAIKTKPVAEILKNLGLEQKKILMLTPEYDMIIARSGRNIPVLNIMTAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ YDIL  S ++  K+A+  +ED  
Sbjct: 181 KVSTYDILNSSAILFQKTALTKIEDTL 207


>gi|197287069|ref|YP_002152941.1| 50S ribosomal protein L4 [Proteus mirabilis HI4320]
 gi|227354933|ref|ZP_03839347.1| 50S ribosomal protein L4 [Proteus mirabilis ATCC 29906]
 gi|226730708|sp|B4F1I5|RL4_PROMH RecName: Full=50S ribosomal protein L4
 gi|194684556|emb|CAR46382.1| 50S ribosomal protein L4 [Proteus mirabilis HI4320]
 gi|227165015|gb|EEI49854.1| 50S ribosomal protein L4 [Proteus mirabilis ATCC 29906]
          Length = 201

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG +F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L +  +I   ++D N  LAARN+  +++     I
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDV-LIVTAEVDENLYLAARNLYKVDVRDAATI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|22297626|ref|NP_680873.1| 50S ribosomal protein L4 [Thermosynechococcus elongatus BP-1]
 gi|46577259|sp|Q8DMN0|RL4_THEEB RecName: Full=50S ribosomal protein L4
 gi|22293803|dbj|BAC07635.1| 50S ribosomal protein L4 [Thermosynechococcus elongatus BP-1]
          Length = 210

 Score =  178 bits (451), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   V++  G D G  ++       +    I+ R L  Q    R G   +K R+EV   
Sbjct: 1   MVACVVKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK LVT  +    +    +++    +     L+ARN+P + LL  
Sbjct: 121 LIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L   ++V +  AI  +++ +
Sbjct: 181 DQLNVFDLLYADRIVATTGAIAKIQEVY 208


>gi|212213249|ref|YP_002304185.1| 50S ribosomal protein L4 [Coxiella burnetii CbuG_Q212]
 gi|212218075|ref|YP_002304862.1| 50S ribosomal protein L4 [Coxiella burnetii CbuK_Q154]
 gi|215918922|ref|NP_819283.2| 50S ribosomal protein L4 [Coxiella burnetii RSA 493]
 gi|206583807|gb|AAO89797.2| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii RSA 493]
 gi|212011659|gb|ACJ19040.1| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii CbuG_Q212]
 gi|212012337|gb|ACJ19717.1| LSU ribosomal protein L1E (= L4P) [Coxiella burnetii CbuK_Q154]
          Length = 206

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+EL V + D ++   ++V++  F  + ++G++ +V+       R G    K R EV+  
Sbjct: 1   MMELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S     +R GG AF   P      + +K+   A+   LS+    
Sbjct: 61  GAKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRR 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D+L   E KT+ L    + L+L N LII     DRN  LA+RN+  +++     
Sbjct: 121 EQLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD-DRNINLASRNMVGVSVCDALH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++   ++    +V++  A++ LE+R 
Sbjct: 180 VDPVSLVAAENIVVTVDAVKRLEERL 205


>gi|123444097|ref|YP_001008067.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163258|ref|YP_004299835.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|166199925|sp|A1JS46|RL4_YERE8 RecName: Full=50S ribosomal protein L4
 gi|122091058|emb|CAL13941.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|325667488|gb|ADZ44132.1| 50S ribosomal protein L4 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861854|emb|CBX72025.1| 50S ribosomal protein L4 [Yersinia enterocolitica W22703]
          Length = 201

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELIVKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|323492120|ref|ZP_08097282.1| 50S ribosomal protein L4 [Vibrio brasiliensis LMG 20546]
 gi|323313681|gb|EGA66783.1| 50S ribosomal protein L4 [Vibrio brasiliensis LMG 20546]
          Length = 200

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVMTADAVKQVEEML 199


>gi|294638051|ref|ZP_06716311.1| ribosomal protein L4/L1 family protein [Edwardsiella tarda ATCC
           23685]
 gi|291088843|gb|EFE21404.1| ribosomal protein L4/L1 family protein [Edwardsiella tarda ATCC
           23685]
          Length = 201

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG +F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVSFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKEMALDDV-LIVTSEVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|237806876|ref|YP_002891316.1| 50S ribosomal protein L4 [Tolumonas auensis DSM 9187]
 gi|259491579|sp|C4L7T1|RL4_TOLAT RecName: Full=50S ribosomal protein L4
 gi|237499137|gb|ACQ91730.1| ribosomal protein L4/L1e [Tolumonas auensis DSM 9187]
          Length = 201

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELVLKDAQ----SALQVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F   P      + +K+   A++  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGTIRSPIWRGGGVTFAAKPQDHSQKVNRKMYRGAIQSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK L+T+ +ALDL +  +I   +++ N  LAARN+  +++  V GI
Sbjct: 117 RLVVVEKFGVDAPKTKELLTKLQALDLKDV-LIVTPEVEENLFLAARNLYKVDVRDVTGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVLMTADAVKQIEEML 200


>gi|119947125|ref|YP_944805.1| 50S ribosomal protein L4 [Psychromonas ingrahamii 37]
 gi|166199850|sp|A1T0E1|RL4_PSYIN RecName: Full=50S ribosomal protein L4
 gi|119865729|gb|ABM05206.1| LSU ribosomal protein L4P [Psychromonas ingrahamii 37]
          Length = 201

 Score =  178 bits (451), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F  +  + ++ +V+   +   R G    K RS+V+  G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     + GGG  F   P      + KK+   A++  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGTIRSPIWVGGGVTFAARPQDHSQKVNKKMYRGAVKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KT+ L  + + LDL +  +I   +LD N  LAARN+  +++  VQGI
Sbjct: 117 RLIVVEKFSVEAPKTQELKAKLKELDLKDV-LIITEELDENLFLAARNLYKVDVRDVQGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ +E+  
Sbjct: 176 DPVSLIAFDKVLVTAAAVKKIEESL 200


>gi|282857361|ref|ZP_06266598.1| ribosomal protein, L4/L1 family [Pyramidobacter piscolens W5455]
 gi|282584861|gb|EFB90192.1| ribosomal protein, L4/L1 family [Pyramidobacter piscolens W5455]
          Length = 207

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N+ GE  G  ++S+++F        + +V+  Q    R G + +K R EV   
Sbjct: 1   MPVIKIMNISGEVVGEKTLSDEVFGASVHVSAMHQVVVAQLAHARQGTASTKMRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     + GGG   GP P      + KKVR+LA+R ALS +   
Sbjct: 61  GKKPWKQKHTGRARAGSSRSPLWVGGGVVHGPKPRSYDLKVNKKVRALAMRSALSMRVIE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  ++N   +   TK +     +L  +  ++    Q D N   +A NIP   +L V  
Sbjct: 121 QSLCAVENFGFEAPSTKKMKGFIDSLK-AKKILFLLDQRDENVVRSASNIPGAKVLHVDS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INV D++    +V + + +E LE+ +
Sbjct: 180 INVLDLVHHDHVVATPAVLEKLEEVY 205


>gi|298207728|ref|YP_003715907.1| 50S ribosomal protein L4 [Croceibacter atlanticus HTCC2559]
 gi|83850365|gb|EAP88233.1| 50S ribosomal protein L4 [Croceibacter atlanticus HTCC2559]
          Length = 208

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V ++ G++ G  +++S+ +F ++P +  +   ++     KR G  K+K R+E+A +
Sbjct: 1   MEIAVLDIKGKEIGRKVTLSDAVFGIEPNEHAVYLDVKQHLANKRQGTHKAKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L KK + LA R ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYSFKLNKKQKQLARRSALSQKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I++++N      KTK  +         +N  +I     ++N  L++RN    N++ V 
Sbjct: 121 NAIVIVENFSFDAPKTKNYIDFLTNLGIENNKSLIVLGDTNKNVYLSSRNFKGSNVVTVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y I+    LVL + ++E +E   
Sbjct: 181 ELNTYKIMNSQSLVLLEGSLEEIESNL 207


>gi|330815250|ref|YP_004358955.1| 50S ribosomal protein L4 [Burkholderia gladioli BSR3]
 gi|327367643|gb|AEA58999.1| 50S ribosomal protein L4 [Burkholderia gladioli BSR3]
          Length = 206

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++   ++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNENGQEGASVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    LR   S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLRSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++ L  +  KTK L  +F+A+    ++++    +D N  LA+RN+PN+ ++  + 
Sbjct: 121 GRLSVVEQLTLEAPKTKLLAEKFKAMG-LESVLVITDTVDENLYLASRNLPNVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKILVTKAAVAQIEELL 205


>gi|148263141|ref|YP_001229847.1| 50S ribosomal protein L4 [Geobacter uraniireducens Rf4]
 gi|189029505|sp|A5GAW6|RL4_GEOUR RecName: Full=50S ribosomal protein L4
 gi|146396641|gb|ABQ25274.1| LSU ribosomal protein L4P [Geobacter uraniireducens Rf4]
          Length = 207

 Score =  177 bits (450), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 114/207 (55%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L V ++  +  G I +S+ +F  + ++ ++   ++ Q   +R G    K RS VA +
Sbjct: 1   MAKLDVFDIKNKKVGEIELSDSVFNDEVKEYLIHEAVKIQLANRRAGTVGVKNRSAVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG+AR   +   Q+ GGG AFGP       ++ KK R  A+R ALS  F +
Sbjct: 61  GKKPFKQKGTGQARQGCRRAPQYPGGGVAFGPQAKTYNLSMNKKARRAAMRSALSLLFKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V++N+      TK  V       L   L++   + +RN +L+ARN+ N+ +L  +G
Sbjct: 121 NKLTVLNNIDLDNVSTKNFVGILNGFTLDKTLVVTDVE-NRNLELSARNVKNVKVLKSEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +N++DI++   ++ +++++  +E   +
Sbjct: 180 LNIFDIMKYQSVIFTENSVRKVEGALQ 206


>gi|103488294|ref|YP_617855.1| 50S ribosomal protein L4 [Sphingopyxis alaskensis RB2256]
 gi|123252916|sp|Q1GPA0|RL4_SPHAL RecName: Full=50S ribosomal protein L4
 gi|98978371|gb|ABF54522.1| LSU ribosomal protein L4P [Sphingopyxis alaskensis RB2256]
          Length = 208

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/205 (40%), Positives = 121/205 (59%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V+ LDG+    I +++D+F L  +  IL RV+ WQ  ++R     ++ RS+VA TG
Sbjct: 1   MKIKVQTLDGKAGADIDLNDDVFGLDARADILHRVVAWQLEKRRGPARAARERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG G ARH  +    F GGGKA GP      H+L KK+R+L L+ ALSDK    
Sbjct: 61  KKFGRQKGGGTARHGDRRAPIFIGGGKAHGPRARTFGHSLNKKIRTLGLKMALSDKAKGG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++VID L  K+ KTK L  +  +      AL IDG  +  +F +A+ N+  ++ LP  G
Sbjct: 121 KLVVIDTLELKDAKTKALAGKLGKLDLGKRALFIDGDAVHESFAMASANLIGVDALPAIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
            NVYDI+R   LVL+++A+E LE R
Sbjct: 181 ANVYDIVRADTLVLTRAAVEKLEAR 205


>gi|109896799|ref|YP_660054.1| 50S ribosomal protein L4 [Pseudoalteromonas atlantica T6c]
 gi|122972346|sp|Q15YN8|RL4_PSEA6 RecName: Full=50S ribosomal protein L4
 gi|109699080|gb|ABG39000.1| LSU ribosomal protein L4P [Pseudoalteromonas atlantica T6c]
 gi|332172250|gb|AEE21504.1| ribosomal protein L4/L1e [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 201

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F  +  + ++ +V+       R G    K RSEV   G
Sbjct: 1   MELVLKDAQ----SALEVSEATFGREFNEALVHQVVVAFGAGARQGSKAQKTRSEVRGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 57  AKPWRQKGTGRARAGTIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIQSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L+++   L+LS+  +I   ++D N  LAARN+  +++  VQGI
Sbjct: 117 RLIVVEKFSVEAPKTKELLSKLNGLELSDV-LIVTSEVDENLFLAARNLYKVDVRDVQGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ALE+  
Sbjct: 176 DPVSLIAFEKVLITADAVKALEEAL 200


>gi|227487122|ref|ZP_03917438.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092780|gb|EEI28092.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 226

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 2/205 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L V   DG+  G + +  ++F  K    +L +V+  Q    R G   +K R EV+  G K
Sbjct: 6   LDVHTADGKTDGTVELPAELFDRKVSVALLHQVVNAQLAGARQGTHSTKTRGEVSGGGKK 65

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRAR  S     F GGG A GP P       PKK+++ AL  ALS++  +  I
Sbjct: 66  PFRQKGTGRARQGSIRAPHFTGGGIAHGPKPRDYSQRTPKKMKAAALLGALSNRARTGRI 125

Query: 124 M-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
             + + +  ++  TK   T   ++     +++   + D+  +L+ RN+P +     + I 
Sbjct: 126 HAITEVVAGQKPSTKAARTFLESITDRKNVLVVVGREDQTSRLSVRNLPGVRFCGPEQIT 185

Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207
            +D+L+   ++ S  ++    +  K
Sbjct: 186 TFDVLKADDVIFSVESLHKFIE-LK 209


>gi|242237860|ref|YP_002986041.1| 50S ribosomal protein L4 [Dickeya dadantii Ech703]
 gi|251787972|ref|YP_003002693.1| 50S ribosomal protein L4 [Dickeya zeae Ech1591]
 gi|271502245|ref|YP_003335271.1| 50S ribosomal protein L4/L1e [Dickeya dadantii Ech586]
 gi|242129917|gb|ACS84219.1| ribosomal protein L4/L1e [Dickeya dadantii Ech703]
 gi|247536593|gb|ACT05214.1| ribosomal protein L4/L1e [Dickeya zeae Ech1591]
 gi|270345800|gb|ACZ78565.1| ribosomal protein L4/L1e [Dickeya dadantii Ech586]
          Length = 201

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + L L + LII G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKELALDDVLIITG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|212695304|ref|ZP_03303432.1| hypothetical protein BACDOR_04844 [Bacteroides dorei DSM 17855]
 gi|237711674|ref|ZP_04542155.1| 50S ribosomal protein L4 [Bacteroides sp. 9_1_42FAA]
 gi|237725884|ref|ZP_04556365.1| 50S ribosomal protein L4 [Bacteroides sp. D4]
 gi|265753094|ref|ZP_06088663.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 3_1_33FAA]
 gi|212662214|gb|EEB22788.1| hypothetical protein BACDOR_04844 [Bacteroides dorei DSM 17855]
 gi|229435692|gb|EEO45769.1| 50S ribosomal protein L4 [Bacteroides dorei 5_1_36/D4]
 gi|229454369|gb|EEO60090.1| 50S ribosomal protein L4 [Bacteroides sp. 9_1_42FAA]
 gi|263236280|gb|EEZ21775.1| 50S ribosomal protein L4/L1 [Bacteroides sp. 3_1_33FAA]
          Length = 208

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 115/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVLNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKTLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+++++   +  KTK  V+    L +++   ++   + ++N  L+ARNI   N+    
Sbjct: 121 NAIIIVEDFTFEAPKTKDFVSMVNNLKITDKKLLLVLPEANKNVYLSARNIERANVAIAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y++L    LV+++++++A+E+  
Sbjct: 181 ALNTYNVLNAETLVVTENSLKAIENIL 207


>gi|160888398|ref|ZP_02069401.1| hypothetical protein BACUNI_00811 [Bacteroides uniformis ATCC 8492]
 gi|317477750|ref|ZP_07936943.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 4_1_36]
 gi|156862075|gb|EDO55506.1| hypothetical protein BACUNI_00811 [Bacteroides uniformis ATCC 8492]
 gi|316906095|gb|EFV27856.1| ribosomal protein L4/L1 family protein [Bacteroides sp. 4_1_36]
          Length = 208

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  I+++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++V+++   +  KTK  V   +        L++   + ++N  L+ARN+   N+  + 
Sbjct: 121 NAVVVVEDFSFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +V ++SA+ A+++  
Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDNIL 207


>gi|270264372|ref|ZP_06192638.1| 50S ribosomal protein L4 [Serratia odorifera 4Rx13]
 gi|270041508|gb|EFA14606.1| 50S ribosomal protein L4 [Serratia odorifera 4Rx13]
          Length = 201

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LI+ G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|260770914|ref|ZP_05879843.1| LSU ribosomal protein L4p (L1e) [Vibrio furnissii CIP 102972]
 gi|260614151|gb|EEX39341.1| LSU ribosomal protein L4p (L1e) [Vibrio furnissii CIP 102972]
 gi|315178960|gb|ADT85874.1| 50S ribosomal protein L4 [Vibrio furnissii NCTC 11218]
          Length = 200

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V     +    ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMV-----KGANALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + L+L++ LI+ G ++D N  LAARN+  +++  V GI
Sbjct: 116 RLIVVEEFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVSGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ +E+  
Sbjct: 175 DPVSLIAFDKVLMTAAAVKQVEEML 199


>gi|300718704|ref|YP_003743507.1| 50S ribosomal protein L4 [Erwinia billingiae Eb661]
 gi|299064540|emb|CAX61660.1| 50S ribosomal protein L4 [Erwinia billingiae Eb661]
          Length = 201

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L + LII G +L+ N  LAARN+  +++    GI
Sbjct: 117 RLIVVEQFSLEAPKTKLLVEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|163804108|ref|ZP_02197892.1| 50S ribosomal protein L4 [Vibrio sp. AND4]
 gi|269959692|ref|ZP_06174072.1| 50S ribosomal protein L4 [Vibrio harveyi 1DA3]
 gi|323495505|ref|ZP_08100579.1| 50S ribosomal protein L4 [Vibrio sinaloensis DSM 21326]
 gi|159172078|gb|EDP57033.1| 50S ribosomal protein L4 [Vibrio sp. AND4]
 gi|269835615|gb|EEZ89694.1| 50S ribosomal protein L4 [Vibrio harveyi 1DA3]
 gi|323319386|gb|EGA72323.1| 50S ribosomal protein L4 [Vibrio sinaloensis DSM 21326]
          Length = 200

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEEML 199


>gi|323344637|ref|ZP_08084861.1| 50S ribosomal protein L4 [Prevotella oralis ATCC 33269]
 gi|323093907|gb|EFZ36484.1| 50S ribosomal protein L4 [Prevotella oralis ATCC 33269]
          Length = 209

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N++G++ G  ++++E IF ++P   ++   ++     +R G +KSK RSE   +
Sbjct: 1   MEVSVLNINGQETGRKVTLNESIFGIEPNDHVIYLDVKQYLANQRQGTAKSKERSEHRGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYGFKLNKKVKALARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   + L +     ++   ++++N  L+ARN+    ++   
Sbjct: 121 NAIVVVEDFNMEAPKTKDFVNIAKNLKVEGLKTLLLLPEVNKNVYLSARNLQKAEVMIAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV+++ +++ ++D  
Sbjct: 181 TLNTYKVLNADVLVVTEKSLKTIDDIL 207


>gi|227541711|ref|ZP_03971760.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182526|gb|EEI63498.1| 50S ribosomal protein L4 [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 226

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 2/205 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L V   DG+  G + +  ++F  K    +L +V+  Q    R G   +K R EV+  G K
Sbjct: 6   LDVHTADGKTDGTVELPAELFDRKVSVALLHQVVNAQLAGARQGTHSTKTRGEVSGGGKK 65

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRAR  S     F GGG A GP P       PKK+++ AL  ALS++  +  I
Sbjct: 66  PFRQKGTGRARQGSIRAPHFTGGGIAHGPKPRDYSQRTPKKMKAAALLGALSNRARTGRI 125

Query: 124 M-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
             + + +  +   TK   T   ++     +++   + D+  +L+ RN+P +     + I 
Sbjct: 126 HAITEVVAGQNPSTKAARTFLESITDRKNVLVVVGREDQTSRLSVRNLPGVRFCGPEQIT 185

Query: 183 VYDILRCSKLVLSKSAIEALEDRFK 207
            +D+L+   ++ S  ++    +  K
Sbjct: 186 TFDVLKADDVIFSVESLHKFIE-LK 209


>gi|320540608|ref|ZP_08040258.1| putative 50S ribosomal subunit protein L4 [Serratia symbiotica str.
           Tucson]
 gi|320029539|gb|EFW11568.1| putative 50S ribosomal subunit protein L4 [Serratia symbiotica str.
           Tucson]
          Length = 201

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LI+ G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKEMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|218131326|ref|ZP_03460130.1| hypothetical protein BACEGG_02937 [Bacteroides eggerthii DSM 20697]
 gi|317476355|ref|ZP_07935604.1| ribosomal protein L4/L1 family protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986258|gb|EEC52595.1| hypothetical protein BACEGG_02937 [Bacteroides eggerthii DSM 20697]
 gi|316907381|gb|EFV29086.1| ribosomal protein L4/L1 family protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 208

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  I+++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYFFKLNKKVKALARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   +        L++   + ++N  L+ARN+   N+  V 
Sbjct: 121 NGIIVVEDFNFEAPKTKDFVVMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +V ++SA+ A+++  
Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDNIL 207


>gi|238650971|ref|YP_002916827.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic]
 gi|259491568|sp|C4K2H8|RL4_RICPU RecName: Full=50S ribosomal protein L4
 gi|238625069|gb|ACR47775.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic]
          Length = 207

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G IS++EDIFA++  +  I+ +V+ WQ  +   G  K+K  SEV  T
Sbjct: 1   MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP        LPKKVR L L HALS+K   
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT  LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 121 GKLLVIDSLKLDKPKTSVLVNILNKFQGKSFFVIDGNEVDINFSLAAKNIYNTVIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207


>gi|22127861|ref|NP_671284.1| 50S ribosomal protein L4 [Yersinia pestis KIM 10]
 gi|45440068|ref|NP_991607.1| 50S ribosomal protein L4 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108809253|ref|YP_653169.1| 50S ribosomal protein L4 [Yersinia pestis Antiqua]
 gi|108814018|ref|YP_649785.1| 50S ribosomal protein L4 [Yersinia pestis Nepal516]
 gi|145597453|ref|YP_001161528.1| 50S ribosomal protein L4 [Yersinia pestis Pestoides F]
 gi|150260742|ref|ZP_01917470.1| 50S ribosomal protein L4 [Yersinia pestis CA88-4125]
 gi|153948290|ref|YP_001402862.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 31758]
 gi|161760556|ref|YP_072178.2| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 32953]
 gi|162418449|ref|YP_001605176.1| 50S ribosomal protein L4 [Yersinia pestis Angola]
 gi|165927876|ref|ZP_02223708.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|166010562|ref|ZP_02231460.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213330|ref|ZP_02239365.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398762|ref|ZP_02304286.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418684|ref|ZP_02310437.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425739|ref|ZP_02317492.1| ribosomal protein L4 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170022545|ref|YP_001719050.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis YPIII]
 gi|186897183|ref|YP_001874295.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis PB1/+]
 gi|218927416|ref|YP_002345291.1| 50S ribosomal protein L4 [Yersinia pestis CO92]
 gi|229836308|ref|ZP_04456475.1| 50S ribosomal subunit protein L4 [Yersinia pestis Pestoides A]
 gi|229840068|ref|ZP_04460227.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842150|ref|ZP_04462305.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904550|ref|ZP_04519661.1| 50S ribosomal subunit protein L4 [Yersinia pestis Nepal516]
 gi|270488234|ref|ZP_06205308.1| ribosomal protein L4/L1 family protein [Yersinia pestis KIM D27]
 gi|294502290|ref|YP_003566352.1| 50S ribosomal protein L4 [Yersinia pestis Z176003]
 gi|46397669|sp|P60730|RL4_YERPE RecName: Full=50S ribosomal protein L4
 gi|46397670|sp|P60731|RL4_YERPS RecName: Full=50S ribosomal protein L4
 gi|122382705|sp|Q1C2U8|RL4_YERPA RecName: Full=50S ribosomal protein L4
 gi|122384011|sp|Q1CCU5|RL4_YERPN RecName: Full=50S ribosomal protein L4
 gi|166199926|sp|A4TGZ3|RL4_YERPP RecName: Full=50S ribosomal protein L4
 gi|166990955|sp|A7FNN4|RL4_YERP3 RecName: Full=50S ribosomal protein L4
 gi|226731449|sp|B2K5M9|RL4_YERPB RecName: Full=50S ribosomal protein L4
 gi|226731450|sp|A9R8Z7|RL4_YERPG RecName: Full=50S ribosomal protein L4
 gi|226731451|sp|B1JIW2|RL4_YERPY RecName: Full=50S ribosomal protein L4
 gi|21960996|gb|AAM87535.1|AE014002_8 50S ribosomal subunit protein L4 [Yersinia pestis KIM 10]
 gi|48646|emb|CAA32543.1| ribosomal protein L4 (AA 1 - 201) [Yersinia pseudotuberculosis]
 gi|45434923|gb|AAS60484.1| 50S ribosomal protein L4 [Yersinia pestis biovar Microtus str.
           91001]
 gi|108777666|gb|ABG20185.1| LSU ribosomal protein L4P [Yersinia pestis Nepal516]
 gi|108781166|gb|ABG15224.1| LSU ribosomal protein L4P [Yersinia pestis Antiqua]
 gi|115346027|emb|CAL18893.1| 50S ribosomal protein L4 [Yersinia pestis CO92]
 gi|145209149|gb|ABP38556.1| LSU ribosomal protein L4P [Yersinia pestis Pestoides F]
 gi|149290150|gb|EDM40227.1| 50S ribosomal protein L4 [Yersinia pestis CA88-4125]
 gi|152959785|gb|ABS47246.1| ribosomal protein L4 [Yersinia pseudotuberculosis IP 31758]
 gi|162351264|gb|ABX85212.1| ribosomal protein L4 [Yersinia pestis Angola]
 gi|165920152|gb|EDR37453.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990652|gb|EDR42953.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205628|gb|EDR50108.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962678|gb|EDR58699.1| ribosomal protein L4 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051266|gb|EDR62674.1| ribosomal protein L4 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055429|gb|EDR65223.1| ribosomal protein L4 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749079|gb|ACA66597.1| ribosomal protein L4/L1e [Yersinia pseudotuberculosis YPIII]
 gi|186700209|gb|ACC90838.1| ribosomal protein L4/L1e [Yersinia pseudotuberculosis PB1/+]
 gi|229678668|gb|EEO74773.1| 50S ribosomal subunit protein L4 [Yersinia pestis Nepal516]
 gi|229690460|gb|EEO82514.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696434|gb|EEO86481.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706376|gb|EEO92383.1| 50S ribosomal subunit protein L4 [Yersinia pestis Pestoides A]
 gi|262360370|gb|ACY57091.1| 50S ribosomal protein L4 [Yersinia pestis D106004]
 gi|262364322|gb|ACY60879.1| 50S ribosomal protein L4 [Yersinia pestis D182038]
 gi|270336738|gb|EFA47515.1| ribosomal protein L4/L1 family protein [Yersinia pestis KIM D27]
 gi|294352749|gb|ADE63090.1| 50S ribosomal protein L4 [Yersinia pestis Z176003]
 gi|320013343|gb|ADV96914.1| 50S ribosomal subunit protein L4 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 201

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVMKDAPGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK L  + + + L + LI+ G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|152978142|ref|YP_001343771.1| 50S ribosomal protein L4 [Actinobacillus succinogenes 130Z]
 gi|171704188|sp|A6VLI9|RL4_ACTSZ RecName: Full=50S ribosomal protein L4
 gi|150839865|gb|ABR73836.1| ribosomal protein L4/L1e [Actinobacillus succinogenes 130Z]
          Length = 201

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANNA----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK L  + + + L++A +I    LD N  LAARN+  +++  VQGI
Sbjct: 117 RLVVVEKFEIDAPKTKVLAQKLKDMALNDA-LIITASLDENLFLAARNLYKVDVRDVQGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVVTVDAVKQIEEML 200


>gi|150003386|ref|YP_001298130.1| 50S ribosomal protein L4 [Bacteroides vulgatus ATCC 8482]
 gi|254881323|ref|ZP_05254033.1| 50S ribosomal protein L4 [Bacteroides sp. 4_3_47FAA]
 gi|294777822|ref|ZP_06743266.1| ribosomal protein L4/L1 family protein [Bacteroides vulgatus PC510]
 gi|319640325|ref|ZP_07995050.1| 50S ribosomal protein L4 [Bacteroides sp. 3_1_40A]
 gi|166234635|sp|A6KYJ4|RL4_BACV8 RecName: Full=50S ribosomal protein L4
 gi|149931810|gb|ABR38508.1| 50S ribosomal protein L4 [Bacteroides vulgatus ATCC 8482]
 gi|254834116|gb|EET14425.1| 50S ribosomal protein L4 [Bacteroides sp. 4_3_47FAA]
 gi|294448276|gb|EFG16832.1| ribosomal protein L4/L1 family protein [Bacteroides vulgatus PC510]
 gi|317388100|gb|EFV68954.1| 50S ribosomal protein L4 [Bacteroides sp. 3_1_40A]
          Length = 208

 Score =  177 bits (450), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVLNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKTLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+++++   +  KTK  V+    L +    L++   + ++N  L+ARNI   N+    
Sbjct: 121 NAIIIVEDFTFEAPKTKDFVSMVNNLKIADKKLLLVLPEANKNVYLSARNIERANVAIAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y++L    LV+++++++A+E+  
Sbjct: 181 ALNTYNVLNAETLVVTENSLKAIENIL 207


>gi|313673466|ref|YP_004051577.1| ribosomal protein l4/l1e [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940222|gb|ADR19414.1| ribosomal protein L4/L1e [Calditerrivibrio nitroreducens DSM 19672]
          Length = 207

 Score =  177 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 106/206 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V N   E  G + +S++I     +  ++  V++ Q   +R G   +  R+ +   
Sbjct: 1   MALVDVLNTKNEKVGQVEISDNIMTYPVKPWLIHEVVKMQLACRRAGTHATLNRALIEGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P    +++PKK    ALR A+  KF  
Sbjct: 61  GRKPWKQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYSYSMPKKKVKNALRSAVKAKFDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + ++DN V +  KTK       A+ LS  ++I   ++D    +A RN+P ++ L V+G
Sbjct: 121 AAVKIVDNFVVESGKTKDAQKLLDAMGLSKRVLIVYSEIDDKTFMAFRNLPKVDFLNVKG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD++    +++ K A+  + +  
Sbjct: 181 LNVYDVVNADNIIIVKDALSYIMEVL 206


>gi|118579120|ref|YP_900370.1| 50S ribosomal protein L4 [Pelobacter propionicus DSM 2379]
 gi|166199839|sp|A1ALU2|RL4_PELPD RecName: Full=50S ribosomal protein L4
 gi|118501830|gb|ABK98312.1| LSU ribosomal protein L4P [Pelobacter propionicus DSM 2379]
          Length = 207

 Score =  177 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N++ +  G + +++D+F    ++ ++   LR Q   +R G  K+K RSEVA +
Sbjct: 1   MPSIAVYNMNRQQVGELQLADDVFNADVKEHLMHLALRIQLANRRAGTVKTKTRSEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR       Q+ GGG AFGP P     ++ KK R  A+  ALS +  +
Sbjct: 61  GKKPFKQKGTGNARQGCVRAPQYPGGGVAFGPQPKEYHLSMNKKARKSAICSALSLQCKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N I V+D L      TK  V   +  +     +I       N QL+ RN+P++ LL    
Sbjct: 121 NRITVMDKLDFSSISTKAFVDFMKRFE-IERSLIITDDFSNNLQLSCRNVPHVKLLKHDA 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N++DIL+   ++ ++ A++++E   
Sbjct: 180 LNIHDILKYKNIIFTQGAVQSVEGVL 205


>gi|292489848|ref|YP_003532738.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora CFBP1430]
 gi|292900890|ref|YP_003540259.1| 50S ribosomal protein L4 [Erwinia amylovora ATCC 49946]
 gi|291200738|emb|CBJ47871.1| 50S ribosomal subunit protein L4 [Erwinia amylovora ATCC 49946]
 gi|291555285|emb|CBA23587.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora CFBP1430]
 gi|312174030|emb|CBX82283.1| 50S ribosomal protein L4 (BL4) [Erwinia amylovora ATCC BAA-2158]
          Length = 201

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L + LII G +L  N  LAARN+  +++    GI
Sbjct: 117 RLIVVEQFSLEAPKTKLLVEKLKDMALEDVLIITG-ELQENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|238921441|ref|YP_002934956.1| 50S ribosomal protein L4 [Edwardsiella ictaluri 93-146]
 gi|269140569|ref|YP_003297270.1| 50S ribosomal protein L4 [Edwardsiella tarda EIB202]
 gi|259491556|sp|C5BGM4|RL4_EDWI9 RecName: Full=50S ribosomal protein L4
 gi|238871010|gb|ACR70721.1| 50S ribosomal protein L4 [Edwardsiella ictaluri 93-146]
 gi|267986230|gb|ACY86059.1| 50S ribosomal protein L4 [Edwardsiella tarda EIB202]
 gi|304560358|gb|ADM43022.1| LSU ribosomal protein L4p (L1e) [Edwardsiella tarda FL6-60]
          Length = 201

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALDDV-LIVTSEVDENLFLAARNLFKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|157964805|ref|YP_001499629.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5]
 gi|157844581|gb|ABV85082.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5]
          Length = 209

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 84/207 (40%), Positives = 120/207 (57%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  V +L  ++ G IS++E+IFA++  +  I+ +V+ WQ  +   G  K+K  SEV  T
Sbjct: 3   MKTKVLSLANKEVGEISLNENIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGT 62

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP        LPKKVR L L HALS+K   
Sbjct: 63  TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAE 122

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT  LV         +  +IDG ++D NF LAA+NI N  ++P  G
Sbjct: 123 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFCVIDGNEVDINFSLAAKNIYNTVIVPQIG 182

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 183 ANVYDIIRHEYVLLSQEAVSVLEERLR 209


>gi|59710844|ref|YP_203620.1| 50S ribosomal protein L4 [Vibrio fischeri ES114]
 gi|197334113|ref|YP_002154997.1| ribosomal protein, L4/L1 family [Vibrio fischeri MJ11]
 gi|75431860|sp|Q5E8B4|RL4_VIBF1 RecName: Full=50S ribosomal protein L4
 gi|226731442|sp|B5FG10|RL4_VIBFM RecName: Full=50S ribosomal protein L4
 gi|59478945|gb|AAW84732.1| 50S ribosomal subunit protein L4 [Vibrio fischeri ES114]
 gi|197315603|gb|ACH65050.1| ribosomal protein, L4/L1 family [Vibrio fischeri MJ11]
          Length = 200

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 111/205 (54%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++ LI+ G ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ +E+  
Sbjct: 175 DPVSLVAFDKVLMTAAAVKQVEEML 199


>gi|261338278|ref|ZP_05966162.1| ribosomal protein L4/L1 family protein [Bifidobacterium gallicum
           DSM 20093]
 gi|270276933|gb|EFA22787.1| ribosomal protein L4/L1 family protein [Bifidobacterium gallicum
           DSM 20093]
          Length = 220

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 6/208 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA---LKPQQG--ILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V +  G   G I    ++F     +      ++ +V+  Q   +R G   +K R  
Sbjct: 4   VTLNVTDNQGNATGTIEAPAEVFGFTAEEVHAHVPLIHQVVNAQLAARRQGTHATKTRGM 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG  FGP P       PKK+++ ALR+ LSD
Sbjct: 64  VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGTVFGPQPRDYSQRTPKKMKAAALRYVLSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  + V+D     E  TK  +     +  +    +   + + N  L+ RNIP ++ +
Sbjct: 124 RANNGRVAVVD-FGITEPSTKKALAALNPITENKFTTVVLSRDNINEWLSVRNIPTVHPI 182

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALED 204
               +N YD++    +V SK   EA  +
Sbjct: 183 FADQLNTYDVVTAQYVVFSKEGYEAFLE 210


>gi|160872138|ref|ZP_02062270.1| ribosomal protein L4/L1 family [Rickettsiella grylli]
 gi|159120937|gb|EDP46275.1| ribosomal protein L4/L1 family [Rickettsiella grylli]
          Length = 205

 Score =  177 bits (449), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 105/205 (51%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++++    G     + +SE +F  +  + ++ +V+       R G    K RS V   G
Sbjct: 1   MQVALLTKSG-VNQELQLSETVFGCRFNEPLVHQVVTAYLAGGRQGSRAQKNRSAVRGGG 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKG GRAR  +     +RGGG  F          + KK+   A+R   S+    N
Sbjct: 60  RKPWKQKGMGRARAGTIRSPLWRGGGVTFAASKQDFTQKINKKMYRFAIRSICSELLRQN 119

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
             +V+++   ++ KT+ LV   ++L++S  ++I   +++    LAARN+P++ L  V+ I
Sbjct: 120 RFVVLESFEIEKPKTRDLVALLQSLNISQKILIVLEEVNEVTYLAARNLPHVELTDVEAI 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N   ++ C K++++ +A++ +E+  
Sbjct: 180 NPVGLIDCQKVLITATALKQIEELL 204


>gi|239948318|ref|ZP_04700071.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|241563414|ref|XP_002401694.1| ribosomal protein L4, putative [Ixodes scapularis]
 gi|215501886|gb|EEC11380.1| ribosomal protein L4, putative [Ixodes scapularis]
 gi|239922594|gb|EER22618.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 207

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 85/207 (41%), Positives = 121/207 (58%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G IS++EDIFA++  +  I+ +V+ WQ  +   G  K+K  SEV+ T
Sbjct: 1   MKTKILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG A GP        LPKKVR L L HALS+KF  
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++VID+L   + KT  LV         +  +ID  ++D NF LAA+NI N  ++P  G
Sbjct: 121 GKLLVIDSLKLDKPKTSALVNILNKFQGKSFFVIDRNEVDINFSLAAKNIYNTVIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVSVLEERLR 207


>gi|197294630|ref|YP_001799171.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense]
 gi|226730703|sp|B1VAE7|RL4_PHYAS RecName: Full=50S ribosomal protein L4
 gi|171853957|emb|CAM11920.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense]
          Length = 207

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 106/207 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M + +V N  G+      +  ++F ++P Q  L  V+  Q    R G   +K R+ V+  
Sbjct: 1   MPKYNVINQLGDLISTKDLKSNVFDIQPHQQALYDVINAQRAAMRQGTHATKTRAFVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRARH S     +RGGG  FGP P      + +KV  LAL+ ALS  F  
Sbjct: 61  GKKPWRQKGTGRARHGSIRSPLWRGGGVVFGPSPRNYSVKVNQKVSHLALKSALSSHFRQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++++D+      K+K      + L++++  +I     +RN  LA+RN+P + L     
Sbjct: 121 NQLILVDDFNLDTHKSKDFQKTLQKLNVTSKALIIVTNSNRNLTLASRNLPYVTLETAAH 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +VY IL C  L+L+  A+   E+  K
Sbjct: 181 ASVYQILNCKNLILTLDAVAYFEEVLK 207


>gi|293393310|ref|ZP_06637624.1| 50S ribosomal protein L4 [Serratia odorifera DSM 4582]
 gi|291424220|gb|EFE97435.1| 50S ribosomal protein L4 [Serratia odorifera DSM 4582]
          Length = 201

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LI+ G ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|256819983|ref|YP_003141262.1| 50S ribosomal protein L4 [Capnocytophaga ochracea DSM 7271]
 gi|256581566|gb|ACU92701.1| ribosomal protein L4/L1e [Capnocytophaga ochracea DSM 7271]
          Length = 209

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ G++ G  +++S+ +F ++P   ++   ++     KR G  K+K R+EVA +
Sbjct: 1   MEVAVLNIQGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG+ FGP P      L K V+ LA R ALS K  +
Sbjct: 61  TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             ++V+++L     KTK      ++L   +   +      + N  L++RN+P  +++   
Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSLFVLPNTNNNVYLSSRNVPTSSVVTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y ++  S +VL++S++  LE   
Sbjct: 181 ELNTYQLVNASNVVLTESSVAVLESIL 207


>gi|50122950|ref|YP_052117.1| 50S ribosomal protein L4 [Pectobacterium atrosepticum SCRI1043]
 gi|81643768|sp|Q6CZX1|RL4_ERWCT RecName: Full=50S ribosomal protein L4
 gi|49613476|emb|CAG76927.1| 50S ribosomal subunit protein L4 [Pectobacterium atrosepticum
           SCRI1043]
          Length = 201

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L + LII G +LD N  LAARN+  +++     I
Sbjct: 117 RLIVVEQFSLEAPKTKLLVEKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|16329940|ref|NP_440668.1| 50S ribosomal protein L4 [Synechocystis sp. PCC 6803]
 gi|2500235|sp|P73319|RL4_SYNY3 RecName: Full=50S ribosomal protein L4
 gi|1652426|dbj|BAA17348.1| 50S ribosomal protein L4 [Synechocystis sp. PCC 6803]
          Length = 210

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++  V+N  GE+ G  S++  +   +    I+ R L  Q    R G + +K R+EV   
Sbjct: 1   MVDCIVKNWQGEEVGNASLTLRVAKEENAAHIVHRALVRQQNNARQGNASAKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A++ +  +
Sbjct: 61  GRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTAIASRADN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++        + KTK L T            +++   ++  N  L+ RNIP + +L  
Sbjct: 121 MVVVEAFGDQFSQPKTKELATALTRWGAKPEKRVLLILDEIPENVFLSGRNIPYLKILRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +N+YD+L    +V + +A+E +++ +
Sbjct: 181 DNLNIYDVLVADTIVATATALEKIQEVY 208


>gi|261866794|ref|YP_003254716.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|2500232|sp|P55836|RL4_ACTAC RecName: Full=50S ribosomal protein L4
 gi|1841323|dbj|BAA10948.1| ribosomal protein L4 [Actinobacillus actinomycetemcomitans]
 gi|261412126|gb|ACX81497.1| ribosomal protein L4/L1 family [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 200

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D       KTK LV + + L L +  +I    LD N  LAARN+  +++   QGI
Sbjct: 116 RLVVVDKFEIDAPKTKVLVQKLKELALEDV-LIITASLDENLFLAARNLYKVDVRDAQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199


>gi|317968818|ref|ZP_07970208.1| 50S ribosomal protein L4 [Synechococcus sp. CB0205]
          Length = 211

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  S+   +        ++ R +  Q    R G + +  R+EVA  
Sbjct: 1   MANCVVRDWQGKEAGKASLDLKVAKESSANDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRTYNLAMNRKERRLALRTALMSRAAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KTK +        +   + +++         + + RN+  + L+  
Sbjct: 121 ITVVKGFASGLETPKTKEITAALSRFGIAAGSKVLVVLDAPSEVVRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LV+S+ A+  +++ +
Sbjct: 181 DQLNVFDLLHANSLVVSEEALAKIQEVY 208


>gi|33152957|ref|NP_874310.1| 50S ribosomal protein L4 [Haemophilus ducreyi 35000HP]
 gi|46577205|sp|Q7VKD3|RL4_HAEDU RecName: Full=50S ribosomal protein L4
 gi|33149182|gb|AAP96699.1| 50S ribosomal protein L4 [Haemophilus ducreyi 35000HP]
          Length = 200

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK+LV + + L L++A +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFEVEAPKTKFLVQKLKDLALNDA-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVITTDAVKQIEEML 199


>gi|325000491|ref|ZP_08121603.1| 50S ribosomal protein L4 [Pseudonocardia sp. P1]
          Length = 228

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 4/206 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + ++  +G   G + + + +F +     ++ +V+  Q    R G   +K R EV   
Sbjct: 1   MSTVQIKTPEGAAGGSVELPDHVFDVTANIALMHQVVTAQLNAARQGSHDTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYRQKGTGRARQGSVRAPQFAGGGTVHGPTPRDYSQRTPKKMKAAALRGALSDRARA 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFR---ALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
             + V+  LV      TK              ++ +++   +      L+ RN+P ++++
Sbjct: 121 GRVHVVSALVEGDTPSTKAARKTLEVLLPEAGASRVLVVVERTAETALLSLRNLPQVHMI 180

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
               +N +D+L    +V +++A++  
Sbjct: 181 APDQLNTHDVLVNDVVVFTQTALDDF 206


>gi|260772097|ref|ZP_05881014.1| LSU ribosomal protein L4p (L1e) [Vibrio metschnikovii CIP 69.14]
 gi|260612964|gb|EEX38166.1| LSU ribosomal protein L4p (L1e) [Vibrio metschnikovii CIP 69.14]
          Length = 200

 Score =  177 bits (449), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V     +    ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMV-----KGANALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSVKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK L  + + L+L++ LI+ G ++D N  LAARN+  +++  V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELAAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVTGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ +E+  
Sbjct: 175 DPVSLIAFDKVLMTAAAVKQVEEML 199


>gi|303237464|ref|ZP_07324029.1| 50S ribosomal protein L4 [Prevotella disiens FB035-09AN]
 gi|302482284|gb|EFL45314.1| 50S ribosomal protein L4 [Prevotella disiens FB035-09AN]
          Length = 209

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  ++++E+IF ++P   +L   ++     +R G +KSK RSE A +
Sbjct: 1   MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLDVKQYLADQRQGTAKSKERSEHAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPTPRDYSFKLNKKVKQLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++   +  KTK  V   + + + +   ++   +  ++  L+ARN+    +    
Sbjct: 121 AAIIVVEDFNFEAPKTKDFVNFAKNIKVESKKVLLVLPEAQKSVYLSARNLKKAQVTTAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV+++++++ +++  
Sbjct: 181 QVNTYSVLNADVLVVTENSLKTIDEIL 207


>gi|89076769|ref|ZP_01163042.1| 50S ribosomal protein L4 [Photobacterium sp. SKA34]
 gi|89047582|gb|EAR53196.1| 50S ribosomal protein L4 [Photobacterium sp. SKA34]
          Length = 200

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F     + ++ +V+   +   R G    K RS+V+  G
Sbjct: 1   MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSDVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPLWRSGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++ALI+ G +LD N  LAARN+  +++     I
Sbjct: 116 RLIVVDNFTLEAPKTKALVAKLKELELTDALIVTG-ELDENLFLAARNLYKVDVRDAAAI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++ +A++A+E+  
Sbjct: 175 DPVSLIAFDKIVMTAAAVKAVEEML 199


>gi|329956704|ref|ZP_08297277.1| 50S ribosomal protein L4 [Bacteroides clarus YIT 12056]
 gi|328524076|gb|EGF51152.1| 50S ribosomal protein L4 [Bacteroides clarus YIT 12056]
          Length = 208

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  I+++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   +        L++   + ++N  L+ARN+   N+  + 
Sbjct: 121 NAIVVVEDFNFEAPKTKDFVVMTKNLKVSDKKLLVVLPEANKNVYLSARNVKGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +V ++SA+ A+++  
Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDNIL 207


>gi|110833259|ref|YP_692118.1| 50S ribosomal protein L4 [Alcanivorax borkumensis SK2]
 gi|123050733|sp|Q0VSK2|RL4_ALCBS RecName: Full=50S ribosomal protein L4
 gi|110646370|emb|CAL15846.1| 50S ribosomal protein L4 [Alcanivorax borkumensis SK2]
          Length = 200

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 102/199 (51%), Gaps = 1/199 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL+    G ++VSE  F     + ++ +V+       R G    K RS+V+  G K + Q
Sbjct: 2   NLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRSDVSGGGRKPWRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  +     +RGGGK F  VP      + +K+   AL+  +S+      ++V+D
Sbjct: 62  KGTGRARAGTIRSPIWRGGGKTFAAVPRDHSQKVNRKMYRGALQCIMSELVRQERLVVVD 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                  KTK +  + + ++   +++I    +D N  +A+RN+P +++   QG++   ++
Sbjct: 122 EFTVDSPKTKAVAAKLKGME-LTSVLIVTDNVDENLFMASRNLPKVDVRDSQGVDPVSLI 180

Query: 188 RCSKLVLSKSAIEALEDRF 206
              K++++  A++ LE+  
Sbjct: 181 AFEKVLITVPALKKLEEAL 199


>gi|290477191|ref|YP_003470106.1| 50S ribosomal subunit protein L4 [Xenorhabdus bovienii SS-2004]
 gi|289176539|emb|CBJ83348.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Xenorhabdus bovienii SS-2004]
          Length = 201

 Score =  177 bits (449), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+     
Sbjct: 57  KKPWRQKGTGRARAGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L + LI+ G ++D N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLVQKLKEMALQDVLIVTG-EVDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|212708982|ref|ZP_03317110.1| hypothetical protein PROVALCAL_00014 [Providencia alcalifaciens DSM
           30120]
 gi|212688348|gb|EEB47876.1| hypothetical protein PROVALCAL_00014 [Providencia alcalifaciens DSM
           30120]
          Length = 201

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG +F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L +  +I   +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALQDV-LIITAELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|170077684|ref|YP_001734322.1| 50S ribosomal protein L4 [Synechococcus sp. PCC 7002]
 gi|169885353|gb|ACA99066.1| ribosomal protein L4 [Synechococcus sp. PCC 7002]
          Length = 210

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+  +V+N  GE+ G  ++   +   +    I+ R L  Q    R G S +K R+EV   
Sbjct: 1   MVNCAVKNWQGEEVGQANLDFKVAKEENAAHIVHRALVRQLNNARQGTSSTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     ++GGG  FGP P      + +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWKGGGVIFGPKPKEYNLKMNRKERRLALRTAFHSRNED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK LV       +     +++   ++  N  L+ARNI ++ ++P 
Sbjct: 121 LIVVENFAEQFAAPKTKELVNAMTRWGVASGEKVLLVLAEMTDNVYLSARNIASVKMVPA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            G+N++DIL   K+V++  A+  +++ +
Sbjct: 181 DGLNIFDILNAGKIVVTSEALAKIQEVY 208


>gi|317494341|ref|ZP_07952755.1| ribosomal protein L4/L1 family protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917591|gb|EFV38936.1| ribosomal protein L4/L1 family protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 201

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG +F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LI+ G ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-EVDENLFLAARNLYKVDVRDVTGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|261346934|ref|ZP_05974578.1| ribosomal protein L4/L1 family protein [Providencia rustigianii DSM
           4541]
 gi|282564999|gb|EFB70534.1| ribosomal protein L4/L1 family protein [Providencia rustigianii DSM
           4541]
          Length = 201

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG +F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSAKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L +  +I   +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDV-LIITAELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|91216909|ref|ZP_01253873.1| 50S ribosomal protein L4 [Psychroflexus torquis ATCC 700755]
 gi|91185070|gb|EAS71449.1| 50S ribosomal protein L4 [Psychroflexus torquis ATCC 700755]
          Length = 209

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 112/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++SV ++ G++ G  + +SE +F L+P   ++   ++     KR G  K+K R+E+  +
Sbjct: 1   MKVSVLDIKGKETGREVELSESVFGLEPNDHVVYLDVKQHLANKRQGTHKAKERAEIVGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L KK++ LA +  LS K  +
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPIFRGGGRVFGPRPRDYHFKLNKKLKRLARKTVLSQKLKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N +M++++   +  KTK  +             +I   + ++N  L++RN+    ++ V 
Sbjct: 121 NQLMIVEDFGFEAPKTKEFLNLLDNLNIRDKKSLIVLDESNKNVYLSSRNLKTAKVVNVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y+I+  + L++S+S ++ L++  
Sbjct: 181 ELNTYNIMNSNFLLISESRLDELQNNL 207


>gi|42524374|ref|NP_969754.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100]
 gi|46576695|sp|P61061|RL4_BDEBA RecName: Full=50S ribosomal protein L4
 gi|39576583|emb|CAE80747.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100]
          Length = 209

 Score =  177 bits (448), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 2/205 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V N   E  G + ++ D+F    ++ +L  V++WQ   +R G   +K +  V+  
Sbjct: 1   MATVNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S       GGG AFGP P      LPKKVR L L  ALS     
Sbjct: 61  GKKPFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + ++D++ S+  KT  L  R +A  L  A+++D   +D  F  A++N+P     PV+G
Sbjct: 121 GKLFIVDSMASE-GKTAELNKRLQAFGLKKAVLVDSV-VDDKFNRASKNLPTFKYFPVEG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +NV+D+L+    V++K ++  + DR
Sbjct: 179 LNVFDLLKYDAAVITKDSVAKIVDR 203


>gi|157372775|ref|YP_001480764.1| 50S ribosomal protein L4 [Serratia proteamaculans 568]
 gi|166990953|sp|A8GKJ6|RL4_SERP5 RecName: Full=50S ribosomal protein L4
 gi|157324539|gb|ABV43636.1| ribosomal protein L4/L1e [Serratia proteamaculans 568]
          Length = 201

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK L  + + + L + LI+ G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|327402782|ref|YP_004343620.1| 50S ribosomal protein L4P [Fluviicola taffensis DSM 16823]
 gi|327318290|gb|AEA42782.1| LSU ribosomal protein L4P [Fluviicola taffensis DSM 16823]
          Length = 208

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V +  G+     +++S+ IF ++P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MEVKVIDSKGKATSKKVTLSDTIFGIEPNDHAIYLDVKQHLANRRQGTHKSKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S       GGG+ FGP P      L  K++ LA + A + K   
Sbjct: 61  TRKIKKQKGTGGARAGSVKSGTRVGGGRIFGPRPRNYHFKLNIKLKRLARKSAFAYKAKL 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I+V++++     KT        +   L+  +++       N  L++RN+  + ++   
Sbjct: 121 DSILVLEDVALATPKTAEFKAMLSSLNLLNEKVLMIVGSGSDNVYLSSRNLQRVKVVSAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N YD+L   K+VL++S+IE +E   
Sbjct: 181 SVNTYDVLNAKKVVLTESSIEVIEKIL 207


>gi|318042563|ref|ZP_07974519.1| 50S ribosomal protein L4 [Synechococcus sp. CB0101]
          Length = 211

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  ++   +        ++ R +  Q    R G + +  R+EVA  
Sbjct: 1   MANCVVRDWQGKEAGKATLELKVAKETSANDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRTYNLAMNRKERRLALRTALMSRAAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK +        +++   +++         + + RN+  + L+  
Sbjct: 121 ITVVKGFAAGLDTPKTKEITAALGRFGIADGAKVLVVLDAPSEVVRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LV+S+ A+  +++ +
Sbjct: 181 DQLNVFDLLHANHLVVSEEALAKIQEVY 208


>gi|134096320|ref|YP_001101395.1| 50S ribosomal protein L4 [Herminiimonas arsenicoxydans]
 gi|166234675|sp|A4G9T7|RL4_HERAR RecName: Full=50S ribosomal protein L4
 gi|133740223|emb|CAL63274.1| 50S ribosomal subunit protein L4 [Herminiimonas arsenicoxydans]
          Length = 206

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+    ++  + IF     + ++ +V+       R G  K K R EV +T 
Sbjct: 1   MELKLLNDQGQSSSNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L   LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGLCSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VI++L     KTK L  + + +   +++++    LD N  LA+RN+PN+ +   + 
Sbjct: 121 GRLSVIESLSVDAPKTKLLSQKLKGMG-LDSVLVITDSLDENLLLASRNLPNVLICEPRH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K A+  +E+  
Sbjct: 180 ADPVSLVFYKKILITKLALAKIEEML 205


>gi|315225402|ref|ZP_07867216.1| ribosomal protein L4/L1 family protein [Capnocytophaga ochracea
           F0287]
 gi|314944675|gb|EFS96710.1| ribosomal protein L4/L1 family protein [Capnocytophaga ochracea
           F0287]
          Length = 209

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ G++ G  +++S+ +F ++P   ++   ++     KR G  K+K R+EVA +
Sbjct: 1   MEVAVLNIKGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG+ FGP P      L K V+ LA R ALS K  +
Sbjct: 61  TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKLQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             ++V+++L     KTK      ++L   +   +      + N  L++RN+P  +++   
Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSLFVLPNTNNNVYLSSRNVPTSSVVTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y ++  S +VL++S++  LE   
Sbjct: 181 ELNTYQLVNASNVVLTESSVAVLESIL 207


>gi|303328093|ref|ZP_07358532.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861919|gb|EFL84854.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 210

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V + + ++ G ++++ D+F ++ +  IL  V+R Q   KR G   +K R+ V+  
Sbjct: 1   MATVKVYDQNKQESGEMTLASDVFEIEVRPEILNLVVRAQMAAKRAGTHNAKTRAFVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P      +  KVR+LAL+ ALS +   
Sbjct: 61  GVKPWKQKGTGRARSGSNRSPIWRGGAIIFGPSPRDYGFKVNSKVRALALKMALSSRLAG 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+  +   E KTK+      AL      +I   + +     +ARNIP + L     
Sbjct: 121 ESLLVVKGIELPEAKTKHFAKVAGALG-LGKALIVTPEDNEALSRSARNIPGLTLTTPDR 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V D+L+  +LVL + A+E+++ RF
Sbjct: 180 LSVLDVLKHKQLVLLEGAVESVQARF 205


>gi|307132838|ref|YP_003884854.1| 50S ribosomal subunit protein L4 [Dickeya dadantii 3937]
 gi|306530367|gb|ADN00298.1| 50S ribosomal subunit protein L4 [Dickeya dadantii 3937]
          Length = 201

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + L L + LII G +LD N  LAARN+  +++  V GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKELALDDVLIITG-ELDENLFLAARNLFKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|322436545|ref|YP_004218757.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX9]
 gi|321164272|gb|ADW69977.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX9]
          Length = 226

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 101/209 (48%), Gaps = 2/209 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V NL GE  G   + +++F  +    +L   ++      R G + +K R  V+ +
Sbjct: 1   MANINVVNLGGEKVGEFDLLDEVFNAEINDALLWEAVKHYRAAMRQGTAATKVRKNVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QKGTGRAR  S     +RGGG   GP P    +  PKK    ALR A+S K   
Sbjct: 61  GKKLWKQKGTGRARVGSIRTPIWRGGGTVHGPQPRSYDYQFPKKKLMGALRSAISAKIQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC--QLDRNFQLAARNIPNINLLPV 178
               ++D+    E KTK        L+     ++     +L+    L +RN+  + L+  
Sbjct: 121 GKFTIVDSFEVPEAKTKLYRQALTKLETGKTTLLVESSRKLEEKLYLGSRNLQGVELVLS 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207
             ++ YD+LR    V SK AIEA+++  K
Sbjct: 181 SEVHPYDLLRYEHAVFSKDAIEAIQETLK 209


>gi|157960015|ref|YP_001500049.1| 50S ribosomal protein L4 [Shewanella pealeana ATCC 700345]
 gi|189042885|sp|A8GYX7|RL4_SHEPA RecName: Full=50S ribosomal protein L4
 gi|157845015|gb|ABV85514.1| ribosomal protein L4/L1e [Shewanella pealeana ATCC 700345]
          Length = 201

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSEATFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F          + KK+   AL+   S+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  +   + L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVESFGVEAPKTKELKAKLNEMQLEDV-LIVTPEVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++  AI+ +E+  
Sbjct: 176 DPVSLIAFNKVLVTAEAIKQIEEML 200


>gi|296113796|ref|YP_003627734.1| 50S ribosomal protein L4 [Moraxella catarrhalis RH4]
 gi|295921490|gb|ADG61841.1| 50S ribosomal protein L4 [Moraxella catarrhalis RH4]
 gi|326562141|gb|EGE12469.1| 50S ribosomal protein L4 [Moraxella catarrhalis 7169]
 gi|326564494|gb|EGE14720.1| 50S ribosomal protein L4 [Moraxella catarrhalis 46P47B1]
 gi|326565677|gb|EGE15840.1| 50S ribosomal protein L4 [Moraxella catarrhalis 12P80B1]
 gi|326566246|gb|EGE16398.1| 50S ribosomal protein L4 [Moraxella catarrhalis 103P14B1]
 gi|326567102|gb|EGE17224.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC1]
 gi|326568366|gb|EGE18446.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC7]
 gi|326572267|gb|EGE22262.1| 50S ribosomal protein L4 [Moraxella catarrhalis BC8]
 gi|326574609|gb|EGE24549.1| 50S ribosomal protein L4 [Moraxella catarrhalis O35E]
 gi|326574865|gb|EGE24795.1| 50S ribosomal protein L4 [Moraxella catarrhalis 101P30B1]
 gi|326576189|gb|EGE26104.1| 50S ribosomal protein L4 [Moraxella catarrhalis CO72]
          Length = 200

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 99/202 (49%), Gaps = 4/202 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           +++ + G     + +SE  F  +  + ++ +V+       R G    K R EV+  G K 
Sbjct: 2   NLKTVTGAA---VELSEITFGREFNEALVHQVVTAYLAGARQGTRAQKTRGEVSGGGKKP 58

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     + GGG+AF   P      + +K+   A++  L++      ++
Sbjct: 59  WRQKGTGRARAGSIRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELVRQERLV 118

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           ++D++     KTK L+ +      +   +I   ++D N  LAARNIP +N+L  + ++  
Sbjct: 119 LVDDIAVSAPKTKELIAKLAE-LNAPRALIVTHEVDENLYLAARNIPYVNVLGTREVDPV 177

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            ++   K++++  A +  E+  
Sbjct: 178 SLVSFDKVIMTVEAAKQFEETL 199


>gi|288818163|ref|YP_003432511.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6]
 gi|288787563|dbj|BAI69310.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6]
 gi|308751764|gb|ADO45247.1| ribosomal protein L4/L1e [Hydrogenobacter thermophilus TK-6]
          Length = 199

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 110/196 (56%), Gaps = 2/196 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G + + +D+F ++ ++ IL  V++WQ   +R G   +K R E++Y+G K+  QKGTG 
Sbjct: 2   KLGDMELRDDVFNVEVKRHILWEVIKWQLACRRQGTHSTKTRGELSYSGRKLLPQKGTGN 61

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS- 131
           ARH  +  + F GGG A GP P    ++LPKKVR L L+ ALS K     +++ D++   
Sbjct: 62  ARHGDRGANIFVGGGVAHGPRPTDYYYSLPKKVRKLGLKMALSSKAQEGKMLLFDSINIG 121

Query: 132 KECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
              KTK  +    +  + +  + I   + D     + RN+PN+ +LP +G+NVYDIL   
Sbjct: 122 DVPKTKKAIEFLNSNGIKDIKVTIVIPEKDEIVMKSFRNLPNVKVLPAEGLNVYDILWAD 181

Query: 191 KLVLSKSAIEALEDRF 206
            L + K AIE + +R 
Sbjct: 182 VLAIQKQAIEKIYERL 197


>gi|213962804|ref|ZP_03391064.1| ribosomal protein L4/L1 family protein [Capnocytophaga sputigena
           Capno]
 gi|213954461|gb|EEB65783.1| ribosomal protein L4/L1 family protein [Capnocytophaga sputigena
           Capno]
          Length = 209

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ G++ G  +++S+ +F ++P   ++   ++     KR G  K+K R+EVA +
Sbjct: 1   MEVAVLNIQGKETGRKVTLSDAVFGIEPNNHVVYLDVKRYLANKRQGTHKAKERNEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG+ FGP P      L K V+ LA R ALS K  +
Sbjct: 61  TRKIKKQKGTGTARAGSVKSPVFVGGGRIFGPRPKDYTQKLTKNVKRLARRSALSAKVQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             ++V+++L     KTK      ++L   +   I      + N  L++RN+P  +++   
Sbjct: 121 QALVVVEDLNFDAPKTKDFTAVVKSLGLENKKSIFVLPNTNNNVYLSSRNVPTSSVVTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y ++  S +VL++S++  LE   
Sbjct: 181 ELNTYQLVNASNVVLTESSVAVLESIL 207


>gi|146281171|ref|YP_001171324.1| 50S ribosomal protein L4 [Pseudomonas stutzeri A1501]
 gi|166199849|sp|A4VHN1|RL4_PSEU5 RecName: Full=50S ribosomal protein L4
 gi|145569376|gb|ABP78482.1| ribosomal protein L4 [Pseudomonas stutzeri A1501]
          Length = 200

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 3/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            N++G     I VS+  F  +  + ++ + +       R G  + K RS+V+  G + + 
Sbjct: 3   LNVNGAQA--IEVSDRTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGGKRPWR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++   S  ++V+
Sbjct: 61  QKGTGRARAGTTRGPIWRGGGVTFAARPQNHEQKLNKKMYRAALRSILAELVRSERLVVV 120

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           ++      KTK L ++   + LS+  +I    +D+N  LAARN+P++++  VQG +   +
Sbjct: 121 EDFAVDAPKTKALASKLNGMGLSDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGSDPVSL 179

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA++  E+  
Sbjct: 180 IAYDKVLITVSAVKKFEELL 199


>gi|309973731|gb|ADO96932.1| 50S ribosomal protein L4 [Haemophilus influenzae R2846]
          Length = 200

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + L + +A +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFELDAPKTKVLVQKLKGLAVEDA-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVIVTVDAVKQIEEIL 199


>gi|183600752|ref|ZP_02962245.1| hypothetical protein PROSTU_04346 [Providencia stuartii ATCC 25827]
 gi|188019730|gb|EDU57770.1| hypothetical protein PROSTU_04346 [Providencia stuartii ATCC 25827]
          Length = 201

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG +F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L +  +I   +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDV-LIITAELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|85060255|ref|YP_455957.1| 50S ribosomal protein L4 [Sodalis glossinidius str. 'morsitans']
 gi|109893639|sp|Q2NQM3|RL4_SODGM RecName: Full=50S ribosomal protein L4
 gi|84780775|dbj|BAE75552.1| 50S ribosomal protein L4 [Sodalis glossinidius str. 'morsitans']
          Length = 201

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGSRGQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    K  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEQFSVKAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLYKVDVRDANGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|198274002|ref|ZP_03206534.1| hypothetical protein BACPLE_00138 [Bacteroides plebeius DSM 17135]
 gi|198273080|gb|EDY97349.1| hypothetical protein BACPLE_00138 [Bacteroides plebeius DSM 17135]
          Length = 209

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 110/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF + P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVLNIKGEDTGKKVALNEAIFGITPNDHAIYLDVKQYMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV+ LA + AL+ K  +
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYWFKLNKKVKVLARKSALAYKAQT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+++   +  KTK  V            L++   + ++N  L+ARN+   NL    
Sbjct: 121 NNIVVVEDFTFEAPKTKDFVNVVNNLKVAGKKLLMVLPEANKNVYLSARNLERTNLAIAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV+++SA++A+E+  
Sbjct: 181 ALNTYSVLNAETLVVTESALKAIEETL 207


>gi|262038243|ref|ZP_06011633.1| ribosomal protein, L4/L1 family [Leptotrichia goodfellowii F0264]
 gi|261747710|gb|EEY35159.1| ribosomal protein, L4/L1 family [Leptotrichia goodfellowii F0264]
          Length = 214

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L+   LDG   G + V E+IF ++P + ++  VL  +    R G + +K R+EV   
Sbjct: 1   MPVLNTYKLDGSKAGTVEVKEEIFGIEPNKTVMHEVLVAELAGAREGNASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG   GP P      + KKVR LALR AL+ K  +
Sbjct: 61  GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRDYTKKVNKKVRRLALRSALATKINN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-------DRNFQLAARNIPNI 173
            D++V+D+      KTK  V   +AL+ +    +            D N + + RN+  +
Sbjct: 121 GDLIVLDDFTLDVPKTKTFVQFAKALNFAGEKQLFIADYNGETFNRDINLEYSVRNLEKV 180

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             L  + ++++ +++  K+V++K A+  +E+  
Sbjct: 181 MTLDSRSLSIFWLIKQDKIVVTKEALATIEEVL 213


>gi|270294751|ref|ZP_06200952.1| 50S ribosomal protein L4/L1 [Bacteroides sp. D20]
 gi|270273998|gb|EFA19859.1| 50S ribosomal protein L4/L1 [Bacteroides sp. D20]
          Length = 208

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  I+++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++V+++   +  KTK  V   +        L++   + ++N  L+ARN+   N+  + 
Sbjct: 121 NAVVVVEDFSFEAPKTKDFVVMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +V ++SA+ A+++  
Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDNIL 207


>gi|209528358|ref|ZP_03276809.1| ribosomal protein L4/L1e [Arthrospira maxima CS-328]
 gi|209491211|gb|EDZ91615.1| ribosomal protein L4/L1e [Arthrospira maxima CS-328]
          Length = 210

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++  +RN +GE+ G  ++   +   +    I+ R L  Q    R G + +K RSEV   
Sbjct: 1   MVDCVIRNWEGEEVGQTTLELKVAKEENASHIVHRALVRQQAAARQGTASTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTAFQSRAED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK L              +++   +   N  L+ RN+  I +   
Sbjct: 121 IVVVEEFVTQLPRPKTKDLTDALARWGVSPEAKVLLVLPEKQENVYLSGRNVAKIRICLA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   K+V + +A+  +++ +
Sbjct: 181 DSLNVYDVLAADKIVTTANALAKIQEVY 208


>gi|210631083|ref|ZP_03296739.1| hypothetical protein COLSTE_00624 [Collinsella stercoris DSM 13279]
 gi|210160171|gb|EEA91142.1| hypothetical protein COLSTE_00624 [Collinsella stercoris DSM 13279]
          Length = 208

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V+N +G+      +++ ++ ++P   ++  +++ Q    R G   +KGRSEV+  
Sbjct: 1   MSKFEVKNAEGKQVAEAELADAVYGIEPNIHVMHHIVKCQQACWRQGTQSTKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+RGGG  FGP P   V  +  K   LA+R ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAAQWRGGGVIFGPKPRTYVKRMNNKEVKLAMRSALSAKLRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++++D+   ++  TK  V   +AL L    + I   + D N  L+ RNIP   ++   
Sbjct: 121 NELVLVDDYGFEKPSTKAAVAMLKALGLEGKRLTIIVREDDINAYLSFRNIPKTWIITPA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             N YD++    L++         +  
Sbjct: 181 EANTYDLINNGALIMPADVAAHFGEVL 207


>gi|325577128|ref|ZP_08147612.1| 50S ribosomal protein L4 [Haemophilus parainfluenzae ATCC 33392]
 gi|301155331|emb|CBW14797.1| 50S ribosomal subunit protein L4 [Haemophilus parainfluenzae T3T1]
 gi|325160710|gb|EGC72831.1| 50S ribosomal protein L4 [Haemophilus parainfluenzae ATCC 33392]
          Length = 200

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + L + +A +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFELDAPKTKVLVQKLKDLAVEDA-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVIVTVDAVKQIEEIL 199


>gi|261823231|ref|YP_003261337.1| 50S ribosomal protein L4 [Pectobacterium wasabiae WPP163]
 gi|261607244|gb|ACX89730.1| ribosomal protein L4/L1e [Pectobacterium wasabiae WPP163]
          Length = 201

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSAKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++     I
Sbjct: 117 RLIVVETFSVEAPKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|116667437|pdb|2GYA|C Chain C, Structure Of The 50s Subunit Of A Pre-Translocational E.
           Coli Ribosome Obtained By Fitting Atomic Models For Rna
           And Protein Components Into Cryo-Em Map Emd-1056
 gi|116667489|pdb|2GYC|C Chain C, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
           Ribosome Complex Obtained By Fitting Atomic Models For
           Rna And Protein Components Into Cryo-Em Map Emd-1143
          Length = 198

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 5/203 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           +   ++   K+V++  A++ +E+
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEE 198


>gi|16272719|ref|NP_438937.1| 50S ribosomal protein L4 [Haemophilus influenzae Rd KW20]
 gi|68249374|ref|YP_248486.1| 50S ribosomal protein L4 [Haemophilus influenzae 86-028NP]
 gi|145630523|ref|ZP_01786303.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021]
 gi|145632131|ref|ZP_01787866.1| 50S ribosomal protein L4 [Haemophilus influenzae 3655]
 gi|145634811|ref|ZP_01790519.1| 50S ribosomal protein L4 [Haemophilus influenzae PittAA]
 gi|145636666|ref|ZP_01792333.1| 50S ribosomal protein L4 [Haemophilus influenzae PittHH]
 gi|145638422|ref|ZP_01794032.1| 50S ribosomal protein L4 [Haemophilus influenzae PittII]
 gi|148826577|ref|YP_001291330.1| 50S ribosomal protein L4 [Haemophilus influenzae PittEE]
 gi|148827967|ref|YP_001292720.1| 50S ribosomal protein L4 [Haemophilus influenzae PittGG]
 gi|229844645|ref|ZP_04464784.1| 50S ribosomal protein L4 [Haemophilus influenzae 6P18H1]
 gi|229845828|ref|ZP_04465940.1| 50S ribosomal protein L4 [Haemophilus influenzae 7P49H1]
 gi|260579869|ref|ZP_05847699.1| ribosomal protein L4/L1 [Haemophilus influenzae RdAW]
 gi|260581596|ref|ZP_05849393.1| ribosomal protein L4/L1 [Haemophilus influenzae NT127]
 gi|319775288|ref|YP_004137776.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3047]
 gi|319897728|ref|YP_004135925.1| 50S ribosomal subunit protein l4 [Haemophilus influenzae F3031]
 gi|329122784|ref|ZP_08251356.1| 50S ribosomal protein L4 [Haemophilus aegyptius ATCC 11116]
 gi|1173051|sp|P44345|RL4_HAEIN RecName: Full=50S ribosomal protein L4
 gi|81336199|sp|Q4QMC1|RL4_HAEI8 RecName: Full=50S ribosomal protein L4
 gi|166234672|sp|A5UDU6|RL4_HAEIE RecName: Full=50S ribosomal protein L4
 gi|166234673|sp|A5UHT1|RL4_HAEIG RecName: Full=50S ribosomal protein L4
 gi|1573788|gb|AAC22437.1| ribosomal protein L4 (rpL4) [Haemophilus influenzae Rd KW20]
 gi|68057573|gb|AAX87826.1| 50S ribosomal protein L4 [Haemophilus influenzae 86-028NP]
 gi|144983913|gb|EDJ91355.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021]
 gi|144987038|gb|EDJ93568.1| 50S ribosomal protein L4 [Haemophilus influenzae 3655]
 gi|145267977|gb|EDK07973.1| 50S ribosomal protein L4 [Haemophilus influenzae PittAA]
 gi|145270192|gb|EDK10128.1| 50S ribosomal protein L4 [Haemophilus influenzae PittHH]
 gi|145272751|gb|EDK12658.1| 50S ribosomal protein L4 [Haemophilus influenzae PittII]
 gi|148716737|gb|ABQ98947.1| 50S ribosomal protein L4 [Haemophilus influenzae PittEE]
 gi|148719209|gb|ABR00337.1| 50S ribosomal protein L4 [Haemophilus influenzae PittGG]
 gi|229810832|gb|EEP46549.1| 50S ribosomal protein L4 [Haemophilus influenzae 7P49H1]
 gi|229812359|gb|EEP48049.1| 50S ribosomal protein L4 [Haemophilus influenzae 6P18H1]
 gi|260093153|gb|EEW77086.1| ribosomal protein L4/L1 [Haemophilus influenzae RdAW]
 gi|260095189|gb|EEW79080.1| ribosomal protein L4/L1 [Haemophilus influenzae NT127]
 gi|301169495|emb|CBW29096.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae 10810]
 gi|309751561|gb|ADO81545.1| 50S ribosomal protein L4 [Haemophilus influenzae R2866]
 gi|317433234|emb|CBY81609.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3031]
 gi|317449879|emb|CBY86090.1| 50S ribosomal subunit protein L4 [Haemophilus influenzae F3047]
 gi|327472048|gb|EGF17486.1| 50S ribosomal protein L4 [Haemophilus aegyptius ATCC 11116]
          Length = 200

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + L + +A +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFELDAPKTKVLVQKLKDLAVEDA-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVIVTVDAVKQIEEIL 199


>gi|268593542|ref|ZP_06127763.1| ribosomal protein L4/L1 family protein [Providencia rettgeri DSM
           1131]
 gi|291310820|gb|EFE51273.1| ribosomal protein L4/L1 family protein [Providencia rettgeri DSM
           1131]
          Length = 201

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG +F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSVKSPIWRSGGVSFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L +  +I   +LD N  LAARN+  +++    GI
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKDMALEDV-LIITAELDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|284006162|emb|CBA71404.1| 50S ribosomal protein L4 [Arsenophonus nasoniae]
          Length = 199

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 1/190 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G K + QKGTGRAR  
Sbjct: 10  LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWRQKGTGRARAG 69

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
           S     +R GG  F   P      + KK+   AL+  LS+    + ++V++    +  KT
Sbjct: 70  SVKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFALEAPKT 129

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           K LV + + + L +  +I   ++D N  LAARN+  +++    GI+   ++   K+V++ 
Sbjct: 130 KLLVQKLKEMALDDV-LIVTNEVDENLFLAARNLYKVDVRDAIGIDPVSLIAFDKVVMTA 188

Query: 197 SAIEALEDRF 206
            A++ +E+  
Sbjct: 189 DAVKQIEEML 198


>gi|254506493|ref|ZP_05118635.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus 16]
 gi|219550667|gb|EED27650.1| ribosomal protein, L4/L1 family [Vibrio parahaemolyticus 16]
          Length = 197

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/195 (29%), Positives = 103/195 (52%), Gaps = 1/195 (0%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           +    ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G+K + QKGTG
Sbjct: 3   KGADALTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGGAKPWRQKGTG 62

Query: 72  RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           RAR  +     +R GG  F   P      + KK+   A++  LS+      ++V+DN   
Sbjct: 63  RARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVDNFSV 122

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
           +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++   V GI+   ++   K
Sbjct: 123 EAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDVAGIDPVSLIAFDK 181

Query: 192 LVLSKSAIEALEDRF 206
           +V++  A++ +E+  
Sbjct: 182 VVMTAEAVKQVEEML 196


>gi|304384276|ref|ZP_07366687.1| ribosomal protein L4/L1 family protein [Prevotella marshii DSM
           16973]
 gi|304334592|gb|EFM00874.1| ribosomal protein L4/L1 family protein [Prevotella marshii DSM
           16973]
          Length = 209

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 111/203 (54%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N++G++ G  ++++E IFA++P   +L   ++     +R G +K+K RSE++ +
Sbjct: 1   MEVNVLNINGQETGRKVTLNESIFAIEPNDHVLYLAVKQYLANQRQGTAKTKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L +KV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPLLVGGARVFGPKPRDYGFKLNRKVKVLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  +   +        L++   + ++N  L+ARN+    ++   
Sbjct: 121 NAIIVVEDFDIETPKTKDFINITKNLNVDGRKLLLVLPKENKNVYLSARNLQRSEVMSAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y IL    LV+++++++ +
Sbjct: 181 TLNSYKILNADVLVVTENSLKVI 203


>gi|251793828|ref|YP_003008560.1| 50S ribosomal protein L4 [Aggregatibacter aphrophilus NJ8700]
 gi|315633456|ref|ZP_07888746.1| 50S ribosomal protein L4 [Aggregatibacter segnis ATCC 33393]
 gi|247535227|gb|ACS98473.1| ribosomal protein L4/L1 family [Aggregatibacter aphrophilus NJ8700]
 gi|315477498|gb|EFU68240.1| 50S ribosomal protein L4 [Aggregatibacter segnis ATCC 33393]
          Length = 200

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D       KTK LV + + L L +  +I    LD N  LAARN+  +++   QGI
Sbjct: 116 RLVVVDKFEIDAPKTKVLVQKLKELALEDV-LIITASLDENLFLAARNLYKVDVRDAQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199


>gi|167764371|ref|ZP_02436496.1| hypothetical protein BACSTE_02755 [Bacteroides stercoris ATCC
           43183]
 gi|167697776|gb|EDS14355.1| hypothetical protein BACSTE_02755 [Bacteroides stercoris ATCC
           43183]
          Length = 208

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  I+++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + AL+ K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALAYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   +        L++   + ++N  L+ARN+   N+  + 
Sbjct: 121 NAIIVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVVLPEANKNVYLSARNVKGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +V ++SA+ A+++  
Sbjct: 181 GLNTYRVLDAGVVVFAESALSAIDNIL 207


>gi|220906720|ref|YP_002482031.1| 50S ribosomal protein L4 [Cyanothece sp. PCC 7425]
 gi|254803729|sp|B8HMQ5|RL4_CYAP4 RecName: Full=50S ribosomal protein L4
 gi|219863331|gb|ACL43670.1| ribosomal protein L4/L1e [Cyanothece sp. PCC 7425]
          Length = 210

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   +++  G + G  ++   +   +    I+ R LR Q    R G + +K R+EV   
Sbjct: 1   MVACVIKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      +  K R LALR AL  +  S
Sbjct: 61  GRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRLALRTALISRSDS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++   +      KTK L           ++ +++          L+ARNI  + L+  
Sbjct: 121 LIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L    +V +  A+  +++ +
Sbjct: 181 TSLNVFDLLNADWIVATVEALGKIQEVY 208


>gi|51591269|emb|CAH22935.1| 50S ribosomal protein L4 [Yersinia pseudotuberculosis IP 32953]
          Length = 197

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 1/192 (0%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
           G ++VSE  F     + ++ +V+   +   R G    K R+EV  +G K + QKGTGRAR
Sbjct: 6   GALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 65

Query: 75  HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134
             S     +R GG  F   P      + KK+   AL+  LS+    + +++++    +  
Sbjct: 66  AGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEAP 125

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
           KTK L  + + + L + LI+ G +LD N  LAARN+  +++  V GI+   ++   K+V+
Sbjct: 126 KTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVVM 184

Query: 195 SKSAIEALEDRF 206
           +  A++ +E+  
Sbjct: 185 TADAVKQVEEML 196


>gi|39997948|ref|NP_953899.1| 50S ribosomal protein L4 [Geobacter sulfurreducens PCA]
 gi|46577153|sp|P61063|RL4_GEOSL RecName: Full=50S ribosomal protein L4
 gi|39984893|gb|AAR36249.1| ribosomal protein L4 [Geobacter sulfurreducens PCA]
 gi|298506887|gb|ADI85610.1| ribosomal protein L4 [Geobacter sulfurreducens KN400]
          Length = 207

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 113/207 (54%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V ++     GV+ +++++F  + ++ ++   ++ Q   +R G    K R+ V+  
Sbjct: 1   MATIDVFDISKNKVGVMDLNDNVFNGEVKEYLIHEAIKVQLANRRAGTVSVKNRAIVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG+AR        F GGG AFGP P +   ++ KK R  A+R ALS  +  
Sbjct: 61  GKKPYRQKGTGQARQGCIRAPHFVGGGVAFGPRPKVYNLSMNKKARKAAVRSALSMLYKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V+D+       TK  VT  +A D     ++   + + N +L+ARN+ ++ +L  + 
Sbjct: 121 NKLSVLDSFTLPSISTKGFVTVLKAFD-LAKTLVVVDEPNLNLELSARNVKDVKVLKAEH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           +NV+DI++ + +++++SA+  +E   +
Sbjct: 180 LNVFDIVKYNNIIVTQSAVRTIEGVLQ 206


>gi|32035714|ref|ZP_00135595.1| COG0088: Ribosomal protein L4 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209225|ref|YP_001054450.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae L20]
 gi|165977197|ref|YP_001652790.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|190151115|ref|YP_001969640.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|303250013|ref|ZP_07336215.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|303253187|ref|ZP_07339336.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307246690|ref|ZP_07528760.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307248832|ref|ZP_07530845.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307251059|ref|ZP_07532983.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|307253445|ref|ZP_07535316.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307255675|ref|ZP_07537479.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307257858|ref|ZP_07539615.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307260127|ref|ZP_07541837.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307262256|ref|ZP_07543905.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|307264465|ref|ZP_07546050.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|322515634|ref|ZP_08068612.1| 50S ribosomal protein L4 [Actinobacillus ureae ATCC 25976]
 gi|166234628|sp|A3N359|RL4_ACTP2 RecName: Full=50S ribosomal protein L4
 gi|226730606|sp|B3GZ12|RL4_ACTP7 RecName: Full=50S ribosomal protein L4
 gi|226730607|sp|B0BST2|RL4_ACTPJ RecName: Full=50S ribosomal protein L4
 gi|126098017|gb|ABN74845.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|165877298|gb|ABY70346.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|189916246|gb|ACE62498.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|302647869|gb|EFL78076.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302651076|gb|EFL81230.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306852390|gb|EFM84625.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306854759|gb|EFM86949.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306856889|gb|EFM89021.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306859124|gb|EFM91166.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306861352|gb|EFM93342.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306863764|gb|EFM95690.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306865773|gb|EFM97651.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868019|gb|EFM99846.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306870162|gb|EFN01921.1| 50S ribosomal protein L4 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|322118285|gb|EFX90568.1| 50S ribosomal protein L4 [Actinobacillus ureae ATCC 25976]
          Length = 200

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + L L++A +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFEIEAPKTKVLVQKLKDLALNDA-LIITANLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVITADAVKQIEEML 199


>gi|317503979|ref|ZP_07961987.1| 50S ribosomal protein L4 [Prevotella salivae DSM 15606]
 gi|315665005|gb|EFV04664.1| 50S ribosomal protein L4 [Prevotella salivae DSM 15606]
          Length = 209

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 113/203 (55%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N+ G++ G  ++++E IF ++P   +L   ++     +R G +K+K RSE++ +
Sbjct: 1   MEVSVLNIKGQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLAAQRQGTAKTKERSELSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRNYDFKLNKKVKVLARKSALSYKVQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++L  +  KTK  V   + + +     ++   ++++N  L+ARNI    ++   
Sbjct: 121 NAIIVVEDLKFEAPKTKEFVNFAKNIKVEGKKTLVLLSEVNKNVYLSARNIQGTEIMTAT 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +L    +V+++SA++A+
Sbjct: 181 SLNTYKVLNADIVVIAESALKAI 203


>gi|152980648|ref|YP_001355100.1| large subunit ribosomal protein L4 [Janthinobacterium sp.
           Marseille]
 gi|166234676|sp|A6T3K3|RL4_JANMA RecName: Full=50S ribosomal protein L4
 gi|151280725|gb|ABR89135.1| large subunit ribosomal protein L4 [Janthinobacterium sp.
           Marseille]
          Length = 206

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+    ++  + IF     + ++ +V+       R G  K K R EV +T 
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    +   LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VI+NL  +  KTK L  + + +   +++++    LD N  LA+RN+PN+ +   + 
Sbjct: 121 GRLSVIENLSVEAPKTKLLSQKLKGMG-LDSVLVITDSLDENLLLASRNLPNVLICEPRH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K A+  +E+  
Sbjct: 180 ADPVSLVFYKKILITKLALAKIEEML 205


>gi|53803549|ref|YP_114787.1| 50S ribosomal protein L4 [Methylococcus capsulatus str. Bath]
 gi|81681358|sp|Q605B3|RL4_METCA RecName: Full=50S ribosomal protein L4
 gi|53757310|gb|AAU91601.1| ribosomal protein L4 [Methylococcus capsulatus str. Bath]
          Length = 205

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           + LS+  ++    G + VS+ +F     + ++ +++       R G    K RS+V+  G
Sbjct: 1   MSLSIPKIENGAAGDLEVSDKVFGQGFNESLVHQLVVGYLAAARSGTKAQKSRSDVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKG+G AR  +     +R GG  F          L KK+   A+R   S+     
Sbjct: 61  KKPWKQKGSGHARAGTTRSPLWRTGGVTFAASNRNYRQKLNKKMYRAAVRSIFSELLRQG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V D +V    KT+ L  + ++       +I   QLD N  L++RN+PN+++     +
Sbjct: 121 RLVVSDGIVPTSPKTRELAAKLKSFGEGY-TVILAEQLDLNLALSSRNLPNVSINTADTL 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +  D++   +++ + SAI  LE R 
Sbjct: 180 SPVDLVHAERVIATSSAIRKLEVRL 204


>gi|56477595|ref|YP_159184.1| 50S ribosomal protein L4 [Aromatoleum aromaticum EbN1]
 gi|81598743|sp|Q5P331|RL4_AZOSE RecName: Full=50S ribosomal protein L4
 gi|56313638|emb|CAI08283.1| 50S ribosomal protein L4 [Aromatoleum aromaticum EbN1]
          Length = 206

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 101/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G     +  S+ +F     + ++ +V+       R G    KGR+EV+ + 
Sbjct: 1   MELKLLNDQGAQSATLQASDALFGRDYNEALIHQVVVAYMANARSGNRAQKGRAEVSKST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       L +K+    +   LS     
Sbjct: 61  RKPWRQKGTGRARAGMASSPLWRGGGRVFPNSPEDNFSQKLNRKMYRAGVASILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + +++N   +  KT+ L  + + +   +++++   + D N  L++RN+  + +L V  
Sbjct: 121 DRLAIVENFSVEAPKTRLLSQKLKGMG-LDSVLVITDEFDENLFLSSRNLHKVLVLEVSE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++   +++++K A+  +E+ ++
Sbjct: 180 TDPVSLVHYDRVIVTKGALAKMEEAWQ 206


>gi|330430100|gb|AEC21434.1| 50S ribosomal protein L4 [Pusillimonas sp. T7-7]
          Length = 206

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+    ++  + IF     + ++ +++       R G    KGR  V ++ 
Sbjct: 1   MELKLLNDQGQSSATVAAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKGRDTVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+AF   P       + KK+    LR  LS     
Sbjct: 61  KKPWRQKGTGRARSGMTSSPIWRGGGRAFPNSPDENFSQKVNKKMYRAGLRAILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+D  V    KTK    + +++    +++I    LD N  LA RN+P++ ++  + 
Sbjct: 121 DRIAVVDTFVLDAPKTKLAADKLKSMG-LESVLIITDVLDENVYLATRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI  LE+  
Sbjct: 180 ADPLSLIHYKKVLITKPAIAQLEEML 205


>gi|308178135|ref|YP_003917541.1| 50S ribosomal protein L4 [Arthrobacter arilaitensis Re117]
 gi|307745598|emb|CBT76570.1| 50S ribosomal protein L4 [Arthrobacter arilaitensis Re117]
          Length = 200

 Score =  176 bits (447), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 1/190 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +  +IF ++    +L +V+  Q    R G  K+K RSEV+  G K + QKGTGRAR  
Sbjct: 7   VELPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKDRSEVSGAGRKPFKQKGTGRARQG 66

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KECK 135
           S       GGG   GP P       PKK+++ ALR ALSD+   + + VI+NLV+  +  
Sbjct: 67  SIRAPHMTGGGIVHGPTPRDYSQRTPKKMKAAALRGALSDRARFDRVHVIENLVAGDKPS 126

Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           TK  +   R++     L++   + +    L+ RN+ N+++L V  +N YD+L    +V +
Sbjct: 127 TKDALATLRSVTERKNLLVVIDRANDVAALSVRNLVNVHVLYVDQLNTYDVLVSDDVVFT 186

Query: 196 KSAIEALEDR 205
           K+A +AL  +
Sbjct: 187 KAAFDALVQK 196


>gi|294674770|ref|YP_003575386.1| 50S ribosomal protein L4 [Prevotella ruminicola 23]
 gi|294471640|gb|ADE81029.1| ribosomal protein L4 [Prevotella ruminicola 23]
          Length = 209

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N+  ++ G  ++++E IF ++P   +L   ++     +R G +KSK RSE++ +
Sbjct: 1   MEVSVLNIKCQETGRKVTLNEAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G ARH   +    RGGG+ FGP P      L KKV++LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARHGDINSPLLRGGGRVFGPTPRDYGFKLNKKVKALARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  +   +         +      + N  L+ARN+    ++   
Sbjct: 121 NAIVVVEDFTMEAPKTKEFINIAKNLKVDGKKTLFVMSGTNNNVYLSARNLQGTEVMEAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +L    LV+++ A+E +
Sbjct: 181 LVNTYKVLNADALVITEKALETI 203


>gi|89891147|ref|ZP_01202655.1| 50S ribosomal protein L4 (rplD) [Flavobacteria bacterium BBFL7]
 gi|89516791|gb|EAS19450.1| 50S ribosomal protein L4 (rplD) [Flavobacteria bacterium BBFL7]
          Length = 209

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++SV ++ G++ G  + +S+ IFA++P    +   ++     +R G  K+K R+E+  +
Sbjct: 1   MKVSVIDIKGKETGRQVELSDSIFAIEPNDHAIYLDVKQYLANQRQGTHKAKQRAEITGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGPVP      L K  + LA +  LS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPVPRDYSFKLNKGQKRLARKSVLSQKMAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            ++ ++++      KTK  +   ++L   +   +      + N  L++RN     ++   
Sbjct: 121 GNLHIVEDFNFDAPKTKNFIEVLKSLGLDNKKSLFVLGGSNNNVYLSSRNFKGSEVVTNS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y IL  + +V+ + ++E +E+  
Sbjct: 181 ELSTYKILHANSVVVLEGSLEGIEETL 207


>gi|225873077|ref|YP_002754536.1| ribosomal protein L4 [Acidobacterium capsulatum ATCC 51196]
 gi|254803706|sp|C1F641|RL4_ACIC5 RecName: Full=50S ribosomal protein L4
 gi|225791588|gb|ACO31678.1| ribosomal protein L4 [Acidobacterium capsulatum ATCC 51196]
          Length = 222

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 3/210 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFA-LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M  + V +L G+  G + +++++FA  +  + +L   ++      R G   +K +  V+ 
Sbjct: 1   MANVDVLDLGGKKVGSLELADELFAPSEVNEALLWEAVKHYRASLRQGTHATKNKKLVSG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           +G K++ QKGTGRAR  S     +R GG   GP P    +A PKK    ALR AL+ K  
Sbjct: 61  SGKKLWKQKGTGRARVGSVRSPLWRHGGTVHGPQPRSYDYAFPKKKLMGALRSALAAKLA 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLP 177
              ++V+++    E KTK   T    L+ + + ++         N  L ARN+ N+ L+ 
Sbjct: 121 DGKLIVVESFEVSEPKTKLYRTALDKLEANRSTLLVESSQSLTENLYLGARNLANVELVL 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRFK 207
              ++ YD+LR  + + S++AIE L++  +
Sbjct: 181 NNEVHPYDLLRYERAIFSRAAIEKLQESLQ 210


>gi|260175417|ref|ZP_05761829.1| 50S ribosomal protein L4 [Bacteroides sp. D2]
 gi|315923647|ref|ZP_07919887.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697522|gb|EFS34357.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 208

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 115/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMTNQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI + N+  + 
Sbjct: 121 DAIVVVEDFTFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIESANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++++++A+++  
Sbjct: 181 GLNTYRVLNAGVVVLTENSLKAIDNIL 207


>gi|288929339|ref|ZP_06423184.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon
           317 str. F0108]
 gi|288329441|gb|EFC68027.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon
           317 str. F0108]
          Length = 209

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 107/203 (52%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N++G++ G  + +++ IF ++P   +L   ++     +R G +K+K RSE++ +
Sbjct: 1   MEVSVLNINGQETGRKVVLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKTKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKVKVLARKSALSYKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  V   +         ++    +++N  L+ARN+    ++   
Sbjct: 121 NAIIVVEDFEMAAPKTKEYVNIVKNLQLGERKSLLLLPNVNKNVYLSARNLQRSEVMTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +L    LV+++ ++EA+
Sbjct: 181 ALNAYKVLNADVLVITEKSLEAI 203


>gi|110639534|ref|YP_679743.1| 50S ribosomal protein L4 [Cytophaga hutchinsonii ATCC 33406]
 gi|122966548|sp|Q11QB3|RL4_CYTH3 RecName: Full=50S ribosomal protein L4
 gi|110282215|gb|ABG60401.1| LSU ribosomal protein L4P [Cytophaga hutchinsonii ATCC 33406]
          Length = 208

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELS+ N+ G+D G  + +S+DIFA++P    +   ++     +R G  K+K R+EV+++
Sbjct: 1   MELSLLNIKGKDTGKKVVLSDDIFAVEPNNHAIYLDVKQYLAHQRQGTHKAKERAEVSFS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S+    F GGG  FGP P      + KKV+ LA + A S K   
Sbjct: 61  TKKLKKQKGTGGARAGSRKSPIFVGGGTIFGPRPRTYGFKVNKKVKDLARKSAFSHKLKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +++ V++N      KTK  +   + L   +   +     +D+N  L++RN+    ++ V 
Sbjct: 121 SNVTVLENFTLNAPKTKDYLAILKDLSLDTKKTLFVIADIDKNIILSSRNLKKAKVVSVD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN YD++   K+V+S+ ++  +E   
Sbjct: 181 QINTYDLVNADKVVISEGSVSKIEALL 207


>gi|224537818|ref|ZP_03678357.1| hypothetical protein BACCELL_02705 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520504|gb|EEF89609.1| hypothetical protein BACCELL_02705 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 208

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  I+++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG +AFGP P      L KKV++LA + AL+ K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARAFGPKPRDYYFKLNKKVKTLARKSALAYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++++++   +  KTK  V   +        L++   + ++N  L+ARN+ + N+  V 
Sbjct: 121 NAVVIVEDFNFEAPKTKDFVAMTKKLKVSDKKLLVILPEANKNVYLSARNVESANVQTVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +V ++SA+ A+++  
Sbjct: 181 GLNTYRVLNAGVVVFTESALSAIDNIL 207


>gi|311748513|ref|ZP_07722298.1| ribosomal protein L4/L1 [Algoriphagus sp. PR1]
 gi|126577029|gb|EAZ81277.1| ribosomal protein L4/L1 [Algoriphagus sp. PR1]
          Length = 209

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 2/204 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL+V N  GED G  +S+SE+IF ++P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MELAVINHKGEDTGRKVSLSEEIFGIEPNDHAIYLDVKQYLANQRQGTHKSKERNEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L KK++ LA + ALS K   
Sbjct: 61  TKKIKKQKGTGSARAGSIKSPIFRGGGRVFGPSPRNYSFKLNKKLKQLARKSALSYKVKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N + V++NL  +  KTK  +     L       ++   + ++N  L++RN+P   ++ V 
Sbjct: 121 NSLSVLENLSFEAPKTKSYLALLNGLSLADKKTLVVIPEENKNVYLSSRNLPKSKVVTVN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALE 203
            +N Y +L    LV+ + ++  LE
Sbjct: 181 DVNTYQVLNADHLVICEGSVSMLE 204


>gi|119484832|ref|ZP_01619314.1| 50S ribosomal protein L4 [Lyngbya sp. PCC 8106]
 gi|119457650|gb|EAW38774.1| 50S ribosomal protein L4 [Lyngbya sp. PCC 8106]
          Length = 210

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  VRN +GE  G  ++   +   +    I+ R L  Q    R G + SK R+EV   
Sbjct: 1   MADCVVRNWEGEQVGQANLELKVAKEENAAHIVHRALVRQMNNARQGSASSKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFSQKMNRKERRLALRTALQSRIED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK LV        +  + +++   +   N  L+ RNI  + +   
Sbjct: 121 IVVVEEFLEQLPRPKTKDLVAAMSRWGIEPESKVLLVLPEKQENVYLSGRNIARMRICLA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYDIL    +V + +A+E +++ +
Sbjct: 181 DSLNVYDILHADNIVTTAAALEKIQEVY 208


>gi|253998015|ref|YP_003050078.1| 50S ribosomal protein L4/L1e [Methylovorus sp. SIP3-4]
 gi|253984694|gb|ACT49551.1| ribosomal protein L4/L1e [Methylovorus sp. SIP3-4]
          Length = 208

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL + + +G+     + VSE  F  +  + ++ +V+       R       GR  V++T
Sbjct: 1   MELKLIDKNGKPAKSGVEVSEVTFGREFNEALVHQVVVAYQANARTATRAQLGRGTVSHT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119
             K + QKGTGRAR    S   +RGGG+AF   P     H + +KV    +R  LS+   
Sbjct: 61  THKPWNQKGTGRARSGMSSSPIWRGGGRAFPNSPDENFSHKVNRKVYRAGMRSILSELVR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            + + VI+  V +  KTK LV + + L     +++     D N  L+ARN+PN+ ++  Q
Sbjct: 121 QDRLSVIEEFVVETPKTKALVEKIKGLGYGEGVLVLVDGFDENLYLSARNLPNVLVVEAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             +   ++R   +V +K+A++ LE+  
Sbjct: 181 YADPVSLVRFPNVVATKAAVKKLEEML 207


>gi|161616465|ref|YP_001590430.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|296105027|ref|YP_003615173.1| 50S ribosomal protein L4 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|161365829|gb|ABX69597.1| hypothetical protein SPAB_04280 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|295059486|gb|ADF64224.1| 50S ribosomal protein L4 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 197

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 1/190 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           ++VSE  F     + ++ +V+   +   R G    K R+EV  +G K + QKGTGRAR  
Sbjct: 8   LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSG 67

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
           S     +R GG  F   P      + KK+   AL+  LS+    + ++V++    +  KT
Sbjct: 68  SIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKT 127

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           K L  + + + L + LII G +LD N  LAARN+  +++    GI+   ++   K+V++ 
Sbjct: 128 KLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTA 186

Query: 197 SAIEALEDRF 206
            A++ +E+  
Sbjct: 187 DAVKQVEEML 196


>gi|148982484|ref|ZP_01816780.1| 50S ribosomal protein L4 [Vibrionales bacterium SWAT-3]
 gi|145960449|gb|EDK25828.1| 50S ribosomal protein L4 [Vibrionales bacterium SWAT-3]
          Length = 200

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F     + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+LS+ LI+ G ++D N  LAARN+  ++   V G+
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELSDVLIVTG-EVDENLFLAARNLYKVDARDVAGV 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVLMTADAVKQVEEML 199


>gi|300721366|ref|YP_003710637.1| 50S ribosomal subunit protein L4 [Xenorhabdus nematophila ATCC
           19061]
 gi|297627854|emb|CBJ88400.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Xenorhabdus nematophila ATCC 19061]
          Length = 201

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK LV + + + L + LI+ G ++D N  LAARN+  +++    GI
Sbjct: 117 RLIIVEKFSVEAPKTKLLVQKLKEMALEDVLIVTG-EVDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTAEAVKQVEEML 200


>gi|257784962|ref|YP_003180179.1| 50S ribosomal protein L4/L1e [Atopobium parvulum DSM 20469]
 gi|257473469|gb|ACV51588.1| ribosomal protein L4/L1e [Atopobium parvulum DSM 20469]
          Length = 208

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  ++N++G+  G   +S D++ ++P   ++ +V+  Q    R G   +K R EV+  
Sbjct: 1   MSKYEIKNVEGKKVGTTELSSDVYGIEPNIPVVHQVVVCQDASARQGTHSTKNRHEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    Q+ GGG  FGP P      +  K+  LA+R  LS K   
Sbjct: 61  GVKPYRQKGTGRARQGSIRAGQWTGGGVIFGPTPRSHARRINNKMVKLAMRSVLSGKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++++++D+L   +  TK      + L +    + +     D N  L+ RN+P +++  V 
Sbjct: 121 SELVLVDSLEFAQPSTKQAKAALQNLGIEGKRVTVIVPDDDVNTYLSFRNLPKVSIFGVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +    ++    LV+S    + L +  
Sbjct: 181 EVTTRFLIDNGALVMSADVAKQLGEVL 207


>gi|220917122|ref|YP_002492426.1| ribosomal protein L4/L1e [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254803709|sp|B8J861|RL4_ANAD2 RecName: Full=50S ribosomal protein L4
 gi|219954976|gb|ACL65360.1| ribosomal protein L4/L1e [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 206

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +L  +  G + +++ +FA +  + +   V++ +    R G    K RS V+  
Sbjct: 1   MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S   SQ+ GGGKA GP P    + +PKKVR  ALR AL+ +   
Sbjct: 61  GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++        KT        AL  +   ++     +     + RN+   + L V+G
Sbjct: 121 QKLVIVQEWKPGAPKTAAAAKVLSALG-AKKALVVDDAANLALAKSVRNLHGSDFLAVEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR   LVL+    + LE   
Sbjct: 180 LNVYDILRHDALVLTADTAKKLEASL 205


>gi|311109611|ref|YP_003982464.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans A8]
 gi|310764300|gb|ADP19749.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans A8]
          Length = 206

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+     S  + IF     + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MDLKLLNDQGQAAATFSAPDTIFGRDFNEALIHQIVVAFQANARSGNRAQKDRTEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R  LS     
Sbjct: 61  KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+++      KTK    + ++L   ++++I    +D N  LA RN+P++ ++  + 
Sbjct: 121 DRIAVVESFDLASPKTKDAAAKLKSLG-LDSVLIITDSVDENVYLATRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI  LE+  
Sbjct: 180 ADPLSLVHYKKVLITKPAIAQLEEML 205


>gi|255690004|ref|ZP_05413679.1| ribosomal protein L4/L1 family protein [Bacteroides finegoldii DSM
           17565]
 gi|260624612|gb|EEX47483.1| ribosomal protein L4/L1 family protein [Bacteroides finegoldii DSM
           17565]
          Length = 208

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYFFKLNKKVKTLARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   +        L++   + ++N  L+ARNI   N+  + 
Sbjct: 121 NAIVVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNIEGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    ++L++++++A+++  
Sbjct: 181 GLNTYRVLNAGVVMLTENSLKAIDNIL 207


>gi|327479324|gb|AEA82634.1| 50S ribosomal protein L4 [Pseudomonas stutzeri DSM 4166]
          Length = 200

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 104/200 (52%), Gaps = 3/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            N++G     I VS+  F  +  + ++ + +       R G  + K RS+V+  G + + 
Sbjct: 3   LNVNGAQA--IEVSDRTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGGKRPWR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++   S  ++V+
Sbjct: 61  QKGTGRARAGTTRGPIWRGGGVTFAARPQNHEQKLNKKMYRAALRSILAELVRSERLVVV 120

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           ++      KTK L ++   + LS+  +I    +D+N  LAARN+P++++  VQG +   +
Sbjct: 121 EDFAVDVPKTKALASKLNGMGLSDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGSDPVSL 179

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA++  E+  
Sbjct: 180 IAYDKVLITVSAVKKFEELL 199


>gi|237747366|ref|ZP_04577846.1| large subunit ribosomal protein L4 [Oxalobacter formigenes HOxBLS]
 gi|229378717|gb|EEO28808.1| large subunit ribosomal protein L4 [Oxalobacter formigenes HOxBLS]
          Length = 206

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N   +  G +   + IF  +  + ++ +++       R G  + K R  VA+T 
Sbjct: 1   MELKLLNGSDQAVGKVEAPDTIFGREYNEALIHQIVVAFQANARTGDRQQKSRETVAHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+AF   P     H + KK+    +   LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRAFPNTPDENFSHKVNKKMYRAGVCSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + VI+ L     KTK L  + +     N++++     D N  LA+RN+PN+ ++    
Sbjct: 121 DRLTVIEGLAIDAPKTKMLAQKLKGFG-FNSVLVITDVFDENLYLASRNLPNVLVVEPHQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++    ++++K+A+  +E+  
Sbjct: 180 ADPVSLVHFKDVLITKAALGKIEEML 205


>gi|84394647|ref|ZP_00993339.1| 50S ribosomal protein L4 [Vibrio splendidus 12B01]
 gi|86148880|ref|ZP_01067132.1| 50S ribosomal protein L4 [Vibrio sp. MED222]
 gi|218710748|ref|YP_002418369.1| 50S ribosomal protein L4 [Vibrio splendidus LGP32]
 gi|254803764|sp|B7VLF6|RL4_VIBSL RecName: Full=50S ribosomal protein L4
 gi|84374729|gb|EAP91684.1| 50S ribosomal protein L4 [Vibrio splendidus 12B01]
 gi|85833332|gb|EAQ51538.1| 50S ribosomal protein L4 [Vibrio sp. MED222]
 gi|218323767|emb|CAV20124.1| Ribosomal protein L4 [Vibrio splendidus LGP32]
          Length = 200

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F     + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELIRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++ LI+ G ++D N  LAARN+  ++   V G+
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGV 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVLMTADAVKQVEEML 199


>gi|254492322|ref|ZP_05105495.1| ribosomal protein L4/L1 family [Methylophaga thiooxidans DMS010]
 gi|224462494|gb|EEF78770.1| ribosomal protein L4/L1 family [Methylophaga thiooxydans DMS010]
          Length = 205

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L +++ DG+  G ISVS+ +F  +  + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MDLQLQSFDGKKAGNISVSDALFDREFNESLVHQVVTSYLAGARSGTHAQKTRSEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKG+GRAR  +     +R GG  F          + +K+   A+   LS+   ++
Sbjct: 61  RKPFAQKGSGRARAGTIRSPLWRSGGTTFAAKNRDYSKKVNRKMYRSAIASILSELRRND 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D +     KTK L+ + ++L LSNA +I       N  LA+RN+ +I       I
Sbjct: 121 ALIVVDKVELDTPKTKDLLAKAQSLGLSNA-LIVTENAAGNLALASRNLYDIAATDAAHI 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N   +LR  K+V+S+ ++  LE+  
Sbjct: 180 NPVALLRFEKVVMSEDSVRKLEESL 204


>gi|320108395|ref|YP_004183985.1| 50S ribosomal protein L4/L1e [Terriglobus saanensis SP1PR4]
 gi|319926916|gb|ADV83991.1| ribosomal protein L4/L1e [Terriglobus saanensis SP1PR4]
          Length = 226

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 2/209 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N +GE  G + +++++F ++  + +L   ++      R G + +K +  V+  
Sbjct: 1   MAKINVVNFNGERVGEVELADEVFGVEVNEALLWEAVKHYRASLRQGTAATKNKKLVSGA 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QKGTGRAR  S     +RGGG   GP P    +  PKK    ALR AL+ K   
Sbjct: 61  GKKLWKQKGTGRARVGSIRSPIWRGGGTVHGPQPRSYDYQFPKKKLMGALRSALASKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPV 178
             + V+++L + E KTK        LD     ++   G +L  N    +RN+  + L+  
Sbjct: 121 GKLTVVESLAAAEPKTKLYRQALDKLDAKKTALLVESGHKLTENAFFGSRNLDGVELVLS 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207
             ++ YD+LR    + SK A EA+++  K
Sbjct: 181 SEVHPYDLLRYEHAIFSKDAFEAIQEMLK 209


>gi|284052649|ref|ZP_06382859.1| 50S ribosomal protein L4 [Arthrospira platensis str. Paraca]
 gi|291567785|dbj|BAI90057.1| 50S ribosomal protein L4 [Arthrospira platensis NIES-39]
          Length = 210

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++  +RN DGE+ G  ++   +   +    I+ R L  Q    R G + +K RSEV   
Sbjct: 1   MVDCIIRNWDGEEVGQTTLELKVAKEENASHIVHRALVRQQAAARQGTASTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTAFQSRVDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK L           S  +++   +   N  L+ RN+  + +   
Sbjct: 121 IVVVEEFVTQLPRPKTKDLTAALERWGVSSSAKVLLVLPEKQENVYLSGRNVEKMRICLA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD+L   K+V + +A+  +++ +
Sbjct: 181 DSLNVYDVLAADKIVTTANALAKIQEVY 208


>gi|300865403|ref|ZP_07110208.1| 50S ribosomal protein L4 [Oscillatoria sp. PCC 6506]
 gi|300336586|emb|CBN55358.1| 50S ribosomal protein L4 [Oscillatoria sp. PCC 6506]
          Length = 211

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 3/209 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   VRN  GE+ G  ++   +   +    I+ R LR Q    R G + +K R+EV   
Sbjct: 1   MVNCVVRNWQGEEVGETTLELRVAKEENASHIVHRALRRQMVNARQGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG +FGP P      + KK R LALR AL  +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVSFGPKPRDFDIKMNKKERRLALRTALQSRAAE 120

Query: 121 NDIMVIDNLV-SKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
           + I+V D        KTK L+T       +  + +++   +   N  L+ RN+P + ++ 
Sbjct: 121 DFIVVEDFSEQIARPKTKELITALARWGANPESRILLILPEKQENIYLSGRNVPTLKIIL 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
              +N+YDIL   K+V + +AI  +++ +
Sbjct: 181 AGSLNIYDILAADKIVTTATAIAKMQEVY 209


>gi|224118096|ref|XP_002331557.1| predicted protein [Populus trichocarpa]
 gi|222873781|gb|EEF10912.1| predicted protein [Populus trichocarpa]
          Length = 285

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 6/208 (2%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   EDKG++ ++ D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 71  IPVTNFHNEDKGLMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 130

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS-----DKF 118
            Y QKGTGRARH +    QFRGG    GP P      L KKVR L L+ AL+      +F
Sbjct: 131 PYRQKGTGRARHGTLRGPQFRGGAVMHGPKPRSHAFKLNKKVRRLGLKIALTAPIILIEF 190

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLP 177
            +  ++V ++L     KTK +V     ++ +  L+ +DG  ++   +LA +N+  +NLLP
Sbjct: 191 LNAQLLVFEDLEVPTHKTKNIVNYVIEMENTKKLLVVDGGPINEKLKLATQNLHYVNLLP 250

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205
             G+NVY IL+   LV+S+ A+  + +R
Sbjct: 251 SIGLNVYSILQHDTLVMSRDAVNKIVER 278


>gi|27364214|ref|NP_759742.1| 50S ribosomal protein L4 [Vibrio vulnificus CMCP6]
 gi|37678560|ref|NP_933169.1| 50S ribosomal protein L4 [Vibrio vulnificus YJ016]
 gi|320157600|ref|YP_004189979.1| 50S ribosomal protein L4p (L1e) [Vibrio vulnificus MO6-24/O]
 gi|46577170|sp|Q7MPI7|RL4_VIBVY RecName: Full=50S ribosomal protein L4
 gi|46577257|sp|Q8DE40|RL4_VIBVU RecName: Full=50S ribosomal protein L4
 gi|27360332|gb|AAO09269.1| LSU ribosomal protein L4p (L1e) [Vibrio vulnificus CMCP6]
 gi|37197300|dbj|BAC93140.1| ribosomal protein L4 [Vibrio vulnificus YJ016]
 gi|319932912|gb|ADV87776.1| LSU ribosomal protein L4p (L1e) [Vibrio vulnificus MO6-24/O]
          Length = 200

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V     +    ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMV-----KGAAALTVSEATFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPLWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++ LI+ G ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++  A++ +E+  
Sbjct: 175 DPVSLIAFNKVLMTADAVKQVEEML 199


>gi|330812074|ref|YP_004356536.1| 50S ribosomal protein L4 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380182|gb|AEA71532.1| 50S ribosomal protein L4 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 200

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V +        I VSE  F  +  + ++ + +       R G  + K RS+V+  G
Sbjct: 1   MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +RGGG  F   P      L KK+   A+R  L++   ++
Sbjct: 56  KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +   +  KTK L+ +   + L++  +I    +D+N  LAARN+P++++  VQG 
Sbjct: 116 RLVVVQDFAVEAPKTKDLLNKLNGMGLTDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGS 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ SA++  E+  
Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199


>gi|51473838|ref|YP_067595.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington]
 gi|81610771|sp|Q68W79|RL4_RICTY RecName: Full=50S ribosomal protein L4
 gi|51460150|gb|AAU04113.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington]
          Length = 207

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 122/207 (58%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G I++++DIFA++  +  I+ +V+ WQ  +   G  K+K  SEV+ T
Sbjct: 1   MKTKILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG + GP        LPKKVR L L HALS+K  +
Sbjct: 61  TKKPFKQKGTGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +++I++L  ++ KT  LV         +  IIDG ++D NF LA +NI N  ++P  G
Sbjct: 121 GKLLIINSLKLEKPKTSVLVNLLNKFQGQSFFIIDGNKVDTNFSLATKNIYNTLIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVSFLEERLR 207


>gi|70732881|ref|YP_262649.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf-5]
 gi|109893621|sp|Q4K534|RL4_PSEF5 RecName: Full=50S ribosomal protein L4
 gi|68347180|gb|AAY94786.1| ribosomal protein L4/L1 family [Pseudomonas fluorescens Pf-5]
          Length = 200

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V +        I VSE  F  +  + ++ + +       R G  + K RS+V+  G
Sbjct: 1   MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +RGGG  F   P      L KK+   A+R  L++   ++
Sbjct: 56  KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +   +  KTK L+ +   + L++  +I    +D+N  LAARN+P++++  VQG 
Sbjct: 116 RLVVVQDFAVETPKTKDLLGKLNNMSLTDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGS 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ SA++  E+  
Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199


>gi|183601945|ref|ZP_02963314.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682858|ref|YP_002469241.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190434|ref|YP_002967828.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195840|ref|YP_002969395.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|254803716|sp|B8DW14|RL4_BIFA0 RecName: Full=50S ribosomal protein L4
 gi|183218830|gb|EDT89472.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620508|gb|ACL28665.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248826|gb|ACS45766.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250394|gb|ACS47333.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289178158|gb|ADC85404.1| LSU ribosomal protein L1E [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793421|gb|ADG32956.1| 50S ribosomal protein L4 [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 218

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSE 56
           + L+V + +G++ G +   E +F      ++    ++ +V+  Q    R G    K R  
Sbjct: 4   VTLNVTDNNGKEAGTLEAPEALFGFTAEEVQAHVPLIHQVVVAQRAAARQGTHAVKNRGA 63

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
           V+  G K + QKGTGRAR  S    Q+  GG A GPVP       PKK+++ ALR+ALSD
Sbjct: 64  VSGGGRKPWKQKGTGRARQGSIRAPQWYHGGVAHGPVPRDYSQRTPKKMKAAALRYALSD 123

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +  +  + V+D        TK  +     +   N   +   + + N  L+ RNIP +  +
Sbjct: 124 RANNGRVAVVDFQ-LDAPSTKKAIAALAPVVADNFTTVVLSRDNVNEWLSVRNIPTVYPI 182

Query: 177 PVQGINVYDILRCSKLVLSKSAIEAL 202
               +N YD++    +V SK  +EA 
Sbjct: 183 FADQLNTYDVITAQYVVFSKDGLEAF 208


>gi|281423838|ref|ZP_06254751.1| ribosomal protein L4/L1 family protein [Prevotella oris F0302]
 gi|299141148|ref|ZP_07034285.1| ribosomal protein L4/L1 family protein [Prevotella oris C735]
 gi|281402065|gb|EFB32896.1| ribosomal protein L4/L1 family protein [Prevotella oris F0302]
 gi|298577108|gb|EFI48977.1| ribosomal protein L4/L1 family protein [Prevotella oris C735]
          Length = 209

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 114/203 (56%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N++G++ G  ++++E IF ++P   +L   ++     +R G +K+K RSE++ +
Sbjct: 1   MEVSVLNINGQETGRKVNLNEAIFGIEPNDHVLYLDVKQYLAAQRQGTAKTKERSELSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRNYDFKLNKKVKVLARKSALSYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++V++++  +  KTK  V   + + +     ++   ++++N  L+ARNI    ++   
Sbjct: 121 NAVVVVEDINFEAPKTKEFVNFTKNIKVEGKKTLVLLPEVNKNVYLSARNIQGAEVMTAT 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +L    +V+++SA++A+
Sbjct: 181 SLNSYKVLNADVVVIAESALKAI 203


>gi|167620736|ref|ZP_02389367.1| 50S ribosomal protein L4 [Burkholderia thailandensis Bt4]
          Length = 206

 Score =  176 bits (445), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++   ++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNSNGQEGAAVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++++V +  KTK L  +F+A+   +++++    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMG-LDSVLVITDTVDENLYLASRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|15642590|ref|NP_232223.1| 50S ribosomal protein L4 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121729002|ref|ZP_01682005.1| ribosomal protein L4 [Vibrio cholerae V52]
 gi|147673082|ref|YP_001218089.1| 50S ribosomal protein L4 [Vibrio cholerae O395]
 gi|153827401|ref|ZP_01980068.1| ribosomal protein L4 [Vibrio cholerae MZO-2]
 gi|227082712|ref|YP_002811263.1| ribosomal protein L4 [Vibrio cholerae M66-2]
 gi|229507353|ref|ZP_04396858.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae BX 330286]
 gi|229509724|ref|ZP_04399205.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae B33]
 gi|229513518|ref|ZP_04402982.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TMA 21]
 gi|229516848|ref|ZP_04406294.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC9]
 gi|229521661|ref|ZP_04411079.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TM 11079-80]
 gi|229524576|ref|ZP_04413981.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae bv. albensis
           VL426]
 gi|229527475|ref|ZP_04416867.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae 12129(1)]
 gi|229606859|ref|YP_002877507.1| 50S ribosomal protein L4 [Vibrio cholerae MJ-1236]
 gi|254851135|ref|ZP_05240485.1| ribosomal protein L4 [Vibrio cholerae MO10]
 gi|255744436|ref|ZP_05418388.1| LSU ribosomal protein L4p (L1e) [Vibrio cholera CIRS 101]
 gi|258620528|ref|ZP_05715566.1| 50S ribosomal protein L4 [Vibrio mimicus VM573]
 gi|258625741|ref|ZP_05720620.1| 50S ribosomal protein L4 [Vibrio mimicus VM603]
 gi|261211150|ref|ZP_05925439.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC341]
 gi|262166616|ref|ZP_06034353.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus VM223]
 gi|262170154|ref|ZP_06037843.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC27]
 gi|262170468|ref|ZP_06038146.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus MB-451]
 gi|262401882|ref|ZP_06078447.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC586]
 gi|298500581|ref|ZP_07010385.1| LSU ribosomal protein L4/L1 [Vibrio cholerae MAK 757]
 gi|46396660|sp|Q9KNY5|RL4_VIBCH RecName: Full=50S ribosomal protein L4
 gi|172047550|sp|A5F548|RL4_VIBC3 RecName: Full=50S ribosomal protein L4
 gi|254803763|sp|C3LRQ7|RL4_VIBCM RecName: Full=50S ribosomal protein L4
 gi|9657182|gb|AAF95736.1| ribosomal protein L4 [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121628725|gb|EAX61193.1| ribosomal protein L4 [Vibrio cholerae V52]
 gi|146314965|gb|ABQ19504.1| ribosomal protein L4 [Vibrio cholerae O395]
 gi|149738674|gb|EDM53016.1| ribosomal protein L4 [Vibrio cholerae MZO-2]
 gi|227010600|gb|ACP06812.1| ribosomal protein L4 [Vibrio cholerae M66-2]
 gi|227014484|gb|ACP10694.1| ribosomal protein L4 [Vibrio cholerae O395]
 gi|229335107|gb|EEO00592.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae 12129(1)]
 gi|229338157|gb|EEO03174.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae bv. albensis
           VL426]
 gi|229341255|gb|EEO06259.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TM 11079-80]
 gi|229345911|gb|EEO10883.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC9]
 gi|229349395|gb|EEO14351.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae TMA 21]
 gi|229353198|gb|EEO18137.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae B33]
 gi|229354858|gb|EEO19779.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae BX 330286]
 gi|229369514|gb|ACQ59937.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae MJ-1236]
 gi|254846840|gb|EET25254.1| ribosomal protein L4 [Vibrio cholerae MO10]
 gi|255737961|gb|EET93354.1| LSU ribosomal protein L4p (L1e) [Vibrio cholera CIRS 101]
 gi|258581979|gb|EEW06849.1| 50S ribosomal protein L4 [Vibrio mimicus VM603]
 gi|258587407|gb|EEW12118.1| 50S ribosomal protein L4 [Vibrio mimicus VM573]
 gi|260839651|gb|EEX66262.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC341]
 gi|261891544|gb|EEY37530.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus MB-451]
 gi|262021562|gb|EEY40274.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae RC27]
 gi|262026332|gb|EEY45000.1| LSU ribosomal protein L4p (L1e) [Vibrio mimicus VM223]
 gi|262351854|gb|EEZ00985.1| LSU ribosomal protein L4p (L1e) [Vibrio sp. RC586]
 gi|297540750|gb|EFH76807.1| LSU ribosomal protein L4/L1 [Vibrio cholerae MAK 757]
 gi|327485077|gb|AEA79484.1| LSU ribosomal protein L4p (L1e) [Vibrio cholerae LMA3894-4]
          Length = 200

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 110/205 (53%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V     +    ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMV-----KGANALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++N   +  KTK LV + + L+L++ LI+ G ++D N  LAARN+  +++  V GI
Sbjct: 116 RLIVVENFSVEAPKTKALVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDVRDVTGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ +A++ +E+  
Sbjct: 175 DPVSLIAFDKVLMTAAAVKQVEEML 199


>gi|253690182|ref|YP_003019372.1| ribosomal protein L4/L1e [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259491565|sp|C6DG73|RL4_PECCP RecName: Full=50S ribosomal protein L4
 gi|251756760|gb|ACT14836.1| ribosomal protein L4/L1e [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +LD N  LAARN+  +++     I
Sbjct: 117 RLIVVEKFSVEAPKTKLLAQKLKEMALEDVLIITG-ELDENLFLAARNLYKVDVRDAAAI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|167587771|ref|ZP_02380159.1| ribosomal protein L4/L1e [Burkholderia ubonensis Bu]
          Length = 206

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNANGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++++V +  KTK L  +F+A+    +++I    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMG-LESVLIITDTVDENLYLASRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|282899953|ref|ZP_06307914.1| Ribosomal protein L4/L1e [Cylindrospermopsis raciborskii CS-505]
 gi|281195223|gb|EFA70159.1| Ribosomal protein L4/L1e [Cylindrospermopsis raciborskii CS-505]
          Length = 213

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+E +V+N  GE+ G  S    +   +    I+ R L  Q    R G + +K R+EV   
Sbjct: 1   MVESTVKNWQGEEVGQTSFELRVAKEETASHIVHRALVRQMTNSRQGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      L +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNIKLNRKERRLALRTAFVSRRED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-----DLSNALIIDGCQLDRNFQLAARNIPNINL 175
             ++       +  K+K LV             +  ++ +  Q      L+ARN+ NI +
Sbjct: 121 LIVVEEFTDQLQRPKSKELVAALARWGATADQKTLLILSEIGQNTETISLSARNVENIKV 180

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +    +NV+D+L   K+V++ SA+  +++ +
Sbjct: 181 IAADQLNVFDLLHADKIVVTSSALTKIQEVY 211


>gi|114561337|ref|YP_748850.1| 50S ribosomal protein L4 [Shewanella frigidimarina NCIMB 400]
 gi|122301114|sp|Q089Q3|RL4_SHEFN RecName: Full=50S ribosomal protein L4
 gi|114332630|gb|ABI70012.1| LSU ribosomal protein L4P [Shewanella frigidimarina NCIMB 400]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +RGGG  F          + KK+   AL+   S+     
Sbjct: 57  KKPWRQKGTGRARAGSVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  + +A++L +  +I   ++D N  LAARN+  +++  V G+
Sbjct: 117 RLVVVESFGVEAPKTKELKAKLKAMNLEDV-LIVTAEVDENLFLAARNLYKVDVRDVAGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  + ++++  A++ +E+  
Sbjct: 176 DPVSLIAFNTVLVTADAVKQIEEML 200


>gi|292492422|ref|YP_003527861.1| ribosomal protein L4/L1e [Nitrosococcus halophilus Nc4]
 gi|291581017|gb|ADE15474.1| ribosomal protein L4/L1e [Nitrosococcus halophilus Nc4]
          Length = 206

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 2/206 (0%)

Query: 2   IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL+V++L +  + G+I VS+ +FA    + ++ +V+     + R G    K RSEV   
Sbjct: 1   MELAVQSLAENAETGMIQVSDVVFAQYFNEPLIHQVVTAYLAKDRAGTRAQKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  +     +RGGGK F   P      + KK+   A+R  LS+    
Sbjct: 61  GAKPFRQKGTGRARAGTIRSPLWRGGGKVFAAKPRDYSQKVNKKMYRAAMRSILSELARQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V++ +V  E KTK LV    A D   ++++   + + N +L+ARNIP + +     
Sbjct: 121 DRLRVVNEIVFPEPKTKELVKLLSAYD-WRSVLVVVAEDNPNLELSARNIPAVAVGNASN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+  D++R   ++ + +AI   E+  
Sbjct: 180 ISPVDLIRFDGVLATDAAIRRFEESL 205


>gi|157377448|ref|YP_001476048.1| 50S ribosomal protein L4 [Shewanella sediminis HAW-EB3]
 gi|189042886|sp|A8G1E7|RL4_SHESH RecName: Full=50S ribosomal protein L4
 gi|157319822|gb|ABV38920.1| ribosomal protein L4/L1e [Shewanella sediminis HAW-EB3]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F          + KK+   AL+   S+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  +   ++L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVESFSVEAPKTKELKAKLAEMNLEDV-LIVTPEIDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++  A++ +E+  
Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200


>gi|1037104|gb|AAB41511.1| ribosomal protein L4 [Haemophilus influenzae]
 gi|1588630|prf||2209238A ribosomal protein L4
          Length = 200

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGT RAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTARARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + L + +A +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFELDAPKTKVLVQKLKDLAVEDA-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVIVTVDAVKQIEEIL 199


>gi|188535277|ref|YP_001909074.1| 50S ribosomal protein L4 [Erwinia tasmaniensis Et1/99]
 gi|226730663|sp|B2VK63|RL4_ERWT9 RecName: Full=50S ribosomal protein L4
 gi|188030319|emb|CAO98208.1| 50S ribosomal protein L4 [Erwinia tasmaniensis Et1/99]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F          + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKSQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + + + L + LII G +L+ N  LAARN+  +++    GI
Sbjct: 117 RLIVVEQFSLEAPKTKLLAEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|127511093|ref|YP_001092290.1| 50S ribosomal protein L4 [Shewanella loihica PV-4]
 gi|166199863|sp|A3Q983|RL4_SHELP RecName: Full=50S ribosomal protein L4
 gi|126636388|gb|ABO22031.1| LSU ribosomal protein L4P [Shewanella loihica PV-4]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG +F          + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKGPIWRGGGVSFAAKTQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  + + + L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLVVVESFGVEAPKTKELKAKLKDMKLEDV-LIVTPEIDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 176 DPVSLIAFEKVLVTADAVKQIEEML 200


>gi|260914679|ref|ZP_05921145.1| 50S ribosomal protein L4 [Pasteurella dagmatis ATCC 43325]
 gi|260631278|gb|EEX49463.1| 50S ribosomal protein L4 [Pasteurella dagmatis ATCC 43325]
          Length = 200

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D    +  KTK LV + + L L +  +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVDKFEVEAPKTKVLVQKLKELALEDV-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199


>gi|37912951|gb|AAR05283.1| ribosomal protein L4 [uncultured marine gamma proteobacterium
           EB000-45B06]
 gi|40063178|gb|AAR38015.1| ribosomal protein L4/L1 family [uncultured marine bacterium 562]
          Length = 204

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 102/203 (50%), Gaps = 3/203 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ + +        I++S+  F     + ++ + +       R G SK K RSEV   G
Sbjct: 1   MKIELLSSTKNQ--DINISDSAFGKDFNESLVHQAVVSFMAGARQGTSKQKTRSEVRGGG 58

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F   P      + KK+   A+R   S+     
Sbjct: 59  KKPFRQKGTGRARAGTIRSPLWRGGGVTFAATPRDYSKKINKKMYRAAIRSIFSELLRQG 118

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++ I+  V  + KTK +V+        + ++I   +LD N  L+ RNIPN++++ V+ I
Sbjct: 119 RLVAIEKPVLDKPKTKEIVSLLNEFS-LSKVLIIIDELDMNLYLSTRNIPNVDVITVREI 177

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N  ++L+ +K+ ++  A + +E+
Sbjct: 178 NPVNLLKANKVAVTADAFKQIEE 200


>gi|34541540|ref|NP_906019.1| 50S ribosomal protein L4 [Porphyromonas gingivalis W83]
 gi|46577171|sp|Q7MTL4|RL4_PORGI RecName: Full=50S ribosomal protein L4
 gi|34397857|gb|AAQ66918.1| ribosomal protein L4 [Porphyromonas gingivalis W83]
          Length = 209

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELSV N+ GED G  + + + IFA++P    +   ++     +R G  K+K RSE++ +
Sbjct: 1   MELSVYNIKGEDTGKKVVLDDSIFAIEPNDHAIYLDVKQYMANQRQGTHKAKERSELSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G AR    +     GG + FGP P      L KK+++LA R ALS K  +
Sbjct: 61  TRKLIRQKGSGGARRGDINSPLLSGGARVFGPRPRNYSFKLNKKLKALARRSALSYKAKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTR-FRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+++      KTK               ++    ++++N  L+ARN+PN NL+   
Sbjct: 121 NEIIVVEDFNFDAPKTKAFKAISAALKVGEKKVLYVLPEVNKNVYLSARNLPNTNLILAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            IN Y +L    LVL++ ++  + + FK
Sbjct: 181 LINTYTVLASKNLVLTERSVAVVNELFK 208


>gi|104779756|ref|YP_606254.1| 50S ribosomal protein L4 [Pseudomonas entomophila L48]
 gi|166199846|sp|Q1IFW5|RL4_PSEE4 RecName: Full=50S ribosomal protein L4
 gi|95108743|emb|CAK13437.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Pseudomonas entomophila L48]
          Length = 200

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V +        I VSE  F  +  + ++ + +       R G  + K RS+VA  G
Sbjct: 1   MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGTKQQKTRSDVAGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++   S+
Sbjct: 56  KRPWRQKGTGRARAGTTRGPIWRGGGVTFAARPQDHSQKLNKKMYRAALRSILAELVRSD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +   +  KTK L+ +   + L++  +I    +D+N  LAARN+P++++  VQG 
Sbjct: 116 RLVVVQDFAVEAPKTKDLLNKLNGMGLNDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGS 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ SA++  E+  
Sbjct: 175 DPVSLIAYEKVLITVSAVKKFEELL 199


>gi|331703715|ref|YP_004400402.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|256384085|gb|ACU78655.1| ribosomal protein L4/L1 family [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256384917|gb|ACU79486.1| ribosomal protein L4/L1 family [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455249|gb|ADH21484.1| ribosomal protein L4/L1 family [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|328802270|emb|CBW54424.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 208

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V ++ G +   I++++ ++ ++P Q  +   +  Q    R G  K K R+EV+  G
Sbjct: 1   MKLQVLDIKGNEVKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  S    Q++GGG  FGP P I     + KKVR+LA R  LS K   
Sbjct: 61  RKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++++D     +  TK +V   +         +I   + +     ++ NI  +  +   
Sbjct: 121 NNLVIVDKFEFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+D+L  +KL++++ A  A+E+ +
Sbjct: 181 QLNVFDLLNATKLLITEEAAIAVEEVY 207


>gi|26987196|ref|NP_742621.1| 50S ribosomal protein L4 [Pseudomonas putida KT2440]
 gi|148545740|ref|YP_001265842.1| 50S ribosomal protein L4 [Pseudomonas putida F1]
 gi|167031501|ref|YP_001666732.1| 50S ribosomal protein L4 [Pseudomonas putida GB-1]
 gi|170723905|ref|YP_001751593.1| 50S ribosomal protein L4 [Pseudomonas putida W619]
 gi|325272045|ref|ZP_08138486.1| 50S ribosomal protein L4 [Pseudomonas sp. TJI-51]
 gi|46577244|sp|Q88QN4|RL4_PSEPK RecName: Full=50S ribosomal protein L4
 gi|166199848|sp|A5VXP8|RL4_PSEP1 RecName: Full=50S ribosomal protein L4
 gi|189042880|sp|B0KK68|RL4_PSEPG RecName: Full=50S ribosomal protein L4
 gi|226730710|sp|B1JDW3|RL4_PSEPW RecName: Full=50S ribosomal protein L4
 gi|24981834|gb|AAN66085.1|AE016238_3 ribosomal protein L4 [Pseudomonas putida KT2440]
 gi|148509798|gb|ABQ76658.1| LSU ribosomal protein L4P [Pseudomonas putida F1]
 gi|166857989|gb|ABY96396.1| ribosomal protein L4/L1e [Pseudomonas putida GB-1]
 gi|169761908|gb|ACA75224.1| ribosomal protein L4/L1e [Pseudomonas putida W619]
 gi|313496820|gb|ADR58186.1| RplD [Pseudomonas putida BIRD-1]
 gi|324102822|gb|EGC00228.1| 50S ribosomal protein L4 [Pseudomonas sp. TJI-51]
          Length = 200

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V +        I VSE  F  +  + ++ + +       R G  + K RS+VA  G
Sbjct: 1   MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGTKQQKTRSDVAGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++   S+
Sbjct: 56  KRPWRQKGTGRARAGTTRGPIWRGGGVTFAARPQDHSQKLNKKMYRAALRSILAELVRSD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +   +  KTK L+ +   + LS+  +I    +D+N  LAARN+P++++  VQG 
Sbjct: 116 RLVVVQDFAVEAPKTKDLLNKLNGMGLSDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGS 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ SA++  E+  
Sbjct: 175 DPVSLIAYEKVLITVSAVKKFEELL 199


>gi|261493008|ref|ZP_05989550.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495172|ref|ZP_05991635.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309148|gb|EEY10388.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311352|gb|EEY12513.1| ribosomal protein L4 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 200

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK L  + + + L++A +I    +D N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFEIDAPKTKVLAQKLKDMALNDA-LIITANVDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199


>gi|212634830|ref|YP_002311355.1| 50S ribosomal protein L4 [Shewanella piezotolerans WP3]
 gi|226730724|sp|B8CND4|RL4_SHEPW RecName: Full=50S ribosomal protein L4
 gi|212556314|gb|ACJ28768.1| Ribosomal protein L4/L1e [Shewanella piezotolerans WP3]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVVGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F          + KK+   AL+   S+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  +   + L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLVVVESFGVEAPKTKELKAKLNEMQLEDV-LIVTPEVDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++  AI+ +E+  
Sbjct: 176 DPVSLIAFNKVLVTAEAIKQIEEML 200


>gi|171060668|ref|YP_001793017.1| 50S ribosomal protein L4 [Leptothrix cholodnii SP-6]
 gi|226730682|sp|B1Y8I6|RL4_LEPCP RecName: Full=50S ribosomal protein L4
 gi|170778113|gb|ACB36252.1| ribosomal protein L4/L1e [Leptothrix cholodnii SP-6]
          Length = 206

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 102/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    +   + +FA    + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNEQGQATAKVDAPDTVFARDYNESLIHQIVVAYQANARQGTRAQKDREQVHHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +    S     
Sbjct: 61  KKPFRQKGTGRARAGMTSSPLWRGGGRIFPNSPDENFTQKVNKKMYRAGMASIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VID++     KTK L  + +A++L +  ++   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVIDSITLDAPKTKLLAAKLKAMNLDHV-LVIADEVDENLFLASRNLANVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+AI+ L++ F
Sbjct: 180 ADPLSLVFYKKILVTKAAIDKLQEMF 205


>gi|282898356|ref|ZP_06306347.1| Ribosomal protein L4/L1e [Raphidiopsis brookii D9]
 gi|281196887|gb|EFA71792.1| Ribosomal protein L4/L1e [Raphidiopsis brookii D9]
          Length = 213

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 5/211 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+E  V+N  GE+ G  S    I   +    I+ R L  Q    R G + +K R+EV   
Sbjct: 1   MVESIVKNWQGEEVGQTSFELRIAKEETASHIVHRALVRQMTNSRQGTASTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      L +K R LALR A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFNIKLNRKERRLALRTAFVSRRED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-----DLSNALIIDGCQLDRNFQLAARNIPNINL 175
             ++       +  K+K LV             +  ++ +  Q      L+ARN+ NI +
Sbjct: 121 LIVVEEFTDQLQRPKSKELVAALARWGATAEQKTLLILSEIGQSTETISLSARNVENIKV 180

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +    +NV+D+L   K+V++ SA+  +++ +
Sbjct: 181 IAADQLNVFDLLHADKIVVTSSALNKIQEVY 211


>gi|163752595|ref|ZP_02159774.1| 50S ribosomal protein L4 [Shewanella benthica KT99]
 gi|161327507|gb|EDP98714.1| 50S ribosomal protein L4 [Shewanella benthica KT99]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F          + KK+   AL+   S+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  +  A+DL +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVESFTVEAPKTKELKAKLAAMDLEDV-LIVTPEIDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++  A++ +E+  
Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200


>gi|220935491|ref|YP_002514390.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. HL-EbGR7]
 gi|254803762|sp|B8GV57|RL4_THISH RecName: Full=50S ribosomal protein L4
 gi|219996801|gb|ACL73403.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. HL-EbGR7]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V++     K  + VS+  F  +  + ++ + +       R G    KGRS+V+  G
Sbjct: 1   MKLQVQD----TKKDLEVSDQTFGREFNEDLVHQAVVAYMAGGRAGTKAQKGRSDVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKG+GRAR  +     +R GGK F   P      L +K+   A+R   S+     
Sbjct: 57  AKPWKQKGSGRARAGTIRSPIWRTGGKVFAARPRDYSQKLNRKMYRAAMRSIFSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+      KTK L+ +   L +SNA +I   Q D N  L+ARN+P +++  V G+
Sbjct: 117 RLVVVDSFAVDAPKTKGLLEKLGGLGVSNA-LIVTDQADANLYLSARNLPGVDVSEVGGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 176 DPVSLVGFEKVLITVPALKQVEEWL 200


>gi|170729008|ref|YP_001763034.1| 50S ribosomal protein L4 [Shewanella woodyi ATCC 51908]
 gi|226730725|sp|B1KMY2|RL4_SHEWM RecName: Full=50S ribosomal protein L4
 gi|169814355|gb|ACA88939.1| ribosomal protein L4/L1e [Shewanella woodyi ATCC 51908]
          Length = 201

 Score =  175 bits (444), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVVGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F          + KK+   AL+   S+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKAQDHSQKVNKKMYRGALKSIFSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  +   ++L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVESFGVEAPKTKELKAKLAEMNLEDV-LIVTPEIDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++  A++ +E+  
Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200


>gi|53720820|ref|YP_109806.1| 50S ribosomal protein L4 [Burkholderia pseudomallei K96243]
 gi|53723853|ref|YP_104165.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 23344]
 gi|67639131|ref|ZP_00438030.1| 50S ribosomal protein L4 [Burkholderia mallei GB8 horse 4]
 gi|76809795|ref|YP_335139.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710b]
 gi|83721290|ref|YP_443571.1| 50S ribosomal protein L4 [Burkholderia thailandensis E264]
 gi|121599603|ref|YP_994455.1| 50S ribosomal protein L4 [Burkholderia mallei SAVP1]
 gi|124385301|ref|YP_001027896.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10229]
 gi|126439851|ref|YP_001060749.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 668]
 gi|126448779|ref|YP_001082991.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10247]
 gi|126454667|ref|YP_001068033.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106a]
 gi|134283113|ref|ZP_01769814.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 305]
 gi|167001698|ref|ZP_02267490.1| 50S ribosomal protein L4 [Burkholderia mallei PRL-20]
 gi|167582622|ref|ZP_02375496.1| 50S ribosomal protein L4 [Burkholderia thailandensis TXDOH]
 gi|167721576|ref|ZP_02404812.1| 50S ribosomal protein L4 [Burkholderia pseudomallei DM98]
 gi|167740550|ref|ZP_02413324.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 14]
 gi|167817755|ref|ZP_02449435.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 91]
 gi|167826152|ref|ZP_02457623.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 9]
 gi|167847664|ref|ZP_02473172.1| 50S ribosomal protein L4 [Burkholderia pseudomallei B7210]
 gi|167896236|ref|ZP_02483638.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 7894]
 gi|167904618|ref|ZP_02491823.1| 50S ribosomal protein L4 [Burkholderia pseudomallei NCTC 13177]
 gi|167912883|ref|ZP_02499974.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 112]
 gi|167920843|ref|ZP_02507934.1| 50S ribosomal protein L4 [Burkholderia pseudomallei BCC215]
 gi|217424680|ref|ZP_03456177.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 576]
 gi|237814144|ref|YP_002898595.1| ribosomal protein, L4/L1 family [Burkholderia pseudomallei MSHR346]
 gi|242316920|ref|ZP_04815936.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106b]
 gi|254175000|ref|ZP_04881661.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 10399]
 gi|254180340|ref|ZP_04886938.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1655]
 gi|254190303|ref|ZP_04896811.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pasteur 52237]
 gi|254198538|ref|ZP_04904959.1| 50S ribosomal protein L4 [Burkholderia pseudomallei S13]
 gi|254201238|ref|ZP_04907602.1| 50S ribosomal protein L4 [Burkholderia mallei FMH]
 gi|254206579|ref|ZP_04912930.1| 50S ribosomal protein L4 [Burkholderia mallei JHU]
 gi|254262086|ref|ZP_04953140.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710a]
 gi|254300579|ref|ZP_04968024.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 406e]
 gi|254357117|ref|ZP_04973391.1| 50S ribosomal protein L4 [Burkholderia mallei 2002721280]
 gi|257137646|ref|ZP_05585908.1| 50S ribosomal protein L4 [Burkholderia thailandensis E264]
 gi|81604183|sp|Q62GK6|RL4_BURMA RecName: Full=50S ribosomal protein L4
 gi|81607670|sp|Q63Q12|RL4_BURPS RecName: Full=50S ribosomal protein L4
 gi|109893580|sp|Q3JMR4|RL4_BURP1 RecName: Full=50S ribosomal protein L4
 gi|109893582|sp|Q2SU28|RL4_BURTA RecName: Full=50S ribosomal protein L4
 gi|166234642|sp|A3MRV5|RL4_BURM7 RecName: Full=50S ribosomal protein L4
 gi|166234643|sp|A2S7H7|RL4_BURM9 RecName: Full=50S ribosomal protein L4
 gi|166234644|sp|A1V8A2|RL4_BURMS RecName: Full=50S ribosomal protein L4
 gi|166234645|sp|A3P0B2|RL4_BURP0 RecName: Full=50S ribosomal protein L4
 gi|166234646|sp|A3NEH8|RL4_BURP6 RecName: Full=50S ribosomal protein L4
 gi|52211234|emb|CAH37223.1| 50S ribosomal protein L4 [Burkholderia pseudomallei K96243]
 gi|52427276|gb|AAU47869.1| ribosomal protein L4 [Burkholderia mallei ATCC 23344]
 gi|76579248|gb|ABA48723.1| ribosomal protein L4/L1 family [Burkholderia pseudomallei 1710b]
 gi|83655115|gb|ABC39178.1| ribosomal protein L4/L1 family [Burkholderia thailandensis E264]
 gi|121228413|gb|ABM50931.1| 50S ribosomal protein L4 [Burkholderia mallei SAVP1]
 gi|124293321|gb|ABN02590.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10229]
 gi|126219344|gb|ABN82850.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 668]
 gi|126228309|gb|ABN91849.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106a]
 gi|126241649|gb|ABO04742.1| 50S ribosomal protein L4 [Burkholderia mallei NCTC 10247]
 gi|134245308|gb|EBA45401.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 305]
 gi|147747132|gb|EDK54208.1| 50S ribosomal protein L4 [Burkholderia mallei FMH]
 gi|147752121|gb|EDK59187.1| 50S ribosomal protein L4 [Burkholderia mallei JHU]
 gi|148026181|gb|EDK84266.1| 50S ribosomal protein L4 [Burkholderia mallei 2002721280]
 gi|157810619|gb|EDO87789.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 406e]
 gi|157937979|gb|EDO93649.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pasteur 52237]
 gi|160696045|gb|EDP86015.1| 50S ribosomal protein L4 [Burkholderia mallei ATCC 10399]
 gi|169655278|gb|EDS87971.1| 50S ribosomal protein L4 [Burkholderia pseudomallei S13]
 gi|184210879|gb|EDU07922.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1655]
 gi|217392136|gb|EEC32161.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 576]
 gi|237505978|gb|ACQ98296.1| ribosomal protein, L4/L1 family [Burkholderia pseudomallei MSHR346]
 gi|238519675|gb|EEP83144.1| 50S ribosomal protein L4 [Burkholderia mallei GB8 horse 4]
 gi|242140159|gb|EES26561.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1106b]
 gi|243062595|gb|EES44781.1| 50S ribosomal protein L4 [Burkholderia mallei PRL-20]
 gi|254220775|gb|EET10159.1| 50S ribosomal protein L4 [Burkholderia pseudomallei 1710a]
          Length = 206

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++++V +  KTK L  +F+A+   +++++    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMG-LDSVLVITDTVDENLYLASRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|298531084|ref|ZP_07018485.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509107|gb|EFI33012.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1]
          Length = 206

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   V + D ++ G I + E++F++  +  ++ + +R      R G    K R+ ++  
Sbjct: 1   MLSAKVYSQDNQEVGEIDLQENVFSVSVKPELMHQAVRAHRAAVRSGTVGVKNRALISGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     +RGG    GP        L KKVR LAL+ ALS K+  
Sbjct: 61  GRKPWRQKGTGRARAGTGRSPLWRGGAVIHGPKARDYSIKLNKKVRRLALKMALSTKYAQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + ++DNL     +TK  V+  +        +I   +   N +L+ARN+P + ++    
Sbjct: 121 DKLQILDNLDLSRIRTKDFVS-IKNNLGLKKPLIVTAEKSNNLELSARNVPGVEVITQDS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           INVY++L+  +LV+ K A+E L++R 
Sbjct: 180 INVYEVLKHQELVMDKQAVEKLQERL 205


>gi|113869430|ref|YP_727919.1| 50S ribosomal protein L4 [Ralstonia eutropha H16]
 gi|123032610|sp|Q0K620|RL4_RALEH RecName: Full=50S ribosomal protein L4
 gi|113528206|emb|CAJ94551.1| LSU ribosomal protein L4 [Ralstonia eutropha H16]
          Length = 206

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   +G+    +  S ++F     + ++ +++       R G  K K R EV +T 
Sbjct: 1   MELKLLQDNGQIGAGVDASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R   S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFTQKVNKKMFRAGMRSIYSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D       KTK L  +F+A+   ++++I    LD N  LA+RN+P++ ++  + 
Sbjct: 121 GRINVVDGFTVDAPKTKLLADKFKAMG-LDSVLIITDSLDENLYLASRNLPHVAVVEPRQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++   K++++K+A+  +E+  K
Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206


>gi|257454048|ref|ZP_05619322.1| ribosomal protein, L4/L1 family [Enhydrobacter aerosaccus SK60]
 gi|257448526|gb|EEV23495.1| ribosomal protein, L4/L1 family [Enhydrobacter aerosaccus SK60]
          Length = 200

 Score =  175 bits (443), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 1/199 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL+      + +S+  F  +  + ++ +V+       R G    K R EV+  G K + Q
Sbjct: 2   NLNTVTGSAVELSDVAFGREFNEALVHQVVTAYLAGGRQGSRAQKTRGEVSGGGKKPWRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S     + GGG+AF   P      + +K+   A++  L++    + ++++D
Sbjct: 62  KGTGRARAGSIRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQDRLVLVD 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
           ++     KTK L+ + +    +   +I   ++D N  LAARNIP +++L    ++   ++
Sbjct: 122 DISISAPKTKELIAKLKD-LNAPKALIVTNEVDENLYLAARNIPYVSVLGSTEVDPVSLI 180

Query: 188 RCSKLVLSKSAIEALEDRF 206
              K+++S +A + +E   
Sbjct: 181 AFDKVIMSVAAAKEIEGVL 199


>gi|317125871|ref|YP_004099983.1| 50S ribosomal protein L4P [Intrasporangium calvum DSM 43043]
 gi|315589959|gb|ADU49256.1| LSU ribosomal protein L4P [Intrasporangium calvum DSM 43043]
          Length = 212

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 1/191 (0%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
                ++  DIF ++    ++ +V+  Q    R G   +K R EV   G K Y QKGTGR
Sbjct: 5   ATKTPNLPADIFDVQTNIPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGRKPYRQKGTGR 64

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV-S 131
           AR  S    QF GGG   GP P       PKK++  ALR ALSD+   + I V+D++V  
Sbjct: 65  ARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKVAALRGALSDRARFDRIHVVDSIVGG 124

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                K  +     L     L++   + D     + RN+PN+++L    +N YD+L    
Sbjct: 125 DAPSAKAALALLAGLTDRPNLLVVIERGDEVAFKSVRNLPNVHVLVADQLNTYDVLCADD 184

Query: 192 LVLSKSAIEAL 202
           +V +++A++A 
Sbjct: 185 IVFTQAALDAF 195


>gi|167564416|ref|ZP_02357332.1| 50S ribosomal protein L4 [Burkholderia oklahomensis EO147]
 gi|167571562|ref|ZP_02364436.1| 50S ribosomal protein L4 [Burkholderia oklahomensis C6786]
 gi|167838211|ref|ZP_02465070.1| 50S ribosomal protein L4 [Burkholderia thailandensis MSMB43]
          Length = 206

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++++V +  KTK L  +F+A+    ++++    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMG-LESVLVITDTVDENLYLASRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|294786412|ref|ZP_06751666.1| ribosomal protein L4/L1 family protein [Parascardovia denticolens
           F0305]
 gi|315225974|ref|ZP_07867762.1| 50S ribosomal protein L4 [Parascardovia denticolens DSM 10105]
 gi|294485245|gb|EFG32879.1| ribosomal protein L4/L1 family protein [Parascardovia denticolens
           F0305]
 gi|315120106|gb|EFT83238.1| 50S ribosomal protein L4 [Parascardovia denticolens DSM 10105]
          Length = 219

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 7/209 (3%)

Query: 1   MIEL--SVRNLDGEDKGVISVSEDIFALK-----PQQGILARVLRWQSWRKRIGCSKSKG 53
           M  +   V + +G+  G +    ++F +          ++ +V+  Q    R G    K 
Sbjct: 1   MANISLKVTSANGKASGQVEAPSEVFGIAQEDVVKHVPLVHQVVIAQLAAARQGTHAVKN 60

Query: 54  RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113
           R+ ++  G K + QKGTGRAR  S    QF GG    GPVP       P+K++  AL + 
Sbjct: 61  RARISGGGKKPWKQKGTGRARQGSIRAPQFAGGAVVHGPVPRDYSQRTPRKMKLAALNYV 120

Query: 114 LSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173
           LSD+F +  + V+D  +S +  TK  V   + +  S    I   + + N  L+ RN+P +
Sbjct: 121 LSDRFNAGRVHVVDFAISDKPSTKAAVAALQPVVESRFATIVVSRDNINEWLSVRNLPTV 180

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEAL 202
           ++L    +N YD++    +V +K  +EA 
Sbjct: 181 HVLFADQLNTYDVVTAEDVVFTKEGLEAF 209


>gi|254430668|ref|ZP_05044371.1| ribosomal protein L4/L1 family [Cyanobium sp. PCC 7001]
 gi|197625121|gb|EDY37680.1| ribosomal protein L4/L1 family [Cyanobium sp. PCC 7001]
          Length = 211

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    +R+  G++ G   +   +        ++ R +  Q    R G + +  R+EVA  
Sbjct: 1   MAHCVIRDWQGKEAGKADLDLKVAKESSATDLVHRAVVRQLAHARQGTASTLTRAEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPRSYALAMNRKERRLALRTALMSRVED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK +        ++    +++         + + RN+  + L+  
Sbjct: 121 ITVVKGFGAGLDTPKTKEITAALTRLGIEAGAKVLVILDNASEAVRKSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  +KLV+S+ A+  +++ +
Sbjct: 181 DQLNVFDLLHANKLVVSEEALAKIQEVY 208


>gi|15603279|ref|NP_246353.1| 50S ribosomal protein L4 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|46577290|sp|Q9CL33|RL4_PASMU RecName: Full=50S ribosomal protein L4
 gi|12721789|gb|AAK03498.1| RpL4 [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 200

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + L L +  +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLIVVEKFEVEAPKTKVLVQKLKELALEDV-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199


>gi|91791540|ref|YP_561191.1| 50S ribosomal protein L4 [Shewanella denitrificans OS217]
 gi|120596990|ref|YP_961564.1| 50S ribosomal protein L4 [Shewanella sp. W3-18-1]
 gi|126176354|ref|YP_001052503.1| 50S ribosomal protein L4 [Shewanella baltica OS155]
 gi|146294840|ref|YP_001185264.1| 50S ribosomal protein L4 [Shewanella putrefaciens CN-32]
 gi|152998750|ref|YP_001364431.1| 50S ribosomal protein L4 [Shewanella baltica OS185]
 gi|160873327|ref|YP_001552643.1| 50S ribosomal protein L4 [Shewanella baltica OS195]
 gi|217975200|ref|YP_002359951.1| 50S ribosomal protein L4 [Shewanella baltica OS223]
 gi|304412766|ref|ZP_07394368.1| ribosomal protein L4/L1e [Shewanella baltica OS183]
 gi|307307430|ref|ZP_07587165.1| ribosomal protein L4/L1e [Shewanella baltica BA175]
 gi|123357238|sp|Q12SV8|RL4_SHEDO RecName: Full=50S ribosomal protein L4
 gi|166199861|sp|A3DA71|RL4_SHEB5 RecName: Full=50S ribosomal protein L4
 gi|166199862|sp|A6WHS9|RL4_SHEB8 RecName: Full=50S ribosomal protein L4
 gi|166199864|sp|A4YBY2|RL4_SHEPC RecName: Full=50S ribosomal protein L4
 gi|166199908|sp|A1REB5|RL4_SHESW RecName: Full=50S ribosomal protein L4
 gi|189042883|sp|A9KWA3|RL4_SHEB9 RecName: Full=50S ribosomal protein L4
 gi|254803752|sp|B8EBK4|RL4_SHEB2 RecName: Full=50S ribosomal protein L4
 gi|91713542|gb|ABE53468.1| LSU ribosomal protein L4P [Shewanella denitrificans OS217]
 gi|120557083|gb|ABM23010.1| LSU ribosomal protein L4P [Shewanella sp. W3-18-1]
 gi|125999559|gb|ABN63634.1| LSU ribosomal protein L4P [Shewanella baltica OS155]
 gi|145566530|gb|ABP77465.1| LSU ribosomal protein L4P [Shewanella putrefaciens CN-32]
 gi|151363368|gb|ABS06368.1| ribosomal protein L4/L1e [Shewanella baltica OS185]
 gi|160858849|gb|ABX47383.1| ribosomal protein L4/L1e [Shewanella baltica OS195]
 gi|217500335|gb|ACK48528.1| ribosomal protein L4/L1e [Shewanella baltica OS223]
 gi|304348846|gb|EFM13262.1| ribosomal protein L4/L1e [Shewanella baltica OS183]
 gi|306910218|gb|EFN40651.1| ribosomal protein L4/L1e [Shewanella baltica BA175]
 gi|315265554|gb|ADT92407.1| ribosomal protein L4/L1e [Shewanella baltica OS678]
 gi|319424581|gb|ADV52655.1| ribosomal protein L4/L1e [Shewanella putrefaciens 200]
          Length = 201

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +RGGG  F          + KK+   AL+  LS+     
Sbjct: 57  KKPWRQKGTGRARAGSVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  + +A++L +  +I   ++D N  LAARN+  +++  V G+
Sbjct: 117 RLVVVESFGVEAPKTKELKAKLKAMNLEDV-LIVTAEVDENLFLAARNLYKVDVRDVAGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  + ++++  A++ +E+  
Sbjct: 176 DPVSLIAFNTVLVTADAVKQIEEML 200


>gi|156973052|ref|YP_001443959.1| 50S ribosomal protein L4 [Vibrio harveyi ATCC BAA-1116]
 gi|166199924|sp|A7MWI4|RL4_VIBHB RecName: Full=50S ribosomal protein L4
 gi|156524646|gb|ABU69732.1| hypothetical protein VIBHAR_00731 [Vibrio harveyi ATCC BAA-1116]
          Length = 200

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGREFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F          + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKSQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVMTAEAVKQVEEML 199


>gi|229815774|ref|ZP_04446099.1| hypothetical protein COLINT_02823 [Collinsella intestinalis DSM
           13280]
 gi|229808690|gb|EEP44467.1| hypothetical protein COLINT_02823 [Collinsella intestinalis DSM
           13280]
          Length = 208

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V+N +G+      +++ ++ ++P   ++  +++ Q    R G   +KGRSEV+  
Sbjct: 1   MSKFEVKNAEGKQVAEAELADAVYGIEPNIHVMHHIVKCQQACWRQGTQSTKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+RGGG  FGP P   V  +  K   LA+R ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAAQWRGGGVIFGPKPRTYVKRMNNKEVKLAMRSALSAKLRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++++D+   ++  TK  V   +AL +    + I   + D N  L+ RNIP   ++   
Sbjct: 121 NELVLVDDYGFEKPSTKAAVAMLKALGIEGKRLTIIVREDDINAYLSFRNIPKTFIITPA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             N YD++    L++         +  
Sbjct: 181 EANTYDLVNNGALLMPADIAAHFGEVL 207


>gi|184200263|ref|YP_001854470.1| 50S ribosomal protein L4 [Kocuria rhizophila DC2201]
 gi|183580493|dbj|BAG28964.1| 50S ribosomal protein L4 [Kocuria rhizophila DC2201]
          Length = 206

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/186 (32%), Positives = 94/186 (50%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +  +IF  +    +L +V+  Q    R G  K+K R+EV+  G K + QKGTGRAR  
Sbjct: 8   VELPAEIFDAQTNVALLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQG 67

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
           S       GGG   GP P       PKK+++ ALR ALSD+  +  I V+  L   E  T
Sbjct: 68  SIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNGRIHVVAELGGAEPST 127

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           K      R++     L++   + + N  L+ RN+ N++ +    +N YD+L    +V +K
Sbjct: 128 KAAKQALRSISERKNLLVVLGRGEDNAALSVRNLVNVHAVYADQLNTYDVLVSDDVVFTK 187

Query: 197 SAIEAL 202
           +A E+ 
Sbjct: 188 AAYESF 193


>gi|189029498|sp|A9KD30|RL4_COXBN RecName: Full=50S ribosomal protein L4
          Length = 205

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V + D ++   ++V++  F  + ++G++ +V+       R G    K R EV+ +G
Sbjct: 1   MELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGSG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  S     +R GG AF   P      + +K+   A+   LS+     
Sbjct: 61  AKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRRE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+L   E KT+ L    + L+L N LII     DRN  LA+RN+  +++     +
Sbjct: 121 QLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD-DRNINLASRNMVGVSVCDALHV 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ LE+R 
Sbjct: 180 DPVSLVAAENIVVTVDAVKRLEERL 204


>gi|28493520|ref|NP_787681.1| 50S ribosomal protein L4 [Tropheryma whipplei str. Twist]
 gi|46577234|sp|Q83FY7|RL4_TROWT RecName: Full=50S ribosomal protein L4
 gi|28476562|gb|AAO44650.1| 50S ribosomal protein L4 [Tropheryma whipplei str. Twist]
          Length = 248

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 1/198 (0%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           +V ++ G   G + +   +F   P   ++ +V+  Q    R G  K+K R+EV+ +G K 
Sbjct: 6   TVFDIGGNAVGTLQLVGHLFDSDPNLHLIHQVVVAQQAAFRQGTHKTKSRAEVSGSGRKP 65

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTG AR  S    Q RGGG   GPVP   VH  PKK+   AL   L+++  +  + 
Sbjct: 66  FRQKGTGNARCGSTRAPQMRGGGVVHGPVPRNYVHRTPKKMIKAALAGCLTNRARAGRVH 125

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           ++D+           +T F+   LS+ L++     D     + RNIP + L+ V  +N Y
Sbjct: 126 IVDSFG-DTPSVADALTLFQITGLSSKLLVVAQASDSVAYRSVRNIPGVRLVHVGQLNSY 184

Query: 185 DILRCSKLVLSKSAIEAL 202
           D+LR   ++ ++ A    
Sbjct: 185 DVLRSDDVLFTRGAYNVF 202


>gi|188995731|ref|YP_001929983.1| 50S ribosomal protein L4 [Porphyromonas gingivalis ATCC 33277]
 gi|226730705|sp|B2RLZ1|RL4_PORG3 RecName: Full=50S ribosomal protein L4
 gi|188595411|dbj|BAG34386.1| 50S ribosomal protein L4 [Porphyromonas gingivalis ATCC 33277]
          Length = 209

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELSV N+ GED G  + + + IFA++P    +   ++     +R G  K+K RSE++ +
Sbjct: 1   MELSVYNIKGEDTGKKVVLDDSIFAIEPNDHAIYLDVKQYMANQRQGTHKAKERSELSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G AR    +     GG + FGP P      L KK+++LA R ALS K  +
Sbjct: 61  TRKLIRQKGSGGARRGDINSPLLSGGARVFGPRPRNYTFKLNKKLKALARRSALSYKAKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTR-FRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+++      KTK               ++    ++++N  L+ARN+PN NL+   
Sbjct: 121 NEIIVVEDFNFDAPKTKAFKAISAALKVDEKKVLYVLPEVNKNVYLSARNLPNTNLILAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            IN Y +L    LVL++ ++  + + FK
Sbjct: 181 LINTYTVLASKNLVLTERSVAVVNELFK 208


>gi|294142932|ref|YP_003558910.1| 50S ribosomal protein L4 [Shewanella violacea DSS12]
 gi|293329401|dbj|BAJ04132.1| ribosomal protein L4 [Shewanella violacea DSS12]
          Length = 201

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVIGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +RGGG  F          + KK+   AL+   S+    +
Sbjct: 57  KKPWRQKGTGRARAGTVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSIFSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  +   ++L +  +I   ++D N  LAARN+  +++  V GI
Sbjct: 117 RLIVVESFTVEAPKTKELKAKLAEMNLEDV-LIVTPEIDENLFLAARNLYKVDVRDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++  A++ +E+  
Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200


>gi|193214801|ref|YP_001996000.1| 50S ribosomal protein L4 [Chloroherpeton thalassium ATCC 35110]
 gi|226730640|sp|B3QY25|RL4_CHLT3 RecName: Full=50S ribosomal protein L4
 gi|193088278|gb|ACF13553.1| ribosomal protein L4/L1e [Chloroherpeton thalassium ATCC 35110]
          Length = 210

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N DG + G  + +   IF ++P    +   +R     +  G  K K RSEV+  
Sbjct: 1   MEVKVLNKDGAETGETVELKPVIFEIEPNDHAIYLDVRSIMANQHQGTHKVKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTG AR  S       GGG  FGP P   V  + KK++ LA   ALS K  +
Sbjct: 61  GRKPYRQKGTGNARRGSSRSPVMIGGGAIFGPKPHDYVVGINKKMKRLARISALSYKAKN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+V+++ V  E KTK +V+  ++L       ++     +     + RNI  +++L   
Sbjct: 121 NEIIVMEDYVPSEIKTKEVVSFLKSLGLNEKKTLLLMPSKNDVMYKSGRNISKLSILEAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YD+L    L++ KSA+E LE   
Sbjct: 181 KASTYDLLNNKTLLIQKSALETLERSL 207


>gi|90581759|ref|ZP_01237543.1| 50S ribosomal protein L4 [Vibrio angustum S14]
 gi|330447036|ref|ZP_08310686.1| 50S ribosomal subunit protein L4 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|90437057|gb|EAS62264.1| 50S ribosomal protein L4 [Vibrio angustum S14]
 gi|328491227|dbj|GAA05183.1| 50S ribosomal subunit protein L4 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 200

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F     + ++ +V+   +   R G    K RS+V+  G
Sbjct: 1   MELVVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSDVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPLWRSGGVTFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++ALI+ G +L+ N  LAARN+  +++   + I
Sbjct: 116 RLIVVDNFALEAPKTKALVAKLKELELTDALIVTG-ELEENLFLAARNLYKVDVRDAKAI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++ +A++A+E+  
Sbjct: 175 DPVSLIAFDKVVMTAAAVKAVEEML 199


>gi|71736691|ref|YP_276705.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|109893620|sp|Q48D37|RL4_PSE14 RecName: Full=50S ribosomal protein L4
 gi|71557244|gb|AAZ36455.1| ribosomal protein L4 [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322321|gb|EFW78415.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331979|gb|EFW87915.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330879370|gb|EGH13519.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 200

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V +        I VSE  F  +  + ++ + +       R G  + K RS+V   G
Sbjct: 1   MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++   ++
Sbjct: 56  KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRSILAELVRTD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +   +  KTK L+++   + L++  +I    +D+N  LAARN+P++++  VQG 
Sbjct: 116 RLVVVQDFAVEAPKTKDLLSKLTGMGLTDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGS 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ SA++  E+  
Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199


>gi|77461299|ref|YP_350806.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf0-1]
 gi|109893623|sp|Q3K5Y9|RL4_PSEPF RecName: Full=50S ribosomal protein L4
 gi|77385302|gb|ABA76815.1| 50S ribosomal protein L4 [Pseudomonas fluorescens Pf0-1]
          Length = 200

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V +        I VSE  F  +  + ++ + +       R G  + K RS+V   G
Sbjct: 1   MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +RGGG  F   P      L KK+   A+R  L++   ++
Sbjct: 56  KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAAMRSILAELVRTD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +   +  KTK L+ +   + L++  +I    +D+N  LAARN+P++++  VQG 
Sbjct: 116 RLVVVQDFAVETPKTKDLLGKLNNMSLTDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGS 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ SA++  E+  
Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199


>gi|254516912|ref|ZP_05128970.1| ribosomal protein, L4/L1 family [gamma proteobacterium NOR5-3]
 gi|219674417|gb|EED30785.1| ribosomal protein, L4/L1 family [gamma proteobacterium NOR5-3]
          Length = 188

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/187 (28%), Positives = 100/187 (53%), Gaps = 1/187 (0%)

Query: 20  SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS 79
           S+  FA +  + ++ +V+       R G    K RS+V   G K + QKGTGRAR  +  
Sbjct: 2   SDASFAREYNEDLVHQVVTSFLAGARQGTRAQKTRSDVRGGGKKPWRQKGTGRARAGTIR 61

Query: 80  VSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL 139
              +R GG  F   P      + +K+   AL+  +S+    + ++V++NL     KTK L
Sbjct: 62  SPIWRSGGVTFAARPQDHSVKVNRKMYRAALKTIISELARQDRLVVVENLDLDAPKTKLL 121

Query: 140 VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199
           V++     +++AL+I G +++ N  LA+RN+  +++  VQGI+   +L   K++++  A+
Sbjct: 122 VSQLDGYGVNSALLISG-EVNENLYLASRNLQKVDVRDVQGIDPVSLLSHDKVMVTVDAV 180

Query: 200 EALEDRF 206
           + +E+  
Sbjct: 181 KKIEEML 187


>gi|146298160|ref|YP_001192751.1| 50S ribosomal protein L4 [Flavobacterium johnsoniae UW101]
 gi|189029503|sp|A5FMY0|RL4_FLAJO RecName: Full=50S ribosomal protein L4
 gi|146152578|gb|ABQ03432.1| 50S ribosomal protein L4/L1e [Flavobacterium johnsoniae UW101]
          Length = 209

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V + +G+D G  + +S+ +FA++P    +   ++     +R G  K+K R+EV  +
Sbjct: 1   MEVKVLDFNGKDTGRKVQLSDSVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEVTGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG  FGP P      L K ++ LA + A S K   
Sbjct: 61  TRKIKKQKGTGTARAGSVKNPLFKGGGTVFGPRPRSYSFKLNKNLKRLARKSAFSIKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++I+V+++   +   TK  +   +AL   +   +    + ++N  L++RN+   N++   
Sbjct: 121 SNIIVLEDFNFEAPNTKNFINVLKALGLENKKSLFVLGESNKNVYLSSRNLKASNVVTSS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y IL  + LVL + ++E +E+  
Sbjct: 181 ELSTYAILNTNNLVLLEGSLELIEENL 207


>gi|120437173|ref|YP_862859.1| 50S ribosomal protein L4 [Gramella forsetii KT0803]
 gi|166234671|sp|A0M597|RL4_GRAFK RecName: Full=50S ribosomal protein L4
 gi|117579323|emb|CAL67792.1| 50S ribosomal protein L4 [Gramella forsetii KT0803]
          Length = 208

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V ++ G++ G    +S+ +FA++P    +   ++     +R G  K+K R+E+  +
Sbjct: 1   MEIAVLDIKGKETGRKAKLSDSVFAIEPNDHAVYLDVKQYLANQRQGTHKAKERAEIKGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L K ++ LA + ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPIFKGGGRVFGPRPRNYGFKLNKNLKRLARKSALSIKAND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             IMVI++      KTK      +AL +     +I     ++N  L++RN+    ++   
Sbjct: 121 KAIMVIEDFSFDTPKTKNFTEVLKALGIESKKSLIVLGDSNKNVYLSSRNLKTSEVISSS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y IL    +V  + ++E +E + 
Sbjct: 181 ELSTYKILNAKSIVFLEGSLEGIESKL 207


>gi|28572368|ref|NP_789148.1| 50S ribosomal protein L4 [Tropheryma whipplei TW08/27]
 gi|46577236|sp|Q83I77|RL4_TROW8 RecName: Full=50S ribosomal protein L4
 gi|28410499|emb|CAD66885.1| 50s ribosomal protein L4 [Tropheryma whipplei TW08/27]
          Length = 248

 Score =  174 bits (442), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 1/198 (0%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           +V ++ G   G + +   +F   P   ++ +V+  Q    R G  K+K R+EV+ +G K 
Sbjct: 6   TVFDIGGNAVGTLQLVGHLFDSDPNLHLIHQVVVAQQAAFRQGTHKTKSRAEVSGSGRKP 65

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTG AR  S    Q RGGG   GPVP   VH  PKK+   AL   L+++  +  + 
Sbjct: 66  FRQKGTGNARCGSTRAPQMRGGGVVHGPVPRSYVHRTPKKMIKAALAGCLTNRARAGRVH 125

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           ++D+           +T F+   LS+ L++     D     + RNIP + L+ V  +N Y
Sbjct: 126 IVDSFG-DTPSVADALTLFQITGLSSKLLVVAQASDSVAYRSVRNIPGVRLVHVGQLNSY 184

Query: 185 DILRCSKLVLSKSAIEAL 202
           D+LR   ++ ++ A    
Sbjct: 185 DVLRSDDVLFTRGAYNVF 202


>gi|163859272|ref|YP_001633570.1| 50S ribosomal protein L4 [Bordetella petrii DSM 12804]
 gi|226730624|sp|A9IIZ9|RL4_BORPD RecName: Full=50S ribosomal protein L4
 gi|163263000|emb|CAP45303.1| 50S ribosomal protein L4 [Bordetella petrii]
          Length = 205

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+     S  + IF     + ++ +V+       R G    K R+EV +T 
Sbjct: 1   MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALVHQVVVAYQANARSGNRAQKDRAEVKHTT 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R  LS     
Sbjct: 60  KKPWRQKGTGRARAGMTSSPLWRGGGRTFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+D    +  KTK  V + ++L L + LII    +D N  LA RN+P++ ++  + 
Sbjct: 120 DRIAVVDTFGLESPKTKLAVAKLKSLGLDSVLIITDA-VDENVYLATRNLPHVAVVEPRY 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI  LE+  
Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEEML 204


>gi|73667227|ref|YP_303243.1| 50S ribosomal protein L4 [Ehrlichia canis str. Jake]
 gi|109893593|sp|Q3YRL0|RL4_EHRCJ RecName: Full=50S ribosomal protein L4
 gi|72394368|gb|AAZ68645.1| LSU ribosomal protein L4P [Ehrlichia canis str. Jake]
          Length = 205

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 115/205 (56%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+S+ N++ +  G I ++  IF++  +  IL  V+ WQ  ++R G  K+K   +++ T 
Sbjct: 1   MEVSIINVNSDKIGTIDLNPLIFSVDYRPDILKMVVNWQLSKRRAGTHKAKTIGDISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGG   FGPV     ++L KKVR L L+ ALS K   N
Sbjct: 61  AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRNHAYSLNKKVRKLGLKVALSLKNSCN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++D++     KT  ++   R  +   + +I     ++N   + RN+ N+ LL   G 
Sbjct: 121 KLLILDSIDVNFVKTTQVLQFIRNFE-HKSFLIIDKDYNKNVVCSCRNLHNVTLLKQIGT 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV DILR   ++L+  A++ LE+R 
Sbjct: 180 NVLDILRHDCIILTVGAVKYLEERL 204


>gi|291613237|ref|YP_003523394.1| ribosomal protein L4/L1e [Sideroxydans lithotrophicus ES-1]
 gi|291583349|gb|ADE11007.1| ribosomal protein L4/L1e [Sideroxydans lithotrophicus ES-1]
          Length = 206

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N +G+    I+ S+D+F  +  + ++ +++       R   SK KGRSE+A + 
Sbjct: 1   MELKVINENGKAGASINASDDLFGREYNETLVHQLVTAYQANARSANSKQKGRSEIAKST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGGK F   P       + +K+    L    S     
Sbjct: 61  RKPFAQKGTGRARAGMASSPLWRGGGKIFPNSPDQNYTQKINRKMYRAGLASIYSQLVRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D L     KTK L  + +A+   + ++I    +D N  L++RN+PN+ ++    
Sbjct: 121 GRLSVVDALSVDAPKTKLLAQKIKAMG-LDRVLIITDSMDENLYLSSRNLPNVLVVEAHQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++R  ++V+++ A+  +E+  
Sbjct: 180 ADPVSLVRFPQVVVTRGALAKIEELL 205


>gi|189465419|ref|ZP_03014204.1| hypothetical protein BACINT_01772 [Bacteroides intestinalis DSM
           17393]
 gi|189437693|gb|EDV06678.1| hypothetical protein BACINT_01772 [Bacteroides intestinalis DSM
           17393]
          Length = 208

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  I+++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV++LA + AL+ K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGARVFGPKPRDYYFKLNKKVKTLARKSALAYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++++++   +  KTK  V   +        L++   + ++N  L+ARN+ + N+  + 
Sbjct: 121 NAVVIVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVESANVQTLS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +V ++SA+ A+++  
Sbjct: 181 GLNTYRVLNAGVVVFTESALSAIDNIL 207


>gi|237749516|ref|ZP_04579996.1| large subunit ribosomal protein L4 [Oxalobacter formigenes OXCC13]
 gi|229380878|gb|EEO30969.1| large subunit ribosomal protein L4 [Oxalobacter formigenes OXCC13]
          Length = 206

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N + +  G +   + IF     + ++ +++       R   S+ K R  VA+T 
Sbjct: 1   MELKLLNGNDQAAGKVDAPDTIFGRDYNEALIHQLVVAFQANARTADSQQKNRETVAHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPII-GVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+AF   P     H + KK+    +   LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRAFPNSPDQNFSHKVNKKMYRAGVCSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + VID L     KTK L  + +      ++++     D N  LA+RN+PN+ ++    
Sbjct: 121 DRLTVIDQLAIDAPKTKMLAQKLKEFG-FGSVLVITDSFDENLYLASRNLPNVLVVEPHQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++    ++++K+A+  +E+  
Sbjct: 180 ADPVSLVHFKDVLITKAALGKIEEML 205


>gi|254495342|ref|ZP_05108266.1| 50S ribosomal protein L4 [Polaribacter sp. MED152]
 gi|85819696|gb|EAQ40853.1| 50S ribosomal protein L4 [Polaribacter sp. MED152]
          Length = 209

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 110/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G+D G  + +S+D+F ++P    +   ++     +R G  KSK R+E+  +
Sbjct: 1   MKVAVLDITGKDTGRKVELSKDVFGIEPNDHAIYLDVKQYLANQRQGTHKSKERAEIVGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K ++ LA + ALS +   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKNLKRLARKSALSIQAND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++V+++      KTK  V   ++L+  +   +      + N  L++RN+ N  ++   
Sbjct: 121 KNLVVVEDFNFDTPKTKNFVDVLKSLELDAKKSLFVLDGENANVYLSSRNLKNSKVIKAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN Y +L  +K+V+++ ++E +    
Sbjct: 181 EINTYGVLNANKIVITEGSLEGINSNL 207


>gi|42561269|ref|NP_975720.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|46577155|sp|P61065|RL4_MYCMS RecName: Full=50S ribosomal protein L4
 gi|42492767|emb|CAE77362.1| 50S RIBOSOMAL PROTEIN L4 [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301320633|gb|ADK69276.1| 50S ribosomal protein L4 [Mycoplasma mycoides subsp. mycoides SC
           str. Gladysdale]
          Length = 208

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V ++ G +   I++++ ++ ++P Q  +   +  Q    R G  K K R+EV+  G
Sbjct: 1   MKLQVLDIKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  S    Q++GGG  FGP P I     + KKVR+LA R  LS K   
Sbjct: 61  RKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++++D     +  TK +V   +         +I   + +     ++ NI  +  +   
Sbjct: 121 NNLVIVDKFEFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+D+L  +KL++++ A  A+E+ +
Sbjct: 181 QLNVFDLLNATKLLITEEAAIAVEEVY 207


>gi|238025933|ref|YP_002910164.1| 50S ribosomal protein L4 [Burkholderia glumae BGR1]
 gi|237875127|gb|ACR27460.1| Ribosomal protein L4 [Burkholderia glumae BGR1]
          Length = 206

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +++       R G    K R +V +T 
Sbjct: 1   MELKLLNANGQEGAVVNASDVVFGRDYNEALIHQIVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++L  +  KTK L  +F+A+    ++++    +D N  LA+RN+PN+ ++  + 
Sbjct: 121 GRLSVVEDLTLEAPKTKLLAEKFKAMG-LESVLVITDTVDENLYLASRNLPNVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKILVTKAAVAQIEELL 205


>gi|259909998|ref|YP_002650354.1| 50S ribosomal protein L4 [Erwinia pyrifoliae Ep1/96]
 gi|224965620|emb|CAX57152.1| 50S ribosomal protein L4 [Erwinia pyrifoliae Ep1/96]
 gi|283480095|emb|CAY76011.1| 50S ribosomal protein L4 (BL4) [Erwinia pyrifoliae DSM 12163]
          Length = 201

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L + LII G +L+ N  LAARN+  +++     I
Sbjct: 117 RLIVVEKFSLEAPKTKLLVEKLKDMALEDVLIITG-ELEENLFLAARNLYKVDVRDAAAI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTADAVKQVEEML 200


>gi|161349383|ref|ZP_02096767.1| ribosomal protein L4 [Coxiella burnetii 'MSU Goat Q177']
 gi|161830071|ref|YP_001596186.1| 50S ribosomal protein L4 [Coxiella burnetii RSA 331]
 gi|46577232|sp|Q83ES3|RL4_COXBU RecName: Full=50S ribosomal protein L4
 gi|189029499|sp|A9NAM5|RL4_COXBR RecName: Full=50S ribosomal protein L4
 gi|161761938|gb|ABX77580.1| ribosomal protein L4 [Coxiella burnetii RSA 331]
 gi|164601579|gb|EDQ95170.1| ribosomal protein L4 [Coxiella burnetii 'MSU Goat Q177']
          Length = 205

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V + D ++   ++V++  F  + ++G++ +V+       R G    K R EV+  G
Sbjct: 1   MELPVNSFDKKEASTLTVADSAFGSEYKEGLVHQVVNAYLAGGRAGTKAQKTRREVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  S     +R GG AF   P      + +K+   A+   LS+     
Sbjct: 61  AKPWRQKGTGRARAGSSRSPLWRSGGVAFAAKPRDFTQKVNRKMYRSAMASILSELIRRE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+L   E KT+ L    + L+L N LII     DRN  LA+RN+  +++     +
Sbjct: 121 QLVVVDSLKLNEPKTRELKESLKKLNLGNVLIIIDGD-DRNINLASRNMVGVSVCDALHV 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ LE+R 
Sbjct: 180 DPVSLVAAENIVVTVDAVKRLEERL 204


>gi|56751875|ref|YP_172576.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301]
 gi|81301040|ref|YP_401248.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 7942]
 gi|3122743|sp|O24690|RL4_SYNP6 RecName: Full=50S ribosomal protein L4
 gi|109893647|sp|Q31L08|RL4_SYNE7 RecName: Full=50S ribosomal protein L4
 gi|2446891|dbj|BAA22450.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301]
 gi|56686834|dbj|BAD80056.1| 50S ribosomal protein L4 [Synechococcus elongatus PCC 6301]
 gi|81169921|gb|ABB58261.1| LSU ribosomal protein L4P [Synechococcus elongatus PCC 7942]
          Length = 210

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++  +++  G+  G I+V   +   +    I+ R L  Q    R G   SK RSEV   
Sbjct: 1   MVDYVIQDWQGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRLALRTALISRSAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN--ALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KT+ +        +     +++     D+N +L+ RN+PN+ L+  
Sbjct: 121 LVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNVELSVRNLPNVKLITA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +N++D+L   ++V + +A+E +++ +
Sbjct: 181 TNLNIFDLLNADRIVSTSAALEKIQEVY 208


>gi|78064925|ref|YP_367694.1| 50S ribosomal protein L4 [Burkholderia sp. 383]
 gi|109893581|sp|Q39KG6|RL4_BURS3 RecName: Full=50S ribosomal protein L4
 gi|77965670|gb|ABB07050.1| LSU ribosomal protein L4P [Burkholderia sp. 383]
          Length = 206

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++++ +  KTK L  +F+ + L ++++I    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDIILEAPKTKLLAEKFKTMGL-DSVLIITDTVDENLYLASRNLPHVAIVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|307543826|ref|YP_003896305.1| 50S ribosomal protein L4 [Halomonas elongata DSM 2581]
 gi|307215850|emb|CBV41120.1| 50S ribosomal protein L4 [Halomonas elongata DSM 2581]
          Length = 202

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 1/200 (0%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            NL G   G + VS+  FA    + ++ +V+       R G    K RS+V   G K + 
Sbjct: 3   LNLAGAGAGTVEVSDATFAKDFNEALVHQVVTAYLAGGRQGTRAQKNRSDVRGGGKKPWR 62

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +R GG  F   P      + +K+   A+R  LS+      ++ +
Sbjct: 63  QKGTGRARAGTIRSPIWRAGGVTFAARPQDHSQKVNRKMYRAAMRSILSELVRQERLVAV 122

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           D    +  KTK L  +   L     ++I   ++D N  LAARNIPN++++ V   +   +
Sbjct: 123 DAFGVESPKTKQLAAKLGELG-LEKVLIVTEEVDENLYLAARNIPNVDVVDVAAADPVSL 181

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA+   E++ 
Sbjct: 182 VAFDKVLVTVSALRKFEEKL 201


>gi|325529679|gb|EGD06542.1| 50S ribosomal protein L4 [Burkholderia sp. TJI49]
          Length = 206

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++++ +  KTK L  +F+A+    +++I    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDILLEAPKTKLLADKFKAMG-LESVLIITDTVDENLYLASRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|107024302|ref|YP_622629.1| 50S ribosomal protein L4 [Burkholderia cenocepacia AU 1054]
 gi|115350323|ref|YP_772162.1| 50S ribosomal protein L4 [Burkholderia ambifaria AMMD]
 gi|116688373|ref|YP_833996.1| 50S ribosomal protein L4 [Burkholderia cenocepacia HI2424]
 gi|134294444|ref|YP_001118179.1| 50S ribosomal protein L4 [Burkholderia vietnamiensis G4]
 gi|170700695|ref|ZP_02891690.1| ribosomal protein L4/L1e [Burkholderia ambifaria IOP40-10]
 gi|170731683|ref|YP_001763630.1| 50S ribosomal protein L4 [Burkholderia cenocepacia MC0-3]
 gi|171318349|ref|ZP_02907507.1| ribosomal protein L4/L1e [Burkholderia ambifaria MEX-5]
 gi|172059342|ref|YP_001806994.1| 50S ribosomal protein L4 [Burkholderia ambifaria MC40-6]
 gi|254246596|ref|ZP_04939917.1| Ribosomal protein L4/L1e [Burkholderia cenocepacia PC184]
 gi|122324265|sp|Q0BJ45|RL4_BURCM RecName: Full=50S ribosomal protein L4
 gi|123071806|sp|Q1BRU9|RL4_BURCA RecName: Full=50S ribosomal protein L4
 gi|166234641|sp|A0K3M6|RL4_BURCH RecName: Full=50S ribosomal protein L4
 gi|166234647|sp|A4JAP1|RL4_BURVG RecName: Full=50S ribosomal protein L4
 gi|226730627|sp|B1YRD1|RL4_BURA4 RecName: Full=50S ribosomal protein L4
 gi|226730628|sp|B1JU23|RL4_BURCC RecName: Full=50S ribosomal protein L4
 gi|105894491|gb|ABF77656.1| LSU ribosomal protein L4P [Burkholderia cenocepacia AU 1054]
 gi|115280311|gb|ABI85828.1| LSU ribosomal protein L4P [Burkholderia ambifaria AMMD]
 gi|116646462|gb|ABK07103.1| LSU ribosomal protein L4P [Burkholderia cenocepacia HI2424]
 gi|124871372|gb|EAY63088.1| Ribosomal protein L4/L1e [Burkholderia cenocepacia PC184]
 gi|134137601|gb|ABO53344.1| LSU ribosomal protein L4P [Burkholderia vietnamiensis G4]
 gi|169814925|gb|ACA89508.1| ribosomal protein L4/L1e [Burkholderia cenocepacia MC0-3]
 gi|170134365|gb|EDT02698.1| ribosomal protein L4/L1e [Burkholderia ambifaria IOP40-10]
 gi|171096427|gb|EDT41326.1| ribosomal protein L4/L1e [Burkholderia ambifaria MEX-5]
 gi|171991859|gb|ACB62778.1| ribosomal protein L4/L1e [Burkholderia ambifaria MC40-6]
          Length = 206

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++++ +  KTK L  +F+ +   ++++I    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDIILEAPKTKLLADKFKTMG-LDSVLIITDTVDENLYLASRNLPHVAIVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|329962268|ref|ZP_08300274.1| 50S ribosomal protein L4 [Bacteroides fluxus YIT 12057]
 gi|328530376|gb|EGF57253.1| 50S ribosomal protein L4 [Bacteroides fluxus YIT 12057]
          Length = 208

 Score =  174 bits (442), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  I+++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKITLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V   +        L++   + ++N  L+ARN+   N+  + 
Sbjct: 121 NAIIVVEDFNFEAPKTKDFVAMTKNLKVSDKKLLVILPEANKNVYLSARNVKGANVQTIS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++S + A+++  
Sbjct: 181 GLNTYRVLDAGVVVLAESTLSAIDNIL 207


>gi|329577748|gb|EGG59174.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1467]
          Length = 188

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 101/186 (54%)

Query: 21  EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSV 80
           ++IF ++P + ++   +  Q    R G    K RS V   G K + QKGTGRAR  S   
Sbjct: 2   KEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRS 61

Query: 81  SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV 140
            Q+RGGG  FGP P    + LPKKVR LA++  LSDK   N+++ ++ L     KTK   
Sbjct: 62  PQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAENNLVAVEGLSFDAPKTKEFK 121

Query: 141 TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200
                L +   +++     +    L+ARN+PN++++    ++V D++  +K++ +++A+ 
Sbjct: 122 QVLANLSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDNVSVLDVVSANKVLATQTALT 181

Query: 201 ALEDRF 206
            +E+  
Sbjct: 182 QIEEVL 187


>gi|260909751|ref|ZP_05916445.1| 50S ribosomal protein L4 [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636176|gb|EEX54172.1| 50S ribosomal protein L4 [Prevotella sp. oral taxon 472 str. F0295]
          Length = 209

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N++G++ G  + +++ IF ++P   +L   ++     +R G +KSK RSE++ +
Sbjct: 1   MEVSVLNINGQETGRKVVLNDAIFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKVKVLARKSALSYKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  V             ++    +++N  L+ARN+    ++   
Sbjct: 121 NAIIVVEDFEMAAPKTKEYVNIVNNLQLEGRKSLLLLPNVNKNVYLSARNLQRSEVMTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +L    LV+++ ++EA+
Sbjct: 181 ALNAYKVLNADVLVITEKSLEAI 203


>gi|28867855|ref|NP_790474.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|66047774|ref|YP_237615.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae B728a]
 gi|213969215|ref|ZP_03397353.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato T1]
 gi|237797433|ref|ZP_04585894.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|257483186|ref|ZP_05637227.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289623848|ref|ZP_06456802.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648941|ref|ZP_06480284.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289675489|ref|ZP_06496379.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae FF5]
 gi|298489096|ref|ZP_07007118.1| LSU ribosomal protein L4p (L1e) [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|301381722|ref|ZP_07230140.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato Max13]
 gi|302061078|ref|ZP_07252619.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato K40]
 gi|302130781|ref|ZP_07256771.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|302189278|ref|ZP_07265951.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. syringae 642]
 gi|46577242|sp|Q889X0|RL4_PSESM RecName: Full=50S ribosomal protein L4
 gi|75500414|sp|Q4ZMP5|RL4_PSEU2 RecName: Full=50S ribosomal protein L4
 gi|28851091|gb|AAO54169.1| ribosomal protein L4 [Pseudomonas syringae pv. tomato str. DC3000]
 gi|63258481|gb|AAY39577.1| Ribosomal protein L4/L1e [Pseudomonas syringae pv. syringae B728a]
 gi|213925893|gb|EEB59450.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tomato T1]
 gi|298156408|gb|EFH97506.1| LSU ribosomal protein L4p (L1e) [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330869430|gb|EGH04139.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330879441|gb|EGH13590.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330891930|gb|EGH24591.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. mori str.
           301020]
 gi|330940886|gb|EGH43843.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330953196|gb|EGH53456.1| 50S ribosomal protein L4 [Pseudomonas syringae Cit 7]
 gi|330962524|gb|EGH62784.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330966910|gb|EGH67170.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|330969820|gb|EGH69886.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330976641|gb|EGH76685.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. aptata str. DSM
           50252]
 gi|330988281|gb|EGH86384.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012414|gb|EGH92470.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331018161|gb|EGH98217.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
 gi|331020283|gb|EGI00340.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 200

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V +        I VSE  F  +  + ++ + +       R G  + K RS+V   G
Sbjct: 1   MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++   ++
Sbjct: 56  KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRSILAELVRTD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +   +  KTK L+ +   + L++  +I    +D+N  LAARN+P++++  VQG 
Sbjct: 116 RLVVVQDFAVEAPKTKDLLNKLTGMGLTDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGS 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ SA++  E+  
Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199


>gi|166368483|ref|YP_001660756.1| 50S ribosomal protein L4 [Microcystis aeruginosa NIES-843]
 gi|189029509|sp|B0JI02|RL4_MICAN RecName: Full=50S ribosomal protein L4
 gi|159028205|emb|CAO89812.1| rplD [Microcystis aeruginosa PCC 7806]
 gi|166090856|dbj|BAG05564.1| 50S ribosomal protein L4 [Microcystis aeruginosa NIES-843]
          Length = 210

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+  +V+N  GE+ G  ++       +  + ++ RV+       R G + SK RSEV   
Sbjct: 1   MVNYTVKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P      + +K + LALR AL  +  +
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALISQADN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++        + KTK L              +++   ++  N  L+ RNI N+ ++  
Sbjct: 121 FIVVESFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKIIRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NVYD++   +++ + +A+  +E+ +
Sbjct: 181 DSLNVYDVILADRVIATAAALAKIEEVY 208


>gi|156405170|ref|XP_001640605.1| predicted protein [Nematostella vectensis]
 gi|156227740|gb|EDO48542.1| predicted protein [Nematostella vectensis]
          Length = 299

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/197 (32%), Positives = 103/197 (52%), Gaps = 2/197 (1%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           D +  G+I +++ +F   P+  IL RV+ WQ  ++R G +  K RSEV   G K + QKG
Sbjct: 93  DDKSLGMIELNDFVFGENPRIDILHRVVVWQRAKRRAGTACVKDRSEVRGGGRKPWPQKG 152

Query: 70  TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129
             +AR  S     FRGGG   GP P    + LPKKVR + LR ALS +    D+ ++++ 
Sbjct: 153 LNKARQGSIRAPHFRGGGVVHGPKPRSYEYTLPKKVRRMGLRVALSVRLAQGDLHIVESF 212

Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                  + L+         +A+++DG   +     AA ++  +++   + +NVY IL  
Sbjct: 213 D-DIEDDQDLMPILDQRGWQSAVLVDGS-PNERLFEAAADLDKVDVFYSENVNVYSILLR 270

Query: 190 SKLVLSKSAIEALEDRF 206
             L+LS  A++ LE+R 
Sbjct: 271 HNLILSLDAVKQLEERL 287


>gi|124003663|ref|ZP_01688511.1| ribosomal protein L4/L1 family [Microscilla marina ATCC 23134]
 gi|123990718|gb|EAY30185.1| ribosomal protein L4/L1 family [Microscilla marina ATCC 23134]
          Length = 208

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 116/207 (56%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N +GE  G  +++++ I+A++P   ++   ++     +R G  K+K R+E+  +
Sbjct: 1   MELEVINREGESTGKKVTLADAIYAIEPNDHVIYLDVKQHLANRRQGTHKAKERAEIVGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L +KV+SLA + AL+ K   
Sbjct: 61  TKKLKKQKGTGTARAGSIKSPLFRGGGRIFGPRPRDYHFKLNRKVKSLARKSALTYKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I V+++   +  KT+        + + +   ++     ++N  L++RN+P   +LP  
Sbjct: 121 NNITVVEDFNLEAPKTQDYQKVLNNISEKNEKTLLILPDHNKNLYLSSRNLPKAKVLPCS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN +++L   K+++ +S++E +E+ F
Sbjct: 181 QINTFELLNADKVLIFESSVEQIENLF 207


>gi|296137305|ref|YP_003644547.1| ribosomal protein L4/L1e [Thiomonas intermedia K12]
 gi|295797427|gb|ADG32217.1| ribosomal protein L4/L1e [Thiomonas intermedia K12]
          Length = 206

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L   N  G+      VS ++F     + ++ +++       R+G    K R+ V ++ 
Sbjct: 1   MQLDFINAQGQPAEKFEVSPEVFGRDFNEDLVHQIVIAYQANARLGNRAQKDRAVVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGGK F   P     H + KK     +R   S     
Sbjct: 61  RKPWKQKGTGRARAGMTSSPLWRGGGKIFPNSPDENFTHKVNKKAYRAGMRSLFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D    +  KTK +  + +A+   + +II     D N  LAARN+PN+ ++  + 
Sbjct: 121 GRLVVVDTFTVEAPKTKLVAEKCKAMGFDSVMIIADG-ADENLFLAARNLPNVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   +L   K+V++K A+  L++  
Sbjct: 180 ADPLSLLFYKKVVMTKGAVSQLQEML 205


>gi|120609042|ref|YP_968720.1| 50S ribosomal protein L4 [Acidovorax citrulli AAC00-1]
 gi|166234623|sp|A1TJ08|RL4_ACIAC RecName: Full=50S ribosomal protein L4
 gi|120587506|gb|ABM30946.1| LSU ribosomal protein L4P [Acidovorax citrulli AAC00-1]
          Length = 206

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    I V E +F  +  + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNDQGQAASKIDVPETVFDRQYNEDLIHQIVVAYRANARQGTRAQKDREQVRHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMASILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L  +  KTK L  +F+A++L + ++I   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSLKVETPKTKVLADKFKAMNLQSVMVI-SDEVDENLYLASRNLKNVFVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI+ L++ F
Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205


>gi|24371830|ref|NP_715872.1| 50S ribosomal protein L4 [Shewanella oneidensis MR-1]
 gi|117918658|ref|YP_867850.1| 50S ribosomal protein L4 [Shewanella sp. ANA-3]
 gi|46577265|sp|Q8EK67|RL4_SHEON RecName: Full=50S ribosomal protein L4
 gi|166199865|sp|A0KRM5|RL4_SHESA RecName: Full=50S ribosomal protein L4
 gi|24345643|gb|AAN53317.1|AE015473_4 ribosomal protein L4 [Shewanella oneidensis MR-1]
 gi|117610990|gb|ABK46444.1| LSU ribosomal protein L4P [Shewanella sp. ANA-3]
          Length = 201

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +RGGG  F          + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGGVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  + +A++L +  +I   ++D N  LAARN+  +++  V G+
Sbjct: 117 RLVVVESFSVEAPKTKELKAKLKAMNLEDV-LIVTSEVDENLFLAARNLYKVDVRDVAGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  + ++++  A++ +E+  
Sbjct: 176 DPVSLIAFNTVLVTADAVKQIEEML 200


>gi|229592902|ref|YP_002875021.1| 50S ribosomal protein L4 [Pseudomonas fluorescens SBW25]
 gi|312963367|ref|ZP_07777850.1| 50S ribosomal protein L4 [Pseudomonas fluorescens WH6]
 gi|259491566|sp|C3K2X5|RL4_PSEFS RecName: Full=50S ribosomal protein L4
 gi|229364768|emb|CAY52765.1| 50S ribosomal protein L4 [Pseudomonas fluorescens SBW25]
 gi|311282447|gb|EFQ61045.1| 50S ribosomal protein L4 [Pseudomonas fluorescens WH6]
          Length = 200

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V +        I VSE  F  +  + ++ + +       R G  + K RS+V   G
Sbjct: 1   MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRQGSKQQKTRSDVRGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++   ++
Sbjct: 56  KRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHSQKLNKKMYRAALRSILAELVRTD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+ +   +  KTK L+ +   + L++  +I    +D+N  LAARN+P++++  VQG 
Sbjct: 116 RLVVVQDFAVESPKTKDLLGKLNNMSLTDV-LIVSEAVDQNLYLAARNLPHVDVRDVQGS 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++ SA++  E+  
Sbjct: 175 DPVSLIAYDKVLITVSAVKKFEELL 199


>gi|281422250|ref|ZP_06253249.1| ribosomal protein L4/L1 family protein [Prevotella copri DSM 18205]
 gi|281403755|gb|EFB34435.1| ribosomal protein L4/L1 family protein [Prevotella copri DSM 18205]
          Length = 209

 Score =  174 bits (441), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV ++ G++ G  +++++ +F ++P   +L   ++     +R G +KSK RSE++ +
Sbjct: 1   MEVSVLDIKGQETGRKVALNDAVFGIEPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYRFKLNKKVKILARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I+++++   +  KTK  ++  + L +    ++    + ++N  L+ARN+    ++   
Sbjct: 121 SAIVMLEDFTFEAPKTKEFLSIIKNLKIEGKKVLFVLPESNKNVYLSARNLQRAEVILAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    +V+++ ++E ++   
Sbjct: 181 NVNSYKVLNADVVVITEKSLETIDQIL 207


>gi|148243216|ref|YP_001228373.1| 50S ribosomal protein L4 [Synechococcus sp. RCC307]
 gi|147851526|emb|CAK29020.1| 50S ribosomal protein L4 [Synechococcus sp. RCC307]
          Length = 210

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +   +++  G++ G  S+   +        ++ R +  Q    R G + +  RSEV   G
Sbjct: 1   MNCVIQDWQGKEAGKASLDLKVAKETSAADLIHRAVVRQLANARQGTASTLTRSEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +    
Sbjct: 61  RKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYELDMNRKERRLALRTALMSRSEDM 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            ++        + KTK +++      +   + +++    +  N +L+ RN+P + L+   
Sbjct: 121 VVVKAFGDKLAKPKTKEVLSALERWGVPAGSKVLMVLADISDNVRLSVRNLPQLKLIAAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+D+L   KLV+S+ A+  +++ +
Sbjct: 181 QLNVFDLLNAQKLVVSEDALTKIQEVY 207


>gi|73542862|ref|YP_297382.1| 50S ribosomal protein L4 [Ralstonia eutropha JMP134]
 gi|194291021|ref|YP_002006928.1| 50S ribosomal protein l4 [Cupriavidus taiwanensis LMG 19424]
 gi|109893626|sp|Q46WE5|RL4_RALEJ RecName: Full=50S ribosomal protein L4
 gi|226730647|sp|B3R7S2|RL4_CUPTR RecName: Full=50S ribosomal protein L4
 gi|72120275|gb|AAZ62538.1| LSU ribosomal protein L4P [Ralstonia eutropha JMP134]
 gi|193224856|emb|CAQ70867.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Cupriavidus taiwanensis LMG 19424]
          Length = 206

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   +G+    ++ S ++F     + ++ +++       R G  K K R EV +T 
Sbjct: 1   MELKLLQDNGQVGAGVAASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R   S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMRSIYSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D       KTK L  +F+A+   ++++I    LD N  LA+RN+P++ ++  + 
Sbjct: 121 GRINVVDGFTVDAPKTKLLADKFKAMG-LDSVLIITDSLDENLYLASRNLPHVAVVEPRQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++   K++++K+A+  +E+  K
Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206


>gi|146308922|ref|YP_001189387.1| 50S ribosomal protein L4 [Pseudomonas mendocina ymp]
 gi|166199847|sp|A4XZ89|RL4_PSEMY RecName: Full=50S ribosomal protein L4
 gi|145577123|gb|ABP86655.1| LSU ribosomal protein L4P [Pseudomonas mendocina ymp]
          Length = 200

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 105/200 (52%), Gaps = 3/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            N++G     I VS+  F  +  + ++ + +       R G    K RS+V+  G + + 
Sbjct: 3   LNVNGAQA--IEVSDATFGGEFNETLVHQAVVAYMAGGRQGTKGQKSRSDVSGGGKRPWR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +RGGG  F          L KK+   ALR  L++   ++ ++V+
Sbjct: 61  QKGTGRARAGTTRGPIWRGGGVTFAASTRNHDQKLNKKMYRAALRSILAELVRTDRLVVV 120

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           ++   +  KTK L+++   L L++  +I    +D+N  LAARN+P++++  VQG +   +
Sbjct: 121 EDFAVEAPKTKALLSKLNGLGLNDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGSDPVSL 179

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA++  E+  
Sbjct: 180 IAYEKVLVTVSAVKKFEELL 199


>gi|86158368|ref|YP_465153.1| 50S ribosomal protein L4P [Anaeromyxobacter dehalogenans 2CP-C]
 gi|109893573|sp|Q2IJ86|RL4_ANADE RecName: Full=50S ribosomal protein L4
 gi|85774879|gb|ABC81716.1| LSU ribosomal protein L4P [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 206

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +L  +  G + +++ +FA +  + +   V++ +    R G    K RS V+  
Sbjct: 1   MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S   SQ+ GGGKA GP P    + +PKKVR  ALR AL+ +   
Sbjct: 61  GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++     +  KT     +  A   +   ++     +     + RN+   + L V+G
Sbjct: 121 QKLVIVQEWKPEGPKTAA-AAKVLAALGAKKALVVDDAANLALARSVRNLAGSDFLAVEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR   LVL+    + LE   
Sbjct: 180 LNVYDILRHDALVLTADTAKKLEASL 205


>gi|113968545|ref|YP_732338.1| 50S ribosomal protein L4 [Shewanella sp. MR-4]
 gi|114045708|ref|YP_736258.1| 50S ribosomal protein L4 [Shewanella sp. MR-7]
 gi|123030070|sp|Q0HNT6|RL4_SHESM RecName: Full=50S ribosomal protein L4
 gi|123131840|sp|Q0I0A4|RL4_SHESR RecName: Full=50S ribosomal protein L4
 gi|113883229|gb|ABI37281.1| LSU ribosomal protein L4P [Shewanella sp. MR-4]
 gi|113887150|gb|ABI41201.1| LSU ribosomal protein L4P [Shewanella sp. MR-7]
          Length = 201

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +RGGG  F          + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGGVKGPIWRGGGVTFAAKTQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK L  + +A++L +  +I   ++D N  LAARN+  +++  V G+
Sbjct: 117 RLVVVESFSVEAPKTKELKAKLKAMNLEDV-LIVTAEVDENLFLAARNLYKVDVRDVAGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  + ++++  A++ +E+  
Sbjct: 176 DPVSLIAFNTVLVTADAVKQIEEML 200


>gi|209693925|ref|YP_002261853.1| 50S ribosomal protein L4 [Aliivibrio salmonicida LFI1238]
 gi|226730608|sp|B6EPS6|RL4_ALISL RecName: Full=50S ribosomal protein L4
 gi|208007876|emb|CAQ78006.1| 50S ribosomal protein L4 [Aliivibrio salmonicida LFI1238]
          Length = 200

 Score =  174 bits (441), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 111/205 (54%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V     +    ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMV-----KGAAALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRSGGVTFAAKPQDHSLKVNKKMYRGALKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KTK LV + + L+L++ LI+ G ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVEDFSIEAPKTKELVAKLKELELNDVLIVTG-EVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++ +A++ +E+  
Sbjct: 175 DPVSLVAFNKVLMTAAAVKQVEEML 199


>gi|326315225|ref|YP_004232897.1| 50S ribosomal protein L4/L1e [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372061|gb|ADX44330.1| ribosomal protein L4/L1e [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 206

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    I V E +F  +  + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNDQGQAASKIDVPETVFDRQYNEDLIHQIVVAYRANARQGTRAQKDREQVRHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMASILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L  +  KTK L  +F+A++L + ++I   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSLKVETPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI+ L++ F
Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205


>gi|255994808|ref|ZP_05427943.1| ribosomal protein L4/L1 family protein [Eubacterium saphenum ATCC
           49989]
 gi|255993521|gb|EEU03610.1| ribosomal protein L4/L1 family protein [Eubacterium saphenum ATCC
           49989]
          Length = 207

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 112/206 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M E+++  ++G+D G + +S+ +F + P +  +  V++      R G   +K R +V   
Sbjct: 1   MSEVNMMTIEGKDAGKLKLSDAVFGITPNENAVREVIKNFLANNRQGTQSAKTRGDVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S +     GGG AF P P    + LPKKV+ LA+  ALS K  +
Sbjct: 61  GRKPFRQKGTGRARQGSTTDPTKVGGGVAFAPKPRSYSYTLPKKVKKLAMISALSSKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+D L   + +TK +V   + +  +   +I     D     +A NIPN+    V  
Sbjct: 121 KELIVLDKLEIADYRTKDVVEMLKNVKAAKKALIVTADKDEKVVKSAANIPNVETTNVSR 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVY+I+  +  + +K+AIE +E+ +
Sbjct: 181 MNVYEIVNHTNFIATKAAIEKIEEVY 206


>gi|206558642|ref|YP_002229402.1| 50S ribosomal protein L4 [Burkholderia cenocepacia J2315]
 gi|226730629|sp|B4E5C1|RL4_BURCJ RecName: Full=50S ribosomal protein L4
 gi|198034679|emb|CAR50546.1| 50S ribosomal protein L4 [Burkholderia cenocepacia J2315]
          Length = 206

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQVVIAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++++ +  KTK L  +F+ +   ++++I    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDIILEAPKTKLLADKFKTMG-LDSVLIITDTVDENLYLASRNLPHVAIVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|330505206|ref|YP_004382075.1| 50S ribosomal protein L4 [Pseudomonas mendocina NK-01]
 gi|328919492|gb|AEB60323.1| 50S ribosomal protein L4 [Pseudomonas mendocina NK-01]
          Length = 200

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/200 (28%), Positives = 103/200 (51%), Gaps = 3/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            N++G     I VS+  F  +  + ++ + +       R G    K RS+V+  G + + 
Sbjct: 3   LNVNGAQA--IEVSDATFGGEFNETLVHQAVVAYMAGGRQGTKGQKSRSDVSGGGKRPWR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +RGGG  F          L KK+   ALR  L++   ++ ++V+
Sbjct: 61  QKGTGRARAGTTRGPIWRGGGVTFAASTRNHDQKLNKKMYRAALRSILAELVRTDRLVVV 120

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           ++      KTK L+ +   L L++  +I    +D+N  LAARN+P++++  VQG +   +
Sbjct: 121 EDFAVDAPKTKTLLAKLNGLGLNDV-LIVSDAVDQNLYLAARNLPHVDVRDVQGSDPVSL 179

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA++  E+  
Sbjct: 180 IAYEKVLVTVSAVKKFEELL 199


>gi|187476540|ref|YP_784564.1| 50S ribosomal protein L4 [Bordetella avium 197N]
 gi|109893578|sp|Q2L2F7|RL4_BORA1 RecName: Full=50S ribosomal protein L4
 gi|115421126|emb|CAJ47610.1| 50S ribosomal protein L4 [Bordetella avium 197N]
          Length = 205

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+     S  + IF     + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALVHQIVVAYQANARSGNRAQKDRAEVKHST 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+AF   P       + KK+    +R  LS     
Sbjct: 60  KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+D    +  KTK    + +AL   ++++I    +D N  LA RN+P++ ++  + 
Sbjct: 120 DRIAVVDTFSLESPKTKLAAEKLKALG-LDSVLIITDTVDENVYLATRNLPHVAVVEPRY 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI  LE+  
Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEEML 204


>gi|226942779|ref|YP_002797852.1| 50S ribosomal protein L4 [Azotobacter vinelandii DJ]
 gi|259491548|sp|C1DKL4|RL4_AZOVD RecName: Full=50S ribosomal protein L4
 gi|226717706|gb|ACO76877.1| Ribosomal protein L4/L1e [Azotobacter vinelandii DJ]
          Length = 200

 Score =  174 bits (440), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 3/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            N++G     I VSE  F  +  + ++ + +       R G  + K RS+V+  G + + 
Sbjct: 3   LNVNGAQA--IEVSERTFGGEFNETLVHQAVVAYLAGGRQGSKQQKNRSDVSGGGKRPWR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  LS+      ++V+
Sbjct: 61  QKGTGRARAGTSRGPLWRGGGVTFAARPQNHDQKLNKKMYRAALRSILSELVRQERLVVV 120

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           ++      KTK LV++   L LS+  +I    +D+N  LAARN+P++++  V G +   +
Sbjct: 121 EDFAVDAPKTKSLVSKLGGLGLSDV-LIVSDAVDQNLYLAARNLPHVDVRDVLGSDPVSL 179

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++  A++  E+  
Sbjct: 180 IAYDKVLITVPAVKKFEELL 199


>gi|332187850|ref|ZP_08389584.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17]
 gi|332012200|gb|EGI54271.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17]
          Length = 208

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 80/206 (38%), Positives = 121/206 (58%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V++  G D   I +++++F L P+  IL RV+ WQ  ++R     ++ R++VA +G
Sbjct: 1   MKVKVQSFAGTDAADIELNDEVFGLDPRADILHRVVTWQLEKRRATARGTRERADVARSG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+  QKG G ARH  +    F GGGKA G         L KKVR+L L+ ALS    + 
Sbjct: 61  KKLGRQKGGGVARHGDRRAPVFIGGGKAHGARVRDFNPGLNKKVRALGLKMALSSHAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++V+++L  +  KTK L     +      AL+IDG  ++ +F LAA N+  IN+LP  G
Sbjct: 121 SLIVMNDLAVEGNKTKTLQGDLVKLGFGKTALVIDGDAVETSFALAAGNLKEINVLPAAG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL+   LVL++SA+E LE RF
Sbjct: 181 ANVYDILKHDTLVLTRSAVEKLEARF 206


>gi|78189806|ref|YP_380144.1| 50S ribosomal protein L4 [Chlorobium chlorochromatii CaD3]
 gi|109893584|sp|Q3APH4|RL4_CHLCH RecName: Full=50S ribosomal protein L4
 gi|78172005|gb|ABB29101.1| LSU ribosomal protein L4P [Chlorobium chlorochromatii CaD3]
          Length = 208

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVIS-VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N  G + G +  + +DIF ++  +  +   ++     KR G  K+K RSEV   
Sbjct: 1   MELKVLNTAGTETGEVVILRDDIFGIEISEHAMYLDVKSILANKRQGTHKAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S       GGG  FGP P      + KKV+ LA R ALS K  +
Sbjct: 61  GKKPFRQKGTGNARQGSSRSPIHVGGGTIFGPQPHTYEQKVNKKVKLLARRSALSAKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+D+      KTK      + L   +   ++   + D     + RNI  + ++   
Sbjct: 121 GKIVVVDDFRFDAIKTKPFADILKNLGLDAKKTLLLMPEYDMVVNRSGRNIAKLEIMTAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL  + L++ KSA++ +++  
Sbjct: 181 KASTYDILYSNTLLVQKSALKTIDETL 207


>gi|87300912|ref|ZP_01083754.1| 50S ribosomal protein L4 [Synechococcus sp. WH 5701]
 gi|87284783|gb|EAQ76735.1| 50S ribosomal protein L4 [Synechococcus sp. WH 5701]
          Length = 211

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+   VR+  G++ G  S+   +        ++ R +  Q    R G + +  R+EV   
Sbjct: 1   MVNCVVRDWQGKEAGEASLDLKVAKKSSAADLVHRAVVRQLANARQGTASTLTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYTLAMNRKERRLALRTALISRAAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KTK +V      D+   + +++         + + RN+  + L+  
Sbjct: 121 ILVVKGFAADLEVPKTKEIVAALDRWDVPAGSKVLLVLDAPGDVVRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LVLS+ A+  +++ +
Sbjct: 181 DQLNVFDLLHANVLVLSEEALAKIQEIY 208


>gi|312130548|ref|YP_003997888.1| lsu ribosomal protein l4p [Leadbetterella byssophila DSM 17132]
 gi|311907094|gb|ADQ17535.1| LSU ribosomal protein L4P [Leadbetterella byssophila DSM 17132]
          Length = 209

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N  G++ G  + +SE++F ++P Q ++   ++     +R G  KSK R+EVA +
Sbjct: 1   MEVKVINKTGQETGKTLKLSEEVFGIEPNQHVVWLDVKHYLAAQRQGTHKSKERAEVARS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G ARH S     + GGG+ FGP P      L  KV+ LA +  LS +   
Sbjct: 61  TKKLLRQKGSGGARHGSAKAPIYVGGGRVFGPRPRNYDFKLNLKVKQLARKSVLSARLAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N + V+++      KTK  V    AL       +      + N  L+ARNIP   ++ V 
Sbjct: 121 NQLKVVEDFGFDTPKTKAYVEFLNALSLSGKKTLFVVNGSENNLYLSARNIPKTKVVDVN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            +N YD++    ++L++SAI  LE   K
Sbjct: 181 SVNTYDLVNTDTILLAESAISPLETILK 208


>gi|319900925|ref|YP_004160653.1| LSU ribosomal protein L4P [Bacteroides helcogenes P 36-108]
 gi|319415956|gb|ADV43067.1| LSU ribosomal protein L4P [Bacteroides helcogenes P 36-108]
          Length = 208

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N+ GED G  ++++E IF ++P    +   ++     +R G  KSK RSE++ +
Sbjct: 1   MEVNVYNIKGEDTGRKVTLNESIFGIEPNDHAIYLDVKQFMANQRQGTHKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K  +
Sbjct: 61  TRKIGRQKGGGGARRGDMNSPVLVGGGRVFGPKPRDYYFKLNKKVKALARKSALSYKAQN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  +   +        L++   + ++N  L+ARN+ + N+  V 
Sbjct: 121 NAIVVVEDFTFATPKTKDFIEMTKNLKVSDKKLLVVLPEANKNVYLSARNVKSANVQAVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G+N Y +L    +VL++SA+ A+++  
Sbjct: 181 GLNTYRVLDAGIIVLAESALSAIDNIL 207


>gi|15604504|ref|NP_221022.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Madrid E]
 gi|6226007|sp|Q9ZCQ6|RL4_RICPR RecName: Full=50S ribosomal protein L4
 gi|3861198|emb|CAA15098.1| 50S RIBOSOMAL PROTEIN L4 (rplD) [Rickettsia prowazekii]
 gi|292572286|gb|ADE30201.1| 50S ribosomal protein L4 [Rickettsia prowazekii Rp22]
          Length = 207

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 121/207 (58%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++  + +L  E+ G I++++DIFA++  +  I+ +V+ WQ  +   G  K+K  SEV+ T
Sbjct: 1   MKTKILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKGTG AR  S    Q RGGG + GP        LPKKVR L L HALS+K+  
Sbjct: 61  TKKPFKQKGTGNARQGSLRSVQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKYAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +++ID+L   + KT  LV         +  +IDG ++D NF LA +NI N  ++P  G
Sbjct: 121 EKLLIIDSLKLDKPKTSILVNLLSKFQGQSFFVIDGNKVDINFSLATKNIYNTLIVPQIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NVYDI+R   ++LS+ A+  LE+R +
Sbjct: 181 ANVYDIIRHEYVLLSQEAVSFLEERLR 207


>gi|326385098|ref|ZP_08206768.1| 50S ribosomal protein L4 [Gordonia neofelifaecis NRRL B-59395]
 gi|326196183|gb|EGD53387.1| 50S ribosomal protein L4 [Gordonia neofelifaecis NRRL B-59395]
          Length = 219

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 1/203 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L VRN DG + G + +  ++F +     ++ +V+  Q    R G   +K R +VA  G+
Sbjct: 10  TLDVRNADGTNNGTVDLPAELFDVTANIALMHQVVVAQQAAGRQGTHSTKTRGQVAGGGA 69

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P      + KKV++ ALR ALSD+  +  
Sbjct: 70  KPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYTQKVNKKVKAAALRGALSDRARNER 129

Query: 123 IM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I  V + +  +   TK        L      ++   + D        N+ N+  +    +
Sbjct: 130 IHVVTELVAGQTPSTKAARKFLELLSDRRKFLVVVSREDVTAWKGVANLGNVLPIAPDQL 189

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N YD+L   ++V S   + A  +
Sbjct: 190 NTYDVLDSDEVVFSVETLNAFIE 212


>gi|161523430|ref|YP_001578442.1| 50S ribosomal protein L4 [Burkholderia multivorans ATCC 17616]
 gi|189351797|ref|YP_001947425.1| 50S ribosomal protein L4 [Burkholderia multivorans ATCC 17616]
 gi|221201566|ref|ZP_03574604.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2M]
 gi|221207359|ref|ZP_03580369.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2]
 gi|221213497|ref|ZP_03586472.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD1]
 gi|254253516|ref|ZP_04946834.1| Ribosomal protein L4 [Burkholderia dolosa AUO158]
 gi|226730630|sp|A9ADJ4|RL4_BURM1 RecName: Full=50S ribosomal protein L4
 gi|124896125|gb|EAY70005.1| Ribosomal protein L4 [Burkholderia dolosa AUO158]
 gi|160340859|gb|ABX13945.1| ribosomal protein L4/L1e [Burkholderia multivorans ATCC 17616]
 gi|189335819|dbj|BAG44889.1| large subunit ribosomal protein L4 [Burkholderia multivorans ATCC
           17616]
 gi|221166949|gb|EED99420.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD1]
 gi|221172947|gb|EEE05384.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2]
 gi|221178382|gb|EEE10791.1| 50S ribosomal protein L4 [Burkholderia multivorans CGD2M]
          Length = 206

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++  V++ S+ +F     + ++ +++       R G    K R +V +T 
Sbjct: 1   MELKLLNENGQEGAVVNASDVVFGRDYNEALIHQIVVAYQANARQGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++++V +  KTK L  +F+A+   ++++I    +D N  LA+RN+P++ ++  + 
Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMG-LDSVLIITDTVDENLYLASRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLVTKAAVAQIEELL 205


>gi|197122340|ref|YP_002134291.1| 50S ribosomal protein L4 [Anaeromyxobacter sp. K]
 gi|226730611|sp|B4UBA0|RL4_ANASK RecName: Full=50S ribosomal protein L4
 gi|196172189|gb|ACG73162.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. K]
          Length = 206

 Score =  174 bits (440), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +L  +  G + +++ +FA +  + +   V++ +    R G    K RS V+  
Sbjct: 1   MAKFDVYDLSKKKVGELDLADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S   SQ+ GGGKA GP P    + +PKKVR  ALR AL+ +   
Sbjct: 61  GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++        KT     +  A   +   ++     +     + RN+   + L V+G
Sbjct: 121 QKLVIVQEWKPGAPKTAA-AAKVLAALGAKKALVVDDAANLALAKSVRNLDGSDFLAVEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDILR   LVL+    + LE   
Sbjct: 180 LNVYDILRHDALVLTADTAKKLEASL 205


>gi|282858373|ref|ZP_06267553.1| ribosomal protein L4/L1 family protein [Prevotella bivia
           JCVIHMP010]
 gi|282588821|gb|EFB93946.1| ribosomal protein L4/L1 family protein [Prevotella bivia
           JCVIHMP010]
          Length = 209

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  ++++E+IF ++P   +L   ++     +R G +KSK RSE A +
Sbjct: 1   MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++V+++   +  KTK  V   +        +++   +++++  L+ARN+    ++   
Sbjct: 121 NAVVVVEDFNLEAPKTKDFVNITKNLKVDGKKVLLVLPEVEKSVYLSARNLKKAEVMTAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV+++++++ +++  
Sbjct: 181 QVNSYKVLNADVLVVTENSLKVIDEIL 207


>gi|74316424|ref|YP_314164.1| 50S ribosomal protein L4 [Thiobacillus denitrificans ATCC 25259]
 gi|109893658|sp|Q3SLP8|RL4_THIDA RecName: Full=50S ribosomal protein L4
 gi|74055919|gb|AAZ96359.1| ribosomal protein L4 [Thiobacillus denitrificans ATCC 25259]
          Length = 205

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 103/205 (50%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V N  GE    ++ S++ F     + ++ +V+       R G    + R+EV+ + 
Sbjct: 1   MDLTVINDRGEQVASVAASDETFGRDYNEALVHQVVTAFQANARSGNRAQQTRAEVSAST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG  F   P     H + +K+    L   LS     
Sbjct: 61  HKPWRQKGTGRARSGRASSPIWRGGGVTFPNKPNENFTHKVNRKMYRAGLAAILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++L  +  KTK L  + +++     +II    +D N  L++RN+PN+ ++    
Sbjct: 121 GKLKVVESLGIESPKTKLLAGKLKSMGYGKVMIIADA-IDDNLWLSSRNLPNVYVVEPHQ 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
            + + +++   ++++K+AI+  E+ 
Sbjct: 180 ADPWSLVKFGNVLITKAAIKQFEEM 204


>gi|194335446|ref|YP_002017240.1| ribosomal protein L4/L1e [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307923|gb|ACF42623.1| ribosomal protein L4/L1e [Pelodictyon phaeoclathratiforme BU-1]
          Length = 212

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 100/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVI-SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N  G + G + ++ +DIF  +  +  +   ++     +R G  KSK R EV   
Sbjct: 5   MELKVLNTGGTETGEVVTLRDDIFGAEISEHAMYLDVKSILANRRQGTHKSKTRGEVRGG 64

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K   QKGTG AR  S       GGG  FGPVP      + KKV+ LA R ALS K  +
Sbjct: 65  GRKPLRQKGTGNARQGSSRSPLNIGGGTIFGPVPHAYDQKVNKKVKLLARRSALSSKAKA 124

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+VI++ V +  KTK      + L       ++     D     + +NI  +N++   
Sbjct: 125 GQIVVIEDFVFENIKTKPFAQILKNLGLAEKKTLMLTPGYDLIIARSGKNIAALNIMTAD 184

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDIL    L++ K+A++ +ED  
Sbjct: 185 KASTYDILHSHTLLVQKTALKKIEDTL 211


>gi|52426102|ref|YP_089239.1| 50S ribosomal protein L4 [Mannheimia succiniciproducens MBEL55E]
 gi|81609390|sp|Q65QV6|RL4_MANSM RecName: Full=50S ribosomal protein L4
 gi|52308154|gb|AAU38654.1| RplD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 200

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LAVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D       KTK LV + + L L +  +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVDKFEIDAPKTKVLVQKLKDLALEDV-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFNKVVVTVDAVKQIEEML 199


>gi|288801099|ref|ZP_06406555.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288332033|gb|EFC70515.1| ribosomal protein L4/L1 family protein [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 209

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 112/203 (55%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N++G++ G  ++++E IF + P   +L   ++     +R G +KSK RSE++ +
Sbjct: 1   MEVSVLNINGQETGRKVTLNESIFGITPNDHVLYLDVKQYLANQRQGTAKSKERSEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV++LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPLLVGGGRVFGPKPRDYRFKLNKKVKTLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + IM++++   +  KTK  V   + L + +   ++   ++++N  L+ARN+    ++   
Sbjct: 121 SAIMILEDFNLEAPKTKEFVNVVKNLKIDSKKVLLLLPEVNKNVYLSARNLQRSEVMLAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +L    LV ++ ++E +
Sbjct: 181 TLNAYKVLNADVLVFTEKSLEVV 203


>gi|311744808|ref|ZP_07718604.1| 50S ribosomal protein L4 [Aeromicrobium marinum DSM 15272]
 gi|311311925|gb|EFQ81846.1| 50S ribosomal protein L4 [Aeromicrobium marinum DSM 15272]
          Length = 323

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 1/188 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  DIF  +    ++ +V+  Q    R G   +K R EV   G K Y QKGTGRAR 
Sbjct: 9   DVDLPVDIFGTQVNIPLIHQVVVAQLAAARQGTHDTKSRGEVRGGGKKPYRQKGTGRARQ 68

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134
            S    Q+ GGG   GP P       PKK+++ ALR ALSD+  S  + V+D  VS    
Sbjct: 69  GSIRAPQYNGGGVVHGPTPRNYDQRTPKKMKAAALRGALSDRARSGRLHVVDAFVSAAAP 128

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
            TK  V   R++ L   +++   + D     + RN+ ++ +LP   +N YD+L+   L+ 
Sbjct: 129 STKDAVATLRSITLRPRVLVAVTREDVVTAKSLRNVADVVILPFDQLNTYDVLKSDDLIF 188

Query: 195 SKSAIEAL 202
           ++ A +  
Sbjct: 189 TREAFDGF 196


>gi|83319335|ref|YP_424659.1| 50S ribosomal protein L4 [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
 gi|90110059|sp|P10135|RL4_MYCCT RecName: Full=50S ribosomal protein L4
 gi|83283221|gb|ABC01153.1| 50S ribosomal protein L4 [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 208

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V +  G +   I++++ ++ ++P Q  +   +  Q    R G  K K R+EV+  G
Sbjct: 1   MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  S    Q++GGG  FGP P I     + KKVR+LA R  LS K   
Sbjct: 61  RKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++++D     +  TK +V   +         +I   + +     ++ NI  +  +   
Sbjct: 121 NNLVIVDKFDFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+D+L  +KL++++ A  A+E+ +
Sbjct: 181 QLNVFDLLNATKLLITEEAAIAVEEVY 207


>gi|297242967|ref|ZP_06926905.1| ribosomal protein L4 [Gardnerella vaginalis AMD]
 gi|296889178|gb|EFH27912.1| ribosomal protein L4 [Gardnerella vaginalis AMD]
          Length = 221

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 7/207 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQG------ILARVLRWQSWRKRIGCSKSKGRS 55
           + L+V +  G   G +    +IF +   +       ++ +V+  Q    R G    K R+
Sbjct: 4   VTLNVTDTKGNASGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115
            V+  G K + QKGTGRAR  S    Q+  GG   GPVP       PKK+++ ALR+ LS
Sbjct: 63  NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYVLS 122

Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175
           D+  +  I V+D  +     TK  V     +  +    +   + + N  ++ RNIP +++
Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202
           +    +N YD++    +V SK   EA 
Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209


>gi|302877802|ref|YP_003846366.1| 50S ribosomal protein L4/L1e [Gallionella capsiferriformans ES-2]
 gi|302580591|gb|ADL54602.1| ribosomal protein L4/L1e [Gallionella capsiferriformans ES-2]
          Length = 207

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N  G     +  S+++F     + ++ +++       R G SK K R E+A + 
Sbjct: 1   MELKVINDKGLSTANLVASDEVFGRGYNEDLVHQLVTAYQANARAGNSKQKSRCEIAKST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGGK F           + +K+        LS     
Sbjct: 61  RKPFAQKGTGRARAGMASSPLWRGGGKIFPNTGEENYTQKVNRKMYRAGFAAILSKLVAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++VID+L     KTK L  + + L ++  +++    +D N  L++RN+PN+ +L    
Sbjct: 121 SRLVVIDDLTVDAPKTKLLADKIKNLGIAGRVLVITDSMDENLYLSSRNLPNVLVLEAYQ 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++R   +V+++ A+  +E+ F
Sbjct: 181 ADPVSLVRFPSVVVTRGAVAKIEEMF 206


>gi|255536153|ref|YP_003096524.1| LSU ribosomal protein L4p (L1e) [Flavobacteriaceae bacterium
           3519-10]
 gi|255342349|gb|ACU08462.1| LSU ribosomal protein L4p (L1e) [Flavobacteriaceae bacterium
           3519-10]
          Length = 209

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL+V N  G++ G  + + E IF ++P Q  +   ++     +R G  KSK RSE+  +
Sbjct: 1   MELTVFNTSGKETGRSVQLDEAIFGIEPNQHAVYLEVKQYLAAQRQGTHKSKERSEITAS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G AR+       FRGGG+ FGP P      L K ++ LA +  LS K   
Sbjct: 61  TRKLKKQKGSGSARYGDIKSPTFRGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I V++       KTK  +    AL       +    + ++N  L++RN+P   +L   
Sbjct: 121 NSIKVLEAFNFDAPKTKEFINLNNALGFEGKKSLYILPEANKNVYLSSRNLPKTTVLTYN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            I+ YD++   ++V  + AIE  ++  +
Sbjct: 181 EISSYDLVHAGEIVFLEGAIEKFQENLR 208


>gi|257069507|ref|YP_003155762.1| 50S ribosomal protein L4 [Brachybacterium faecium DSM 4810]
 gi|256560325|gb|ACU86172.1| LSU ribosomal protein L4P [Brachybacterium faecium DSM 4810]
          Length = 312

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + V +  G+  G + +   IF ++    ++ +V+  Q    R G  K+K R+EV   G 
Sbjct: 6   TVDVLDPAGKKSGSVELPASIFDVQTNVPLIHQVVVAQQAAARQGTHKAKTRAEVRGGGK 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +  
Sbjct: 66  KPWKQKGTGRARQGSLRAPQFTGGGTVHGPVPRDYSQRTPKKMKAAALRGALSDRARNGR 125

Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+ + L      TK +      +     L++   + D    L++RN+P  ++L    +
Sbjct: 126 VHVVSSLLEGDVASTKAVRQTLSNVSDRRHLLVVVRRDDDLGALSSRNLPTTHVLYADQV 185

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD++    +V +  A+E  
Sbjct: 186 NTYDVMLSDDVVFTAGALEDF 206


>gi|332170560|gb|AEE19815.1| ribosomal protein L4/L1e [Krokinobacter diaphorus 4H-3-7-5]
          Length = 209

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 107/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G    +S+ +F ++P +  +   ++     +R G  KSK R+E+A +
Sbjct: 1   MKIAVVDIKGKETGRKADLSDAVFGIEPNKHAVYLDVKQFLANQRQGTHKSKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K ++ LA R AL+ K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKGLKRLARRSALTIKAND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I VI++      KTK  V   +AL   +   +I   + + N  L++RN+    ++   
Sbjct: 121 NAITVIEDFNLDAPKTKDFVNVLKALGLENKKSLIVLGESNNNVYLSSRNLKTAKVVKSS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y I+  + +V  + ++E +E   
Sbjct: 181 ELSTYGIMNANNVVFLEGSLEGVEANL 207


>gi|308235495|ref|ZP_07666232.1| 50S ribosomal protein L4 [Gardnerella vaginalis ATCC 14018]
 gi|311115166|ref|YP_003986387.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis ATCC
           14019]
 gi|310946660|gb|ADP39364.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis ATCC
           14019]
          Length = 221

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 7/207 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQG------ILARVLRWQSWRKRIGCSKSKGRS 55
           + L+V +  G   G +    +IF +   +       ++ +V+  Q    R G    K R+
Sbjct: 4   VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115
            V+  G K + QKGTGRAR  S    Q+  GG   GPVP       PKK+++ ALR+ALS
Sbjct: 63  NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYALS 122

Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175
           D+  +  I V+D  +     TK  V     +       +   + + N  ++ RNIP +++
Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKAAVAALTPVTKDQFTTVVLSRENINEWMSVRNIPTVHV 182

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202
           +    +N YD++    +V SK   EA 
Sbjct: 183 IFADQLNTYDVITAQYVVFSKEGFEAF 209


>gi|159904218|ref|YP_001551562.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9211]
 gi|226730707|sp|A9BCP6|RL4_PROM4 RecName: Full=50S ribosomal protein L4
 gi|159889394|gb|ABX09608.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9211]
          Length = 211

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V +  G++ G  ++   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MANCVVLDWQGQEAGKATLDLKVAKETTAVDLIHRAVVRQQAHSRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSFSLGMNRKERRLALRTALMARIND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             I+       K  KT+ +V             ++I   Q       + RNI  + ++  
Sbjct: 121 LMIVQDFGTALKVPKTREIVEALSRFGIADDAKVLIILAQPSEIIIRSVRNIERVKVIGA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LV+ + A+  +++ +
Sbjct: 181 DQLNVFDLLNANSLVIGEKALSTIKEVY 208


>gi|209521384|ref|ZP_03270097.1| ribosomal protein L4/L1e [Burkholderia sp. H160]
 gi|295677931|ref|YP_003606455.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1002]
 gi|307731254|ref|YP_003908478.1| 50S ribosomal protein L4/L1e [Burkholderia sp. CCGE1003]
 gi|323527601|ref|YP_004229754.1| 50S ribosomal protein L4/L1e [Burkholderia sp. CCGE1001]
 gi|209498204|gb|EDZ98346.1| ribosomal protein L4/L1e [Burkholderia sp. H160]
 gi|295437774|gb|ADG16944.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1002]
 gi|307585789|gb|ADN59187.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1003]
 gi|323384603|gb|ADX56694.1| ribosomal protein L4/L1e [Burkholderia sp. CCGE1001]
          Length = 206

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++   +S S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNANGQEGAGVSASDVVFGRDYNEALIHQVVVAYQANARSGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D L  +  KTK L  +F+A+   +++++    +D N  LA+RN+ ++ ++  + 
Sbjct: 121 GRISVVDELTLEAPKTKLLAEKFKAMG-LDSVLVITDTVDENLYLASRNLAHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLITKAAVAQIEELL 205


>gi|113460209|ref|YP_718266.1| 50S ribosomal protein L4 [Haemophilus somnus 129PT]
 gi|122945126|sp|Q0I162|RL4_HAES1 RecName: Full=50S ribosomal protein L4
 gi|112822252|gb|ABI24341.1| LSU ribosomal protein L4P [Haemophilus somnus 129PT]
          Length = 200

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + + L++A +I    LD N  LAARN+  +++  VQ I
Sbjct: 116 RLVVVEKFEIDAPKTKVLVQKLKDMALTDA-LIITASLDENLFLAARNLYKVDVRDVQAI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+ F
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEMF 199


>gi|223944103|gb|ACN26135.1| unknown [Zea mays]
          Length = 197

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/188 (37%), Positives = 113/188 (60%), Gaps = 1/188 (0%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +  D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K Y QKGTG+ARH + 
Sbjct: 3   LDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHGTL 62

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138
             +QFRGG    GP P      L KKVR L L+ ALS +     +++ ++L     KTK 
Sbjct: 63  RGAQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKTKN 122

Query: 139 LVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197
           +V   R +D S  + ++DG  +D+  +LA +N+  +N+LP  G+NVY IL+   LV++++
Sbjct: 123 IVQYIRQMDDSKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRA 182

Query: 198 AIEALEDR 205
           AI  + +R
Sbjct: 183 AINRIVER 190


>gi|91785464|ref|YP_560670.1| 50S ribosomal protein L4 [Burkholderia xenovorans LB400]
 gi|187925615|ref|YP_001897257.1| 50S ribosomal protein L4 [Burkholderia phytofirmans PsJN]
 gi|296163320|ref|ZP_06846081.1| ribosomal protein L4/L1e [Burkholderia sp. Ch1-1]
 gi|123062495|sp|Q13TH1|RL4_BURXL RecName: Full=50S ribosomal protein L4
 gi|226730632|sp|B2T750|RL4_BURPP RecName: Full=50S ribosomal protein L4
 gi|91689418|gb|ABE32618.1| LSU ribosomal protein L4P [Burkholderia xenovorans LB400]
 gi|187716809|gb|ACD18033.1| ribosomal protein L4/L1e [Burkholderia phytofirmans PsJN]
 gi|295886459|gb|EFG66316.1| ribosomal protein L4/L1e [Burkholderia sp. Ch1-1]
          Length = 206

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++   +S S+ +F     + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLNANGQEGAGVSASDVVFGRDYNEALIHQVVVAYQANARSGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D L  +  KTK L  +F+A+   +++++    +D N  LA+RN+ ++ ++  + 
Sbjct: 121 GRISVVDELTLEAPKTKLLAEKFKAMG-LDSVLVITDTVDENLYLASRNLAHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKILITKAAVAQIEELL 205


>gi|148554273|ref|YP_001261855.1| 50S ribosomal protein L4 [Sphingomonas wittichii RW1]
 gi|166199910|sp|A5V601|RL4_SPHWW RecName: Full=50S ribosomal protein L4
 gi|148499463|gb|ABQ67717.1| LSU ribosomal protein L4P [Sphingomonas wittichii RW1]
          Length = 208

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/206 (41%), Positives = 126/206 (61%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V+ LD +  G I +++++FA++P+  ILARV++WQ   +R     ++ RS+VA TG
Sbjct: 1   MKVKVQTLDAKASGDIELNDEVFAVEPRADILARVVQWQLHNRRAPARAARERSDVARTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG G ARH  +    F GGGKA GP   +   +L KKVR+L L+ ALS K    
Sbjct: 61  KKFGRQKGGGTARHGDRRAPVFIGGGKAHGPRARVFESSLNKKVRALGLKMALSSKAKDG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQG 180
            ++V+D L  K+ KTK L+ +   L      ++   + +D  FQLA+ NI  IN+LP  G
Sbjct: 121 KLVVVDTLELKDAKTKALIAKIGKLGFGATALVIDGEAVDNGFQLASSNIHTINVLPAIG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            NVYDIL+   LVL+++A+E LE RF
Sbjct: 181 ANVYDILKHETLVLTRAAVEKLEARF 206


>gi|289548390|ref|YP_003473378.1| ribosomal protein L4/L1e [Thermocrinis albus DSM 14484]
 gi|289182007|gb|ADC89251.1| ribosomal protein L4/L1e [Thermocrinis albus DSM 14484]
          Length = 197

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 2/194 (1%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
             + + EDIF ++ ++ +L   ++WQ   +R G   +K R+EV Y+G K+  QKGTG AR
Sbjct: 2   SDLQLREDIFGVEVKKHVLWEAVKWQLAARRQGTHSTKTRAEVNYSGRKILPQKGTGNAR 61

Query: 75  HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KE 133
           H  +    F GGG A GP P    + LPKKVR LALR ALS K     ++++D +   + 
Sbjct: 62  HGERGAPIFVGGGVAHGPKPRDYYYTLPKKVRKLALRMALSSKAKEGKVLLVDKVEIGEV 121

Query: 134 CKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
            KTK  V   +  ++    +++   Q D     + RNIP   +LPV G+NVYDIL    L
Sbjct: 122 PKTKKAVEFLKTHNVADQKVLLIVPQKDEVVIKSFRNIPTAKVLPVDGLNVYDILWADWL 181

Query: 193 VLSKSAIEALEDRF 206
           ++ K A+  + +R 
Sbjct: 182 IIDKMALGKIYERL 195


>gi|121592713|ref|YP_984609.1| 50S ribosomal protein L4 [Acidovorax sp. JS42]
 gi|222109494|ref|YP_002551758.1| 50S ribosomal protein l4 [Acidovorax ebreus TPSY]
 gi|166234627|sp|A1W2Q8|RL4_ACISJ RecName: Full=50S ribosomal protein L4
 gi|254803732|sp|B9MB74|RL4_DIAST RecName: Full=50S ribosomal protein L4
 gi|120604793|gb|ABM40533.1| LSU ribosomal protein L4P [Acidovorax sp. JS42]
 gi|221728938|gb|ACM31758.1| ribosomal protein L4/L1e [Acidovorax ebreus TPSY]
          Length = 206

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    + V E +F  +  + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNEQGQAASKVDVPETVFDRQYNEDLIHQIVVAYQANARQGTRAQKDREQVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFSQKINKKMYRAGMASILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L     KTK L  +F+A++L + ++I   ++D N  LA+RN+ N+ +   + 
Sbjct: 121 GRLAVVDSLKLDTPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVTEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI+ L++ F
Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205


>gi|298373699|ref|ZP_06983688.1| ribosomal protein L4/L1 family protein [Bacteroidetes oral taxon
           274 str. F0058]
 gi|298274751|gb|EFI16303.1| ribosomal protein L4/L1 family protein [Bacteroidetes oral taxon
           274 str. F0058]
          Length = 212

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 108/208 (51%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E  V N+ G++ G  + +++ +F ++P    +   ++     KR G  KSK RSE+A +
Sbjct: 1   MEAKVFNIQGKETGRTVQLNDSVFGIEPNNHAIYLDVKQYMANKRQGTHKSKERSEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KK++ LA + A + K   
Sbjct: 61  TKKLGRQKGGGGARRGDINSPLLHGGARVFGPKPRDYSFKLNKKLKQLARKSAFATKAAE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V            +++   + ++N  L++RN+P +N++   
Sbjct: 121 NAIVVVEDFNFEAPKTKDFVAITNNLKINDKKILLILGENNKNIFLSSRNLPKVNVITTD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            ++ Y IL C+ L++S+ A+  ++  FK
Sbjct: 181 ELSTYKILDCAVLLISEKAVAGIDQHFK 208


>gi|260061898|ref|YP_003194978.1| 50S ribosomal protein L4 [Robiginitalea biformata HTCC2501]
 gi|88786031|gb|EAR17200.1| 50S ribosomal protein L4 [Robiginitalea biformata HTCC2501]
          Length = 209

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 108/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G    +++D+F ++P +  +   ++     +R G  K+K R+E+A +
Sbjct: 1   MKVAVLDIKGKETGRKAELADDVFKIEPNEHAIYLDVKQYLAHQRQGTHKAKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K V+ LA + ALS K  +
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPIFRGGGRIFGPRPKDYTQKLNKNVKRLARKSALSLKSQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I V+++      KT+  +   +AL       +I   + + +  L++RN     ++   
Sbjct: 121 NAITVVEDFSFDTPKTRDFIDVLKALGLEDKKSLIVLGEQNNSVYLSSRNFKGAEVVTNT 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y I+  + +VL++ A+E +    
Sbjct: 181 ELSTYKIMNANNVVLTEGALEGIAANL 207


>gi|315606503|ref|ZP_07881518.1| ribosomal protein L4/L1 family protein [Prevotella buccae ATCC
           33574]
 gi|315251909|gb|EFU31883.1| ribosomal protein L4/L1 family protein [Prevotella buccae ATCC
           33574]
          Length = 210

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 112/208 (53%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M+E+SV ++ G++ G  ++++E I+ L+P + +L   ++     +R G +KSK RSE+  
Sbjct: 1   MMEVSVLDIKGQETGRKVTLNESIYGLEPNEHVLYLDVKQYLANQRQGTAKSKERSEING 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           +  K+  QKG G AR          GGG+ FGP P      L KKV+ LA + ALSDK  
Sbjct: 61  STRKLGRQKGGGGARRGDIKSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKLALSDKAQ 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            N I+V+++   +  KTK  +   +         ++     ++N  L+ARN+    ++P 
Sbjct: 121 ENAIVVVEDFDIETPKTKDFINIAKNLKVDGRKTLLLLPTANKNVYLSARNLQRTEVMPA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +N Y +L    LV+++SA++ +++  
Sbjct: 181 AMLNSYKVLNADVLVIAESALKVIDEIL 208


>gi|223041818|ref|ZP_03612008.1| 50S ribosomal protein L4 [Actinobacillus minor 202]
 gi|223017387|gb|EEF15808.1| 50S ribosomal protein L4 [Actinobacillus minor 202]
          Length = 200

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + L L++A +I    +D N  LAARN+  +++  VQ I
Sbjct: 116 RLVVVEKFEIDAPKTKALVQKLKDLALNDA-LIITANVDENLFLAARNLYKVDVRDVQAI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199


>gi|15599458|ref|NP_252952.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PAO1]
 gi|107103775|ref|ZP_01367693.1| hypothetical protein PaerPA_01004846 [Pseudomonas aeruginosa PACS2]
 gi|116052297|ref|YP_788857.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152987454|ref|YP_001346224.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PA7]
 gi|254237125|ref|ZP_04930448.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa C3719]
 gi|254242916|ref|ZP_04936238.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 2192]
 gi|296387181|ref|ZP_06876680.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PAb1]
 gi|313111416|ref|ZP_07797221.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 39016]
 gi|46396659|sp|Q9HWD6|RL4_PSEAE RecName: Full=50S ribosomal protein L4
 gi|122261446|sp|Q02T79|RL4_PSEAB RecName: Full=50S ribosomal protein L4
 gi|166199845|sp|A6UZI9|RL4_PSEA7 RecName: Full=50S ribosomal protein L4
 gi|9950479|gb|AAG07650.1|AE004841_28 50S ribosomal protein L4 [Pseudomonas aeruginosa PAO1]
 gi|115587518|gb|ABJ13533.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169056|gb|EAZ54567.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa C3719]
 gi|126196294|gb|EAZ60357.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 2192]
 gi|150962612|gb|ABR84637.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa PA7]
 gi|310883723|gb|EFQ42317.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa 39016]
          Length = 200

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 3/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            N++G     I VSE  F  +  + ++ + +       R G    K RSEV+  G K + 
Sbjct: 3   LNVNGAQA--IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++    + ++V+
Sbjct: 61  QKGTGRARAGTIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVV 120

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
            +      KTK LV +   L L +  +I    +D N  LAARN+ ++++  VQG +   +
Sbjct: 121 ADFAVDAPKTKGLVAKLDTLGLKDV-LIVTDGVDENLYLAARNLAHVDVRDVQGSDPVSL 179

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA++  E+  
Sbjct: 180 IAYDKVLVTVSAVKKFEELL 199


>gi|260592764|ref|ZP_05858222.1| ribosomal protein L4/L1 family protein [Prevotella veroralis F0319]
 gi|260535295|gb|EEX17912.1| ribosomal protein L4/L1 family protein [Prevotella veroralis F0319]
          Length = 209

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  ++++E+IF ++P   +L   ++     +R G +KSK RSE A +
Sbjct: 1   MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + AL+ K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  V   +     S  +++   ++++N  L+ARN+    ++   
Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    +V+++++++ +++  
Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDEIL 207


>gi|293391696|ref|ZP_06636030.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952230|gb|EFE02349.1| 50S ribosomal protein L4 [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 200

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + L L +  +I    LD N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFEIDAPKTKVLVQKLKELALEDV-LIITASLDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFNKVVVTVDAVKQIEEML 199


>gi|300114735|ref|YP_003761310.1| 50S ribosomal protein L4/l1e [Nitrosococcus watsonii C-113]
 gi|299540672|gb|ADJ28989.1| ribosomal protein L4/L1e [Nitrosococcus watsonii C-113]
          Length = 206

 Score =  173 bits (438), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 2/203 (0%)

Query: 2   IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V++L    + G + +S+ +FA    + ++ +V+     + R G    K RSEV   
Sbjct: 1   MELPVQSLSKNSETGTVQLSDAVFAQHFNESLIHQVITAYLAKARAGTRAHKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  +     +RGGGK F   P      + KK+   A+R  LS+    
Sbjct: 61  GAKPFRQKGTGRARAGTIRSPLWRGGGKVFAAKPGDYSQKVNKKMYRAAMRSILSELVRQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + ++D ++  + KTK L    +++   N  ++   + DRN +L+ARNIP + +  V  
Sbjct: 121 DRLRMVDKIILSKPKTKDLAKLLKSITWRNV-LVVVAEDDRNLELSARNIPTVAISNVGR 179

Query: 181 INVYDILRCSKLVLSKSAIEALE 203
           ++  +++R   +++++ AI   E
Sbjct: 180 VSPVELIRFDGVLITEDAIRCFE 202


>gi|221194347|ref|ZP_03567404.1| ribosomal protein L4/L1 family protein [Atopobium rimae ATCC 49626]
 gi|221185251|gb|EEE17641.1| ribosomal protein L4/L1 family protein [Atopobium rimae ATCC 49626]
          Length = 208

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  ++N +G+  G   +S D++ ++P   ++ +V+  Q+   R G   +K R EV+  
Sbjct: 1   MSKYEIKNTEGKKVGDADLSADVYGIEPNIPVVHQVVTCQAASLRQGTHSTKNRHEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    Q+ GGG  FGP P      +  K+  LA+R  LS K   
Sbjct: 61  GVKPYRQKGTGRARQGSIRAGQWTGGGVIFGPTPRSHARRVNSKMVKLAMRSVLSGKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++++++DNL      TK  V   +AL   +  + +     D N  L+ RN+  +++  V 
Sbjct: 121 SELVLVDNLEFDTPSTKQAVAVLKALGLENKRVTLLVPDDDINTYLSFRNLKKVSIFGVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
                 ++  + LV+S    + L +  
Sbjct: 181 EATTRSLIDNAALVMSADIAKQLGEVL 207


>gi|258648158|ref|ZP_05735627.1| ribosomal protein L4/L1 family protein [Prevotella tannerae ATCC
           51259]
 gi|260852039|gb|EEX71908.1| ribosomal protein L4/L1 family protein [Prevotella tannerae ATCC
           51259]
          Length = 209

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N+ GED G    ++E +F ++P    +   ++     +R G +KSK RSE++ +
Sbjct: 1   MEISVFNIKGEDTGRKAVLNEAVFGIEPNDHAIYLDVKQYLAAQRQGTAKSKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GG + FGP P      L KK+++LA R ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGARVFGPRPRNYAFKLNKKLKALARRSALSYKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  V            +++   + ++N  L+ARN+    L   +
Sbjct: 121 NSIVVLEDFTMETPKTKAFVEILNNLKVSEKKVLVILPEANKNVFLSARNLEGAKLAIAK 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN Y++L    LV+++ ++E ++   
Sbjct: 181 DINTYNVLDAGALVITERSLEDIDAVL 207


>gi|268316409|ref|YP_003290128.1| 50S ribosomal protein L4/L1e [Rhodothermus marinus DSM 4252]
 gi|262333943|gb|ACY47740.1| ribosomal protein L4/L1e [Rhodothermus marinus DSM 4252]
          Length = 214

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V  LDG + G  +++   +F ++P   +L   ++     +R G  K K R+E A++
Sbjct: 1   MELQVYRLDGSESGRTVTLDPTVFEIEPNDHVLWLDVKRIEANRRQGTHKVKNRAENAHS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTG AR         RGGG A GP P      + +K + LA R AL+ K  +
Sbjct: 61  TRKLYRQKGTGYARAGDAKSPIRRGGGTAHGPQPRSYELKVNRKTQRLARRSALTYKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I V+++   ++  T+ L+    A       +++   + +    L++RN+P + +L  +
Sbjct: 121 EAIRVVEDFTFEQPSTRRLLEVLAAQGLADRKVLLLTGEYNPALYLSSRNLPKVRVLEAR 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
             +  D+L    L++ +SA+E L    +
Sbjct: 181 NASTRDLLDAQVLLMQESAVEVLNRMLR 208


>gi|206891119|ref|YP_002249244.1| ribosomal protein L4/L1 family [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|226731439|sp|B5YG46|RL4_THEYD RecName: Full=50S ribosomal protein L4
 gi|206743057|gb|ACI22114.1| ribosomal protein L4/L1 family [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 210

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MIE+ +R+++    G   V + +F     + ++   +      +R G   +K RSEV+  
Sbjct: 1   MIEIEIRDINNNIVGKKEVPDIVFNNSASESVVHTAVVAYMANQRQGTHCTKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRARH S     +R GG  FGP P      LPK+++  AL  AL+ K+  
Sbjct: 61  GKKPWRQKHTGRARHGSIRSPLWRKGGIVFGPKPRDYYIQLPKQMKDTALFKALTMKYRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I+++DNL     KTK +V   +      ++++I   + D    L+ARNIP I ++  +
Sbjct: 121 NEILLLDNLSLNRIKTKDMVEILKNLQLEESSVLIALPEKDEKVLLSARNIPYIGVVRAE 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +    K+V + + ++ L
Sbjct: 181 DLNAYHVAMFDKVVFTVAGLDKL 203


>gi|121608244|ref|YP_996051.1| 50S ribosomal protein L4 [Verminephrobacter eiseniae EF01-2]
 gi|166199922|sp|A1WHC6|RL4_VEREI RecName: Full=50S ribosomal protein L4
 gi|121552884|gb|ABM57033.1| LSU ribosomal protein L4P [Verminephrobacter eiseniae EF01-2]
          Length = 206

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    + V E +F  +  + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNDQGQGASRLDVPETVFGREYNEALVHQIVVAYQANARQGTRAQKDRGQVRHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGG+ F  +P     H + KK+    +    S     
Sbjct: 61  RKPFKQKGTGNARAGMTSSPLWRGGGRIFPNMPDENFTHKINKKMYRAGMSAIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++++     KT+ L  +F+A++L + ++I   ++D N  LAARN+ N+ ++  + 
Sbjct: 121 GRLAVVESIKLDSPKTRVLADKFKAMNLQSVMVI-ADEVDENLYLAARNLVNVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++R  K++++K AI+ L++ F
Sbjct: 180 ADPVSLVRFKKVLVTKGAIDKLQEMF 205


>gi|163783268|ref|ZP_02178261.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881376|gb|EDP74887.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 199

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 113/195 (57%), Gaps = 2/195 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G I V +++F +K ++ +L  V++WQ   +R G   +K R EV Y+G K+  QKGTG 
Sbjct: 2   KIGRIEVKDEVFNVKVKKHVLWEVVKWQLASRRQGTHSTKTRGEVNYSGRKILPQKGTGN 61

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS- 131
           ARH  +  +   GGG A GP P    ++LPKKVR LAL+ ALSDK  + +++++D +   
Sbjct: 62  ARHGDRGANILVGGGVAHGPRPRDYSYSLPKKVRKLALKMALSDKAQNKNVVIVDKIEIG 121

Query: 132 KECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
              KTK  +   +   +    +++   + D     + RN+PN  +LPV+G+NVYDIL   
Sbjct: 122 DTPKTKKALEFLKKKKIDSEKVLVVTPEKDELIMKSFRNLPNAKVLPVEGLNVYDILWSD 181

Query: 191 KLVLSKSAIEALEDR 205
           KLV+ K A+E +  R
Sbjct: 182 KLVILKGALEGIYKR 196


>gi|220913431|ref|YP_002488740.1| ribosomal protein L4/L1e [Arthrobacter chlorophenolicus A6]
 gi|219860309|gb|ACL40651.1| ribosomal protein L4/L1e [Arthrobacter chlorophenolicus A6]
          Length = 206

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 1/188 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  +IF ++    +L +V+  Q    R G  K+K R+EV+  G K + QKGTGRAR 
Sbjct: 6   QVDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQ 65

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKEC 134
            S       GGG   GP P       PKK+ + ALR ALSD+  +  I V+ D +   + 
Sbjct: 66  GSIRAPHMTGGGVVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVADLVEGTKP 125

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
             K  +   R +     L++   + +    L+ RN+  +++L    +N YD+L    +V 
Sbjct: 126 SAKTALATLRGVSDRKNLLVVIERANDVAALSVRNLAGVHVLYADQLNTYDVLVSDDVVF 185

Query: 195 SKSAIEAL 202
           +K+A EA 
Sbjct: 186 TKAAYEAF 193


>gi|218889410|ref|YP_002438274.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa LESB58]
 gi|226730709|sp|B7V645|RL4_PSEA8 RecName: Full=50S ribosomal protein L4
 gi|218769633|emb|CAW25393.1| 50S ribosomal protein L4 [Pseudomonas aeruginosa LESB58]
          Length = 200

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 3/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            N+ G     I VSE  F  +  + ++ + +       R G    K RSEV+  G K + 
Sbjct: 3   LNVSGAQA--IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++    + ++V+
Sbjct: 61  QKGTGRARAGTIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVV 120

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
            +      KTK LV +   L L +  +I    +D N  LAARN+ ++++  VQG +   +
Sbjct: 121 ADFAVDAPKTKGLVAKLDTLGLKDV-LIVTDGVDENLYLAARNLAHVDVRDVQGSDPVSL 179

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA++  E+  
Sbjct: 180 IAYDKVLVTVSAVKKFEELL 199


>gi|300690161|ref|YP_003751156.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Ralstonia solanacearum PSI07]
 gi|299077221|emb|CBJ49847.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Ralstonia solanacearum PSI07]
          Length = 206

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   DG+    +S S ++F     + ++ +++       R G  K K R EV +T 
Sbjct: 1   MELKLLQADGQLGTGVSASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R   S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D    +  KTK L  +FRA+   +++++    LD N  LA+RN+ ++ ++  + 
Sbjct: 121 GRINVVDGFGIEAPKTKLLADKFRAMG-LDSVLVITDNLDENLYLASRNLAHVLVVEARH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++   K++++K+A+  +E+  K
Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206


>gi|156312293|ref|XP_001617803.1| hypothetical protein NEMVEDRAFT_v1g156663 [Nematostella vectensis]
 gi|156195877|gb|EDO25703.1| predicted protein [Nematostella vectensis]
          Length = 209

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 110/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G+D G  + +S ++F ++P    +   ++     KR G  KSK R+E+  +
Sbjct: 1   MKVAVLDITGKDTGRKVELSSEVFGIEPNSHAIYLDVKQHLANKRQGTHKSKERAEITGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K ++ LA + ALS +   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRNYSFKLNKNLKRLARKSALSTQAKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++V++N      KTK  V   +AL   +   +    + + N  L++RN+ +  ++   
Sbjct: 121 NNLVVVENFDFDAPKTKNFVNVLKALGLENKKSLFVLAESNNNVYLSSRNLKSSKVVNAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y +L  +K+V  + AIE +E  F
Sbjct: 181 ELSTYSVLNANKVVFMEGAIEGVEANF 207


>gi|284040620|ref|YP_003390550.1| ribosomal protein L4/L1e [Spirosoma linguale DSM 74]
 gi|283819913|gb|ADB41751.1| ribosomal protein L4/L1e [Spirosoma linguale DSM 74]
          Length = 209

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N  GED G  +++ E++F+++P Q  +   ++     +R G  K+K R+E A++
Sbjct: 1   MEVIVYNSKGEDTGKKVTLPEEVFSIEPNQHAIYLDVKQYLANQRQGTHKAKERAENAHS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG  FGP P      L KKV++LA + A + K  +
Sbjct: 61  TRKLKKQKGTGGARAGSAKSPVFVGGGTIFGPRPRDYSFKLNKKVKALARQSAYAVKAKA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I VID++  +  +TK  +             ++    ++ N  L++RN+    +    
Sbjct: 121 EKISVIDSIALEAPRTKDYIQFLNDLNVTGKKTLLILPDVNTNVVLSSRNVQKAKVTTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALE 203
            +N YD++   +L++S+ A+  ++
Sbjct: 181 QVNTYDLMNADQLLISEEALSTIQ 204


>gi|119773355|ref|YP_926095.1| 50S ribosomal protein L4 [Shewanella amazonensis SB2B]
 gi|166199860|sp|A1S219|RL4_SHEAM RecName: Full=50S ribosomal protein L4
 gi|119765855|gb|ABL98425.1| LSU ribosomal protein L4P [Shewanella amazonensis SB2B]
          Length = 201

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        + VSE  F     + ++ +V+   +   R G    K R+E+  TG
Sbjct: 1   MELVLKD----ASRALEVSETTFGRDFNEALVHQVVVAYAANARQGTRAQKTRAEITGTG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +RGGG  F          + KK+   AL   LS+     
Sbjct: 57  KKPWRQKGTGRARAGGIKGPLWRGGGVTFAAKTQDHSQKVNKKMYRGALMSILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK L  + +A+DL +  +I   ++D N  LAARN+  +++  V G+
Sbjct: 117 RLVVVEQFAVEAPKTKELKAKLKAMDLEDV-LIVTAEVDENLFLAARNLYKVDVRDVAGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++  +K++++  A++ +E+  
Sbjct: 176 DPVSLIAFNKVLVTADAVKQIEEML 200


>gi|240947883|ref|ZP_04752323.1| 50S ribosomal protein L4 [Actinobacillus minor NM305]
 gi|240297845|gb|EER48281.1| 50S ribosomal protein L4 [Actinobacillus minor NM305]
          Length = 200

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + L L++A +I    +D N  LAARN+  +++  VQ I
Sbjct: 116 RLVVVEKFEIDAPKTKVLVQKLKDLALTDA-LIITANVDENLFLAARNLYKVDVRDVQAI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199


>gi|225849547|ref|YP_002729712.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643372|gb|ACN98422.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 208

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V N   E  G +++ EDIF  +  QG +  V++W    KR G +K K R+EVA + 
Sbjct: 1   MEFNVVNNKNEIVGKVNLKEDIFQTQVNQGTVWEVIKWHLATKRAGTAKVKTRAEVAGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRARH     + F GGG A GP P    +ALPKKVR   L+  L+ K  +N
Sbjct: 61  RKIYPQKGTGRARHGDIKANIFVGGGVAHGPHPRDYYYALPKKVRKKVLKGVLTYKLNNN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +++V+++    + KTK  V   +     ++ +++   +   N   + RNIP + +L  +G
Sbjct: 121 ELIVVEDFNFDQPKTKNAVEVLKNFGLENSKVLLVLPEKLENVIKSFRNIPKVKILVSEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YDIL   K+++ KSA+E +++R 
Sbjct: 181 LNSYDILNSEKVIIFKSALEKIQERL 206


>gi|256420660|ref|YP_003121313.1| ribosomal protein L4/L1e [Chitinophaga pinensis DSM 2588]
 gi|256035568|gb|ACU59112.1| ribosomal protein L4/L1e [Chitinophaga pinensis DSM 2588]
          Length = 212

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 4/207 (1%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++ + N +G+  G  I + E+IF ++P   ++   ++     +R G  K K R+EV   
Sbjct: 1   MQVDILNKEGKKTGRTIELPEEIFGVEPNNHVIYLAVKQYLAAQRQGTHKVKTRAEVKGA 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTG +R  +     ++GGG  FGP P      L +KV+ LA   ALS K   
Sbjct: 61  SRKLHKQKGTGGSRKGNIRNPLYKGGGTIFGPKPHKYDIKLNRKVKDLAKISALSTKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
           N I+V+++L     KTK         +        +    + + N  L+ RNIP ++ + 
Sbjct: 121 NSIIVVEDLTLDTPKTKAFAGILNNLKVNVSGRKTLFVLPEYNDNVYLSLRNIPTVDSVM 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALED 204
           +  IN Y+I+  + LV ++SA +   +
Sbjct: 181 LSDINTYEIMNSNVLVFTESAAKIFTE 207


>gi|83748150|ref|ZP_00945177.1| LSU ribosomal protein L1E (= L4P) [Ralstonia solanacearum UW551]
 gi|207721897|ref|YP_002252335.1| 50s ribosomal protein l4 [Ralstonia solanacearum MolK2]
 gi|207723096|ref|YP_002253501.1| 50s ribosomal protein l4 [Ralstonia solanacearum IPO1609]
 gi|300702781|ref|YP_003744382.1| 50S ribosomal protein L4 [Ralstonia solanacearum CFBP2957]
 gi|83725118|gb|EAP72269.1| LSU ribosomal protein L1E (= L4P) [Ralstonia solanacearum UW551]
 gi|206587065|emb|CAQ17649.1| 50s ribosomal protein l4 [Ralstonia solanacearum MolK2]
 gi|206588289|emb|CAQ18987.1| 50s ribosomal protein l4 [Ralstonia solanacearum IPO1609]
 gi|299070443|emb|CBJ41738.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Ralstonia solanacearum CFBP2957]
          Length = 206

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   DG+    ++ S ++F     + ++ +++       R G  K K R EV +T 
Sbjct: 1   MELKLLQADGQLGAGVAASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R   S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D    +  KTK L  +FRA+   +++++    +D N  LA+RN+ ++ ++  + 
Sbjct: 121 GRINVVDGFGIEAPKTKLLADKFRAMG-LDSVLVITDNMDENLYLASRNLAHVFVVEARH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++   ++   K++++K+A+  +E+  K
Sbjct: 180 VDPLSLVHYKKVLVTKAAVAQIEELLK 206


>gi|331699175|ref|YP_004335414.1| 50S ribosomal protein L4/L1e [Pseudonocardia dioxanivorans CB1190]
 gi|326953864|gb|AEA27561.1| ribosomal protein L4/L1e [Pseudonocardia dioxanivorans CB1190]
          Length = 308

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/204 (31%), Positives = 100/204 (49%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V+N  GE  G + +   +F +     ++ +V+  Q    R G   +K R EV   
Sbjct: 1   MSSVDVKNAAGEKDGSVELPGHVFDVTANIPLMHQVVVAQQAAARQGTHDTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+   
Sbjct: 61  GRKPYRQKGTGRARQGSVRAPQFTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARG 120

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ-LAARNIPNINLLPV 178
             + V+  +V+     TK       A+  + A ++     D +   L+ RN+P ++L+  
Sbjct: 121 GRVHVVSTIVTGDTPSTKAARQALEAVVGAEARVLAVVDRDDSVNLLSLRNLPQVHLIAP 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N YD+L    ++ + +A+EA 
Sbjct: 181 DQLNTYDVLVNDDVLFTSAALEAF 204


>gi|163752916|ref|ZP_02160040.1| 50S ribosomal protein L4 [Kordia algicida OT-1]
 gi|161326648|gb|EDP97973.1| 50S ribosomal protein L4 [Kordia algicida OT-1]
          Length = 209

 Score =  172 bits (437), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V +++G++ G   ++S+ +FA++P    +   ++     +R G  K+K R+E+A +
Sbjct: 1   MEVAVLDINGKETGRKANLSDAVFAIEPNDHAVYLDVKQYLANQRQGTHKAKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L K V+ LA + AL+ K  S
Sbjct: 61  TRKIKKQKGTGTARAGSIKNPLFKGGGRVFGPRPRSYAQKLNKNVKRLARKSALTLKAKS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+VI++      KTK  +   +AL   S   +      + N  L++RN+    +L   
Sbjct: 121 ESIIVIEDFDFDAPKTKNFINVLKALGLDSKKSLFVLGDSNNNVYLSSRNLKTSEVLTSS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y I+  + +V+ + A+E +E   
Sbjct: 181 ELSTYKIVNANSIVVFEGALEGIESNL 207


>gi|170718247|ref|YP_001785267.1| 50S ribosomal protein L4 [Haemophilus somnus 2336]
 gi|189029507|sp|B0UX14|RL4_HAES2 RecName: Full=50S ribosomal protein L4
 gi|168826376|gb|ACA31747.1| ribosomal protein L4/L1e [Haemophilus somnus 2336]
          Length = 200

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK LV + + + L++A +I    LD N  LAARN+  +++  VQ I
Sbjct: 116 RLVVVEKFEIDVPKTKVLVQKLKDMALTDA-LIITASLDENLFLAARNLYKVDVRDVQAI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+ F
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEMF 199


>gi|113476578|ref|YP_722639.1| 50S ribosomal protein L4 [Trichodesmium erythraeum IMS101]
 gi|122964704|sp|Q110A8|RL4_TRIEI RecName: Full=50S ribosomal protein L4
 gi|110167626|gb|ABG52166.1| LSU ribosomal protein L4P [Trichodesmium erythraeum IMS101]
          Length = 212

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M++  V+N  GE+ G  +++  +   +    I+ R LR Q    R G + +K RSEV   
Sbjct: 1   MVDCVVKNWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGGG  FGP P    H + +K + LAL  A   +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRLALSTAFQSRSED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++   +    + KTK LV        D+   +++   +   N  L+ RNI  + ++  
Sbjct: 121 LIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKIILA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +N+YDIL   K++ + +AI  +++ +
Sbjct: 181 NNLNIYDILAADKIIATVTAIAKIQEVY 208


>gi|283782759|ref|YP_003373513.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis
           409-05]
 gi|283440975|gb|ADB13441.1| ribosomal protein L4/L1 family protein [Gardnerella vaginalis
           409-05]
          Length = 221

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 7/207 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQG------ILARVLRWQSWRKRIGCSKSKGRS 55
           + L+V +  G   G +    +IF +   +       ++ +V+  Q    R G    K R+
Sbjct: 4   VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115
            V+  G K + QKGTGRAR  S    Q+  GG   GPVP       PKK+++ ALR+ LS
Sbjct: 63  NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALRYVLS 122

Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175
           D+  +  I V+D  +     TK  V     +  +    +   + + N  ++ RNIP +++
Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202
           +    +N YD++    +V SK   EA 
Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209


>gi|302345075|ref|YP_003813428.1| 50S ribosomal protein L4 [Prevotella melaninogenica ATCC 25845]
 gi|302149373|gb|ADK95635.1| 50S ribosomal protein L4 [Prevotella melaninogenica ATCC 25845]
          Length = 209

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  ++++E+IF ++P   +L   ++     +R G +KSK RSE A +
Sbjct: 1   MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + AL+ K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  V   +     S  +++   ++++N  L+ARN+    ++   
Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    +V+++++++ +++  
Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDEIL 207


>gi|114778823|ref|ZP_01453630.1| 50S ribosomal protein L4 [Mariprofundus ferrooxydans PV-1]
 gi|114550954|gb|EAU53518.1| 50S ribosomal protein L4 [Mariprofundus ferrooxydans PV-1]
          Length = 207

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 2/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M E+++ N   ++ G   ++  +F L      + RV    +  +R G SK K RSEV+  
Sbjct: 1   MAEITIVNQSNKEVGKRELNPAVFGLDADAAFVHRVYAALASAQRGGTSKVKDRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119
           G K + QKGTGRAR  S   +Q+R GG A GP         + KK R  AL  ALSD   
Sbjct: 61  GKKPWKQKGTGRARAGSSRQAQWRHGGTAHGPSADTSFATRINKKERRRALCLALSDCLR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + V+D L   E KTK  V    AL   + LI+ G + +   +L+ RN+PN  ++   
Sbjct: 121 EGKLTVVDKLELAEIKTKAFVDTLGALGADSGLIVLG-ESNNAVELSGRNVPNTRIVLDG 179

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N++D+L+  ++VL+ +AI+ LE+R 
Sbjct: 180 QVNLHDLLKSKRVVLTSAAIDNLEERL 206


>gi|33866600|ref|NP_898159.1| 50S ribosomal protein L4 [Synechococcus sp. WH 8102]
 gi|46577186|sp|Q7U4J9|RL4_SYNPX RecName: Full=50S ribosomal protein L4
 gi|33633378|emb|CAE08583.1| 50S ribosomal protein L4 [Synechococcus sp. WH 8102]
          Length = 211

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  +R+  G++ G  ++   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MADCVIRDWQGKEAGKATLDLKVAKETTANDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARVED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KTK +        +     ++I   +     + + RN+  + L+  
Sbjct: 121 VTVVKDFGTSLEAPKTKEITDALGRLGIAADAKVLIVLTEPSDVVRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LVL + A+  +++ +
Sbjct: 181 NQLNVFDLLHANALVLGEDALATIQEVY 208


>gi|88803749|ref|ZP_01119273.1| 50S ribosomal protein L4 [Polaribacter irgensii 23-P]
 gi|88780482|gb|EAR11663.1| 50S ribosomal protein L4 [Polaribacter irgensii 23-P]
          Length = 209

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 110/203 (54%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G+D G  + +S+D+F ++P    +   ++     +R G  KSK R+E++ +
Sbjct: 1   MKVAVLDITGKDTGRKVELSKDVFGIEPNDHAIYLDVKQYLANQRQGTHKSKERAEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K ++ LA + ALS +   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFRGGGRMFGPRPRDYSFKLNKSLKRLARKSALSIQAKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++VI++   +  KTK  +   ++L+  +   +      + N  L++RN+    ++   
Sbjct: 121 ENVIVIEDFNFETPKTKNFLDVLKSLELDTRKSLFVLSNENANVYLSSRNLKKSKVIKAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +  Y +L  +KLV+++ ++E +
Sbjct: 181 ELYTYGVLNTNKLVITEGSLEEI 203


>gi|319761139|ref|YP_004125076.1| ribosomal protein l4/l1e [Alicycliphilus denitrificans BC]
 gi|330822997|ref|YP_004386300.1| 50S ribosomal protein L4/L1e [Alicycliphilus denitrificans K601]
 gi|317115700|gb|ADU98188.1| ribosomal protein L4/L1e [Alicycliphilus denitrificans BC]
 gi|329308369|gb|AEB82784.1| ribosomal protein L4/L1e [Alicycliphilus denitrificans K601]
          Length = 206

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    + V E +F  +  + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNEQGQAASKVDVPETVFDRQYNEDLIHQIVVAYQANARQGTRAQKDREQVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMAAILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L  +  KTK L  +F+A++L + ++I   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLKNVFVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI+ L++ F
Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205


>gi|325964165|ref|YP_004242071.1| 50S ribosomal protein L4P [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470252|gb|ADX73937.1| LSU ribosomal protein L4P [Arthrobacter phenanthrenivorans Sphe3]
          Length = 207

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 1/188 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  +IF ++    +L +V+  Q    R G  K+K R+EV+  G K + QKGTGRAR 
Sbjct: 6   QVDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQ 65

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKEC 134
            S       GGG   GP P       PKK+ + ALR ALSD+  +  I V+ + +   + 
Sbjct: 66  GSIRAPHMTGGGIVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVAELVEGSKP 125

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
            +K  +   R +     L++   + +    L+ RN+  +++L    +N YD+L    +V 
Sbjct: 126 SSKAALATLRGVSERKNLLVVIERANDVAALSVRNLDGVHVLYADQLNTYDVLVSDDVVF 185

Query: 195 SKSAIEAL 202
           +K+A +A 
Sbjct: 186 TKAAYDAF 193


>gi|328951235|ref|YP_004368570.1| ribosomal protein L4/L1e [Marinithermus hydrothermalis DSM 14884]
 gi|328451559|gb|AEB12460.1| ribosomal protein L4/L1e [Marinithermus hydrothermalis DSM 14884]
          Length = 207

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 5/205 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V +  G+ +  +++ E     +    +L  V+RWQ  ++R G + +K R EVAY+
Sbjct: 1   MYTLPVISKSGKKEVQVNLPE-----EINPHVLYEVVRWQLAKRRRGTASTKTRGEVAYS 55

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QK TGRARH  +    F GGG  FGP P    + LPKKVR L L  A++D+   
Sbjct: 56  SRKLYPQKHTGRARHGDRGAPIFVGGGTVFGPKPRDYSYTLPKKVRKLGLAMAIADRAKE 115

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++       KTK  +   +A  L  +  +     +   + AARN+P  ++L  +G
Sbjct: 116 EKLLVVEAFEGVNGKTKEFLAWAKANGLDGSETVLVVTENELVRRAARNLPWASVLEPEG 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +NVYDILR  +L+L ++A++   +R
Sbjct: 176 LNVYDILRHERLLLDEAALKLALER 200


>gi|319952195|ref|YP_004163462.1| lsu ribosomal protein l4p [Cellulophaga algicola DSM 14237]
 gi|319420855|gb|ADV47964.1| LSU ribosomal protein L4P [Cellulophaga algicola DSM 14237]
          Length = 210

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  I +S+ ++ ++P +  +   ++     +R G  KSK R+E+A +
Sbjct: 1   MKVAVLDIKGKETGRSIELSDAVYGIEPNKHAVYLDVKQYLAHQRQGTHKSKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K ++ LA + ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYKQKLNKNLKRLARKSALSIKTNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++      KTK      ++L   +   +      + N  L++RN+    ++   
Sbjct: 121 KAILVVEDFNFDAPKTKDFKNVLKSLGLENKKSLFVLGDSNNNVYLSSRNLKGSEVITNS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y IL  + +VL + ++E +E   
Sbjct: 181 DLSTYKILNANNIVLLEGSLEGIESNL 207


>gi|160895841|ref|YP_001561423.1| 50S ribosomal protein L4 [Delftia acidovorans SPH-1]
 gi|226730650|sp|A9BPR9|RL4_DELAS RecName: Full=50S ribosomal protein L4
 gi|160361425|gb|ABX33038.1| ribosomal protein L4/L1e [Delftia acidovorans SPH-1]
          Length = 206

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+        E +F  +  + ++ +++       R G    K R +V +T 
Sbjct: 1   MQLELLNEQGQAASKFDAPETVFGREFNEDLVHQIVIAYRANARQGTRAQKDREQVRHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
           +K + QKGTGRAR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  AKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMVAILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L  +  KTK L  +F+A++L + ++I   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLESVMVI-AEEVDENLYLASRNLKNVFVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI+ L++ F
Sbjct: 180 ADPVSLVHYKKVLVTKGAIDKLKEMF 205


>gi|256830537|ref|YP_003159265.1| ribosomal protein L4/L1e [Desulfomicrobium baculatum DSM 4028]
 gi|256579713|gb|ACU90849.1| ribosomal protein L4/L1e [Desulfomicrobium baculatum DSM 4028]
          Length = 206

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 110/207 (53%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V + + ++ G IS+++DIF ++ +  +L   ++    + R G    K R  V   
Sbjct: 1   MANAKVYDQNRKEVGEISLADDIFQVEVRPEVLHLAVKSHLAKLRSGTVGVKTRGLVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R G    GP        + K++R LAL+ A+S +F S
Sbjct: 61  GKKPWRQKGTGRARAGSSRSPLWRSGAVIHGPQARDYSFKINKQIRKLALKMAISSRFTS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V++ L   E KTK  V   +        +I   + D N  L+ARN+P I +L  Q 
Sbjct: 121 ENMLVVNKLQFDEIKTKNFVA-CKDTLGLKKALIVVAEKDTNLALSARNVPGILVLDPQS 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           INVY+IL+  ++VL + A+ AL++R K
Sbjct: 180 INVYEILKYPQMVLDQGAVLALQERLK 206


>gi|298253072|ref|ZP_06976864.1| ribosomal protein L4 [Gardnerella vaginalis 5-1]
 gi|297532467|gb|EFH71353.1| ribosomal protein L4 [Gardnerella vaginalis 5-1]
          Length = 221

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 7/207 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQG------ILARVLRWQSWRKRIGCSKSKGRS 55
           + L+V +  G   G +    +IF +   +       ++ +V+  Q    R G    K R+
Sbjct: 4   VTLNVTDTKGNANGTVEAPAEIFGIS-NEDVLAHGPLVHQVVIAQLAAARQGTHAVKNRA 62

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115
            V+  G K + QKGTGRAR  S    Q+  GG   GPVP       PKK+++ AL + LS
Sbjct: 63  NVSGGGKKPWKQKGTGRARQGSIRAPQWVHGGVVHGPVPRKYDQRTPKKMKAAALCYVLS 122

Query: 116 DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175
           D+  +  I V+D  +     TK  V     +  +    +   + + N  ++ RNIP +++
Sbjct: 123 DRANAGRIAVVDFGIKDVPSTKTAVAALTPVTNNQFTTVVLSRENINEWMSVRNIPTVHV 182

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202
           +    +N YD++    +V SK   EA 
Sbjct: 183 IFADQLNTYDVVTAQYVVFSKEGFEAF 209


>gi|330432123|gb|AEC17182.1| 50S ribosomal protein L4 [Gallibacterium anatis UMN179]
          Length = 201

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL  ++        ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVTKDAQ----SALTVSETTFGREFNEALVHQVVVAYAAGARQGSRAQKSRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R GG  F   P      + KK+   A++  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGDIKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L +A +I    +D N  LAARN+  +++  VQGI
Sbjct: 117 RLVVVEKFEVEAPKTKVLVQKLKQMALDDA-LIITANVDENLYLAARNLYKVDVRDVQGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFEKVVMTVDAVKQIEEML 200


>gi|269104013|ref|ZP_06156710.1| LSU ribosomal protein L4p (L1e) [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163911|gb|EEZ42407.1| LSU ribosomal protein L4p (L1e) [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 200

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 109/205 (53%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V     +    ++VSE  F     + ++ +V+   +   R G    K RS+V+  G
Sbjct: 1   MELVV-----KGANALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG +F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARSGTMRSPIWRKGGVSFAARPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++N   +  KTK LV +   L+L++ALI+ G +LD N  LAARN+  +++   + I
Sbjct: 116 RLIVVENFSVEAPKTKALVAKLNELELTDALIVTG-ELDENLFLAARNLYKVDVRDAKAI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++A+E+  
Sbjct: 175 DPVSLIAFEKVVMTADAVKAVEEML 199


>gi|33594752|ref|NP_882395.1| 50S ribosomal protein L4 [Bordetella parapertussis 12822]
 gi|33599023|ref|NP_886583.1| 50S ribosomal protein L4 [Bordetella bronchiseptica RB50]
 gi|46576756|sp|Q7W2F5|RL4_BORPA RecName: Full=50S ribosomal protein L4
 gi|46576763|sp|Q7WRC4|RL4_BORBR RecName: Full=50S ribosomal protein L4
 gi|33564828|emb|CAE39771.1| 50S ribosomal protein L4 [Bordetella parapertussis]
 gi|33575069|emb|CAE30532.1| 50S ribosomal protein L4 [Bordetella bronchiseptica RB50]
          Length = 205

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 3/206 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+     S  + IF     + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAEVKHST 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+AF   P       + KK+    +R  LS     
Sbjct: 60  KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V+D    +  KTK    + ++L   ++++I    +D N  LA RN+P++ ++  + 
Sbjct: 120 DRVAVVDTFTLESPKTKLAAAKLKSLG-LDSVLIITDNVDENVYLATRNLPHVAVVEPRY 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI  LE+  
Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEEML 204


>gi|126662263|ref|ZP_01733262.1| 50S ribosomal protein L4 [Flavobacteria bacterium BAL38]
 gi|126625642|gb|EAZ96331.1| 50S ribosomal protein L4 [Flavobacteria bacterium BAL38]
          Length = 209

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V +++G++ G  + +S+ +FA++P +  +   ++     +R G  K+K R+EVA +
Sbjct: 1   MEVKVLDINGKETGRKVQLSDSVFAIEPNKHAVYLDVKQYLANQRQGNHKAKERAEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG  FGP P      L K ++ LA + ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSAKNPLFKGGGTVFGPRPRSYSFKLNKNLKRLARKSALSLKVNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++++V+++       TK  +   ++L   +   +      ++N  L++RN+   +++   
Sbjct: 121 SNLVVVEDFTFDTPSTKNFINVLKSLGLDNKKSLFVLGDSNKNVYLSSRNLKASSVVTTS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y IL    LVL + A++ +E   
Sbjct: 181 ELSTYAILNAKSLVLLEGAVDGIEANL 207


>gi|302036666|ref|YP_003796988.1| 50S ribosomal protein L4 [Candidatus Nitrospira defluvii]
 gi|300604730|emb|CBK41062.1| 50S ribosomal protein L4 [Candidatus Nitrospira defluvii]
          Length = 207

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 102/206 (49%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V +   +  G + +  ++F  KP   ++   +  Q    R G + +  R EV+ +
Sbjct: 1   MPIVDVVDSKKKKVGTVDLPSEVFGCKPHVPLVHEAVVMQRACDRQGTASTLRRGEVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S     +R GG  FGP P      +P+K    AL+ ALS K   
Sbjct: 61  GKKPWKQKHTGRARAGSLRSPVWRHGGTVFGPKPRSYAFGMPRKKYRAALQSALSAKALE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+ +L   + KTK L      L +S   ++     + +   A RN+  I +L  + 
Sbjct: 121 GNVVVVSDLTINQAKTKLLANALTQLGISGTALLVVGDANSHLVQAGRNLSGITILRPEE 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+LRC  L++ +S +  +++ +
Sbjct: 181 LNVYDVLRCHSLIIPQSELNRVKEVW 206


>gi|15644247|ref|NP_229299.1| 50S ribosomal protein L4 [Thermotoga maritima MSB8]
 gi|6226692|sp|P38516|RL4_THEMA RecName: Full=50S ribosomal protein L4; AltName: Full=TmaL4
 gi|4982063|gb|AAD36565.1|AE001798_30 ribosomal protein L4 [Thermotoga maritima MSB8]
          Length = 235

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 19/225 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N+ GE  G + +S+ +F + P   ++ R +  Q   +R G + +K R EV+  
Sbjct: 1   MAQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRARH S     +R GG   GP P      L KK++ LALR ALS K+  
Sbjct: 61  GRKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR----NFQLAARNIPNINLL 176
           N ++V+D+L  +  KTK L    + L LS+   +           N +L+ RN+P++ ++
Sbjct: 121 NKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVI 180

Query: 177 PV---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206
                             G+NV+D+L+   LVL++  +  +E+  
Sbjct: 181 IADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 225


>gi|254362073|ref|ZP_04978198.1| ribosomal protein L4 [Mannheimia haemolytica PHL213]
 gi|153093629|gb|EDN74594.1| ribosomal protein L4 [Mannheimia haemolytica PHL213]
          Length = 200

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR        +R G   F   P      + K++   A++  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRGAIKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++       KTK L  + + + L++A +I    +D N  LAARN+  +++  VQGI
Sbjct: 116 RLVVVEKFEIDAPKTKVLAQKLKDMALNDA-LIITANVDENLFLAARNLYKVDVRDVQGI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFDKVVVTVDAVKQIEEML 199


>gi|153004774|ref|YP_001379099.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. Fw109-5]
 gi|166234631|sp|A7HBL9|RL4_ANADF RecName: Full=50S ribosomal protein L4
 gi|152028347|gb|ABS26115.1| ribosomal protein L4/L1e [Anaeromyxobacter sp. Fw109-5]
          Length = 206

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +LD +  G I +++ +FA +  + +   V++ +    R G    K RS V+  
Sbjct: 1   MAKFDVYDLDKKKVGEIELADAVFAGEVNEHLFYEVVKAKLASDRSGTHAVKNRSLVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QK TGRAR  S   SQ+ GGGKA GP P    + +PKKVR  ALR AL+ +   
Sbjct: 61  GKKPWKQKHTGRARQGSTRASQWVGGGKAMGPKPRDYSYDVPKKVRKAALRSALALRSQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++      E KT         L  +   ++     +     + RN+   + L  +G
Sbjct: 121 QKLVIVQEWKPAEPKTSAAAKVLAKLG-ARKALVVDAAANAALARSVRNLDGSDFLAAEG 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDIL+   LVL+    + LE   
Sbjct: 180 LNVYDILKHDALVLTAETAKMLEASL 205


>gi|218186871|gb|EEC69298.1| hypothetical protein OsI_38360 [Oryza sativa Indica Group]
          Length = 197

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/188 (36%), Positives = 111/188 (59%), Gaps = 1/188 (0%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +  D+F +  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K Y QKGTGRARH + 
Sbjct: 3   LDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKIISEVSGTGRKPYKQKGTGRARHGTL 62

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138
              QFRGG    GP P      L KKVR L L+ ALS +     ++V ++L     KTK 
Sbjct: 63  RGPQFRGGATMHGPKPRSHTIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKN 122

Query: 139 LVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197
           +V+    ++ +  + ++DG  +D+  +LA +N+  +N+LP  G+NVY IL+   LV+++ 
Sbjct: 123 VVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVYSILQHDTLVMTRD 182

Query: 198 AIEALEDR 205
           A+  + +R
Sbjct: 183 AVNRIVER 190


>gi|116671520|ref|YP_832453.1| 50S ribosomal protein L4P [Arthrobacter sp. FB24]
 gi|116611629|gb|ABK04353.1| LSU ribosomal protein L4P [Arthrobacter sp. FB24]
          Length = 205

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 1/188 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  +IF ++    +L +V+  Q    R G  K+K R+EV+  G K + QKGTGRAR 
Sbjct: 6   KVDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQ 65

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKEC 134
            S       GGG   GP P       PKK+ + ALR ALSD+  +  I V+ + +   + 
Sbjct: 66  GSIRAPHMTGGGVVHGPTPRDYSQRTPKKMIAAALRGALSDRARNGRIHVVAELVAGTKP 125

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
             K  +   R +     L++   + +    L+ RN+ ++++L    +N YD+L    +V 
Sbjct: 126 SAKEALATLRGVSERKNLLVVIERANDVAALSVRNLADVHVLYADQLNTYDVLVSDDVVF 185

Query: 195 SKSAIEAL 202
           +K+A EA 
Sbjct: 186 TKAAYEAF 193


>gi|241765218|ref|ZP_04763201.1| ribosomal protein L4/L1e [Acidovorax delafieldii 2AN]
 gi|241365098|gb|EER59977.1| ribosomal protein L4/L1e [Acidovorax delafieldii 2AN]
          Length = 206

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+        E +F  +  + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNDQGQAASKFEAPETVFGREYNEDLVHQIVVAYQANARQGTRAQKDREQVRHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMSAILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L  +  KTK L  +F+A++L + ++I   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSLKLESPKTKVLADKFKAMNLQSVMVI-ADEVDENLYLASRNLVNVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++R  K++++K AI+ L++ F
Sbjct: 180 ADPVSLVRFKKVLVTKGAIDKLKEMF 205


>gi|212550450|ref|YP_002308767.1| 50S ribosomal protein L4 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226730614|sp|B6YQ84|RL4_AZOPC RecName: Full=50S ribosomal protein L4
 gi|212548688|dbj|BAG83356.1| 50S ribosomal protein L4 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 208

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 108/205 (52%), Gaps = 4/205 (1%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+++ N+ GE+ G  + + + +F ++P   I+   +R     KR G +KSK RSE++ +
Sbjct: 1   MEVNIFNIKGEETGRKVILEDSVFRVEPNDYIVYLDVRRYLANKRQGTAKSKERSEMSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G AR    +     GG + FGP P      L KK + +A R  LS +   
Sbjct: 61  TRKLGRQKGSGGARRGDINSPVLVGGARVFGPKPRDYSFKLNKKEKKMARRSVLSCRMRE 120

Query: 121 NDIMVIDNLVSKECKTKYL---VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             ++V+++   +  KTK         +    ++ L++   + D N  L+ARNI  + +  
Sbjct: 121 GGVIVVEDFSFETPKTKEFLDLAKNLKIQIANSKLLVILPEKDDNIFLSARNISKVKVTT 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEAL 202
           V  +N Y+IL  ++LV+ +S++ A+
Sbjct: 181 VSNLNTYEILDVNRLVILESSVVAI 205


>gi|288803934|ref|ZP_06409357.1| ribosomal protein L4/L1 family protein [Prevotella melaninogenica
           D18]
 gi|288333567|gb|EFC72019.1| ribosomal protein L4/L1 family protein [Prevotella melaninogenica
           D18]
          Length = 209

 Score =  172 bits (435), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 112/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  ++++E+IF ++P   +L   ++     +R G +KSK RSE A +
Sbjct: 1   MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG   AR    +     GGG+ FGP P      L KKV+ LA + AL+ K   
Sbjct: 61  TRKLGRQKGGSGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  V   +     S  +++   ++++N  L+ARN+    ++   
Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDSKKVLLVLPEVEKNVYLSARNLQKAEVMTAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    +V+++++++ +++  
Sbjct: 181 QVNSYKVLNADVVVITENSLKVIDEIL 207


>gi|332041524|gb|EGI77884.1| 50S ribosomal protein L4 [Hylemonella gracilis ATCC 19624]
          Length = 206

 Score =  172 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 102/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    +   + +F  +  + ++ +++       R G    K R+ V ++ 
Sbjct: 1   MQLELLNEQGQASSKLEAPDTVFGREYNEALVHQIVVAFQANARQGTRAQKDRATVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGG+ F   P       + KK+    +    S     
Sbjct: 61  KKPFKQKGTGNARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMASIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++L     KTK L  +F+A+   +++++   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVESLKVDSPKTKALAAKFKAMK-LDSVLVIADEVDENLYLASRNLANVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A++ L++ +
Sbjct: 180 ADPLSLVHYRKVLVTKAAVDQLKEMY 205


>gi|119961638|ref|YP_948656.1| ribosomal protein L4 [Arthrobacter aurescens TC1]
 gi|119948497|gb|ABM07408.1| ribosomal protein L4 [Arthrobacter aurescens TC1]
          Length = 205

 Score =  172 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 1/188 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  +IF ++    +L +V+  Q    R G  K+K R+EV+  G K + QKGTGRAR 
Sbjct: 6   KVDLPAEIFDVQTNVPLLHQVVVAQLAAARQGTHKTKTRAEVSGAGRKPFKQKGTGRARQ 65

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKEC 134
            S       GGG   GP P       PKK+++ ALR ALSD+  +  I VI + +   + 
Sbjct: 66  GSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNGRIHVIAELVAGTKP 125

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
             K  +   RA+     L++   + +    L+ RN+  I++L    +N YD+L    +V 
Sbjct: 126 SAKEALASLRAVSERKNLLVVIERANDVAALSVRNLAGIHVLYADQLNTYDVLISDDVVF 185

Query: 195 SKSAIEAL 202
           +K+A EA 
Sbjct: 186 TKAAFEAF 193


>gi|94312247|ref|YP_585457.1| 50S ribosomal protein L4 [Cupriavidus metallidurans CH34]
 gi|166199851|sp|Q1LI38|RL4_RALME RecName: Full=50S ribosomal protein L4
 gi|93356099|gb|ABF10188.1| 50S ribosomal subunit protein L4 [Cupriavidus metallidurans CH34]
          Length = 206

 Score =  172 bits (435), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   +G+    ++ S ++F     + ++ +++       R G  K K R EV +T 
Sbjct: 1   MELKLLQDNGQIGAGVAASAEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R   S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMFRAGMRSIYSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D       KTK L  +F+A+   ++++I    LD N  LA+RN+PN+ ++  + 
Sbjct: 121 GRINVVDGFAVDAPKTKLLADKFKAMG-LDSVLIITDNLDENLYLASRNLPNVAVVEPRH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++   K++++K+A+  +E+  K
Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206


>gi|294341609|emb|CAZ90026.1| 50S ribosomal protein L4 [Thiomonas sp. 3As]
          Length = 206

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L   N  G+      VS ++F     + ++ +++       R+G    K R+ V ++ 
Sbjct: 1   MQLDFINAQGQPAEKFEVSPEVFGRDFNEDLVHQIVIAYQANARLGNRAQKDRAVVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGGK F   P     H + KK     +R   S     
Sbjct: 61  RKPWKQKGTGRARAGMTSSPLWRGGGKIFPNSPDENFTHKVNKKAYRAGMRSLFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V+D    +  KTK +  + +A+   + +II     D N  LAARN+PN+ ++  + 
Sbjct: 121 GRLVVVDTFTVEAPKTKLVAEKCKAMGFDSVMIIADG-ADENLFLAARNLPNVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   +L   K++++K A+  L++  
Sbjct: 180 ADPLSLLFYKKVMMTKGAVSQLQEML 205


>gi|256380597|ref|YP_003104257.1| ribosomal protein L4/L1e [Actinosynnema mirum DSM 43827]
 gi|255924900|gb|ACU40411.1| ribosomal protein L4/L1e [Actinosynnema mirum DSM 43827]
          Length = 231

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 1/200 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + VR  DG+  G + +   +F  +    +L +V+  Q    R G  K K R+EV+  G K
Sbjct: 5   VEVRTPDGKTDGSVELPGAVFDAQANISLLHQVVVAQQAAARQGTHKVKTRAEVSGGGKK 64

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QKGTGRAR  S    QF GGG   GPVP       PKK+++ ALR ALSD+  +N +
Sbjct: 65  PYRQKGTGRARQGSTRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARANQV 124

Query: 124 MVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
            V+   V   +  TK       ++  +  +++   + +    ++ RN+ +++++    +N
Sbjct: 125 HVVTGFVEGDKPSTKTARKVLESVSTARRILVVLLRDEDVSWVSLRNLTHVHVIAPDQLN 184

Query: 183 VYDILRCSKLVLSKSAIEAL 202
            YD+L    +V SKSA++  
Sbjct: 185 TYDVLVNDDVVFSKSALDVF 204


>gi|304310017|ref|YP_003809615.1| 50S ribosomal protein L4 [gamma proteobacterium HdN1]
 gi|301795750|emb|CBL43949.1| 50S ribosomal protein L4 [gamma proteobacterium HdN1]
          Length = 200

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 1/199 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL+    G +SVSE  F     + ++ +V+       R G    K RSEV+  G K + Q
Sbjct: 2   NLNIASGGSVSVSEVAFGRDFNEALVHQVVTAFMAGSRQGTKGQKTRSEVSGGGKKPWKQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KG+GRAR  +     +RGGGK F          + KK+   A++  LS+    + ++V+D
Sbjct: 62  KGSGRARAGTIRSPIWRGGGKVFAASTRDHSQKVNKKMYRGAMQCILSELIRQDRVVVVD 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
               +  KTK L+ + + L   ++ +I    +D N  L+ARN+ N+ +  V+ I+   ++
Sbjct: 122 QFAMENPKTKELIQKLKGLG-LDSALIVSDFVDENLFLSARNVVNVGVCDVEAIDPVSLI 180

Query: 188 RCSKLVLSKSAIEALEDRF 206
              K+V++  A+   E+  
Sbjct: 181 AFDKVVVTVGALRKFEEML 199


>gi|254412295|ref|ZP_05026070.1| ribosomal protein L4/L1 family [Microcoleus chthonoplastes PCC
           7420]
 gi|196181261|gb|EDX76250.1| ribosomal protein L4/L1 family [Microcoleus chthonoplastes PCC
           7420]
          Length = 205

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 2/201 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           N  GE+ G  ++   +        I+ R L  Q    R G + +K R+EV   G K + Q
Sbjct: 3   NWQGEEVGQATLELKVAKEDSASHIVHRALVRQMTNARQGTASTKTRAEVRGGGRKPWRQ 62

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S     +RGGG  FGP P      + +K R LALR AL  +     ++   
Sbjct: 63  KGTGRARAGSNRSPLWRGGGIIFGPKPRDYNLKMNRKERRLALRTALQGRAEDMIVVEEF 122

Query: 128 NLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                  KTK L+       +     +     Q  +   L+ARN+P+I L+    +NVYD
Sbjct: 123 ADQLPRPKTKDLMDAIARWGIDPKQKVLLILPQPAQQVYLSARNVPSIKLIYADSLNVYD 182

Query: 186 ILRCSKLVLSKSAIEALEDRF 206
           +L   K+V + +A+  +++ +
Sbjct: 183 VLNADKIVTTNTALAKIQEVY 203


>gi|146329829|ref|YP_001210150.1| 50S ribosomal protein L4 [Dichelobacter nodosus VCS1703A]
 gi|166234663|sp|A5EX81|RL4_DICNV RecName: Full=50S ribosomal protein L4
 gi|146233299|gb|ABQ14277.1| 50S ribosomal protein L4 [Dichelobacter nodosus VCS1703A]
          Length = 202

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 4/205 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+   N        ISV++ +F+    + ++ +V+       R G    K ++EV+  G
Sbjct: 1   MEIQFTN----TADRISVADSVFSAAYNEPLIHQVVVAYLAGARQGTKAQKTKAEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GGK F   P   V  + +K+   AL    S+     
Sbjct: 57  VKPWKQKGTGRARAGSIRSPLWRTGGKIFAAKPRSYVQKVNRKMYRSALCSIFSELNRIG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
             + ++ L   E KTK  +   +     + L++     + N  LA+RN+PN+ ++ VQ I
Sbjct: 117 RFIAVNALELTEPKTKSFLKLMQDHAFGDDLLLITESENINIFLASRNLPNVTVIDVQEI 176

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N   +L+  K+++ K+A+E + +  
Sbjct: 177 NPALLLKHEKVIVDKAALEKINEWL 201


>gi|186477587|ref|YP_001859057.1| 50S ribosomal protein L4 [Burkholderia phymatum STM815]
 gi|226730631|sp|B2JIG5|RL4_BURP8 RecName: Full=50S ribosomal protein L4
 gi|184194046|gb|ACC72011.1| ribosomal protein L4/L1e [Burkholderia phymatum STM815]
          Length = 206

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 105/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N +G++   ++ S+ +F     + ++ +++       R G    K R +V +T 
Sbjct: 1   MELKLLNANGQEGAAVNASDVVFGRDYNEALIHQIVVAYQANARSGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    L    S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSHKVNKKMHRAGLCSIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D L  +  KTK L  +F+A+ L +++++    +D N  LA+RN+ ++ ++  + 
Sbjct: 121 GRIAVVDELTLEAPKTKLLAEKFKAMGL-DSVLVITDTVDENLYLASRNLAHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 180 ADPLSLIYFKKVLITKAAVAQIEELL 205


>gi|220903935|ref|YP_002479247.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254803730|sp|B8IYH3|RL4_DESDA RecName: Full=50S ribosomal protein L4
 gi|219868234|gb|ACL48569.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 210

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 112/206 (54%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V + + ++ G ++++ D+F ++ +  IL  V R Q   KR G    K R+ V+  
Sbjct: 1   MATVKVYDQNKQESGEVTLASDVFEIEVRPEILNLVARAQMAAKRAGTHNVKTRAFVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S     +RGG   FGP P      +  KVRSLAL+ ALS +  +
Sbjct: 61  GAKPWKQKGTGRARAGSNRSPIWRGGAITFGPSPRDYTFKVNSKVRSLALKMALSSRLAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +MV+  +V  E KTK+   +          +I   + + +   +ARNIP + L  V  
Sbjct: 121 ESLMVVKGIVLPEAKTKHF-AKVADTLGLTKALIVAPEENADLTRSARNIPGLTLTTVDR 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V +IL+  +LVL + A+E+++ RF
Sbjct: 180 LSVLEILKHKQLVLLEGAVESVQARF 205


>gi|44210|emb|CAA29705.1| unnamed protein product [Mycoplasma capricolum subsp. capricolum
           ATCC 27343]
          Length = 208

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V +  G +   I++++ ++ ++P Q  +   +  Q    R G  K K R+EV+  G
Sbjct: 1   MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR  S    Q++GG   FGP P I     + KKVR+LA R  LS K   
Sbjct: 61  RKPWKQKGTGLARQGSIRAPQWKGGEVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++++D     +  TK +V   +         +I   + +     ++ NI  +  +   
Sbjct: 121 NNLVIVDKFDFAKPSTKEMVVVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+D+L  +KL++++ A  A+E+ +
Sbjct: 181 QLNVFDLLNATKLLITEEAAIAVEEVY 207


>gi|49089074|gb|AAT51638.1| PA4262 [synthetic construct]
          Length = 201

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 3/200 (1%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYV 66
            N++G     I VSE  F  +  + ++ + +       R G    K RSEV+  G K + 
Sbjct: 3   LNVNGAQA--IEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           QKGTGRAR  +     +RGGG  F   P      L KK+   ALR  L++    + ++V+
Sbjct: 61  QKGTGRARAGTIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVV 120

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
            +      KTK LV +   L L +  +I    +D N  LAARN+ ++++  VQG ++  +
Sbjct: 121 ADFAVDAPKTKGLVAKLDTLGLKDV-LIVTDGVDENLYLAARNLAHVDVRDVQGSDLVSL 179

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           +   K++++ SA++  E+  
Sbjct: 180 IAYDKVLVTVSAVKKFEELL 199


>gi|157363443|ref|YP_001470210.1| 50S ribosomal protein L4 [Thermotoga lettingae TMO]
 gi|166990954|sp|A8F4R2|RL4_THELT RecName: Full=50S ribosomal protein L4
 gi|157314047|gb|ABV33146.1| ribosomal protein L4/L1e [Thermotoga lettingae TMO]
          Length = 226

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 19/225 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + N+ GE  G   + +DIF ++P   ++ R + +Q   +R G   +K RSEV+  
Sbjct: 1   MAVVDLYNMKGEKVGTQELKDDIFNIEPNFDVMWRYVDYQLSLRRAGTVSTKTRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K ++QK TGRARH S     +R GG A GP P      LPKK++ LAL+ ALS +F  
Sbjct: 61  GRKPWIQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLPKKMKKLALKSALSQRFKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG----CQLDRNFQLAARNIPNIN-- 174
            +I+V+D++     KTK +    +A       I+           N +L+ +NIP +   
Sbjct: 121 GNIIVVDDIGFDSSKTKNMRQLIKAFGFEGKKILFVLPWKRSEYENVKLSCKNIPGLKAI 180

Query: 175 -------------LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
                        ++ + G+NV+DIL   KLVL++  +  +E+  
Sbjct: 181 IADNPGATRENESIMRIDGLNVFDILNHEKLVLTRDMVMKIEEVL 225


>gi|313677121|ref|YP_004055117.1| LSU ribosomal protein l4p [Marivirga tractuosa DSM 4126]
 gi|312943819|gb|ADR23009.1| LSU ribosomal protein L4P [Marivirga tractuosa DSM 4126]
          Length = 208

 Score =  171 bits (434), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELS+    GED G  +S+S+ IF ++P    +   ++ +    R G  KSK R+E++ +
Sbjct: 1   MELSILKHTGEDTGRKVSLSDAIFDIEPNDHAIYLDVKQKMANARQGTHKSKERAEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L KK++++A + AL+ K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPIFKGGGRVFGPRPKDYSFKLNKKLKAVARKSALTYKAKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I V++     E KTK       +    S   ++   ++D+N  L+ RNI N  +  V 
Sbjct: 121 QMISVLEGFTFNEVKTKNYTDMLNKLSLDSKKTLLVLPEVDKNIVLSGRNIKNTQVTTVD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            +N YD+L   +L+  + ++E +E+ FK
Sbjct: 181 SLNTYDVLHADQLLFVEGSLEKIENLFK 208


>gi|332107867|gb|EGJ09091.1| 50S ribosomal protein L4 [Rubrivivax benzoatilyticus JA2]
          Length = 206

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 102/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+    +   + +FA    + ++ +V+       R G      R EV ++ 
Sbjct: 1   MQLELLNEQGQATAKVDAPDTVFARDYNEALVHQVVVAYQANARQGTRAQLDRGEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P     H + KK+    +   LS     
Sbjct: 61  KKPFRQKGTGRARAGMTSSPLWRGGGRIFPNRPDENFSHKVNKKMYRAGMASILSQLARD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L     KTK L  + +A+ L + ++I   Q+D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSLTVDAPKTKLLAQKLKAMGLESVMVI-ADQIDDNLALASRNLANVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AIE L++ F
Sbjct: 180 ADPLSLVFYKKVLVTKGAIEQLKEMF 205


>gi|33594480|ref|NP_882124.1| 50S ribosomal protein L4 [Bordetella pertussis Tohama I]
 gi|46577211|sp|Q7VTD2|RL4_BORPE RecName: Full=50S ribosomal protein L4
 gi|33564556|emb|CAE43872.1| 50S ribosomal protein L4 [Bordetella pertussis Tohama I]
          Length = 205

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 99/206 (48%), Gaps = 3/206 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+     S  + IF     + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAEVKHST 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+AF   P       + KK+    +R  LS     
Sbjct: 60  KKPWRQKGTGRARAGMTSSPLWRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V+D    +  KTK    + ++L   ++++I    +D N  LA RN+P + ++  + 
Sbjct: 120 DRVAVVDTFTLESPKTKLAAAKLKSLG-LDSVLIITDNVDENVYLATRNLPYVAVVEPRY 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI  LE+  
Sbjct: 179 ADPLSLIHYKKVLITKPAIAQLEEML 204


>gi|139438581|ref|ZP_01772097.1| Hypothetical protein COLAER_01095 [Collinsella aerofaciens ATCC
           25986]
 gi|133776120|gb|EBA39940.1| Hypothetical protein COLAER_01095 [Collinsella aerofaciens ATCC
           25986]
          Length = 208

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V+N +G+      ++ +++ ++P   ++  +++ Q    R G   +KGRSEV+  
Sbjct: 1   MAKFEVKNSEGKKVAEAELAAEVYGIEPNIHVMHHIVKCQMASWRQGTQSAKGRSEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S   +Q+R GG  F P P      +  K   LA+R ALS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAAQWRHGGVVFAPKPRSYAKRMNNKEVKLAMRSALSAKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++++D+   ++  TK  V   +AL L    + I     D N  L+ RNIP   ++   
Sbjct: 121 GELVLVDDYGFEKPSTKAAVAMLKALGLEGKRLTIIVRDEDVNAYLSFRNIPKTFIITAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             N YD++  + +++         +  
Sbjct: 181 EANTYDLVNNNAVLMPADIAAHFGEVL 207


>gi|307565141|ref|ZP_07627649.1| 50S ribosomal protein L4 [Prevotella amnii CRIS 21A-A]
 gi|307346172|gb|EFN91501.1| 50S ribosomal protein L4 [Prevotella amnii CRIS 21A-A]
          Length = 209

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  ++++E+IF ++P   +L   ++     +R G +KSK RSE A +
Sbjct: 1   MDINVLDIKGQETGRKVTLNENIFGIEPNNHVLYLAVKQYLAAQRQGTAKSKERSEHAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALSYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++V+++      KTK  V   +        +++   + ++N  L+ARN+    ++   
Sbjct: 121 NAVVVVEDFKLDTPKTKDFVNITKNLKVDGKKVLLVLPEAEKNVYLSARNLKKSEVMIAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +L    LV+++++++ +
Sbjct: 181 QLNSYKVLNADVLVITENSLKVI 203


>gi|261880881|ref|ZP_06007308.1| 50S ribosomal protein L4 [Prevotella bergensis DSM 17361]
 gi|270332388|gb|EFA43174.1| 50S ribosomal protein L4 [Prevotella bergensis DSM 17361]
          Length = 209

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N++G++ G   ++++ IF ++P   ++   ++     +R G +K+K RSE A +
Sbjct: 1   MEVSVLNINGQETGRKATLNDAIFGIEPNDHVIYLDVKHYLAAQRQGTAKTKERSERAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G AR    +     GGG+ FGP P      L KKV++LA + ALS K   
Sbjct: 61  TRKLIRQKGSGGARRGDINSPVLVGGGRVFGPQPHDYSFKLNKKVKALARKSALSYKAKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I++++++  +  KTK  V   +         ++   ++++N  L+ARNI    ++   
Sbjct: 121 NAIIIVEDIDIEAPKTKDFVNITKNLKVDGKKTLVVLPEVNKNVYLSARNIQKAEVMTAN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN Y +L    LV+++ +++ ++D  
Sbjct: 181 AINTYKVLNADVLVITEGSLKTIDDIL 207


>gi|256831828|ref|YP_003160555.1| 50S ribosomal protein L4/L1e [Jonesia denitrificans DSM 20603]
 gi|256685359|gb|ACV08252.1| ribosomal protein L4/L1e [Jonesia denitrificans DSM 20603]
          Length = 228

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 11/213 (5%)

Query: 1   MIE---LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57
           M E   + + +  G   G   +  +IF +     ++ +V+  Q    R G   +K R++V
Sbjct: 1   MAENLTVDILDATGNKTGDAVLPAEIFDVALNVPLIHQVVVAQQAAARQGTHATKTRAQV 60

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117
           +  G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+
Sbjct: 61  SGGGRKPYKQKGTGRARQGSTRAPQFAGGGVVHGPQPRDYSQRTPKKMKAAALRSALSDR 120

Query: 118 FCSNDIMVIDNL-VSKECKTK-------YLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169
             +  I VID+  V++   TK        L            +++   + D     + RN
Sbjct: 121 ARAGRIHVIDSFGVTEAPSTKGALSALSSLKLSKENFGDVKHVLVVHERNDEITIKSLRN 180

Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
           I +++L+    +N YD+L    +V +K+A++  
Sbjct: 181 IESVHLITADQLNTYDVLLSDDVVFTKAALDGF 213


>gi|86132545|ref|ZP_01051138.1| 50S ribosomal protein L4 [Dokdonia donghaensis MED134]
 gi|85816787|gb|EAQ37972.1| 50S ribosomal protein L4 [Dokdonia donghaensis MED134]
          Length = 209

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G    +S+ +F ++P +  +   ++     +R G  K+K R+E+A +
Sbjct: 1   MKVAVVDIKGKETGRKADLSDAVFGIEPNKHAVYLDVKQFLANQRQGTHKAKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L K ++ LA R AL+ K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKGLKRLARRSALTMKAND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I VI++      KTK  V   +AL   +   +I   + + N  L++RN+    ++   
Sbjct: 121 NAITVIEDFNFDAPKTKDFVNVLKALGLENKKSLIVLGESNNNVYLSSRNLKASKVVKSS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y I+  + +V  + ++E +E   
Sbjct: 181 ELSTYGIMNANNVVFLEGSLEGVEANL 207


>gi|332182015|gb|AEE17703.1| ribosomal protein L4/L1e [Treponema brennaborense DSM 12168]
          Length = 210

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/201 (32%), Positives = 106/201 (52%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V ++DG++   I++ + +F L   + ++   +  +   KR+G + +K RSEV  + 
Sbjct: 1   MEKKVYSVDGKELRTITLDDKVFGLPVNEDVIYYAINNELANKRVGTACTKDRSEVHGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QKGTGRAR   K     RGGG  FGP P      LPKKV+ LA++  LS K   +
Sbjct: 61  AKPYKQKGTGRARRGDKKSPLCRGGGVIFGPKPRDFSFVLPKKVKRLAMKSILSLKAQGD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + VI++   +  KTK LV   +        +I     D N + A RNIP ++ L    +
Sbjct: 121 RLTVIEDFTVESGKTKDLVAILKNFPSDGRTVIVLKDDDANIKQAGRNIPAVSFLSYNRL 180

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
             +D+    K+++ +SA++ L
Sbjct: 181 RAHDLFYGRKVIMLESAVKNL 201


>gi|112791755|gb|ABI22153.1| ribosomal protein L4 [Flavobacterium hibernum]
          Length = 209

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 108/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V + +G+D G  + +S+ +FA++P    +   ++     +R G  K+K R+EV  +
Sbjct: 1   MEVKVLDFNGKDTGRKVQLSDSVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEVTGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG  FGP        L K ++ LA + A S K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKNPLFKGGGTIFGPRQRSYSFKLNKSLKRLARKSAFSIKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++I+V+++   +   TK  +   +AL   +   +    + ++N  L++RN+   N++   
Sbjct: 121 SNIIVLEDFNFEAPNTKNFINVLKALGLENKKSLFVLGESNKNVYLSSRNLKASNVVTSS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y IL  + LVL + ++E +E+  
Sbjct: 181 ELSTYAILNTNNLVLLEGSLELIEENL 207


>gi|332042719|gb|EGI78919.1| ribosomal protein L4/L1e [Lacinutrix algicola 5H-3-7-4]
          Length = 209

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 105/203 (51%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V +++G++ G    +S D+FA++P    +   ++     +R G  K+K R+E+  +
Sbjct: 1   MKVAVLDINGKETGRKADLSSDVFAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEITGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L K ++ LA + A S K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKNLKRLARKSAFSIKANE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++      KTK      +ALD  +   +      + N  L++RN+    ++   
Sbjct: 121 KAIVVLEDFNFDSPKTKNFTNILKALDLQNKKSLFVLGASNNNVYLSSRNLKGSEVVTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            ++ Y IL  +++VL + A+E +
Sbjct: 181 ELSTYKILNANQVVLLEGALEGI 203


>gi|50086214|ref|YP_047724.1| 50S ribosomal protein L4 [Acinetobacter sp. ADP1]
 gi|81613021|sp|Q6F7R3|RL4_ACIAD RecName: Full=50S ribosomal protein L4
 gi|49532190|emb|CAG69902.1| 50S ribosomal protein L4, regulates expression of S10 operon
           [Acinetobacter sp. ADP1]
          Length = 205

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 4/201 (1%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            ++++ + G     + +SE  F  +  + ++ +V+       R G    K R+EV+  G 
Sbjct: 5   NVNLKTVSGSA---VELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGK 61

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + 
Sbjct: 62  KPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDR 121

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +++++       KTK L+ +      +   +I    +D N  LAARN+P+++++    I+
Sbjct: 122 LVLVEEFAVAAPKTKELLAKLND-LNAARALIVTDAVDENLYLAARNLPHVDVVDATAID 180

Query: 183 VYDILRCSKLVLSKSAIEALE 203
              ++   K+V+S +A + +E
Sbjct: 181 PVSLIAFDKVVMSVAAAKKIE 201


>gi|300742056|ref|ZP_07072077.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa M567]
 gi|311111972|ref|YP_003983194.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa ATCC
           17931]
 gi|300381241|gb|EFJ77803.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa M567]
 gi|310943466|gb|ADP39760.1| ribosomal protein L4/L1 family protein [Rothia dentocariosa ATCC
           17931]
          Length = 205

 Score =  171 bits (433), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 1/188 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  +IF  +    +L +V+  Q    R G  K+K R EV+  G K + QKGTG AR 
Sbjct: 7   KVDLPAEIFDAQASVPLLHQVVVAQLAAARQGTHKTKNRGEVSGAGRKPFKQKGTGNARQ 66

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134
            S       GGG   GP P       PKK+ + ALR ALSD+   + I V++N +S +  
Sbjct: 67  GSIRAPHMTGGGVVHGPTPRNYAQRTPKKMIAAALRGALSDRARHDRIHVVENFISGETP 126

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
            TK     F  L     ++    + +    L+ARN+  +++L    +N YD+L    +V 
Sbjct: 127 STKAAKAAFAELTDRKNVLFVIDRAEDVLALSARNLQKVHVLYADQLNTYDVLVSDDVVF 186

Query: 195 SKSAIEAL 202
           +K+A +A 
Sbjct: 187 TKAAYDAF 194


>gi|330997364|ref|ZP_08321215.1| 50S ribosomal protein L4 [Paraprevotella xylaniphila YIT 11841]
 gi|329570738|gb|EGG52454.1| 50S ribosomal protein L4 [Paraprevotella xylaniphila YIT 11841]
          Length = 209

 Score =  171 bits (433), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV N+ GED G  + +++ IF ++P   ++   ++     +R G +KSK RSEV+ +
Sbjct: 1   MEVSVLNIKGEDTGRKVLLNDSIFNIEPNDHVIYLDVKQYLANQRQGTAKSKERSEVSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + ALS K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYGFKLNKKVKVLARKSALSYKAKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  +             +      ++N  L+ARNI  +N++   
Sbjct: 121 NAIVVVEDFTMEVPKTKQFIEIINNLKVGGKKALFVLPGANKNVYLSARNIERVNVMTAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    +V+++++++ +++  
Sbjct: 181 ALNTYKVLNADVMVVTENSLKVVDEIL 207


>gi|303256451|ref|ZP_07342465.1| ribosomal protein L4/L1 family protein [Burkholderiales bacterium
           1_1_47]
 gi|331000645|ref|ZP_08324298.1| 50S ribosomal protein L4 [Parasutterella excrementihominis YIT
           11859]
 gi|302859942|gb|EFL83019.1| ribosomal protein L4/L1 family protein [Burkholderiales bacterium
           1_1_47]
 gi|329570857|gb|EGG52568.1| 50S ribosomal protein L4 [Parasutterella excrementihominis YIT
           11859]
          Length = 206

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 103/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N  G+    ++ ++ +F  +  + ++ +++       R+G      R  V ++ 
Sbjct: 1   MELKVVNDQGQQTATLAAADTVFGREYNEALVHQIVVAYQANARLGTRAQLTREAVHHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+AF   P       + KK+   A+   LS     
Sbjct: 61  RKPWRQKGTGRARAGMSSSPVWRGGGRAFPNTPDENFTQKVNKKMMRGAMACILSKLAID 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++V++N+     KTK    + +A+ L N+ +I   ++  N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLVVVENIDVDTPKTKNFANKLKAMGL-NSALIITDEISENLDLASRNLKNVWVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++    +V++K+AI  LE+ +
Sbjct: 180 ADPVSLVHFDSVVVTKAAISKLEEMW 205


>gi|299470351|emb|CBN78400.1| 50S ribosomal protein L4P [Ectocarpus siliculosus]
          Length = 307

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 3   ELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           E+ V    DG     +S++  +F +  ++ ++  V+RWQ  R+R G  ++K   E++ +G
Sbjct: 99  EVEVVAWADGAPVATVSLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSG 158

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+  QKG G AR        +RGG KA GP        L KK   L LR ALS +    
Sbjct: 159 RKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREG 218

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + V+D+L S   KT  ++   +A  +      + G      F  +  NI    +LP +G
Sbjct: 219 QLKVVDDLKSDGFKTSAMIKTIKARGIDGPVTFVVGGDPQVEFMRSVSNIMGAKVLPARG 278

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            NV+DI++   LVL++ A+  LE+  +
Sbjct: 279 ANVHDIIKRPNLVLTQDAVTHLEEFLQ 305


>gi|17547737|ref|NP_521139.1| 50S ribosomal protein L4 [Ralstonia solanacearum GMI1000]
 gi|46577281|sp|Q8XV13|RL4_RALSO RecName: Full=50S ribosomal protein L4
 gi|17430042|emb|CAD16727.1| probable 50s ribosomal protein l4 [Ralstonia solanacearum GMI1000]
 gi|299065416|emb|CBJ36585.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Ralstonia solanacearum CMR15]
          Length = 206

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   DG+    +S S ++F     + ++ +++       R G  K K R EV +T 
Sbjct: 1   MELKLLQADGQLGTGVSASPEVFGRDYNEALVHQIVVAYQANARSGNRKQKDREEVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R   S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D+L     KTK L  +FRA+   +++++    LD N  LA+RN+ ++ ++  + 
Sbjct: 121 GRINVVDSLSVDAPKTKLLADKFRAMG-LDSVLVITDNLDENLFLASRNLAHVLVVEPRH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++   K++++K+A+  +E+  K
Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206


>gi|88657712|ref|YP_507228.1| 50S ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas]
 gi|109893594|sp|Q2GH55|RL4_EHRCR RecName: Full=50S ribosomal protein L4
 gi|88599169|gb|ABD44638.1| ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas]
          Length = 205

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 116/205 (56%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+++ N++ +  G I ++  IF++  +  IL  V+ WQ  ++R G  K+K   +++ T 
Sbjct: 1   MEVNIINVNSDRIGTIDLNPLIFSVNYRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QK TGRAR  S    QFRGG   FGPV     ++L KKVR+L L+ ALS K   N
Sbjct: 61  AKPHRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++D++     KT  ++   +  +   + +I     +++   + RN+ N+ LL   G 
Sbjct: 121 KLLILDSIDVNFVKTTQVLQFIKNFE-HKSFLIIDKDYNKSVVCSCRNLHNVTLLKQIGT 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV DILR   ++L+  A++ LE+R 
Sbjct: 180 NVLDILRHDCIILTVGAVKYLEERL 204


>gi|45644694|gb|AAS73082.1| predicted ribosomal protein L4 [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 204

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ + +        IS+S ++F+ +  + ++ + +       R G +K K RSEV   G
Sbjct: 1   MKIELLS--NSKNKDISISNEVFSKEFNESLVHQAVVSFMAAARQGSAKQKNRSEVRGGG 58

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  +     +RGGG  F   P      + KK+   A++   S+    N
Sbjct: 59  KKPYRQKGTGRARAGTIRSPLWRGGGVTFAARPRDFSKKINKKMYRAAIKSIFSELVRQN 118

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++ I+  V ++ KTK +    +     + ++I   +LD N  L+ARNIPN++++ V+ I
Sbjct: 119 RLVAIEKPVLEKPKTKEIANFLKEFS-LSKVLIIIDELDMNLYLSARNIPNVDVITVKEI 177

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           N  ++++  K+ ++  A++ +E+
Sbjct: 178 NPVNLIKSHKVAVTSEALKQIEE 200


>gi|303233121|ref|ZP_07319794.1| 50S ribosomal protein L4 [Atopobium vaginae PB189-T1-4]
 gi|302480706|gb|EFL43793.1| 50S ribosomal protein L4 [Atopobium vaginae PB189-T1-4]
          Length = 208

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N++G+    + +S ++F ++P   ++ +V+       R G   +K RS V+  
Sbjct: 1   MSKIDVLNVEGKKADAVELSSNVFGIEPNIAVVHQVVVAYEACLRQGTHSTKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+ GGG  FGP P        KK + LA+R  LS K   
Sbjct: 61  GVKPFRQKGTGRARQGTIRAPQWAGGGVVFGPTPHSHALRSNKKEKKLAMRSVLSGKVAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++++D L  +E   K      +AL L +  + +     D    L+ RN+P + +    
Sbjct: 121 GELVLLDKLAFEEPSCKQAAAIIKALGLQDKRVTLVVDDDDVVSYLSFRNLPKVIIYAAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N   ++  + LV++ +  + LE+  
Sbjct: 181 EVNTRILIDNAALVMTVAVAKQLEEAL 207


>gi|77165786|ref|YP_344311.1| ribosomal protein L4/L1e [Nitrosococcus oceani ATCC 19707]
 gi|109893612|sp|Q3J8R5|RL4_NITOC RecName: Full=50S ribosomal protein L4
 gi|76884100|gb|ABA58781.1| LSU ribosomal protein L4P [Nitrosococcus oceani ATCC 19707]
          Length = 206

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 108/206 (52%), Gaps = 2/206 (0%)

Query: 2   IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           + L+V++L +  + G+  +S+ +F     + ++ +V+     + R G    K RSE    
Sbjct: 1   MNLAVQSLAENSETGMTQLSDTVFTQHFNEPLIHQVVTAYLAKARAGTHAQKTRSEARGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  +     +RGGG+AF   P      + +K+   A+R  LS+    
Sbjct: 61  GAKPFRQKGTGRARAGTIRSPLWRGGGRAFAAKPGDYSQKVNRKMYRAAMRSILSELVRQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + +ID ++  + KT+ L    + +    +++I   + DRN +L+ARNIP + +  V  
Sbjct: 121 DRLRMIDKIMLSKPKTRDLAKLLKPIT-WRSVLIVVAEDDRNLELSARNIPTVAIRNVSR 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++  +++R   ++++  AI   E+  
Sbjct: 180 VSPVELIRFDGVLVTGDAIRCFEESL 205


>gi|163840905|ref|YP_001625310.1| LSU ribosomal protein L4/L1 family protein [Renibacterium
           salmoninarum ATCC 33209]
 gi|162954381|gb|ABY23896.1| LSU ribosomal protein L4/L1 family [Renibacterium salmoninarum ATCC
           33209]
          Length = 226

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 1/191 (0%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
               + +  +IF ++    +L +V+  Q    R G  K+K R+EV+  G K + QKGTGR
Sbjct: 4   KTVKVELPAEIFDVQTNVPLLHQVVVAQLAAARQGTQKTKTRAEVSGAGRKPFKQKGTGR 63

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVS 131
           AR  S       GGG   GP P       PKK+++ ALR ALSD+  +  I V+ + +  
Sbjct: 64  ARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARNERIHVVAELVAG 123

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
            +   K  +   R +     L++   + +    L+ RN+ +I++L V  +N YD+L    
Sbjct: 124 TKPSAKEALATLRGVSERKNLLVVIERANDVAALSVRNLADIHVLYVDQLNTYDVLISDD 183

Query: 192 LVLSKSAIEAL 202
           +V +K+A EA 
Sbjct: 184 VVFTKTAYEAF 194


>gi|256821663|ref|YP_003145626.1| 50S ribosomal protein L4/L1e [Kangiella koreensis DSM 16069]
 gi|256795202|gb|ACV25858.1| ribosomal protein L4/L1e [Kangiella koreensis DSM 16069]
          Length = 200

 Score =  171 bits (432), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +ELS+ +      G I VSE  F  +  + ++ +V+       R G    K RS V+  G
Sbjct: 1   MELSLTS-----GGAIKVSEVAFGREFNESLVHQVVVAYLAAARAGTRAQKNRSAVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + +K+   A++  LS+     
Sbjct: 56  KKPWRQKGTGRARAGTIRSPLWRKGGVTFAAQPQDYTQKVNRKMYRGAIQSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++      KTK L  + + LD+  A +I    +D N  LA+RN+  +++  V  +
Sbjct: 116 RLIVVEDFSVSAPKTKELAAKLKELDVKEA-LIVTDSVDENLFLASRNLYKVDVRDVNAL 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  AI+ +E+  
Sbjct: 175 DPVSLIGFDKVIMTVPAIKKVEEML 199


>gi|114330575|ref|YP_746797.1| 50S ribosomal protein L4 [Nitrosomonas eutropha C91]
 gi|122314431|sp|Q0AIJ4|RL4_NITEC RecName: Full=50S ribosomal protein L4
 gi|114307589|gb|ABI58832.1| LSU ribosomal protein L4P [Nitrosomonas eutropha C91]
          Length = 206

 Score =  170 bits (431), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 105/208 (50%), Gaps = 3/208 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+++  R+ +G+    I VS+ +F     + ++ +++       R G    KGRSEVA +
Sbjct: 1   MVKIPCRSENGQVV-NIEVSDSVFDRVYNEALVHQIVTSYLANARSGTRAQKGRSEVAGS 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
             K + QKGTGRAR  + S   +RGGGK F   P       + +K+    +    S    
Sbjct: 60  TRKQWRQKGTGRARVGAASNPLWRGGGKIFPNKPTENFTKKVNRKMYRAGMCTIFSQLLR 119

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++ ++ I     +  KTK+ + + +   L N +II   ++D N  LA+RN+PNI ++ + 
Sbjct: 120 NSKLVAISEFRVETTKTKFFLQKLKNYQLENVMII-TDEVDENLYLASRNVPNIKVVEID 178

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            I+   +L    +V+++ A+  +E   +
Sbjct: 179 LIDPVSLLSYDNVVITREAVNKIESVLQ 206


>gi|123969296|ref|YP_001010154.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. AS9601]
 gi|166199844|sp|A2BTD6|RL4_PROMS RecName: Full=50S ribosomal protein L4
 gi|123199406|gb|ABM71047.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. AS9601]
          Length = 210

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L     DG+  G +S+   +        ++ R +  Q   KR G + +  RSEV   
Sbjct: 1   MTTLETLKWDGKKSGKVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVSD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              +       K+ KT  ++       +  +  +++         + +  NI  + L+  
Sbjct: 121 MKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+DIL  +KLV+ +SAI+ +++ +
Sbjct: 181 DQLNVFDILNANKLVIGQSAIDKIQEVY 208


>gi|187930363|ref|YP_001900850.1| 50S ribosomal protein L4 [Ralstonia pickettii 12J]
 gi|241664531|ref|YP_002982891.1| 50S ribosomal protein L4 [Ralstonia pickettii 12D]
 gi|309782835|ref|ZP_07677555.1| ribosomal protein L4/L1 family protein [Ralstonia sp. 5_7_47FAA]
 gi|226730711|sp|B2UEL8|RL4_RALPJ RecName: Full=50S ribosomal protein L4
 gi|187727253|gb|ACD28418.1| ribosomal protein L4/L1e [Ralstonia pickettii 12J]
 gi|240866558|gb|ACS64219.1| ribosomal protein L4/L1e [Ralstonia pickettii 12D]
 gi|308918259|gb|EFP63936.1| ribosomal protein L4/L1 family protein [Ralstonia sp. 5_7_47FAA]
          Length = 206

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   +G+    ++ S ++F     + ++ +V+       R G  K K R EV +T 
Sbjct: 1   MELKLLQDNGQLGAGVAASPEVFGRDYNEALVHQVVVAYQANARSGNRKQKDREEVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R   S     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSIYSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+D+L     KTK L  +FRA+   +++++    LD N  LA+RN+ ++ ++  + 
Sbjct: 121 GRINVVDSLSVDAPKTKLLADKFRAMG-LDSVLVITDNLDENLFLASRNLAHVLVVEPRH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++   K++++K+A+  +E+  K
Sbjct: 180 ADPLSLVHYKKVLVTKAAVAQIEELLK 206


>gi|126697086|ref|YP_001091972.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9301]
 gi|166199841|sp|A3PF46|RL4_PROM0 RecName: Full=50S ribosomal protein L4
 gi|126544129|gb|ABO18371.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9301]
          Length = 210

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L     DG+  G +S+   +        ++ R +  Q   KR G + +  RSEV   
Sbjct: 1   MTTLETLKWDGKKSGKVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVSD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              +       K+ KT  ++       +  +  +++         + +  NI  + L+  
Sbjct: 121 IKAVEDFGSTLKQPKTSDIINGLARLGIQKTEKVLVILDSPSDIIKKSINNIEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+DIL  +KLV+ +SAI+ +++ +
Sbjct: 181 DQLNVFDILNANKLVIGQSAIDKIQEVY 208


>gi|325179760|emb|CCA14163.1| 50S ribosomal protein L4 putative [Albugo laibachii Nc14]
          Length = 279

 Score =  170 bits (431), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 75/197 (38%), Positives = 107/197 (54%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           D      +++   +F +  ++ IL RV+RWQ   +R G  K+K RSE   +  K+  QKG
Sbjct: 80  DESVVNTLALDPSVFNVPLRKDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKG 139

Query: 70  TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129
           +G+AR       Q+RGG    GPV     + L KKVR+  +R ALS K     + +++NL
Sbjct: 140 SGQARVGDVRAPQWRGGYCVHGPVVRDHSYTLQKKVRAFGIRVALSQKLREGKLAIVENL 199

Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                KTK L     A    NAL IDG ++  NF L++RNIP I+++P   INVY IL+ 
Sbjct: 200 DWDVVKTKELRDTLIARKWDNALFIDGEEVTTNFILSSRNIPCIDVIPQHKINVYSILKR 259

Query: 190 SKLVLSKSAIEALEDRF 206
             L+ +  AI   EDRF
Sbjct: 260 DLLITTVDAITYFEDRF 276


>gi|148238769|ref|YP_001224156.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7803]
 gi|166199919|sp|A5GIU4|RL4_SYNPW RecName: Full=50S ribosomal protein L4
 gi|147847308|emb|CAK22859.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7803]
          Length = 211

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  S+   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MANCVVRDWQGKETGKASLDLKVAKETTALDLMHRAVLRQQAHTRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRLALRTALMARIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KT+ +V       ++  + ++I         + + RN+  + L+  
Sbjct: 121 VTVVKDFGTSLEAPKTREIVDALGRLGIEADSKVLIVLGTPSEVLRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LVL + A+  +++ +
Sbjct: 181 NQLNVFDLLHANALVLGEEALATIQEVY 208


>gi|237653995|ref|YP_002890309.1| 50S ribosomal protein L4 [Thauera sp. MZ1T]
 gi|237625242|gb|ACR01932.1| ribosomal protein L4/L1e [Thauera sp. MZ1T]
          Length = 206

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+    +  S+ +F     + ++ +V+       R G  K KGRSE+A + 
Sbjct: 1   MELKLLNDQGQAASTLEASDVLFGRDYNEALVHQVVTAYLANARSGNRKQKGRSEIAKST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGGK F   P       + +K+    +   LS     
Sbjct: 61  RKPFRQKGTGNARAGMASSPLWRGGGKIFPSSPDENFSQKVNRKMYRAGVAAILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V++N   +  KT+ L  + + +   +++++   ++D N  L++RN+  + +L V  
Sbjct: 121 DRLAVVENFSVEAPKTRLLSQKLKGMG-LDSVLVITDEIDENLFLSSRNLHQVLVLEVSE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++R  K++++K A+  +E+ ++
Sbjct: 180 ADPVSLVRFPKVLVTKGALAKMEEAWQ 206


>gi|254483427|ref|ZP_05096656.1| ribosomal protein, L4/L1 family [marine gamma proteobacterium
           HTCC2148]
 gi|214036301|gb|EEB76979.1| ribosomal protein, L4/L1 family [marine gamma proteobacterium
           HTCC2148]
          Length = 205

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V      D G +SVS+  FA +  + ++ +V+       R G    K R+ V+  G
Sbjct: 1   MELNVVKAGNADAGKVSVSDVAFAKEYNEDLVHQVVTAYMAGSRQGTRAQKNRAAVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + +K+   ALR  +S+     
Sbjct: 61  KKPWRQKGTGRARAGTIRSPIWRSGGVTFAAQPQDHSQKVNRKMYRAALRTIMSELARQE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++L  ++ KTK L+ +     + NA +I   +++ N  LA+RN+  +++  V G+
Sbjct: 121 RLVVVESLDLEQPKTKLLLEQLGGYGVDNA-LIVSAEVNENLYLASRNLHKVDVRDVDGV 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ LE+  
Sbjct: 180 DPVSLIAHDKVIVTVDAVKKLEEML 204


>gi|50364939|ref|YP_053364.1| 50S ribosomal protein L4 [Mesoplasma florum L1]
 gi|81612930|sp|Q6F1Z3|RL4_MESFL RecName: Full=50S ribosomal protein L4
 gi|50363495|gb|AAT75480.1| 50S ribosomal protein L4 [Mesoplasma florum L1]
          Length = 208

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N+ G++   IS+++ ++ + P +  +   +  Q    R G  K+K R+EV   G
Sbjct: 1   MELKVLNVQGQEVKTISLNDSVWNVAPHKQAIYDTVISQQAALRQGTKKTKTRAEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  S     +RGGG  FGP P I     + KKVR+LA + ALS K   
Sbjct: 61  KKPWRQKGTGRARQGSIRAPHWRGGGVTFGPTPDINYKKSVNKKVRALAFKSALSIKASE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++++D     +  TK +++  +         +I   + +     ++ NI  +  LP  
Sbjct: 121 QNLVIVDKFDFAKPSTKEMISVMKNLQIDDQKTLIITKENEELVIKSSSNIKGVKTLPSI 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NV+DIL  +KLV+++ A  A+E  +
Sbjct: 181 KLNVFDILNATKLVMTEEAAMAVEGVY 207


>gi|1350752|sp|P49226|RL4_MORMO RecName: Full=50S ribosomal protein L4
 gi|1037107|gb|AAB41513.1| L4 [Morganella morganii]
          Length = 200

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 104/205 (50%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVMKDAQ-----SLTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 56  KKPWRQKGTGRARSGSIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++    +  KTK LV + + + L + +I+   ++D N  LAARN+  +++  V  I
Sbjct: 116 RLIIVEKFAVEAPKTKLLVQKLKDMALEDVMIVTH-EVDENLFLAARNLYKVDVRDVTAI 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 175 DPVSLIAFGKVVMTAEAVKQVEEML 199


>gi|78211927|ref|YP_380706.1| 50S ribosomal protein L4 [Synechococcus sp. CC9605]
 gi|109893649|sp|Q3AMN1|RL4_SYNSC RecName: Full=50S ribosomal protein L4
 gi|78196386|gb|ABB34151.1| 50S ribosomal protein L4 [Synechococcus sp. CC9605]
          Length = 211

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  ++   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MASCVVRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KT+ +        +   + ++I         + + RN+  + L+  
Sbjct: 121 VTVVQDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSDVVRRSVRNLEKVKLISA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LVL + A+  +++ +
Sbjct: 181 DQLNVFDLLHANALVLGEEALATIQEVY 208


>gi|15617117|ref|NP_240330.1| 50S ribosomal protein L4 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219682424|ref|YP_002468808.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|11134325|sp|P57590|RL4_BUCAI RecName: Full=50S ribosomal protein L4
 gi|254803722|sp|B8D848|RL4_BUCAT RecName: Full=50S ribosomal protein L4
 gi|25294987|pir||H84990 50S ribosomal protein L4 [imported] - Buchnera sp. (strain APS)
 gi|10039182|dbj|BAB13216.1| 50S ribosomal protein L4 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622157|gb|ACL30313.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086245|gb|ADP66327.1| 50S ribosomal protein L4 [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086822|gb|ADP66903.1| 50S ribosomal protein L4 [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087409|gb|ADP67489.1| 50S ribosomal protein L4 [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087904|gb|ADP67983.1| 50S ribosomal protein L4 [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 201

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+++      V+SVSE IFA    + ++ +V+   S   R G    K R+EV+ +G
Sbjct: 1   MELVVKDVQN----VLSVSEIIFARDFNEALIHQVVIAYSASTRQGTRAQKSRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+   S+     
Sbjct: 57  RKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQEHSQKVNKKMYRGALKSIFSELIRQK 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V +N      KTK LV + + ++L N  +I   ++D N  LA+RN+ ++++  V  I
Sbjct: 117 RLIVFENFSLDAPKTKLLVQKLKDINLKNV-LIVTNKIDNNLFLASRNLYSVDVKDVHSI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVSLIAFDHVVITVEAVKRIEEIL 200


>gi|239918198|ref|YP_002957756.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665]
 gi|281415611|ref|ZP_06247353.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665]
 gi|239839405|gb|ACS31202.1| LSU ribosomal protein L4P [Micrococcus luteus NCTC 2665]
          Length = 211

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 8/203 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M E SV+ +       + +  ++F ++    ++ +V+  Q    R G  K+K R EV+  
Sbjct: 1   MAENSVKTIQ------VDLPAELFDVQSNVPLMHQVVVAQLAAARQGTHKTKRRGEVSGA 54

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG   GP P       PKK+++ ALR ALSD+  +
Sbjct: 55  GRKPFKQKGTGRARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARN 114

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPV 178
             + V++ LVS     TK       +L+      ++   + D    L+ARN+P ++ L  
Sbjct: 115 GRVHVVEALVSGTTPSTKAAKAGLASLNTGRKNVLLVIDRADDVAALSARNLPAVHTLYA 174

Query: 179 QGINVYDILRCSKLVLSKSAIEA 201
             +N YD+L    +V +++A EA
Sbjct: 175 DQLNTYDVLVSDDVVFTQAAYEA 197


>gi|88807885|ref|ZP_01123396.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7805]
 gi|88787924|gb|EAR19080.1| 50S ribosomal protein L4 [Synechococcus sp. WH 7805]
          Length = 211

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  S+   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MANCVVRDWQGKEAGKASLDLKVAKETTALDLMHRAVLRQQAHSRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KT+ +        ++  + ++I         + + RN+  + L+  
Sbjct: 121 VTVVKDFGASLEAPKTREITDALGRLGIEADSKVLIVVGNPSEVLRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LVL + A+  +++ +
Sbjct: 181 NQLNVFDLLHANALVLGEEALATIQEVY 208


>gi|262280224|ref|ZP_06058008.1| ribosomal protein L4/L1e [Acinetobacter calcoaceticus RUH2202]
 gi|299768667|ref|YP_003730693.1| 50S ribosomal protein L4 [Acinetobacter sp. DR1]
 gi|262258002|gb|EEY76736.1| ribosomal protein L4/L1e [Acinetobacter calcoaceticus RUH2202]
 gi|298698755|gb|ADI89320.1| 50S ribosomal protein L4 [Acinetobacter sp. DR1]
          Length = 200

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 4/199 (2%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           +++ + G     + +SE  F  +  + ++ +V+       R G    K R++V+  G K 
Sbjct: 2   NLKTVSGSA---VELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRADVSGGGKKP 58

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + ++
Sbjct: 59  FRQKGTGRARAGSTRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLV 118

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           +++       KTK L+ +      +   +I    +D N  LAARN+P+++++    I+  
Sbjct: 119 LVEEFAIAAPKTKELLAKLGD-LNAARALIVTEAVDENLYLAARNLPHVDVVDATAIDPV 177

Query: 185 DILRCSKLVLSKSAIEALE 203
            ++   K+V+S +A + +E
Sbjct: 178 SLIAFDKVVMSVAAAKKIE 196


>gi|254525728|ref|ZP_05137780.1| ribosomal protein, L4/L1 family [Prochlorococcus marinus str. MIT
           9202]
 gi|221537152|gb|EEE39605.1| ribosomal protein, L4/L1 family [Prochlorococcus marinus str. MIT
           9202]
          Length = 210

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L     DG+  G +++   +        ++ R +  Q   KR G + +  RSEV   
Sbjct: 1   MTTLETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVSD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              +       K+ KT  +V       +  +  +++         + +  NI  + L+  
Sbjct: 121 MKAVEDFGSTLKQPKTSDIVNGLARLGIQKNEKVLVILDSPSDVIKKSINNIEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+DIL  +KLV+ +SAI+ +++ +
Sbjct: 181 DQLNVFDILNANKLVIGQSAIDKIQEVY 208


>gi|312795775|ref|YP_004028697.1| LSU ribosomal protein L1E (= L4P) [Burkholderia rhizoxinica HKI
           454]
 gi|312167550|emb|CBW74553.1| LSU ribosomal protein L1E (= L4P) [Burkholderia rhizoxinica HKI
           454]
          Length = 208

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 103/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G++   ++ S+ +F     + ++ +++       R G    K R +V +T 
Sbjct: 3   MELKLLNDQGQESAGVNASDIVFGRDYNEALIHQIVVAYQANARSGNRAQKDREQVKHTT 62

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +   LS     
Sbjct: 63  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFGQKVNKKMFRAGVCSILSQLARE 122

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V++++     KTK L  +F+A+    ++++    +D N  LA+RN+P++ ++  + 
Sbjct: 123 GRLSVVEDIKLDAPKTKLLAAKFKAMG-LESVLVITDTVDENLYLASRNLPHVAVVEPRY 181

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+  +E+  
Sbjct: 182 ADPLSLIYFKKVLVTKAAVAQIEELL 207


>gi|299139131|ref|ZP_07032307.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX8]
 gi|298598811|gb|EFI54973.1| ribosomal protein L4/L1e [Acidobacterium sp. MP5ACTX8]
          Length = 222

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 3/209 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  ++V NL G   G   + +++FA +  + +L   ++      R G   +K R  V+  
Sbjct: 1   MANINVVNLTGAKVGEFEL-DEVFAGEVNEALLWEAVKHYRASLRQGTHATKNRKLVSGA 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QKGTGRAR  S     +RGGG   GP P    +A P+K    ALR A++ K   
Sbjct: 60  GKKLWKQKGTGRARVGSIRTPLWRGGGTVHGPQPRSYEYAFPRKKLMGALRSAIASKIAD 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPV 178
               V++N    E KTK   T    L+     ++     QL     L +RN+  + L+  
Sbjct: 120 GKFTVVENFDVSEGKTKLYRTALNKLEAKKTALLVETSQQLSEKLYLGSRNLQGVELVLS 179

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207
             ++ YD+L+    + SKSA+EAL++  K
Sbjct: 180 SEVHPYDLLKYEHAIFSKSALEALQETLK 208


>gi|237755897|ref|ZP_04584490.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691947|gb|EEP60962.1| ribosomal protein, L4/L1 family [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 208

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/206 (35%), Positives = 120/206 (58%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V N   E  G +++ EDIF  +  QG +  V++W    KR G + +K R+EVA + 
Sbjct: 1   MEFNVVNNKNEVVGKVNLKEDIFKTEVNQGTVWEVIKWHLASKRAGTASTKTRAEVAGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTGRARH  +  + F GGG A GP P     ALPKKVR   L+  L+ K  +N
Sbjct: 61  RKIYPQKGTGRARHGDRKANIFVGGGVAHGPHPRDYYFALPKKVRRKVLKGVLTYKLNNN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +++V+++   +  KTK  +   ++    ++ +++   +   N   + RNIP + +L  +G
Sbjct: 121 ELIVVEDFNFEAPKTKNAIEVLKSFGLENSKVLLVLPEKLENVIKSFRNIPKVKILLAEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN YD+L   K+++ KSA+E +++R 
Sbjct: 181 INSYDVLNNDKVIIFKSALEKIQERL 206


>gi|300782609|ref|YP_003762900.1| 50S ribosomal protein L4 [Amycolatopsis mediterranei U32]
 gi|299792123|gb|ADJ42498.1| large subunit ribosomal protein L4 [Amycolatopsis mediterranei U32]
          Length = 229

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + ++   G+  G + + E+IF ++    ++ +V+  Q    R G   +K R EV   
Sbjct: 1   MTSVELKTPAGKADGTVDLPEEIFDVQANVALMHQVVVAQQAAARQGTHDTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQFAGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARA 120

Query: 121 NDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             +  V + +  ++  TK       A+ L+  +++   + D    ++ RN+P +++L   
Sbjct: 121 GQLHVVTELVTGEKPNTKVAKAALAAVTLAKRVLVVLHRDDELSWVSLRNLPEVHILWAD 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N YD+L    +V +K+A +A 
Sbjct: 181 QLNTYDVLVNDDVVFTKAAYDAF 203


>gi|288925714|ref|ZP_06419646.1| ribosomal protein L4/L1 family protein [Prevotella buccae D17]
 gi|288337652|gb|EFC76006.1| ribosomal protein L4/L1 family protein [Prevotella buccae D17]
          Length = 209

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+SV ++ G++ G  ++++E I+ L+P + +L   ++     +R G +KSK RSE+  +
Sbjct: 1   MEVSVLDIKGQETGRKVTLNESIYGLEPNEHVLYLDVKQYLANQRQGTAKSKERSEINGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR          GGG+ FGP P      L KKV+ LA + ALSDK   
Sbjct: 61  TRKLGRQKGGGGARRGDIKSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKLALSDKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++   +  KTK  +   +         ++     ++N  L+ARN+    ++P  
Sbjct: 121 NAIVVVEDFDIETPKTKDFINIAKNLKVDGRKTLLLLPTANKNVYLSARNLQRTEVMPAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L    LV+++SA++ +++  
Sbjct: 181 MLNSYKVLNADVLVIAESALKVIDEIL 207


>gi|300775015|ref|ZP_07084878.1| ribosomal protein L4/L1 family protein [Chryseobacterium gleum ATCC
           35910]
 gi|300506830|gb|EFK37965.1| ribosomal protein L4/L1 family protein [Chryseobacterium gleum ATCC
           35910]
          Length = 209

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 107/208 (51%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N  G++ G  +++ E +F ++P Q  +   ++     +R G  K+K RSE+  +
Sbjct: 1   MELVVLNTSGKETGRKVTLDETVFGIEPNQHAVYLEVKQYLAAQRQGTHKAKERSEITAS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G AR+       FRGGG+ FGP P      L K ++ LA +  LS K   
Sbjct: 61  TKKLKKQKGSGSARYGDIKSPVFRGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I V++++     KTK  +    AL+      +    + ++N  L++RN+P   ++   
Sbjct: 121 NSIKVLEDMSFAAPKTKDFINVLNALELNGKKSLFVLPEANKNVYLSSRNLPKAKVMNFN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            I+ YD++   +++  + A+E  ++  K
Sbjct: 181 EISSYDLVNAGEIIFFEGAVEKFQENLK 208


>gi|305665136|ref|YP_003861423.1| 50S ribosomal protein L4 [Maribacter sp. HTCC2170]
 gi|88709888|gb|EAR02120.1| 50S ribosomal protein L4 [Maribacter sp. HTCC2170]
          Length = 209

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  + +S+++FA++P    +   ++     +R G  K+K R E+  +
Sbjct: 1   MKVAVLDIKGKETGRKVDLSDNVFAIEPNNHAIYLDVKQYLAHQRQGTHKAKERGEIVGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K V+ LA + ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPIFRGGGRIFGPRPKDYSQKLNKNVKRLARKSALSIKTKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             +MV+++   +  KTK  V   ++L   +   +      +    L++RN+    ++   
Sbjct: 121 KAVMVVEDFDLETPKTKDFVQILKSLGLENKKSLFVLGDSNNGVYLSSRNLERSEVVINS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALE 203
            ++ Y IL  + +VL + ++E +E
Sbjct: 181 ELSTYKILNANNIVLLEGSLEGIE 204


>gi|119899705|ref|YP_934918.1| 50S ribosomal protein L4 [Azoarcus sp. BH72]
 gi|166234632|sp|A1KB26|RL4_AZOSB RecName: Full=50S ribosomal protein L4
 gi|119672118|emb|CAL96032.1| 50S ribosomal protein L4 [Azoarcus sp. BH72]
          Length = 206

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + N  G+    +  S+ +FA +  + ++ +V+       R G    KGRSE+A + 
Sbjct: 1   MELKLLNEQGQPASTLDASDVLFAREYNEALVHQVVTAYLANARSGNRAQKGRSEIAKST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTG AR    S   +RGGGK F   P       + +K+    +   LS     
Sbjct: 61  RKPFRQKGTGNARAGMASSPLWRGGGKIFPNSPDENFSQKVNRKMYRAGVAAILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + + V+DN   +  KT+ L  + + +   +++++    LD N  L++RN+  + +L V  
Sbjct: 121 DRLAVVDNFSVEAPKTRLLAEKLKGMG-LDSVLVITDGLDENLFLSSRNLHKVLVLDVHE 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   ++R  K++++K A+  +E+ ++
Sbjct: 180 TDPVSLVRFPKVLVTKGALAKMEEAWQ 206


>gi|325856055|ref|ZP_08171944.1| 50S ribosomal protein L4 [Prevotella denticola CRIS 18C-A]
 gi|327313191|ref|YP_004328628.1| 50S ribosomal protein L4 [Prevotella denticola F0289]
 gi|325483727|gb|EGC86691.1| 50S ribosomal protein L4 [Prevotella denticola CRIS 18C-A]
 gi|326946137|gb|AEA22022.1| 50S ribosomal protein L4 [Prevotella denticola F0289]
          Length = 209

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 110/203 (54%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  ++++E+IF ++P   +L   ++     +R G +KSK RSE A +
Sbjct: 1   MDINVLDIKGQETGRKVTLNENIFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + AL+ K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALTYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  V   +        L++   ++++N  L+ARN+    ++   
Sbjct: 121 NAIVVVEDFNLDAPKTKDFVNIAKNLKVDGKKLLLVLPEVEKNVYLSARNLQKTEVMTAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +L    LV+++++++ +
Sbjct: 181 QVNSYKVLNADVLVVTENSLKVI 203


>gi|260222804|emb|CBA32728.1| 50S ribosomal protein L4 [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 206

 Score =  169 bits (428), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ + N  G+        E +F     + ++ +V+       R G    K R +V ++ 
Sbjct: 1   MQVELLNEQGQATSKYDAPEAVFGRDYNEDLVHQVVVAFQANARQGTRAQKDREQVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFGQKINKKMYRAGMASILSQLVRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L  +  KTK L  +F+A++   ++++   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSLKVESPKTKALAAKFKAMN-LESVLVIADEVDENLYLASRNLVNVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A++ L++ F
Sbjct: 180 ADPLSLVHYRKVLVTKAAMDTLKEMF 205


>gi|239817872|ref|YP_002946782.1| 50S ribosomal protein L4 [Variovorax paradoxus S110]
 gi|319796216|ref|YP_004157856.1| ribosomal protein l4/l1e [Variovorax paradoxus EPS]
 gi|259491580|sp|C5CP52|RL4_VARPS RecName: Full=50S ribosomal protein L4
 gi|239804449|gb|ACS21516.1| ribosomal protein L4/L1e [Variovorax paradoxus S110]
 gi|315598679|gb|ADU39745.1| ribosomal protein L4/L1e [Variovorax paradoxus EPS]
          Length = 206

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+        E +F     + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNEQGQAASKYDAPETVFGRDYNEDLVHQIVVAFQANARQGTRAQKDREQVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F  +P       + KK+    +    S     
Sbjct: 61  KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFSQKINKKMYRAGMAAIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L     KTK L  RF+A++   ++++   ++D N  LA+RN+ NI ++  + 
Sbjct: 121 GRLAVVDSLTVDSPKTKPLAARFKAMN-LESVLVIAEEVDENLYLASRNLVNILVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K A++ L++ F
Sbjct: 180 ADPVSLVHYKKVLVTKGAVDKLKEMF 205


>gi|113952777|ref|YP_729666.1| 50S ribosomal protein L4 [Synechococcus sp. CC9311]
 gi|122945812|sp|Q0ID06|RL4_SYNS3 RecName: Full=50S ribosomal protein L4
 gi|113880128|gb|ABI45086.1| ribosomal protein L4 [Synechococcus sp. CC9311]
          Length = 211

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  S+   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MANCIVRDWQGKEAGKASLDLKVAKEASALDLMHRAVLRQQAHSRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R  ALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARIED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KTK ++       +  ++ ++I         + + RN+  + L+  
Sbjct: 121 LVVVKDFATTLTTPKTKEIIDALGRLDVSATSKVLIILTNPSEAVRRSIRNLETVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  +KLV+ + A+  +++ +
Sbjct: 181 DQLNVFDLLHANKLVVGEDALAKIQEVY 208


>gi|227549827|ref|ZP_03979876.1| 50S ribosomal protein L4 [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078082|gb|EEI16045.1| 50S ribosomal protein L4 [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 221

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V   DG+  G + +  ++F  +    ++ +V+  Q    R G   +K R  V   G 
Sbjct: 5   TLDVHTADGKTNGSVDLPAELFDREASIPLMHQVVVAQQAAARQGTHATKTRGMVRGGGK 64

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG   GP P       PKK+   AL  AL+D+   + 
Sbjct: 65  KPFRQKGTGRARQGSIRAPHYTGGGIVHGPQPRSYAQRTPKKMIKAALAGALTDRARGSR 124

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I +++ LV  +   TK        L    ++++   + D N +L+ARN+P +++L    +
Sbjct: 125 IHIVEELVPGQTPSTKSARAFIERLTDRKSVLLVIGREDVNSRLSARNLPGVHILEPSQL 184

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L    +V S  A+   
Sbjct: 185 NTYDVLNADDVVFSVEALHTF 205


>gi|313206394|ref|YP_004045571.1| LSU ribosomal protein l4p [Riemerella anatipestifer DSM 15868]
 gi|312445710|gb|ADQ82065.1| LSU ribosomal protein L4P [Riemerella anatipestifer DSM 15868]
 gi|315023665|gb|EFT36669.1| LSU ribosomal protein L4p (L1e) [Riemerella anatipestifer RA-YM]
 gi|325336161|gb|ADZ12435.1| Ribosomal protein L4 [Riemerella anatipestifer RA-GD]
          Length = 209

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 108/208 (51%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL V N+ G++ G  +S+ E IF ++P Q  +   ++     +R G  K+K RSE+  +
Sbjct: 1   MELVVLNIQGKETGRKVSLDEAIFGIEPNQHAVYLEIKQYLAAQRQGTHKAKERSEITAS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G AR+       F+GGG+ FGP P      L K ++ LA +  LS K   
Sbjct: 61  TKKLKKQKGSGSARYGDIKSPVFKGGGRVFGPKPRDYRFKLNKALKRLAKKSVLSQKMRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N++ V+++   +  KTK  +    AL       +    + ++N  L++RN+P   ++   
Sbjct: 121 NNVKVLEDFSFETPKTKEFINVVNALGLEGKKSLFVLGEANKNVYLSSRNLPKAKVMNFN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            I+ YD++   ++V  + A+E  ++  +
Sbjct: 181 EISSYDLVNAGEVVFLEGAVEKFQENLR 208


>gi|91200668|emb|CAJ73719.1| strongly similar to 50S ribosomal protein L4 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 203

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/202 (30%), Positives = 110/202 (54%), Gaps = 1/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ V N +G+    + V + I     +  +L  V++     KR G   +K R+EV+  G
Sbjct: 1   MEIIVYNDEGKKIENMQVPDSISDSPVRYKLLRDVVKMYEANKRQGTVSTKTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QK TG+AR  S     +RGGG AFGP P    +++PK  +  AL  ALS K   N
Sbjct: 61  KKPWAQKHTGKARAGSSRSPIWRGGGVAFGPKPRDYSYSIPKMAKKQALFSALSSKIKDN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +++V+D L     KTK++V+  ++  +   + +I   +   +   ++RNIP + ++    
Sbjct: 121 EVVVVDKLDFASPKTKHMVSLLKSFGMVGISSLIVISKATESLLKSSRNIPYVRMMECHD 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N Y+IL+  K++++K A+ +L
Sbjct: 181 LNAYEILKPKKILITKQALSSL 202


>gi|308233853|ref|ZP_07664590.1| LSU ribosomal protein L4P [Atopobium vaginae DSM 15829]
 gi|328943561|ref|ZP_08241026.1| 50S ribosomal protein L4 [Atopobium vaginae DSM 15829]
 gi|327491530|gb|EGF23304.1| 50S ribosomal protein L4 [Atopobium vaginae DSM 15829]
          Length = 208

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V+N++G+    + +S D+F ++P   ++ +V+       R G   +K RS V+  
Sbjct: 1   MSKIEVKNVEGKSADTLELSSDVFGIEPNIPVVHQVVVAYEACLRQGTHSTKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +    Q+ GGG  FGP P         K + LA++  LS K   
Sbjct: 61  GVKPFRQKGTGRARQGTIRAPQWVGGGVVFGPTPHSHALRSNNKEKKLAMKSVLSGKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +++V+D    ++  TK      +AL+  +  + +     D    L+ RN+P + +    
Sbjct: 121 GELIVLDKFAFEKASTKQAAAIIKALELQNKRVTLVVDDDDVETYLSFRNLPKVVIYASS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N   ++  + LV++    + LE+  
Sbjct: 181 EVNTRILVDNAALVMTVDVAKQLEEAL 207


>gi|330752349|emb|CBL87302.1| ribosomal protein L4 [uncultured Sphingobacteria bacterium]
          Length = 208

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L + N  G + G  +++ ++IF ++P    +   ++     KR G   S  + +V  +
Sbjct: 1   MKLKIVNTSGAETGKEVTLPKEIFGVEPNDHAIYLDVKQHLANKRSGTHSSTEKGDVRGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+  GP P      L KK++ +A   ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFRGGGRMHGPRPRDYRFKLNKKLKLVARASALSYKAKD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN-ALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +IMVID +     KTK  ++   +L +++   ++     ++N  L++RNIPN  ++   
Sbjct: 121 KEIMVIDQISMDSVKTKGYLSVLTSLKMNDKKTLLLVPDYNKNVYLSSRNIPNAQVMKAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y+IL  + ++L + AI+ L++ F
Sbjct: 181 DVNTYNILNANNIILEEGAIDKLKELF 207


>gi|260549839|ref|ZP_05824055.1| ribosomal protein L4/L1e [Acinetobacter sp. RUH2624]
 gi|293610825|ref|ZP_06693125.1| 50S ribosomal protein L4 [Acinetobacter sp. SH024]
 gi|260407089|gb|EEX00566.1| ribosomal protein L4/L1e [Acinetobacter sp. RUH2624]
 gi|292827169|gb|EFF85534.1| 50S ribosomal protein L4 [Acinetobacter sp. SH024]
 gi|325123603|gb|ADY83126.1| 50S ribosomal protein L4 [Acinetobacter calcoaceticus PHEA-2]
          Length = 200

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 4/199 (2%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           +++ + G     + +SE  F  +  + ++ +V+       R G    K R++V+  G K 
Sbjct: 2   NLKTVSGSA---VELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRADVSGGGKKP 58

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + ++
Sbjct: 59  FRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLV 118

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           +++       KTK L+ +      +   +I    +D N  LAARN+P+++++    I+  
Sbjct: 119 LVEEFAVAAPKTKELLAKLND-LNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPV 177

Query: 185 DILRCSKLVLSKSAIEALE 203
            ++   K+V+S +A + +E
Sbjct: 178 SLIAFDKVVMSVAAAKKIE 196


>gi|124023996|ref|YP_001018303.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9303]
 gi|166199842|sp|A2CC28|RL4_PROM3 RecName: Full=50S ribosomal protein L4
 gi|123964282|gb|ABM79038.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9303]
          Length = 211

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M E  V +  G++ G  S+   +        ++ R +  Q    R G + +  R+EV   
Sbjct: 1   MAECVVHDWQGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  +       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARLED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       K  KT+ +        +     ++I         + + RN+  + L+  
Sbjct: 121 VIVVKDFGDSLKAPKTREISDALVRLGVAADAKVLIILSTPSEIIRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LVLS+ A+  +++ +
Sbjct: 181 DQLNVFDLLHANSLVLSEEALAKIQEVY 208


>gi|89902554|ref|YP_525025.1| 50S ribosomal protein L4 [Rhodoferax ferrireducens T118]
 gi|109893628|sp|Q21RV9|RL4_RHOFD RecName: Full=50S ribosomal protein L4
 gi|89347291|gb|ABD71494.1| LSU ribosomal protein L4P [Rhodoferax ferrireducens T118]
          Length = 206

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 102/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G         E +F     + ++ +++       R G    K R +V ++ 
Sbjct: 1   MQLELLNDQGLATAKYEAPETVFGRAYNEDLVHQIVVAFQANARQGTRAQKDREQVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F  +P       + KK+    +   LS     
Sbjct: 61  KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTQKINKKMYRAGMASILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D++     KTK L  +F+A++   ++++   ++D N  LA+RN+ N+ ++  + 
Sbjct: 121 GRLAVVDSMKVDSPKTKPLAAKFKAMN-LESVLVIADEVDENLYLASRNLVNVLVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A+E L++ F
Sbjct: 180 ADPVSLVHYRKVIVTKAAMEKLQEMF 205


>gi|260436231|ref|ZP_05790201.1| ribosomal protein, L4/L1 family [Synechococcus sp. WH 8109]
 gi|260414105|gb|EEX07401.1| ribosomal protein, L4/L1 family [Synechococcus sp. WH 8109]
          Length = 211

 Score =  169 bits (427), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  ++   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MASCVVRDWQGKEAGKATLDLKVAKETTAVDLMHRAVLRQQAHARQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLKPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARIED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KT+ +        +   + ++I         + + RN+  + L+  
Sbjct: 121 VTVVKDFGASLEAPKTREITDALGRLGVAAGSKVLIVLTNPSDVVRRSVRNLEKVKLISA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LVL + A+  +++ +
Sbjct: 181 DQLNVFDLLHANALVLGEEALATIQEVY 208


>gi|325269534|ref|ZP_08136150.1| 50S ribosomal protein L4 [Prevotella multiformis DSM 16608]
 gi|324988153|gb|EGC20120.1| 50S ribosomal protein L4 [Prevotella multiformis DSM 16608]
          Length = 209

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G  ++++E++F ++P   +L   ++     +R G +KSK RSE A +
Sbjct: 1   MDINVLDIKGQETGRKVTLNENVFGIEPNDHVLYLAVKQYLADQRQGTAKSKERSEHAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR    +     GGG+ FGP P      L KKV+ LA + AL+ K   
Sbjct: 61  TRKLGRQKGGGGARRGDINSPVLVGGGRVFGPKPRDYSFKLNKKVKVLARKSALAYKAQE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK  V   +        +++    +++N  L+ARN+    ++   
Sbjct: 121 NAIVVVEDFDFDAPKTKDFVNIAKNLKVDGKKILLLLPGVEKNVYLSARNLQKTEVMTAA 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y IL    LV+++++++ +
Sbjct: 181 QVNSYKILNADVLVVTENSLKVI 203


>gi|212704584|ref|ZP_03312712.1| hypothetical protein DESPIG_02646 [Desulfovibrio piger ATCC 29098]
 gi|212671983|gb|EEB32466.1| hypothetical protein DESPIG_02646 [Desulfovibrio piger ATCC 29098]
          Length = 207

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V + + ++ G +++S D+F ++ +  IL  V+R Q   KR G   +K R+ V+  
Sbjct: 1   MATVKVYDQNKQECGELTLSADVFEVEARPEILNLVVRAQMAAKRAGTHMAKTRAFVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +RGG   FGP P      +  KVR+LA++ ALS +  +
Sbjct: 61  GVKPWKQKGTGRARSGSNRSPVWRGGAIVFGPQPRDYSFKVNSKVRALAMKMALSSRLAA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+  +   E KTK+   +       N  +I   +       +ARNIP I L     
Sbjct: 121 ENLLVVKGIELPEAKTKHF-AKVAGTLGLNKALIVTAEESEALTRSARNIPGITLTTPDR 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++V +ILR  +LVL + A+  ++ RF
Sbjct: 180 LSVLEILRHKQLVLLEGAVAPVQARF 205


>gi|223936427|ref|ZP_03628339.1| ribosomal protein L4/L1e [bacterium Ellin514]
 gi|223894945|gb|EEF61394.1| ribosomal protein L4/L1e [bacterium Ellin514]
          Length = 208

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 103/208 (49%), Gaps = 6/208 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQ---QGILARVLRWQSWRKRIGCSKSKGRSEVA 58
           ++L ++++ G  +G + V    F+L         +   +      +R G + +K   EVA
Sbjct: 1   MKLKIQDIKGNSQGEMDVK---FSLVTNGRGTQAVHDAVVAYRAAQRSGTACAKTVGEVA 57

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
            +  K + QKGTGRAR  S     +RGGG  FGP P      + +  + LA R AL+++ 
Sbjct: 58  GSNKKPWKQKGTGRARAGSVRSPLWRGGGVVFGPRPRDFSKKISRSTKQLAFRKALTERL 117

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            + D++V+DN      KTK  V    AL +    ++    LD N   A+RN+  + +   
Sbjct: 118 NAGDVLVVDNFKLASAKTKEFVGVLTALKVEGTALVVADALDANLSRASRNVAKVEVATS 177

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +N Y ILR  KLV ++SA E +E+R 
Sbjct: 178 DSVNTYQILRSDKLVFTRSAFEKVEERL 205


>gi|30248419|ref|NP_840489.1| 50S ribosomal protein L4 [Nitrosomonas europaea ATCC 19718]
 gi|46577228|sp|Q82X87|RL4_NITEU RecName: Full=50S ribosomal protein L4
 gi|30138305|emb|CAD84313.1| Ribosomal protein L4/L1e [Nitrosomonas europaea ATCC 19718]
          Length = 206

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 3/208 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+++     +G+    I  SE +F     + ++ +V++      R G    KGRS+V  +
Sbjct: 1   MVKIPCIYENGQ-IEDIEASESVFGRVYNEALVHQVVKSYLANARAGTRAQKGRSDVTGS 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
             K + QKGTGRAR  + +   +RGGGK F   P       L +K+    +    S+   
Sbjct: 60  TRKQWRQKGTGRARTGAATNPLWRGGGKIFPNKPTENFKQKLNRKMYRAGMCTIFSELLR 119

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +N ++ ID    +  KTK  + + +   L N +II   ++D N  LA+RN+PN+ ++ V 
Sbjct: 120 NNKLVAIDEFQIEMPKTKVCLQKLKNYQLENVMII-TSEIDSNLYLASRNLPNLKVVEVD 178

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            I+   +L    +V+++  +  +E+  +
Sbjct: 179 LIDPVSLLAYDNVVITRDTVNKIENVLQ 206


>gi|167519925|ref|XP_001744302.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777388|gb|EDQ91005.1| predicted protein [Monosiga brevicollis MX1]
          Length = 229

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/196 (38%), Positives = 106/196 (54%), Gaps = 1/196 (0%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
              GV+ +   +F  + +  I+ RV+ WQ    R G +K+K R EV   G K + QKGTG
Sbjct: 11  AQVGVMELDPTVFGEEIRVDIMHRVVVWQRALWRKGNAKTKTRGEVRGGGRKPHPQKGTG 70

Query: 72  RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           RAR  S  V  +RGGG   GP+P      LP+KVR   +R A+S ++  ND++++D+LV 
Sbjct: 71  RARTGSIRVPNWRGGGVVHGPIPRDWSQKLPRKVRQKGVRVAISTRYQQNDLVIVDDLVL 130

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQLDRN-FQLAARNIPNINLLPVQGINVYDILRCS 190
              KTK L        L +AL + G   D    + A RN+P  +     G +VY+IL+  
Sbjct: 131 PTLKTKSLAEIAAQHRLESALFVYGHDEDSMNLKWACRNMPAFHATSAAGAHVYNILKHD 190

Query: 191 KLVLSKSAIEALEDRF 206
           KLVLS SA+  LE R 
Sbjct: 191 KLVLSVSAVRDLERRL 206


>gi|149371630|ref|ZP_01891046.1| 50S ribosomal protein L4 [unidentified eubacterium SCB49]
 gi|149355257|gb|EDM43817.1| 50S ribosomal protein L4 [unidentified eubacterium SCB49]
          Length = 209

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V + +G+     + +S++++ ++P    +   ++     +R G  K+K R+E+A +
Sbjct: 1   MKVAVLDKNGKATSRKVELSKEVYGIEPNNHAVYLDVKQYLANQRQGTHKAKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L K ++ LA + AL+ K  S
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYTFKLNKNLKRLARKSALTLKANS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++L     KTK      + L       +    + + N  L++RN+  + ++   
Sbjct: 121 ESILVLEDLNFDTPKTKDFTAVLKGLGLSGKKSLFVLGESNNNVYLSSRNLSGVEVIKAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALE 203
            ++ Y I+  + +VL + ++E +E
Sbjct: 181 ELSTYKIMNANNVVLFEGSLEGIE 204


>gi|118602214|ref|YP_903429.1| 50S ribosomal protein L4P [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|166199859|sp|A1AVK1|RL4_RUTMC RecName: Full=50S ribosomal protein L4
 gi|118567153|gb|ABL01958.1| LSU ribosomal protein L4P [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 204

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V N+       I V++ +FA    Q ++ +V        R G    K RS V+   
Sbjct: 1   MKFKVLNISTNKSSTIEVADTVFARGFNQALVHQVTTAYMSGGRQGSKAQKNRSTVSGGS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +R GG  F   P      + KK+   A+    S+   S 
Sbjct: 61  KRPWAQKGTGRARAGTTRGPIWRSGGVTFSAAPRGYAQKVNKKMYKGAISVIFSELARSE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V+     KE KTK +    +AL++ + L++   +LD N  L++RN+ ++ +  +Q I
Sbjct: 121 RLKVVSEFNIKEIKTKNITALLKALNVKDVLLM-TDELDENLYLSSRNLYHVGVCDIQSI 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V+++ A++ +E   
Sbjct: 180 DPVSLIGYDNVVVTEIALKKIEAML 204


>gi|262377311|ref|ZP_06070535.1| ribosomal protein L4/L1 [Acinetobacter lwoffii SH145]
 gi|262307764|gb|EEY88903.1| ribosomal protein L4/L1 [Acinetobacter lwoffii SH145]
          Length = 200

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL+      + +SE  F  +  + ++ +V+       R G    K R++V+  G K + Q
Sbjct: 2   NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGRKPFRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + +++++
Sbjct: 62  KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                  KTK L+ +      +   +I    +D N  LAARNIP+++++    I+   ++
Sbjct: 122 EFAVAAPKTKELLAKLND-LNATRALIVTDAVDENLYLAARNIPHVDVVDAAAIDPVSLI 180

Query: 188 RCSKLVLSKSAIEALE 203
              K+V+S +A + +E
Sbjct: 181 AFDKVVMSVAAAKKIE 196


>gi|289706534|ref|ZP_06502884.1| ribosomal protein L4/L1 family protein [Micrococcus luteus SK58]
 gi|289556669|gb|EFD50010.1| ribosomal protein L4/L1 family protein [Micrococcus luteus SK58]
          Length = 211

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 101/203 (49%), Gaps = 8/203 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M E SV+ +       + +  ++F ++    ++ +V+  Q    R G  K+K R EV+  
Sbjct: 1   MAENSVKTIQ------VDLPVELFDVQSNVPLMHQVVVAQLAAARQGTHKTKRRGEVSGA 54

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S       GGG   GP P       PKK+++ ALR ALSD+  +
Sbjct: 55  GRKPFKQKGTGRARQGSIRAPHMTGGGVVHGPTPRDYSQRTPKKMKAAALRGALSDRARN 114

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPV 178
             + VI+ LVS     TK       +L+      ++   + D    L+ARN+P ++ L  
Sbjct: 115 GRVHVIEALVSGTTPSTKAAKAGLASLNTGRKNVLLVIDRADDVAALSARNLPAVHTLYA 174

Query: 179 QGINVYDILRCSKLVLSKSAIEA 201
             +N YD+L    +V +++A EA
Sbjct: 175 DQLNTYDVLVSDDVVFTQAAYEA 197


>gi|110180288|gb|ABG54387.1| 23S ribosomal protein L4 [Brucella ceti]
          Length = 176

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 99/206 (48%), Positives = 134/206 (65%), Gaps = 30/206 (14%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR       
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGR------- 53

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
                                  GGG+A GPV     H LPKKV +L LRHALS K  ++
Sbjct: 54  -----------------------GGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKAS 90

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA NIPNI++LPVQGI
Sbjct: 91  DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAASNIPNIDVLPVQGI 150

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           NVYDILR  KLVLSK+A+EALE+RFK
Sbjct: 151 NVYDILRRGKLVLSKAAVEALEERFK 176


>gi|157414162|ref|YP_001485028.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9215]
 gi|166990951|sp|A8G761|RL4_PROM2 RecName: Full=50S ribosomal protein L4
 gi|157388737|gb|ABV51442.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9215]
          Length = 210

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L     DG+  G +++   +        ++ R +  Q   KR G + +  RSEV   
Sbjct: 1   MTTLETLKWDGKKSGKVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRVSD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              +       K+ KT  ++       +  +  +++         + +  NI  + L+  
Sbjct: 121 MKAVEDFGSTLKQPKTSDIINGLARLGIQKNEKVLVILDSPSDVIKKSINNIEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+DIL  +KL++ +SAI+ +++ +
Sbjct: 181 DQLNVFDILNANKLLIGQSAIDKIQEVY 208


>gi|123966972|ref|YP_001012053.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9515]
 gi|166199843|sp|A2BYT5|RL4_PROM5 RecName: Full=50S ribosomal protein L4
 gi|123201338|gb|ABM72946.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9515]
          Length = 210

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L     DG+  G +S+   +        ++ R +  Q   +R G + +  RSEV   
Sbjct: 1   MTTLETLKWDGKKVGKVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRVDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              +        + KT  ++       ++ +  +++         + +  NI  + L+  
Sbjct: 121 IKAVEDFGSTLNQPKTSEIINGLSRLGIEKTEKVLVILDSPSEVIKKSINNIAKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+DIL  +KLV+ +SAI  +++ +
Sbjct: 181 DQLNVFDILNANKLVIGQSAINKIQEVY 208


>gi|33862113|ref|NP_893674.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|46577194|sp|Q7UZU8|RL4_PROMP RecName: Full=50S ribosomal protein L4
 gi|33634331|emb|CAE20016.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
          Length = 210

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L     DG+  G +S+   +        ++ R +  Q   KR G + +  RSEV   
Sbjct: 1   MTTLETLKWDGKKAGKVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRISD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              +        + KT  ++       ++ +  +++         + +  N+  + L+  
Sbjct: 121 FKTVEDFGSTLDQPKTSEIINGLSRLGIEKTEKVLVILDNPSDVIKKSINNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+DIL  +KLV+ +SAI  +++ +
Sbjct: 181 DQLNVFDILNANKLVIGQSAINKIQEVY 208


>gi|219681869|ref|YP_002468255.1| 50S ribosomal protein L4 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471574|ref|ZP_05635573.1| 50S ribosomal protein L4 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254803721|sp|B8D9U6|RL4_BUCA5 RecName: Full=50S ribosomal protein L4
 gi|219624712|gb|ACL30867.1| 50S ribosomal protein L4 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 201

 Score =  168 bits (426), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+++      V+SVSE IFA    + ++ +V+   S   R G    K R+EV+ +G
Sbjct: 1   MELVVKDVQN----VLSVSEIIFARDFNEALIHQVVIAYSASTRQGTRAQKSRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+   S+     
Sbjct: 57  RKPWRQKGTGRARAGSFRSPIWRSGGVTFAAKPQEHSQKVNKKMYRGALKSIFSELIRQK 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V +N      KTK LV + + ++L N  +I   ++D N  LA+RN+ ++++  V  I
Sbjct: 117 RLIVFENFSLNAPKTKLLVQKLKDINLKNV-LIVTNKIDNNLFLASRNLYSVDVKDVHSI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVSLIAFDHVVITVEAVKRIEEIL 200


>gi|78780034|ref|YP_398146.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9312]
 gi|109893618|sp|Q318I5|RL4_PROM9 RecName: Full=50S ribosomal protein L4
 gi|78713533|gb|ABB50710.1| LSU ribosomal protein L4P [Prochlorococcus marinus str. MIT 9312]
          Length = 210

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +     DG+  G + +   +        ++ R +  Q   KR G + +  RSEV   
Sbjct: 1   MTTIETLKWDGKKSGEVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRSYNLDMNRKERRLALRTALMSRISD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              +       K+ KT  ++       +  +  +++         + +  NI  + L+  
Sbjct: 121 VKAVEDFGSTLKQPKTSDIINGLTRLGIQKTEKVLVILDSPSEVIKKSINNIEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+DIL  +KLV+ +SAI  +++ +
Sbjct: 181 DQLNVFDILNANKLVIGQSAINKIKEVY 208


>gi|33864000|ref|NP_895560.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9313]
 gi|46577197|sp|Q7V541|RL4_PROMM RecName: Full=50S ribosomal protein L4
 gi|33635584|emb|CAE21908.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. MIT 9313]
          Length = 211

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M E  V +  G++ G  S+   +        ++ R +  Q    R G + +  R+EV   
Sbjct: 1   MAECVVHDWQGKEAGKASLELKVSKETTAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  +       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGTIRTPLRPGGGIIFGPKPRTYNLAMNRKERRLALRTALMARIED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       K  KT+ +        L     ++I         + + RN+  + L+  
Sbjct: 121 VIVVKDFGNSLKVPKTREISDALIRLGLAADAKVLIILSTPSEIIRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LVLS+ A+  +++ +
Sbjct: 181 DQLNVFDLLHANSLVLSEEALAKIQEVY 208


>gi|262373520|ref|ZP_06066798.1| ribosomal protein L4/L1 [Acinetobacter junii SH205]
 gi|262311273|gb|EEY92359.1| ribosomal protein L4/L1 [Acinetobacter junii SH205]
          Length = 200

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 1/196 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL       + +SE  F  +  + ++ +V+       R G    K R++V+  G K + Q
Sbjct: 2   NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + +++++
Sbjct: 62  KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                  KTK L+ +      +   +I    +D N  LAARN+P+++++    I+   ++
Sbjct: 122 EFAVAAPKTKELLAKLND-LNATRALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 180

Query: 188 RCSKLVLSKSAIEALE 203
              K+V+S +A + +E
Sbjct: 181 AFDKVVMSVAAAKKIE 196


>gi|86141141|ref|ZP_01059687.1| 50S ribosomal protein L4 [Leeuwenhoekiella blandensis MED217]
 gi|85831700|gb|EAQ50155.1| 50S ribosomal protein L4 [Leeuwenhoekiella blandensis MED217]
          Length = 209

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V ++ G++ G   ++S+ +FA++P    +   ++     KR G  KSK R+E+A +
Sbjct: 1   MKVAVVDIKGKETGREANLSDSVFAIEPNDHAIYLDVKQHLANKRQGTHKSKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L K ++ LA R AL+ K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYSFKLNKGLKRLARRSALTLKAND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I V+++   +  KTK  V    AL   +   +      + N  L++RN+    ++   
Sbjct: 121 KAITVVEDFNFETPKTKNFVDVVTALGLDNKKSLFVLGASNNNVYLSSRNLKTSEVITSS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y I+  + +V  + ++E +E   
Sbjct: 181 ELSTYKIMNANNVVFLEGSLEEIEQTL 207


>gi|307823443|ref|ZP_07653672.1| ribosomal protein L4/L1e [Methylobacter tundripaludum SV96]
 gi|307735428|gb|EFO06276.1| ribosomal protein L4/L1e [Methylobacter tundripaludum SV96]
          Length = 206

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           + L +  L+ +   G + V+E IF     + ++ +++       R G    K RS+V+  
Sbjct: 1   MSLQIPALNEQDSSGSLEVAEAIFGQSFNETLVHQLVVRHLAGARAGTKAQKTRSDVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  +     +R GG AF   P      L KK+  + +R  LS+    
Sbjct: 61  GAKPWRQKGTGRARSGTTRSPVWRTGGVAFAARPRNYEQKLNKKMFRVGVRSILSELLRQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V ++++    KTK L  R + +D +  ++I    +D N  LA+RNIP + ++    
Sbjct: 121 NRLVVSNDILPSSPKTKELNARIKNID-AKRILIVVENVDANLALASRNIPYVEVIEAIN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++   ++   K++ +  A++ +E+R 
Sbjct: 180 LSPVLLVSADKVIATPGALKQIEERL 205


>gi|148244330|ref|YP_001219024.1| 50S ribosomal protein L4 [Candidatus Vesicomyosocius okutanii HA]
 gi|166199923|sp|A5CXK5|RL4_VESOH RecName: Full=50S ribosomal protein L4
 gi|146326157|dbj|BAF61300.1| 50S ribosomal protein L4 [Candidatus Vesicomyosocius okutanii HA]
          Length = 204

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V N+       + V + IFA    Q ++ +V        R G    K RS V+  G
Sbjct: 1   MELKVLNISLNSLNTVEVDDTIFARDFNQALVHQVTTAYMSGSRQGSKAQKNRSAVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            + + QKGTGRAR  +     +R GG  F   P      + KK+   A+    S+   S 
Sbjct: 61  KRPWAQKGTGRARAGTTRGPIWRSGGVTFATQPRSYAQKVNKKMYKGAISIIFSELVRSE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V+     KE KTK ++   + L++ +AL++   +LD N  L++RN+ ++ +   Q I
Sbjct: 121 RLKVVKEFDIKEVKTKNMIALLKVLNVKDALLM-TDELDENLYLSSRNLYHVGVCDTQSI 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V+++ A++ +E   
Sbjct: 180 DPVSLIGYDNVVVTELALKKIEVML 204


>gi|126643094|ref|YP_001086078.1| 50S ribosomal protein L4 [Acinetobacter baumannii ATCC 17978]
 gi|169632351|ref|YP_001706087.1| 50S ribosomal protein L4 [Acinetobacter baumannii SDF]
 gi|169794595|ref|YP_001712388.1| 50S ribosomal protein L4 [Acinetobacter baumannii AYE]
 gi|184159597|ref|YP_001847936.1| 50S ribosomal protein L4 [Acinetobacter baumannii ACICU]
 gi|213158834|ref|YP_002320832.1| ribosomal protein L4/L1e [Acinetobacter baumannii AB0057]
 gi|215482184|ref|YP_002324366.1| 50S ribosomal protein L4 (BL4) [Acinetobacter baumannii AB307-0294]
 gi|239503233|ref|ZP_04662543.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB900]
 gi|260557028|ref|ZP_05829245.1| ribosomal protein L4/L1 [Acinetobacter baumannii ATCC 19606]
 gi|294839746|ref|ZP_06784429.1| 50S ribosomal protein L4 [Acinetobacter sp. 6013113]
 gi|294842654|ref|ZP_06787337.1| 50S ribosomal protein L4 [Acinetobacter sp. 6014059]
 gi|294860424|ref|ZP_06798193.1| 50S ribosomal protein L4 [Acinetobacter sp. 6013150]
 gi|301345011|ref|ZP_07225752.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB056]
 gi|301512058|ref|ZP_07237295.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB058]
 gi|301596105|ref|ZP_07241113.1| 50S ribosomal protein L4 [Acinetobacter baumannii AB059]
 gi|166234625|sp|A3M982|RL4_ACIBT RecName: Full=50S ribosomal protein L4
 gi|226730599|sp|B7GW03|RL4_ACIB3 RecName: Full=50S ribosomal protein L4
 gi|226730600|sp|B7IA38|RL4_ACIB5 RecName: Full=50S ribosomal protein L4
 gi|226730601|sp|B2HZM1|RL4_ACIBC RecName: Full=50S ribosomal protein L4
 gi|226730602|sp|B0VQR9|RL4_ACIBS RecName: Full=50S ribosomal protein L4
 gi|226730603|sp|B0V6W9|RL4_ACIBY RecName: Full=50S ribosomal protein L4
 gi|126388978|gb|ABO13476.1| 50S ribosomal protein L4 [Acinetobacter baumannii ATCC 17978]
 gi|169147522|emb|CAM85383.1| 50S ribosomal protein L4, regulates expression of S10 operon
           [Acinetobacter baumannii AYE]
 gi|169151143|emb|CAO99815.1| 50S ribosomal protein L4, regulates expression of S10 operon
           [Acinetobacter baumannii]
 gi|183211191|gb|ACC58589.1| 50S ribosomal protein L4 [Acinetobacter baumannii ACICU]
 gi|213057994|gb|ACJ42896.1| ribosomal protein L4/L1e [Acinetobacter baumannii AB0057]
 gi|213987315|gb|ACJ57614.1| 50S ribosomal protein L4 (BL4) [Acinetobacter baumannii AB307-0294]
 gi|260409634|gb|EEX02935.1| ribosomal protein L4/L1 [Acinetobacter baumannii ATCC 19606]
 gi|322509507|gb|ADX04961.1| 50S ribosomal protein L4 [Acinetobacter baumannii 1656-2]
 gi|323519527|gb|ADX93908.1| 50S ribosomal protein L4 [Acinetobacter baumannii TCDC-AB0715]
          Length = 200

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 1/196 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL       + +SE  F  +  + ++ +V+       R G    K R++V+  G K + Q
Sbjct: 2   NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + +++++
Sbjct: 62  KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                  KTK L+ +      +   +I    +D N  LAARN+P+++++    I+   ++
Sbjct: 122 EFAVAAPKTKELLAKLND-LNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 180

Query: 188 RCSKLVLSKSAIEALE 203
              K+V+S +A + +E
Sbjct: 181 AFDKVVMSVAAAKKIE 196


>gi|12084410|pdb|1DMG|A Chain A, Crystal Structure Of Ribosomal Protein L4
          Length = 225

 Score =  168 bits (425), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 19/224 (8%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
            ++ + N+ GE  G + +S+ +F + P   ++ R +  Q   +R G + +K R EV+  G
Sbjct: 1   AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QK TGRARH S     +R GG   GP P      L KK++ LALR ALS K+  N
Sbjct: 61  RKPWPQKHTGRARHGSIRSPIWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYREN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR----NFQLAARNIPNINLLP 177
            ++V+D+L  +  KTK L    + L LS+   +           N +L+ RN+P++ ++ 
Sbjct: 121 KLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVII 180

Query: 178 V---------------QGINVYDILRCSKLVLSKSAIEALEDRF 206
                            G+NV+D+L+   LVL++  +  +E+  
Sbjct: 181 ADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVSKIEEVL 224


>gi|37519655|ref|NP_923032.1| 50S ribosomal protein L4 [Gloeobacter violaceus PCC 7421]
 gi|46577179|sp|Q7NPG9|RL4_GLOVI RecName: Full=50S ribosomal protein L4
 gi|35210646|dbj|BAC88027.1| 50S ribosomal protein L4 [Gloeobacter violaceus PCC 7421]
          Length = 213

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 7/211 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M   S+++  G   G + +   + +      ++    + Q    R G + +  R EV   
Sbjct: 1   MATCSIKDWQGNATGEVDLDLPVASAATASHVVYLAFKRQMVNSRQGTASTLTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPKPRDFEIKMNRKERRLALRTALQSRV-- 118

Query: 121 NDIMVIDNLV--SKECKTKYLVTRFRALDLSN---ALIIDGCQLDRNFQLAARNIPNINL 175
            D++V+D         KT+ LV  F    +     ++++   +   N  L+ARN+PN+ +
Sbjct: 119 EDLIVVDEFEGQLAAPKTRELVQAFERWGVDMASQSILLILRERQTNTYLSARNLPNVKV 178

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +    +NV D+L    +V++  A+E +++ +
Sbjct: 179 ITAGNLNVRDLLATDWIVVTGPALELIKETY 209


>gi|312200019|ref|YP_004020080.1| ribosomal protein L4/L1e [Frankia sp. EuI1c]
 gi|311231355|gb|ADP84210.1| ribosomal protein L4/L1e [Frankia sp. EuI1c]
          Length = 234

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            ++V    G + G   +  +IF ++    ++ +V+  Q    R G   +K R EV   G 
Sbjct: 23  TVTVHAPAGGEGGTAELPGEIFDVQVNVPLIHQVVVAQQAAARQGTHDTKTRGEVRGGGK 82

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +N 
Sbjct: 83  KPYRQKGTGRARQGSLRAPQFAGGGTVHGPTPRNYDQRTPKKMKAAALRGALSDRARNNR 142

Query: 123 IMVIDNLVS-KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           + V+ + V  +   TK  ++    +  S  +++   + D     + RN+  ++LL    +
Sbjct: 143 VHVVSSFVDGETPSTKAALSALLEIASSRRVLVVVERTDELTWKSLRNVSTVHLLDPGQL 202

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           N YD++    +V ++ A+ +   R K
Sbjct: 203 NTYDVMISDDVVFTQGALASFIGRGK 228


>gi|225630300|ref|YP_002727091.1| ribosomal protein L4 [Wolbachia sp. wRi]
 gi|254803765|sp|C0R308|RL4_WOLWR RecName: Full=50S ribosomal protein L4
 gi|225592281|gb|ACN95300.1| ribosomal protein L4 [Wolbachia sp. wRi]
          Length = 204

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E ++ NL  ++ G   ++  IF+ K +  IL  ++RWQ  ++R G  K+KG S+V+ T 
Sbjct: 1   MECNLVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGGG  FGPV     ++L KKVR   L+ ALS K+ +N
Sbjct: 61  AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++DNL     KT  +    +    S+ LI+     D     AA+N+  ++L+   G+
Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYGDD--LLRAAKNLHYVDLIKPIGL 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV+DIL    ++L+K  ++ LE R 
Sbjct: 179 NVFDILNHECVMLTKDTLKHLEGRL 203


>gi|257456893|ref|ZP_05622074.1| ribosomal protein, L4/L1 family [Treponema vincentii ATCC 35580]
 gi|257445602|gb|EEV20664.1| ribosomal protein, L4/L1 family [Treponema vincentii ATCC 35580]
          Length = 211

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 105/201 (52%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V ++DG++   I +++ +F L   + ++   +  +    R+G + +KGR+EV  + 
Sbjct: 1   MEKKVYSIDGKELRTIELNDAVFGLPVNEDVIYYAITNELANMRVGTASTKGRAEVNGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QKGTGRAR   K      GGG  FGP P    +A+PKK + LA++  LS K   +
Sbjct: 61  AKPYKQKGTGRARRGDKKSPLLLGGGTIFGPKPRDYSYAIPKKAKRLAMKSILSLKAQDD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VI++   +  KTK L    +A       ++     D   + A +NIP ++ L    +
Sbjct: 121 RLVVIEDFTVETGKTKDLAKILQAFVQDERTVLVLKDDDAMLKRAGKNIPTLSFLTYNRL 180

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
             +D+    K+++ +SA + L
Sbjct: 181 RAHDLFYGRKVLMLESAAKNL 201


>gi|91774636|ref|YP_544392.1| 50S ribosomal protein L4P [Methylobacillus flagellatus KT]
 gi|122400330|sp|Q1H4N6|RL4_METFK RecName: Full=50S ribosomal protein L4
 gi|91708623|gb|ABE48551.1| LSU ribosomal protein L4P [Methylobacillus flagellatus KT]
          Length = 208

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 105/208 (50%), Gaps = 4/208 (1%)

Query: 2   IELSVRNLDG--EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           +E+ + + +G     G ++VSE  F  +  + ++ +V+       R        R+EV++
Sbjct: 1   MEIKLIDKNGRPAKAG-LAVSEATFGREFNEALVHQVVVAYQANARTATRAQLTRAEVSH 59

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKF 118
           T  K + QKGTGRAR    S + +RGGG+AF   P     H + +K     +R  LS+  
Sbjct: 60  TTKKPWNQKGTGRARAGMSSSTIWRGGGRAFPNTPDENFSHKINRKAYRAGVRSILSELV 119

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             + +  ++       KTK LV + + L  +  L++   + D N  L+ARN+P++ +L  
Sbjct: 120 RQDRLSAVEEFAVDTPKTKQLVEKIKGLGYNEGLLVLVDKFDENLYLSARNLPHVLVLEA 179

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           Q ++   ++R  +++ +  A++ LE+  
Sbjct: 180 QYVDPVSLVRFPQVLATAGAVKKLEEML 207


>gi|226953872|ref|ZP_03824336.1| 50S ribosomal protein L4 [Acinetobacter sp. ATCC 27244]
 gi|294651633|ref|ZP_06728937.1| 50S ribosomal protein L4 [Acinetobacter haemolyticus ATCC 19194]
 gi|226835355|gb|EEH67738.1| 50S ribosomal protein L4 [Acinetobacter sp. ATCC 27244]
 gi|292822482|gb|EFF81381.1| 50S ribosomal protein L4 [Acinetobacter haemolyticus ATCC 19194]
          Length = 200

 Score =  167 bits (424), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 4/199 (2%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           +++ + G     + +SE  F  +  + ++ +V+       R G    K R++V+  G K 
Sbjct: 2   NLKTVSGSA---VELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKP 58

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + ++
Sbjct: 59  FRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLV 118

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           +++       KTK L+ +      +   +I    +D N  LAARN+P+++++    I+  
Sbjct: 119 LVEEFAVAAPKTKELLAKL-TDLNATRALIITDAVDENLYLAARNLPHVDVVDATAIDPV 177

Query: 185 DILRCSKLVLSKSAIEALE 203
            ++   K+V+S +A + +E
Sbjct: 178 SLIAFDKVVMSVAAAKKIE 196


>gi|148284213|ref|YP_001248303.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong]
 gi|189183952|ref|YP_001937737.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda]
 gi|166234696|sp|A5CCL1|RL4_ORITB RecName: Full=50S ribosomal protein L4
 gi|226730701|sp|B3CT06|RL4_ORITI RecName: Full=50S ribosomal protein L4
 gi|146739652|emb|CAM79441.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong]
 gi|189180723|dbj|BAG40503.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda]
          Length = 210

 Score =  167 bits (424), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 116/208 (55%), Gaps = 3/208 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V NL  E +  + ++  +F LK +  I+  V+ WQ  ++  G   +K  S V+ T 
Sbjct: 1   MKVKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTG AR  S    Q RGGG + GPV       +PKK+R  AL++ALS K   N
Sbjct: 61  KKPFKQKGTGNARQGSLRSVQMRGGGISHGPVVRSHEFDVPKKIRKQALKYALSYKLSVN 120

Query: 122 DIMVIDNLVSKECKT---KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            ++V+D+      KT   K L+ ++   + S    ID   +DRNF LA+RN+ N+N++  
Sbjct: 121 KLIVVDDFNIGSNKTAVLKNLLKKYNYSNYSGFFCIDDQNVDRNFFLASRNLFNLNVVAQ 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            G N YDI++   ++++ SA ++LE R 
Sbjct: 181 IGANPYDIMKHDCVMVTLSAAKSLEMRL 208


>gi|91786168|ref|YP_547120.1| 50S ribosomal protein L4 [Polaromonas sp. JS666]
 gi|123356254|sp|Q12GX0|RL4_POLSJ RecName: Full=50S ribosomal protein L4
 gi|91695393|gb|ABE42222.1| LSU ribosomal protein L4P [Polaromonas sp. JS666]
          Length = 206

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 104/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ + N  G     + V + +F  +  + ++ +V+       R G    K R +V ++ 
Sbjct: 1   MQVELLNDQGLASSKVDVPDTVFGREYNESLIHQVVVAFQANARQGTRAQKDREQVRHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F  +P       + KK+    +    S     
Sbjct: 61  KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTQKINKKMYRAGMASIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L     KTK L  +F+A++  N++++    +D N  LA+RN+ NI ++  + 
Sbjct: 121 GRLAVVDSLAVDSPKTKVLADKFKAMN-LNSVLVIADVVDENLYLASRNLVNILVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A++ L++ F
Sbjct: 180 ADPVSLVHYKKVLVTKAAMDQLKEMF 205


>gi|194477057|ref|YP_002049236.1| 50S ribosomal protein L4 [Paulinella chromatophora]
 gi|171192064|gb|ACB43026.1| 50S ribosomal protein L4 [Paulinella chromatophora]
          Length = 211

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 2/203 (0%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           V +  G++ G  +V+  +  L     ++ R +  Q   +R G + +  RSEV   G K Y
Sbjct: 6   VHDWQGQEAGKATVNLKVAKLSSAIDLMHRAVLRQLAHQRQGTASTLTRSEVKGGGRKPY 65

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRAR  S       GGG  FGP P      + KK R LALR AL  +   + ++ 
Sbjct: 66  KQKGTGRARQGSTRTPLRPGGGVVFGPSPRTYSLGMNKKERRLALRTALMSRAEDSIVIK 125

Query: 126 IDNLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183
                  + KTK +        +     ++I           + RN+P + L+    +NV
Sbjct: 126 GFGTGIDKPKTKTITDALERFGIGKETKVLIILDSPSSAITYSIRNLPKVKLIKADQLNV 185

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
           +D+L  SK++LS+ A+  +E+ +
Sbjct: 186 FDLLHASKVLLSEEALARIEEVY 208


>gi|42526280|ref|NP_971378.1| 50S ribosomal protein L4 [Treponema denticola ATCC 35405]
 gi|46577160|sp|P61070|RL4_TREDE RecName: Full=50S ribosomal protein L4
 gi|41816392|gb|AAS11259.1| ribosomal protein L4 [Treponema denticola ATCC 35405]
 gi|325473224|gb|EGC76419.1| 50S ribosomal protein L4 [Treponema denticola F0402]
          Length = 211

 Score =  167 bits (423), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 108/205 (52%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V ++DG++   I++ + +F L     ++   +  +   KR+G + +KGR+EV  + 
Sbjct: 1   MEKKVYSVDGKELRTINLDDKVFGLPVNDDVIYYAINNELANKRVGTACTKGRAEVHGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SK Y QKGTGRAR   K      GGG  FGP P    +++PKK + LA++  LS K  ++
Sbjct: 61  SKPYSQKGTGRARRGDKKSPLLVGGGTIFGPKPRDFSYSMPKKAKRLAMKSILSLKAQND 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+++   +  KT+ LV            +I     D   + A RNIP+++ L    +
Sbjct: 121 RLVVVEDFTVESGKTRDLVKILDNFAKGERAVIILKDDDSLVKRAGRNIPHLSFLAYNRL 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
             +D+    K+++ +SA + L + +
Sbjct: 181 RAHDLFYGRKVIMLESAAKNLSEFY 205


>gi|116072563|ref|ZP_01469829.1| 50S ribosomal protein L4 [Synechococcus sp. BL107]
 gi|116064450|gb|EAU70210.1| 50S ribosomal protein L4 [Synechococcus sp. BL107]
          Length = 211

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  ++   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MASCVVRDWQGKEAGKATLDLKVAKEATAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R  ALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KT+ +        +     ++I         + + RN+  + L+  
Sbjct: 121 ITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLEKVKLISA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LV+ + A+  +++ +
Sbjct: 181 NHLNVFDLLHANSLVVGEDALTTIQEVY 208


>gi|225011648|ref|ZP_03702086.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-2A]
 gi|225004151|gb|EEG42123.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-2A]
          Length = 209

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL+V N++G++ G  I + + +F ++P    +   ++     KR G  K+K R+E+  +
Sbjct: 1   MELNVLNIEGKETGRKIKLDKAVFGIEPNDHAIYLDVKQHLANKRQGTHKAKERAEIVGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      + KKV+ LA   ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKNPLFKGGGRVFGPRPRDYSQKVNKKVKRLARMSALSIKANQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++    + +TK  +    AL       I+   +L++N  L++RN+ N  ++   
Sbjct: 121 KSIVVLEDFQMDQPQTKNYLKMLAALGLADKKSILVLGELNKNVYLSSRNLKNSKVVINS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y I   + L+ S+ AI  LE   
Sbjct: 181 ELNTYSISNANSLIFSEGAIAGLESLL 207


>gi|323144965|ref|ZP_08079525.1| 50S ribosomal protein L4 [Succinatimonas hippei YIT 12066]
 gi|322415244|gb|EFY06018.1| 50S ribosomal protein L4 [Succinatimonas hippei YIT 12066]
          Length = 203

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 7/208 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +    G DKG + VSE  F  +  + ++ +V+       R G    K RSEV+  G
Sbjct: 1   MELKMI---GADKG-LEVSESTFGREFNEALVHQVVVAYQSTARAGTKAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + +K+  +A+R  LS     +
Sbjct: 57  KKPFRQKGTGRARAGSSRSPLWRAGGTIFAAKPQDWTQKVNRKMYRVAMRSILSQLVRED 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ-- 179
            ++V+ +   +  KTK LV + + LDL N LI++G + D +  LA+RN+  + +      
Sbjct: 117 RLLVVGDFKLENHKTKTLVAKLKELDLKNVLIVNG-EFDSDLFLASRNLYKVEVCQPGTA 175

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
             N  +++   K+V++++A++ +E+  K
Sbjct: 176 EFNPINLINFDKVVMTEAAVKKVEEMLK 203


>gi|262370577|ref|ZP_06063902.1| 50S ribosomal protein L4 [Acinetobacter johnsonii SH046]
 gi|262314377|gb|EEY95419.1| 50S ribosomal protein L4 [Acinetobacter johnsonii SH046]
          Length = 200

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 1/196 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL+      + +SE  F  +  + ++ +V+       R G    K R++V+  G K + Q
Sbjct: 2   NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGKKPFRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + +++++
Sbjct: 62  KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                  KTK L+ +      +   +I    +D N  LAARNIP+++++    I+   ++
Sbjct: 122 EFAVAAPKTKELLAKLND-LNATRALIVTESVDENLYLAARNIPHVDVVDAAAIDPVSLI 180

Query: 188 RCSKLVLSKSAIEALE 203
              K+V+S +A + +E
Sbjct: 181 AFDKVVMSVAAAKKIE 196


>gi|87124963|ref|ZP_01080810.1| 50S ribosomal protein L4 [Synechococcus sp. RS9917]
 gi|86167283|gb|EAQ68543.1| 50S ribosomal protein L4 [Synechococcus sp. RS9917]
          Length = 211

 Score =  167 bits (423), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G+D G  S+   +        ++ R +  Q    R G + +  R+EV   
Sbjct: 1   MATCVVRDWQGKDAGKASLDLKVAKESTATDLMHRAVLRQQAHMRQGTASTLTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +F +
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRSYNLAMNRKERRLALRTALMARFEA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KT+ +        +   + ++I         + + RN+  + L+  
Sbjct: 121 ITVVKDFGASLDVPKTREISDALGRLGIAADSKVLIILSNPSEVVRRSVRNLDKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L    LV+ + A+  +++ +
Sbjct: 181 DQLNVFDLLNAQALVVGEDALATIQEVY 208


>gi|121603121|ref|YP_980450.1| 50S ribosomal protein L4 [Polaromonas naphthalenivorans CJ2]
 gi|166199840|sp|A1VIQ1|RL4_POLNA RecName: Full=50S ribosomal protein L4
 gi|120592090|gb|ABM35529.1| LSU ribosomal protein L4P [Polaromonas naphthalenivorans CJ2]
          Length = 206

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ + N  G     + VS+ +F  +  + ++ +V+       R G    K R +V ++ 
Sbjct: 1   MQVELLNDQGLSSSKVDVSDTVFGREYNESLIHQVIVAFQANARQGTRAQKDREQVRHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F  +P     H + KK+    +    S     
Sbjct: 61  KKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFTHKINKKMYRAGMASIFSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L     KTK L  +F+A++  N++++   Q+D N  LA+RN+ NI ++  + 
Sbjct: 121 GRLAVVDSLTVDSPKTKVLADKFKAMN-LNSVLVIADQVDENLYLASRNLVNILVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K+A++ L++ F
Sbjct: 180 ADPLSLVHYKKVLVTKAAMDQLKEMF 205


>gi|269468076|gb|EEZ79790.1| ribosomal protein L4 [uncultured SUP05 cluster bacterium]
          Length = 204

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V N+         VS+ IFA    + ++ +V        R G    K RS V+  G
Sbjct: 1   MKLKVLNVSTNKSSSTEVSDSIFARDYNESLVHQVTTAYMAGGRQGSKAQKNRSAVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + KK+   A+    S+   S 
Sbjct: 61  KKPWNQKGTGRARAGTSRGPIWRSGGVTFAAQPRSYAQKVNKKMYKGAISIIFSELVRSE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V+ +   K+ KTK + T  +AL+L +AL++   +LD N  L++RN+ ++ +   Q I
Sbjct: 121 RLKVVKDFEVKDAKTKNITTLLKALNLKDALLM-TDELDENLYLSSRNLYHVGVCDTQSI 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++++A++ +E   
Sbjct: 180 DPVSLIGYENVVMTEAALKKMEGML 204


>gi|189501653|ref|YP_001957370.1| 50S ribosomal protein L4 [Candidatus Amoebophilus asiaticus 5a2]
 gi|226730610|sp|B3EUM2|RL4_AMOA5 RecName: Full=50S ribosomal protein L4
 gi|189497094|gb|ACE05641.1| hypothetical protein Aasi_0196 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 210

 Score =  167 bits (423), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELSV    G+D G  + +S+ IF + P    +   ++     KR G  KSK R E+A +
Sbjct: 1   MELSVLQYTGKDTGRKVVLSDTIFGITPNDHAIYLDVKNILANKRQGTHKSKERGEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L KK++ LA + AL+ K   
Sbjct: 61  TKKIKKQKGTGTARAGSIKSPIFRGGGRVFGPKPRDYGFKLNKKLKKLARKSALTYKAQQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +I V+++   +  KTK  +   + L++     ++    +D+N  LA+RN+PN ++  V+
Sbjct: 121 GNISVLEDFSFEMPKTKMYLEMLQNLNMADQKTLLILPAVDKNLVLASRNLPNTSVALVE 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN YD+L   K+++S++A+  L + F
Sbjct: 181 QINTYDLLYSKKILISETALSKLTENF 207


>gi|320538164|ref|ZP_08038059.1| ribosomal protein L4/L1 family protein [Treponema phagedenis F0421]
 gi|320144981|gb|EFW36702.1| ribosomal protein L4/L1 family protein [Treponema phagedenis F0421]
          Length = 211

 Score =  167 bits (422), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 104/205 (50%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V ++DG++   I++ + +F L   + ++   +  +    R+G + +KGR+EV  + 
Sbjct: 1   MEKKVYSVDGKELRTINLDDAVFGLPVNEDVIYYAVNNELANNRVGTACTKGRAEVNGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QKGTGRAR   K      GGG  FGP P    + +PKK + LA++  LS K   +
Sbjct: 61  AKPYRQKGTGRARRGDKKSPILVGGGTIFGPKPRDYSYVMPKKAKRLAMKSLLSMKAQDD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V+++   +  KTK L             ++     D   + A +NIP ++ L    +
Sbjct: 121 RLTVVEDFTIESGKTKDLAKILSNFAERGRTVLILHDDDPMLKRAGKNIPRLSFLSYNRL 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
             +D+    K+++ +SA++ L D +
Sbjct: 181 RAHDLFYGRKVLILESAVKKLSDFY 205


>gi|226226280|ref|YP_002760386.1| 50S ribosomal protein L4 [Gemmatimonas aurantiaca T-27]
 gi|226089471|dbj|BAH37916.1| 50S ribosomal protein L4 [Gemmatimonas aurantiaca T-27]
          Length = 213

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 95/198 (47%), Gaps = 1/198 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           E  + +  G+  G   + E  F       ++ + ++     +R G +K+K R EV     
Sbjct: 9   EAPLYSAQGKQGGTRQLPEGTFDGIVNVPVMHQAVKAFLANRRQGTAKTKTRGEVTGGNQ 68

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     + GGG  FGP P      +PK+VR LA + AL+ +   N 
Sbjct: 69  KPWKQKGTGRARQGSTRAPNWPGGGTVFGPQPRSYTQIVPKQVRVLARKSALNARARENA 128

Query: 123 IMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++V++ L     KTK +   F +   L   +++    +  N  L+ARN+   +++P    
Sbjct: 129 VVVVEALNFSAPKTKAMTELFTKLGVLGKKVLVLTDGVKPNVYLSARNLGQAHVMPYSDA 188

Query: 182 NVYDILRCSKLVLSKSAI 199
           N Y IL    +V+  SA+
Sbjct: 189 NTYHILWSDVVVIESSAL 206


>gi|325954993|ref|YP_004238653.1| ribosomal protein L4/L1e [Weeksella virosa DSM 16922]
 gi|323437611|gb|ADX68075.1| ribosomal protein L4/L1e [Weeksella virosa DSM 16922]
          Length = 209

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/208 (28%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E++V N++G++ G  +S+ E +F ++P    +   ++     +R G  K+K R+EVA +
Sbjct: 1   MEVAVLNIEGKETGRKVSLDEAVFGVEPSTHTVWLEVKQYLAAQRQGTHKAKERNEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K  + LA +  LS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPRNYSFKLNKAQKRLAKKSVLSQKLAD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+I VI++   +  +TK  +   + L       +    + ++N  L++RN+    ++   
Sbjct: 121 NEIKVIEDFSFEAPRTKEFINVLKGLGLEGKRSLFVLGEPNKNVYLSSRNLQKTKVVNNS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            +N+YD++  S++V  + ++  ++D  +
Sbjct: 181 ELNIYDMINASQIVFFEGSLATIQDNLR 208


>gi|94500992|ref|ZP_01307517.1| Ribosomal protein L4 [Oceanobacter sp. RED65]
 gi|94426932|gb|EAT11915.1| Ribosomal protein L4 [Oceanobacter sp. RED65]
          Length = 200

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 105/205 (51%), Gaps = 6/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++++V     +    ++VS+  FA    + ++ +++       R G    K RS+V+  G
Sbjct: 1   MDINV-----QGGSTVTVSDVAFARDYNESLVHQLVTAYLAGARQGSKAQKNRSDVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      L KK+   A++   S+    +
Sbjct: 56  AKPWRQKGTGRARAGTSRSPIWRTGGVTFAARPRNYEQKLNKKMYRAAMQAIWSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+   +  KTK   ++   +DLSN  ++   ++ +N  LA+RN+P++ +    G+
Sbjct: 116 RLVVVDSFDVESHKTKAFASKLSDMDLSNV-LVVDSEVSQNVYLASRNLPHVAVAEATGV 174

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K++++  A++ +E+  
Sbjct: 175 DPVSLVSFEKVLVTVPALKKVEEML 199


>gi|293602634|ref|ZP_06685077.1| 50S ribosomal protein L4 [Achromobacter piechaudii ATCC 43553]
 gi|292819006|gb|EFF78044.1| 50S ribosomal protein L4 [Achromobacter piechaudii ATCC 43553]
          Length = 206

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 94/206 (45%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+     S  + IF     + ++ +++       R G    K R+EV ++ 
Sbjct: 1   MDLKLLNDQGQAAATFSAPDTIFGRDFNEALIHQIVVAFQANARAGNRAQKDRAEVKHST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R  LS     
Sbjct: 61  KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+++   +  K              ++++I    +D N  LA RN+P++ ++  + 
Sbjct: 121 DRIAVVESFDLESPK-TKAAAAKLKSLGLDSVLIITDSVDENVYLATRNLPHVAVVEPRY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI  LE+  
Sbjct: 180 ADPLSLVHYKKVLITKPAIAQLEEML 205


>gi|78185523|ref|YP_377957.1| 50S ribosomal protein L4 [Synechococcus sp. CC9902]
 gi|109893648|sp|Q3AUW2|RL4_SYNS9 RecName: Full=50S ribosomal protein L4
 gi|78169817|gb|ABB26914.1| LSU ribosomal protein L4P [Synechococcus sp. CC9902]
          Length = 211

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    VR+  G++ G  ++   +        ++ R +  Q    R G + +  RSEV   
Sbjct: 1   MASCVVRDWQGKEAGKATLDLKVAKEASAVDLMHRAVLRQQAHMRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R  ALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSVRTPLRPGGGIIFGPKPRSYNLAMNRKERRSALRTALMARIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KT+ +        +     ++I         + + RN+  + L+  
Sbjct: 121 ITVVKDFGTSLEAPKTREITEALGRLGIAADTKVLIVLTNPSEMVRRSVRNLDKVKLISA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LV+ + A+  +++ +
Sbjct: 181 NHLNVFDLLHANSLVVGEDALTTIQEVY 208


>gi|33241160|ref|NP_876102.1| 50S ribosomal protein L4 [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
 gi|46577200|sp|Q7V9W3|RL4_PROMA RecName: Full=50S ribosomal protein L4
 gi|33238690|gb|AAQ00755.1| Ribosomal protein L4 [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 211

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M   +V +  G++ G  S++  +        ++ R +  Q    R G + +  R+EV   
Sbjct: 1   MANCAVLDWQGKEAGKASLNLKVAKDSSAVDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     ++ +K R LALR AL  +F  
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRQYNLSMNRKERRLALRTALMARFND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
              +       K  KTK +        +  ++ ++I   Q     + + RN+  + L+  
Sbjct: 121 VIAVKDFGSKLKVPKTKEIQDFLARLDISSNSKVLIILSQPSDIIRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           + +NV+D+L  + L++ + A+  +++ +
Sbjct: 181 EHLNVFDLLNANSLIIGEDALGKIKEVY 208


>gi|281206127|gb|EFA80316.1| hypothetical protein PPL_07147 [Polysphondylium pallidum PN500]
          Length = 318

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 113/204 (55%), Gaps = 3/204 (1%)

Query: 4   LSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           + V N   ++  G I + + IF++  +  IL R++RWQ  +   G   ++   ++  T  
Sbjct: 111 VPVVNFKSKENVGEIQLLKSIFSVPLRVDILHRIVRWQRAKAMQGTHYAQNMGDIDRTNK 170

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  +    Q +GG +AF P P     +LPKKVR L L+ AL+ K   N 
Sbjct: 171 KPFSQKGTGRARQGTNHAIQMKGGARAFPPKPRDHSFSLPKKVRRLGLKVALATKLAQNK 230

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +++++NL  +  KTK L T     +     ++   ++  N  LA  NI  I+LLP +G+N
Sbjct: 231 LVIVENLELESHKTKDLDTLL--PEQWGRSLLVDKEISSNLSLAGFNIKRIDLLPERGLN 288

Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206
           VY IL+   LVL++++++ ++ R 
Sbjct: 289 VYSILQKDTLVLTRASLDEIQKRL 312


>gi|238898926|ref|YP_002924608.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|259491562|sp|C4K7B7|RL4_HAMD5 RecName: Full=50S ribosomal protein L4
 gi|229466686|gb|ACQ68460.1| 50S ribosomal subunit protein L4, regulates expression of S10
           operon [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 201

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++ +      ++VSE  F     + ++ +V+   +   R G    K R+EV  + 
Sbjct: 1   MELVMKDAECA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKSRAEVKASR 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    N
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGITFAAKPQDHSQKVNKKMYQGALKSILSELVRQN 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    ++ KTK L+ + + + L +  +I   ++D N  LAARN+  +++    GI
Sbjct: 117 RLIVVETFSVEKPKTKLLIQKLKEMSLRDV-LIVTEEVDENLFLAARNLYKVDVRDAAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++ +A++ LE+  
Sbjct: 176 DPVSLISFDKVVMTGNAVKQLEEML 200


>gi|255319814|ref|ZP_05361019.1| ribosomal protein, L4/L1 family [Acinetobacter radioresistens SK82]
 gi|262380347|ref|ZP_06073501.1| ribosomal protein L4/L1 [Acinetobacter radioresistens SH164]
 gi|255303133|gb|EET82345.1| ribosomal protein, L4/L1 family [Acinetobacter radioresistens SK82]
 gi|262297793|gb|EEY85708.1| ribosomal protein L4/L1 [Acinetobacter radioresistens SH164]
          Length = 200

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/196 (26%), Positives = 97/196 (49%), Gaps = 1/196 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           NL+      + +SE  F  +  + ++ +V+       R G    K R++V+  G K + Q
Sbjct: 2   NLNTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGSKAQKSRADVSGGGKKPFRQ 61

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S     + GGGK F   P      + +K+   A++  L++    + +++++
Sbjct: 62  KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 121

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
            L     KTK L+ +      +   +I    +D N  LAARN+P+++++    I+   ++
Sbjct: 122 ELQVSAPKTKELLAKLND-LNAPRALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 180

Query: 188 RCSKLVLSKSAIEALE 203
              K+V+S +A + +E
Sbjct: 181 AFDKVVMSVAAAKKIE 196


>gi|163786189|ref|ZP_02180637.1| 50S ribosomal protein L4 [Flavobacteriales bacterium ALC-1]
 gi|159878049|gb|EDP72105.1| 50S ribosomal protein L4 [Flavobacteriales bacterium ALC-1]
          Length = 209

 Score =  166 bits (421), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V +++G+D G    +S+D++A++P    +   ++     +R G  K+K R+E+  +
Sbjct: 1   MKVAVLDINGKDTGRKAELSKDVYAIEPNNHAVYLDVKQYLANQRQGTHKAKERAEITGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F+GGG+ FGP P      L K V+ LA + ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSGVFKGGGRMFGPRPRNYGFKLNKNVKRLARKSALSIKAND 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             IMV+++   +  KTK  +   +A    +   +I     + N  L++RN     ++   
Sbjct: 121 KSIMVMEDFNFEAPKTKNFINVLKALEVENKKSLIVLGGSNNNVYLSSRNFKGSEVVTAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ Y I+  +K++L + A+E +E   
Sbjct: 181 ELSTYKIMNANKVILLEGALEGIESNL 207


>gi|58584598|ref|YP_198171.1| 50S ribosomal protein L4 [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75497927|sp|Q5GSU5|RL4_WOLTR RecName: Full=50S ribosomal protein L4
 gi|58418914|gb|AAW70929.1| Ribosomal protein L4 [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 204

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 115/205 (56%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  + NL   D G   ++  IF+++ +  IL  ++RWQ  ++R G  K KG S+V+ T 
Sbjct: 1   MECKLVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGGG  FGP+     ++L KKVR   L+ ALS K+ +N
Sbjct: 61  AKPYSQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++++NL     KT  +    +    S+ LI+   +   +   AARN+  +NL+   G+
Sbjct: 121 QVIILNNLNINVKKTSEMCKYIQNFKFSSFLIVGDYE--DSLLRAARNLHYVNLIKPIGL 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV+DIL    ++L+  A+  LE R 
Sbjct: 179 NVFDILNHECIMLTSDALRYLEGRL 203


>gi|189485086|ref|YP_001956027.1| 50S ribosomal protein L4 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287045|dbj|BAG13566.1| 50S ribosomal protein L4 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 206

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 111/204 (54%), Gaps = 1/204 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V +  GE+KG I + +  F  K    +L  V        R G  K+K R EV+++G
Sbjct: 1   METTVYDAKGEEKGKIELPD-FFGKKVSVALLHEVTMAYLNNLRAGTHKTKTRGEVSFSG 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTG AR   K+   +R GG  FGP P      + K+ + L+L  A S +  + 
Sbjct: 60  AKPWKQKGTGNARAGQKNSPLWRKGGIIFGPQPRNYYTKISKRKKKLSLDMAFSAQLKNG 119

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +I+V+D++   E KTK +    + L +    I+     D +F++AARNI N+ +  ++ I
Sbjct: 120 NIIVVDSVKVSEVKTKKVAELIKNLKVGGKKIVFAIPSDTDFKVAARNIKNVIVENIKNI 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N Y +L   KLV++  A++ +++R
Sbjct: 180 NAYQVLWADKLVITPEAVDLIKER 203


>gi|58617355|ref|YP_196554.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel]
 gi|75432695|sp|Q5FFU1|RL4_EHRRG RecName: Full=50S ribosomal protein L4
 gi|58416967|emb|CAI28080.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel]
          Length = 205

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 118/205 (57%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++V N++ ++ G I ++  IF++  +  IL  V+ WQ  ++R+G  K+K   +V+ T 
Sbjct: 1   MEVNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGG   FGPV     ++L KKVR+L L+ ALS K   N
Sbjct: 61  AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++D++     KT  ++   +  +   + +I G   ++    + +N+ N+ LL   G 
Sbjct: 121 KLLILDSIDVNFVKTAQVLRFIKNFE-HQSFLIIGKDYNKGMMYSCKNLHNVTLLKQIGT 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV+DILR   ++L+   ++ LEDR 
Sbjct: 180 NVFDILRHDCVILTVDTVKYLEDRL 204


>gi|116786479|gb|ABK24122.1| unknown [Picea sitchensis]
          Length = 312

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           + L V   DGE  G  S+          + ++ R +  +   +R G + +  R+EV   G
Sbjct: 55  VTLPVLTFDGERAGEASLDLKCARPDTARAVVHRGVITELQNRRRGTASTLTRAEVRGGG 114

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S+      GGG  FGP P      + KK + LA+  AL     S 
Sbjct: 115 RKPYRQKGTGRARRGSQRTPLRPGGGVIFGPKPKDWSIKMNKKEKRLAISTALMSATVST 174

Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            ++   N   +  KTK  +   +    + S   +I   ++  N +L++RNI  + +L  +
Sbjct: 175 VVVEDFNDKFERPKTKEFIEALKRWGVEPSEHTLIFSTEVSENVRLSSRNIGTLKVLTPR 234

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N+YD+LR  KLV ++ ++E L   +
Sbjct: 235 NLNLYDVLRADKLVFTEGSVEYLNRMY 261


>gi|42520529|ref|NP_966444.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|46577161|sp|P61071|RL4_WOLPM RecName: Full=50S ribosomal protein L4
 gi|42410268|gb|AAS14378.1| ribosomal protein L4 [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 204

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E ++ NL  ++ G   ++  IF+ K +  IL  ++RWQ  ++R G  K+KG S+V+ T 
Sbjct: 1   MECNLVNLSNDNVGAAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGGG  FGPV     ++L KKVR   L+ ALS K+ +N
Sbjct: 61  AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++DNL     KT  +    +    S+ LI+     D     AA+N+  ++L+   G+
Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYGDD--LLRAAKNLHYVDLIKPIGL 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV+DIL    ++L+K  ++ LE R 
Sbjct: 179 NVFDILNHECVMLTKDTLKHLEGRL 203


>gi|218186003|gb|EEC68430.1| hypothetical protein OsI_36619 [Oryza sativa Indica Group]
          Length = 273

 Score =  166 bits (420), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 111/201 (55%), Gaps = 11/201 (5%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           V N   EDKG + +  D+F +  ++ I+ RV          G   +K  SEV+ TG K Y
Sbjct: 76  VTNFHNEDKGFMVLDGDVFDVPIRKDIVHRV----------GTHSTKTISEVSGTGRKPY 125

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     ++V
Sbjct: 126 NQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLV 185

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
            D+L     KTK +V     ++ +  + ++DG  +D+  +LA +N+  +N+LP  G+NVY
Sbjct: 186 FDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLNVY 245

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            IL+   LV++++AI  + +R
Sbjct: 246 SILQHDTLVMTRNAINRIVER 266


>gi|328949276|ref|YP_004366613.1| ribosomal protein L4/L1e [Treponema succinifaciens DSM 2489]
 gi|328449600|gb|AEB15316.1| ribosomal protein L4/L1e [Treponema succinifaciens DSM 2489]
          Length = 212

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 105/205 (51%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V ++DG++   I++ + IF L   + ++   +  +   KR+G + +K R+EV  + 
Sbjct: 1   MEKKVYSIDGKELRTINLDDKIFGLPVNEDVIYYAITNELANKRVGTACTKTRAEVHGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QKGTG AR   K      GGG  FGP P    +A+PKK + LA++  LS +  ++
Sbjct: 61  AKPYKQKGTGNARRGDKKSPITVGGGTIFGPKPRDYSYAIPKKEKRLAMKSILSLQAQAD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V+++   +  KTK LV   +        +I     D   + A RN+PN+  L    +
Sbjct: 121 RLTVVEDFTIESGKTKDLVKILKNFVKDERTVILLKDDDAKIKQAGRNLPNVYFLSYNRL 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
             +D+    K+++ + A + L D +
Sbjct: 181 RAHDLFYGRKIIMLEGAAKNLSDFY 205


>gi|190571547|ref|YP_001975905.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018949|ref|ZP_03334756.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|226731443|sp|B3CN27|RL4_WOLPP RecName: Full=50S ribosomal protein L4
 gi|190357819|emb|CAQ55275.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995058|gb|EEB55699.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 204

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  + +L   + G + ++  IF+ K +  IL  ++RWQ  ++R+G  K+KG S+V+ T 
Sbjct: 1   MECELVDLSNNNVGSVELNPLIFSAKQKLSILHDIVRWQLAKRRVGAHKTKGISDVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGGG  FGPV     ++L KKVR   L+ ALS K+ +N
Sbjct: 61  AKPYGQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHAYSLNKKVRKFGLKIALSLKYLNN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+D+L     KT  +    +    S+ LI+     D     AA+N+  ++L+   G+
Sbjct: 121 QVVVLDSLNVDVKKTSKMCEYIKNFKFSSFLIVGDYGDD--LLRAAKNLHYVDLIKPIGL 178

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV+DIL    ++L+K  ++ LE R 
Sbjct: 179 NVFDILNHECVMLTKDTLKHLEGRL 203


>gi|57239335|ref|YP_180471.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
 gi|58579301|ref|YP_197513.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
 gi|81557285|sp|Q5HAS3|RL4_EHRRW RecName: Full=50S ribosomal protein L4
 gi|57161414|emb|CAH58338.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
 gi|58417927|emb|CAI27131.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
          Length = 205

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 118/205 (57%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++V N++ ++ G I ++  IF++  +  IL  V+ WQ  ++RIG  K+K   +V+ T 
Sbjct: 1   MEVNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK TGRAR  S    QFRGG   FGPV     ++L KKVR+L L+ ALS K   N
Sbjct: 61  AKPYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRTHAYSLNKKVRNLGLKVALSLKNSCN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++D++     KT  ++   +  +   + +I G   ++    + +N+ N+ LL   G 
Sbjct: 121 KLLILDSIDVNFVKTAQVLRFIKNFE-HQSFLIIGKDYNKGMMYSCKNLHNVTLLKQIGT 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV+DILR   ++L+   ++ LEDR 
Sbjct: 180 NVFDILRHDCVILTVDTVKYLEDRL 204


>gi|325280967|ref|YP_004253509.1| ribosomal protein L4/L1e [Odoribacter splanchnicus DSM 20712]
 gi|324312776|gb|ADY33329.1| ribosomal protein L4/L1e [Odoribacter splanchnicus DSM 20712]
          Length = 211

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 118/208 (56%), Gaps = 3/208 (1%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +ELSV N+ G++ G  I + + IF ++P +  +   ++      R G  KSK R+E++ +
Sbjct: 1   MELSVLNIAGQETGRKIVLDDAIFGIQPNEHAIYLDVKQFLANNRQGTHKSKQRNEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S    +FRGGG+ FGPVP      L KK++ LA + AL+ K  +
Sbjct: 61  TKKLKKQKGTGGARAGSIKNPEFRGGGRIFGPVPRDYSFKLNKKLKKLARKSALAVKASA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
           N + V+++   +  KTK +V       ++    L++ G  ++ N  L+ARN+ N+ ++ V
Sbjct: 121 NAVKVVEDFTFEAPKTKQMVALMNNLQVNNGRLLLVLGNGVNENVLLSARNLQNVEVMRV 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I  Y++++   LVL +S++E L + F
Sbjct: 181 SDIATYNVMKAKNLVLVESSVEGLNEMF 208


>gi|86605865|ref|YP_474628.1| 50S ribosomal protein L4 [Synechococcus sp. JA-3-3Ab]
 gi|109893645|sp|Q2JV82|RL4_SYNJA RecName: Full=50S ribosomal protein L4
 gi|86554407|gb|ABC99365.1| ribosomal protein L4 [Synechococcus sp. JA-3-3Ab]
          Length = 326

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V+N  GE  G   +S  +   +    IL   LR Q    R G + +K R+EV   
Sbjct: 1   MASCVVKNWQGETVGSAELSLKVARPETASHILYLALRRQMTNARQGNAHTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  FGP       A+ +K R LALR AL  +   
Sbjct: 61  GRKPWRQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQLALRTALQSRVED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KT+ +        +    + ++   +     + A RNI  + L+ +
Sbjct: 121 LIVVEDFQDQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGL 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L    ++++ SA+E L+ R+
Sbjct: 181 DQLNVFDLLNVDWVLITTSALEKLKARW 208


>gi|225621029|ref|YP_002722287.1| 50S ribosomal protein L4 [Brachyspira hyodysenteriae WA1]
 gi|296126866|ref|YP_003634118.1| ribosomal protein L4/L1e [Brachyspira murdochii DSM 12563]
 gi|254803718|sp|C0QVZ7|RL4_BRAHW RecName: Full=50S ribosomal protein L4
 gi|225215849|gb|ACN84583.1| 50S ribosomal protein L4 [Brachyspira hyodysenteriae WA1]
 gi|296018682|gb|ADG71919.1| ribosomal protein L4/L1e [Brachyspira murdochii DSM 12563]
          Length = 215

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 8/214 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ + N +G+  G + + ++IF  +    +L   ++ +   +R G   +K R+EV+  G
Sbjct: 1   MEVVILNENGDSVGNLEIVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     + GGGK   P P    + LPKK++  AL   LS K+ SN
Sbjct: 61  KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGSN 120

Query: 122 DIMVIDNLVSKECKTKYL---VTRFRALDLSNALIIDGCQLD-----RNFQLAARNIPNI 173
            + V ++      KTK +   +++ +  +      + G             L+ RNI ++
Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNTRKVAFVVGKDESLGDNYNKLLLSLRNIKDL 180

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
            L+    ++++ +    ++  +K+A+  L  R K
Sbjct: 181 KLVNADSMSIHPLFYADEVYFTKTALSKLNARIK 214


>gi|196006758|ref|XP_002113245.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens]
 gi|190583649|gb|EDV23719.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens]
          Length = 220

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/179 (39%), Positives = 104/179 (58%), Gaps = 1/179 (0%)

Query: 29  QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88
           +  IL R + WQ  ++R G +K+K R EV   G K + QKG+GRAR  S     FRGGG 
Sbjct: 2   RIDILHRYVVWQLAKRRAGTAKTKNRGEVRGGGRKPWPQKGSGRARQGSIRAPHFRGGGT 61

Query: 89  AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148
             GP P       P+KVRS+A+R ALS KF   D+ ++D+   +  KT+ L       + 
Sbjct: 62  VHGPRPRSYDFTFPRKVRSMAIRVALSVKFAQGDLYIVDSFGLETHKTQNLKDLLDQRNW 121

Query: 149 SNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            +AL++DG   +D N +LAARNI   ++LP   +NV+ +L+   LVLS  A++ L++R 
Sbjct: 122 YSALLVDGNTYVDENLRLAARNIQKCDVLPSYALNVHMMLKRHALVLSLPALKILQERL 180


>gi|82701901|ref|YP_411467.1| 50S ribosomal protein L4 [Nitrosospira multiformis ATCC 25196]
 gi|109893611|sp|Q2YAZ6|RL4_NITMU RecName: Full=50S ribosomal protein L4
 gi|82409966|gb|ABB74075.1| LSU ribosomal protein L4P [Nitrosospira multiformis ATCC 25196]
          Length = 206

 Score =  166 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 103/206 (50%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL + + +G+    +S SE +F  +  + ++ +V+       R      K RS+VA + 
Sbjct: 1   MELKLIDYNGQSSASVSASETLFGREYNEALVHQVVTAYLANARSANRAQKARSDVAKST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGGK F   P     H + +K+    +   LS     
Sbjct: 61  RKPWRQKGTGRARAGMASSPLWRGGGKIFPNSPEENFSHKVNRKMYRAGIGAILSQLVRE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + V++N +    KTK L  + + + L   +II    +D N  L++RN+P + ++    
Sbjct: 121 NRLSVVENFIVDAPKTKILAQKLKDMGLDQVMII-TDNIDENLYLSSRNLPLVKVVEAGY 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++R + ++++++A+  +E+  
Sbjct: 180 ADPVSLMRFANVLITRNALAKMEEAL 205


>gi|253995719|ref|YP_003047783.1| 50S ribosomal protein L4/L1e [Methylotenera mobilis JLW8]
 gi|253982398|gb|ACT47256.1| ribosomal protein L4/L1e [Methylotenera mobilis JLW8]
          Length = 208

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL + + +G+     ++VSE  F  +  + ++ +V+       R      KGR  VA+T
Sbjct: 1   MELKLIDKNGKPAKKGVTVSEGTFGREFNEALVHQVVVGYMANARTATRAQKGRDTVAHT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFC 119
             K Y QKGTG AR    S   +RGGG+AF   P     H + +K     ++  LS+   
Sbjct: 61  THKPYAQKGTGNARSGMSSSPIWRGGGRAFPNSPNENFSHKVNRKAYRAGMQTILSELVR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            + + V++       KTK L  + + +  +  +++     + N  L++RN+ N+ ++  Q
Sbjct: 121 QDRLSVVEEFSVDTPKTKALAEKVKGMGYAGGVLVLTDSFNENLYLSSRNLTNVMVVEAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             +   ++R   +V ++ A++ LE+  
Sbjct: 181 FADPVSLVRFPNVVATEGAVKKLEEML 207


>gi|116075766|ref|ZP_01473025.1| 50S ribosomal protein L4 [Synechococcus sp. RS9916]
 gi|116067081|gb|EAU72836.1| 50S ribosomal protein L4 [Synechococcus sp. RS9916]
          Length = 211

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V++  G+D G  S+   +        ++ R +  Q    R G + +  R+EV   
Sbjct: 1   MANCVVKDWQGKDAGKASLELKVAKETTANDLMHRAVLRQQAHSRQGTASTLTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P     A+ +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRLALRTALMARVED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++       +  KT+ +        +     +++         + + RN+  + L+  
Sbjct: 121 LVVVKDFGTNLEAPKTREITDALGRLGIAADAKVLLVLTNPSEVVRRSVRNLEKVKLIAA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LV+ ++A+  +++ +
Sbjct: 181 DQLNVFDLLNANNLVVGETALATIQEVY 208


>gi|328955913|ref|YP_004373246.1| LSU ribosomal protein L4P [Coriobacterium glomerans PW2]
 gi|328456237|gb|AEB07431.1| LSU ribosomal protein L4P [Coriobacterium glomerans PW2]
          Length = 208

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V+N +G       ++  ++ ++P   I+  +++ Q    R G   +K R EV   
Sbjct: 1   MSKIEVKNAEGSKVTETELASAVYGIEPNIHIMHHIVKCQMACWRRGTQSTKSRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+R GG  FGP P      +  K   LA+R ALS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRAGQWRHGGVIFGPKPRSYAKRMNNKEVKLAMRSALSAKLRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++++V+D+    +  TK  +   R+L+L    + I   + D N  L+ RNIP   ++   
Sbjct: 121 DELVVVDDYGFDKPSTKAAMRLIRSLELEGKRLTIIVREDDVNAYLSFRNIPRTFIITPN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             N +D++    L++         +  
Sbjct: 181 EANTHDLVNNGALLMPADVAVHFGEVL 207


>gi|297537532|ref|YP_003673301.1| 50S ribosomal protein L4/L1e [Methylotenera sp. 301]
 gi|297256879|gb|ADI28724.1| ribosomal protein L4/L1e [Methylotenera sp. 301]
          Length = 208

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL +++ +G+     ++VS+D F  +  + ++ +V+       R      KGR  VA+T
Sbjct: 1   MELKLQDKNGKAVKAGVTVSDDTFGREFNEALVHQVVVAYMANARTATRAQKGRGNVAHT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
             K Y QKGTG AR    S   +RGGG+AF   P     H + +K     ++  LS+   
Sbjct: 61  THKPYAQKGTGNARAGMTSSPIWRGGGRAFPSSPLENFSHKINRKAYRAGMQTILSELVR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + V++  V    KTK    + + L     +++     D N  L++RN+ N+ ++  Q
Sbjct: 121 QERLNVVEEFVVATPKTKAFAEKIKNLGFEGGVLVLTDGFDENLYLSSRNLINVMVVEAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             +   ++R   +V + +A++ LE+  
Sbjct: 181 FADPVSLVRFPNVVATVAAVKKLEEML 207


>gi|319942174|ref|ZP_08016490.1| 50S ribosomal protein L4 [Sutterella wadsworthensis 3_1_45B]
 gi|319804227|gb|EFW01119.1| 50S ribosomal protein L4 [Sutterella wadsworthensis 3_1_45B]
          Length = 206

 Score =  165 bits (417), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 100/208 (48%), Gaps = 6/208 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL+V N  G+    +  ++ +F  +  + ++ +++       R+G      R +V ++ 
Sbjct: 1   MELNVLNEQGK---TVEAADAVFGREYNEALVHQIVVAFQANARLGTRAQLNRRDVHHST 57

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +R GG+AF   P       L KK+    +    S     
Sbjct: 58  KKPWRQKGTGRARSGMTSSPLWRSGGRAFPNTPDENFSQKLNKKMFRAGMASIYSKLVAD 117

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--IDGCQLDRNFQLAARNIPNINLLPV 178
              +V++ + +   KTK   ++ + L L+   +  +D  +LD N  LA+RN+ ++ ++  
Sbjct: 118 ARFVVVETIKADLPKTKAFASQLKTLGLTARTLIIVDESELDDNLILASRNLKDVLVVTP 177

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           +  +   ++   K+V +K+A+  +++  
Sbjct: 178 RFADPLCLIYFDKVVATKAAVAQIQEML 205


>gi|322812576|pdb|3PYO|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From
           The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
           File Contains The 50s Subunit Of The First 70s Ribosome.
 gi|322812629|pdb|3PYR|E Chain E, Crystal Structure Of A Complex Containing Domain 3 From
           The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
           File Contains The 50s Subunit Of The Second 70s
           Ribosome.
 gi|322812682|pdb|3PYT|E Chain E, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
           Igr Ires Rna Bound To The 70s Ribosome. This File
           Contains The 50s Subunit Of The First 70s Ribosome.
 gi|322812735|pdb|3PYV|E Chain E, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
           Igr Ires Rna Bound To The 70s Ribosome. This File
           Contains The 50s Subunit Of The Second 70s Ribosome
          Length = 202

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +  G  +    +       +    +L  V+RWQ  ++R G + +K R EVAY+
Sbjct: 1   MYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 55

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+   
Sbjct: 56  GRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRARE 115

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +++++       KTK  +   +   L  +  +     +   + AARN+P +  L  +G
Sbjct: 116 GKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEG 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +NVYDI+R  +LV+   A E  ++R
Sbjct: 176 LNVYDIVRTERLVMDLDAWEVFQNR 200


>gi|313204918|ref|YP_004043575.1| LSU ribosomal protein l4p [Paludibacter propionicigenes WB4]
 gi|312444234|gb|ADQ80590.1| LSU ribosomal protein L4P [Paludibacter propionicigenes WB4]
          Length = 209

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 2/208 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E+ V N  GED G V+S+++ IF ++P    +   ++     +R G   SKGRS+++ +
Sbjct: 1   MEVKVVNTKGEDTGRVVSLNDTIFGIEPNDHAIYLDVKQYLANQRQGTHSSKGRSQLSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG G AR          GGG+ FGP P      L KKV+ LA + ALS K  +
Sbjct: 61  TRKLGKQKGGGGARPGDIKSGVRVGGGRMFGPTPRDYSFKLNKKVKQLARKSALSYKALN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I V++N   +  KTK  V+  ++        +I     ++N  L+ARN+ +  ++ V 
Sbjct: 121 NLITVVENFNFEAPKTKDFVSMTKSLQVADKKPLIVLANANKNVYLSARNLASSKVITVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            ++ Y +L    LVL++ A+ A+E  FK
Sbjct: 181 ELSTYVVLNAKSLVLTEDAVVAVEQIFK 208


>gi|209156522|pdb|3D5B|F Chain F, Structural Basis For Translation Termination On The 70s
           Ribosome. This File Contains The 50s Subunit Of One 70s
           Ribosome. The Entire Crystal Structure Contains Two 70s
           Ribosomes As Described In Remark 400.
 gi|209156576|pdb|3D5D|F Chain F, Structural Basis For Translation Termination On The 70s
           Ribosome. This File Contains The 50s Subunit Of The
           Second 70s Ribosome. The Entire Crystal Structure
           Contains Two 70s Ribosomes As Described In Remark 400.
 gi|218766799|pdb|3F1F|F Chain F, Crystal Structure Of A Translation Termination Complex
           Formed With Release Factor Rf2. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes As Described In
           Remark 400.
 gi|218766855|pdb|3F1H|F Chain F, Crystal Structure Of A Translation Termination Complex
           Formed With Release Factor Rf2. This File Contains The
           50s Subunit Of The Second 70s Ribosome. The Entire
           Crystal Structure Contains Two 70s Ribosomes As
           Described In Remark 400
          Length = 210

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +  G  +    +       +    +L  V+RWQ  ++R G + +K R EVAY+
Sbjct: 6   MYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+   
Sbjct: 61  GRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +++++       KTK  +   +   L  +  +     +   + AARN+P +  L  +G
Sbjct: 121 GKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEG 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +NVYDI+R  +LV+   A E  ++R
Sbjct: 181 LNVYDIVRTERLVMDLDAWEVFQNR 205


>gi|46199629|ref|YP_005296.1| 50S ribosomal protein L4 [Thermus thermophilus HB27]
 gi|161986604|ref|YP_144957.2| 50S ribosomal protein L4 [Thermus thermophilus HB8]
 gi|81567621|sp|Q72I05|RL4_THET2 RecName: Full=50S ribosomal protein L4
 gi|149240889|pdb|1VSA|D Chain D, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
           Functional Interactions And Rearrangements. This File,
           1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
           Subunit Is In The File 2ow8
 gi|160285431|pdb|1VSP|D Chain D, Interactions And Dynamics Of The Shine-Dalgarno Helix In
           The 70s Ribosome. This File, 1vsp, Contains The 50s
           Ribosome Subunit. 30s Ribosome Subunit Is In The File
           2qnh
 gi|300508633|pdb|3MRZ|E Chain E, Recognition Of The Amber Stop Codon By Release Factor Rf1.
           This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
           Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
           Molecule A In The Same Asymmetric Unit Is Deposited As
           3mr8 (50s) And 3ms1 (30s).
 gi|300508688|pdb|3MS1|E Chain E, Recognition Of The Amber Stop Codon By Release Factor Rf1.
           This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
           Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
           Molecule B In The Same Asymmetric Unit Is Deposited As
           3mrz (50s) And 3ms0 (30s).
 gi|46197255|gb|AAS81669.1| LSU ribosomal protein L1E [Thermus thermophilus HB27]
          Length = 205

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +  G  +    +       +    +L  V+RWQ  ++R G + +K R EVAY+
Sbjct: 1   MYQIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 55

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+   
Sbjct: 56  GRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRARE 115

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +++++       KTK  +   +   L  +  +     +   + AARN+P +  L  +G
Sbjct: 116 GKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEG 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +NVYDI+R  +LV+   A E  ++R
Sbjct: 176 LNVYDIVRTERLVMDLDAWEVFQNR 200


>gi|291290889|ref|NP_001167475.1| mitochondrial ribosomal protein L4 [Xenopus laevis]
 gi|161611723|gb|AAI55897.1| Unknown (protein for MGC:181787) [Xenopus laevis]
          Length = 298

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           S+++ D +  G++ +  D+F + P+  IL +V+ WQ   KRI  +K K R+EV   G K 
Sbjct: 73  SLKHPDDQQLGLVHLHPDVFTVPPRIDILHQVITWQRNFKRISYAKVKTRAEVRGGGKKP 132

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
             QKG+GR+R  S     +RGGG A GP  P    + +P K+R L L+ AL+ K   +D+
Sbjct: 133 RQQKGSGRSRQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKLRVLGLKIALTTKLAQDDL 192

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGI 181
            +ID+L       +YL+         ++++I      L  N   A  N+  IN++P  G+
Sbjct: 193 HIIDSLEISTPDPQYLIDLVNHRQWGDSVLIVDVNENLPENIFNATINLKKINVIPATGL 252

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV+ +L+   +VL+ +A++ LE++ 
Sbjct: 253 NVFSMLKHDTVVLTVAAVDFLEEKL 277


>gi|313158262|gb|EFR57664.1| 50S ribosomal protein L4 [Alistipes sp. HGB5]
          Length = 208

 Score =  164 bits (416), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL+V N  G++ G  + +S+ +F ++     +   ++     +R G  KSK R+EVA +
Sbjct: 1   MELAVLNTQGKETGRKVVLSDAVFGVEANDHAIYLDVKQYLADQRQGTHKSKQRNEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG+ FGP P      L KK++ LA R AL+ K  +
Sbjct: 61  TRKLKRQKGTGGARCGSIKSPLFPGGGRIFGPQPRDYSFKLNKKLKQLARRSALTYKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I V++ L     KTK +V    A       +++   + + N QL+ RN+P +  +  Q
Sbjct: 121 GAISVVETLSLDAPKTKAVVALADALKVADKKVLLVLPESNANLQLSCRNLPYVQPVLAQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +  YD++  S +V+ + A   L    
Sbjct: 181 NVCTYDVMNASAIVMVEGAENVLNTML 207


>gi|88812756|ref|ZP_01128002.1| 50S ribosomal protein L4 [Nitrococcus mobilis Nb-231]
 gi|88789994|gb|EAR21115.1| 50S ribosomal protein L4 [Nitrococcus mobilis Nb-231]
          Length = 201

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +R    E  G + VSE  F  + ++ ++ +V+       R G    K R+ V   G
Sbjct: 1   MELPLR----EGAGAVQVSERTFGAEFKEPLIHQVVVAYLAGGRAGSKAQKDRAAVRGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  S     +RGGG++F   P      + +K+   ALR  LS+     
Sbjct: 57  AKPWRQKGTGRARAGSIRSPLWRGGGRSFASAPRDHSQKVNRKMYRGALRAILSELVRQE 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V++     + KTK L+    +L  ++  +I   +   N +LAARN+  +++     +
Sbjct: 117 RLCVMERFDLAQPKTKLLLDELGSLGFADV-LIVSNEPSENVRLAARNLAAVDVWETNRL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N   +LR  K++L+  A+  LE+  
Sbjct: 176 NPVVLLRHEKVLLTVDAVHRLEEWL 200


>gi|94968255|ref|YP_590303.1| 50S ribosomal protein L4 [Candidatus Koribacter versatilis
           Ellin345]
 gi|166234624|sp|Q1ISC1|RL4_ACIBL RecName: Full=50S ribosomal protein L4
 gi|94550305|gb|ABF40229.1| LSU ribosomal protein L4P [Candidatus Koribacter versatilis
           Ellin345]
          Length = 217

 Score =  164 bits (415), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 1/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + V NL GE  G   +++++F     + +L   ++     +  G   +K +  V+  
Sbjct: 1   MATIDVVNLSGEKVGSFELADEVFGA-VNEDLLWEAVKHYRAGQHRGTHATKNKKLVSGA 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QKGTGRAR  S     +R GG   GP P    +A P+K    ALR AL+ K   
Sbjct: 60  GKKLWKQKGTGRARVGSIRSPLWRHGGTVHGPQPRSYDYAFPRKKLLGALRSALAAKLAD 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+++   KE K          L +    ++     ++N +L++RN+  + L+    
Sbjct: 120 GKLTVVESFDVKEPKANAFRKTLAGLKVDKTALLIESAENKNLELSSRNLKGVELVAGNA 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++ Y +LR  + V+++ A+E L++  K
Sbjct: 180 VHPYHLLRYDRAVIARPALEKLQNSLK 206


>gi|297170807|gb|ADI21827.1| hypothetical protein [uncultured gamma proteobacterium
           HF0130_25M15]
          Length = 205

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ ++N +      I +S+ +F  +   G++  ++       R      K RS V+  G
Sbjct: 1   MKIDLKNQENSTVKSIDISDSVFKAEINDGLIHELVTAYRSNGRSATKGQKNRSRVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     + GGG AF  V       + KK    A++   S      
Sbjct: 61  AKPWRQKGTGRARAGTTRGPLWVGGGMAFATVDRNYTKKINKKAYKRAMQSIFSALTKEK 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I+ ID++     KTK  +    +L++ NALII   QL+ N  L+ RN+P+I ++ V+ +
Sbjct: 121 RIIAIDSIKIDSPKTKLGIELLNSLEIENALIIV-SQLESNLHLSLRNVPHITVISVENV 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   +L    +V+ + A   LE  F
Sbjct: 180 DPISLLSHETIVIDQEAFNKLEGMF 204


>gi|83814571|ref|YP_445168.1| ribosomal protein L4/L1 family protein [Salinibacter ruber DSM
           13855]
 gi|109893635|sp|Q2S3R3|RL4_SALRD RecName: Full=50S ribosomal protein L4
 gi|83755965|gb|ABC44078.1| ribosomal protein L4/L1 family [Salinibacter ruber DSM 13855]
          Length = 215

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++ +   DG + G   ++   +F ++P   I+   ++     +R G SK+K R EV  +
Sbjct: 1   MDVEIYQEDGVESGETAALDPTVFDIEPNDHIIWLDVKRIQAHQRQGTSKTKERGEVRGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K+Y QKGTG AR         RGGG+A G  P    H L +K + LA R ALS K  +
Sbjct: 61  GRKLYRQKGTGNARVGDAQSPIRRGGGRAHGARPRDYAHDLNQKEKRLARRSALSYKAAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++I VI+N       T+ L   F  L +    +++   +++R   L+++N+P++N+  VQ
Sbjct: 121 DNIQVIENFSLDRPDTRGLTDLFELLGVEGQDILLATAEVEREVYLSSQNLPDVNVQEVQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN  DIL    ++L + A++ L D  
Sbjct: 181 SINTVDILDADVVLLQEGALDWLTDVL 207


>gi|167752386|ref|ZP_02424513.1| hypothetical protein ALIPUT_00630 [Alistipes putredinis DSM 17216]
 gi|167660627|gb|EDS04757.1| hypothetical protein ALIPUT_00630 [Alistipes putredinis DSM 17216]
          Length = 208

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL+V N  G++ G  + +S+ +F ++     +   ++     +R G  KSK R+EVA +
Sbjct: 1   MELAVLNTQGKETGRKVVLSDAVFGVEANDHAIYLDVKQYLADQRQGTHKSKQRNEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     F GGG+ FGPVP      L KK++ LA R AL+ K  +
Sbjct: 61  TRKLKRQKGTGGARCGSIKSPLFVGGGRVFGPVPRDYSFKLNKKLKQLARRSALTYKAQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I V++ +     KTK +V    A       +++     + N QL+ RN+P +  +   
Sbjct: 121 GAICVVEPISMDAPKTKSIVAMAEALKVADKKVLLVLPDSNVNLQLSCRNLPYVKAILAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y+++  S LV+ + A   L    
Sbjct: 181 NVNTYEVMNASALVMVEGAENILNTML 207


>gi|300870646|ref|YP_003785517.1| 50S ribosomal protein L4 [Brachyspira pilosicoli 95/1000]
 gi|46577291|sp|Q9FA03|RL4_BRAPL RecName: Full=50S ribosomal protein L4
 gi|11036694|gb|AAG27265.1| L4 ribosomal protein [Brachyspira pilosicoli]
 gi|300688345|gb|ADK31016.1| 50S ribosomal protein L4 [Brachyspira pilosicoli 95/1000]
          Length = 215

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 104/214 (48%), Gaps = 8/214 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+ + N +G+  G + V ++IF  +    +L   ++ +   +R G   +K R+EV+  G
Sbjct: 1   MEVVILNENGDSVGNLEVVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     + GGGK   P P    + LPKK++  AL   LS K+ +N
Sbjct: 61  KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGNN 120

Query: 122 DIMVIDNLVSKECKTKYL---VTRFRALDLSNALIIDGCQLD-----RNFQLAARNIPNI 173
            + V ++      KTK +   +++ +  +      + G             L+ RNI ++
Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNSRKVAFVVGKDESLGDNYNKLLLSLRNIKDL 180

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
            L+    ++++ +    ++  +K+A+  L  R K
Sbjct: 181 KLVNADSMSIHPLYYADEVYFTKTALSKLNARIK 214


>gi|294507052|ref|YP_003571110.1| 50S Ribosomal protein L4 [Salinibacter ruber M8]
 gi|294343380|emb|CBH24158.1| 50S Ribosomal protein L4 [Salinibacter ruber M8]
          Length = 215

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 108/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++ +   DG + G   ++   +F ++P   I+   ++     +R G SK+K R EV  +
Sbjct: 1   MDVEIYQEDGVESGETAALDPTVFDIEPNDHIIWLDVKRIQAHQRQGTSKTKERGEVRGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K+Y QKGTG AR         RGGG+A G  P    H L +K + LA R ALS K  +
Sbjct: 61  GRKLYRQKGTGNARVGDAQSPIRRGGGRAHGARPRDYAHDLNQKEKRLARRSALSYKAAN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +I VI+N       T+ L   F  L +    +++   +++R   L+++N+P++N+  VQ
Sbjct: 121 ENIQVIENFSLDRPDTRGLTDLFELLGVEGQDILLATAEVEREVYLSSQNLPDVNVQEVQ 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            IN  DIL    ++L + A++ L D  
Sbjct: 181 SINTVDILDADVVLLQEGALDWLTDVL 207


>gi|262203623|ref|YP_003274831.1| 50S ribosomal protein L4/L1e [Gordonia bronchialis DSM 43247]
 gi|262086970|gb|ACY22938.1| ribosomal protein L4/L1e [Gordonia bronchialis DSM 43247]
          Length = 221

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 1/201 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L V+  DG+  G + +  ++F       ++ +V+  Q    R G   +K R +V   G+
Sbjct: 10  TLDVKTADGKTNGTVDLPAELFDAPANIALMHQVVVAQQAAARQGTHATKTRGDVRGGGA 69

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  
Sbjct: 70  KPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNER 129

Query: 123 IMVIDNLVSKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           I VI  LVS +   TK       +L      ++   + D     +  N+ N+  +    +
Sbjct: 130 IHVITELVSGQVPSTKSARQFLESLSDRRKFLVVLGREDLTAWKSVANLGNVLPIAPDQL 189

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           N YD+L   ++V S   + A 
Sbjct: 190 NTYDVLYSDEVVFSVETLNAF 210


>gi|124026707|ref|YP_001015822.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL1A]
 gi|123961775|gb|ABM76558.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL1A]
          Length = 212

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M   +V +  G++ G  S+            +L R +  Q    R G + +  RSEV   
Sbjct: 2   MTNCTVLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGG 61

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 62  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRISD 121

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             I+       +  KT  +V   +   +D    ++I   +     + + +N+  + L+  
Sbjct: 122 AKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSEIIKRSIKNLEKVKLISA 181

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LV+ + A+  +++ +
Sbjct: 182 DQLNVFDLLNANSLVIGEDALSTIKEVY 209


>gi|86610029|ref|YP_478791.1| 50S ribosomal protein L4 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|109893646|sp|Q2JIM6|RL4_SYNJB RecName: Full=50S ribosomal protein L4
 gi|86558571|gb|ABD03528.1| ribosomal protein L4 [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 316

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V+N  GE  G   +S  +   +    IL   LR Q    R G + +K R+EV   
Sbjct: 1   MASCVVKNWQGETVGSAELSLKVARPETAAHILYLALRRQMTNARQGNAHTKTRAEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     +R GG  FGP       A+ +K R LALR AL  +   
Sbjct: 61  GRKPWKQKGTGRARAGSIRSPLWRKGGVIFGPRKREYNLAMNRKERQLALRTALQSRVED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPV 178
             ++          KT+ +        +    + ++   +     + A RNI  + L+ +
Sbjct: 121 LIVVEDFQEQLNPPKTRAVAQALLRWGVMEDQSALLIVAERSEAVERAVRNIARVKLIGL 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             INV+D+L    ++++ SA+E L+ R+
Sbjct: 181 DQINVFDLLNVDWVLITVSALEQLKARW 208


>gi|218294755|ref|ZP_03495609.1| ribosomal protein L4/L1e [Thermus aquaticus Y51MC23]
 gi|218244663|gb|EED11187.1| ribosomal protein L4/L1e [Thermus aquaticus Y51MC23]
          Length = 213

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 108/204 (52%), Gaps = 5/204 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V +  G+      ++ ++   +    +L  V+RWQ   +R G + +K R EVAY+G 
Sbjct: 11  QIPVISPAGKR----ELAANLPG-EVNPHLLWEVVRWQLASRRRGTASTKTRGEVAYSGR 65

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K+Y QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+     
Sbjct: 66  KIYPQKHTGRARHGDIGAPIFVGGGTVFGPKPRDYSYTLPKKVRKAGLAMAVADRAKEGK 125

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +++++  +  + KT+  +   + + L  +  +     D   + AARN+P +  L  +G+N
Sbjct: 126 LLLVEAFLGVQGKTREFLAWAKEVGLDGSETVLLVTADEAVRRAARNLPWVVTLAPEGLN 185

Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206
           VYDILR  +LV+   A E  ++R 
Sbjct: 186 VYDILRTGRLVMDLKAWEVFQERL 209


>gi|302337478|ref|YP_003802684.1| ribosomal protein L4/L1e [Spirochaeta smaragdinae DSM 11293]
 gi|301634663|gb|ADK80090.1| ribosomal protein L4/L1e [Spirochaeta smaragdinae DSM 11293]
          Length = 209

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 107/205 (52%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V ++ GE+   I++++ +F  +  +G +   +  +   +R+G + +K R+EV  + 
Sbjct: 1   MDAKVFSIKGEEVRTIALNDSVFGREVSEGAIYYAVNSELANRRVGTACTKTRAEVKGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SK + QKGTG AR   K    + GGG  FGP P      LPKK++ LA++  LS K   +
Sbjct: 61  SKPWRQKGTGHARSGDKKSPVWVGGGTIFGPKPRDYGFRLPKKMKRLAMKSVLSLKAKED 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            I V+++   +  KTK LV   +AL      ++     D   + A +NIP + +L    +
Sbjct: 121 AIKVVEDFTVESGKTKDLVGILKALVPEKRTVVVLKDDDAMIRRAGKNIPWVRMLSYNRM 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +V ++     +VL ++A  +L D +
Sbjct: 181 SVRELFYGKNIVLLETAAGSLNDFY 205


>gi|72382966|ref|YP_292321.1| 50S ribosomal protein L4 [Prochlorococcus marinus str. NATL2A]
 gi|109893619|sp|Q46IR0|RL4_PROMT RecName: Full=50S ribosomal protein L4
 gi|72002816|gb|AAZ58618.1| LSU ribosomal protein L4P [Prochlorococcus marinus str. NATL2A]
          Length = 211

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M   +V +  G++ G  S+            +L R +  Q    R G + +  RSEV   
Sbjct: 1   MTNCTVLDWQGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S       GGG  FGP P      + +K R LALR AL  +   
Sbjct: 61  GRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRLALRTALMSRIPD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
             I+       +  KT  +V   +   +D    ++I   +     + + +N+  + L+  
Sbjct: 121 AKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSEIIKRSIKNLEKVKLISA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV+D+L  + LV+ + A+  +++ +
Sbjct: 181 DQLNVFDLLNANSLVIGEDALSTIKEVY 208


>gi|171700382|gb|ACB53363.1| 50S ribosomal protein L4 [Cyanothece sp. ATCC 51142]
          Length = 188

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)

Query: 31  GILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAF 90
            +L R +       R G + +K R+EV   G K + QKGTGRAR  S     +RGGG  F
Sbjct: 9   HLLHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIF 68

Query: 91  GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150
           GP P      + +K R LALR A+  +     ++        + KTK L +      +  
Sbjct: 69  GPKPRDFSLKMNRKERRLALRTAIGSRVEDMIVVENFAEQLPQPKTKELASALTRWGVEP 128

Query: 151 ALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
              +     + D N  L+ARN+ ++ +L    +NVYD+L   K+V++  AI  +++ +
Sbjct: 129 TQKVALVLVETDANIYLSARNLCHVKILRADSLNVYDLLDADKIVITSEAISKIQEVY 186


>gi|325287049|ref|YP_004262839.1| 50S ribosomal protein L4/L1e [Cellulophaga lytica DSM 7489]
 gi|324322503|gb|ADY29968.1| ribosomal protein L4/L1e [Cellulophaga lytica DSM 7489]
          Length = 209

 Score =  164 bits (414), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 2/203 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V +  G+D G  + +S+ +FA++P +  +   ++     +R G  KSK R+E+A +
Sbjct: 1   MKVAVLDSKGKDTGRKVDLSDSVFAIEPNKHAVYLDVKQYLAHQRQGNHKSKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K V+ LA + A S K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYKQKLNKNVKRLARKSAFSIKQNE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I+V+++      KTK      ++    +   +I     + N  L++RN+    ++   
Sbjct: 121 NAILVVEDFNFDAPKTKEFTQVLKSLGIENKKSLIVLGDSNNNVYLSSRNLKRSEVVINS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            ++ Y IL  S +VL +SA+E +
Sbjct: 181 ELSTYKILNASSVVLCESALEGI 203


>gi|330814198|ref|YP_004358437.1| LSU ribosomal protein L4p (L1e) [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487293|gb|AEA81698.1| LSU ribosomal protein L4p (L1e) [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 209

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L   N++G+  G   VS+ +F+LKP++ ++  V+ WQ   +R     +K R EV  + 
Sbjct: 1   MKLEEINIEGKKIGTHEVSDQVFSLKPRKDLIQLVINWQLNNQRKKKGHTKSRGEVKGSR 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH--ALPKKVRSLALRHALSDKFC 119
            K+  QKG+G ARH + +   F GGG A GP          L KKV++L L  ALS K  
Sbjct: 61  RKIVQQKGSGGARHGNITAPIFVGGGIAHGPRHRGQTRLTKLNKKVKNLGLISALSSKVL 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + +I + D       KTK        L+  +ALII        F  + +NIPN   + V 
Sbjct: 121 TKNINIFDEPKLDTFKTKSFNNFLSKLESKSALIIHHDGASEKFIKSMKNIPNTKRIKVV 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G NVYD+++  K++ +K AI+ LE+R 
Sbjct: 181 GTNVYDLIKFEKILFTKEAIKTLEERL 207


>gi|328875550|gb|EGG23914.1| hypothetical protein DFA_06052 [Dictyostelium fasciculatum]
          Length = 333

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 3/203 (1%)

Query: 5   SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
            V + + +   G I++   +F +  +  +L R++RWQ  + R G   ++   +V  T  K
Sbjct: 110 QVIDFNSKQVVGEINLLNSVFKVPLRIDLLHRMIRWQRAKARQGTHYAQNMGDVERTNKK 169

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
              QKG GRAR  +    Q  GG +AF P P    H+L KKVR  AL  ALS K     +
Sbjct: 170 PMAQKGNGRARQGTNHAIQMVGGARAFPPKPRDHSHSLQKKVRKQALCVALSTKLAQGKL 229

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183
           +++D+L  +  KTK LV      +     ++   +   NF LAA NI NI+L+P +GINV
Sbjct: 230 IIVDDLQVETHKTKELVQLL--PEAWGRSLLVNNEFSNNFNLAAYNIINIDLVPDRGINV 287

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
           Y IL+   LV+SK +IE L+ R 
Sbjct: 288 YSILQKDTLVISKKSIEILQARL 310


>gi|313472594|ref|ZP_07813083.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
           1153]
 gi|313448951|gb|EFR61269.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
           1153]
          Length = 178

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 2/175 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G+D G +++++++F ++P + ++   +  Q    R G   +K RS V   
Sbjct: 1   MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    ++LP+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINL 175
           N+++V+D L     KTK        L++ + +++     + N QL+ARN+  + L
Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSD--NENVQLSARNLETLRL 173


>gi|1033073|gb|AAA97862.1| ribosomal protein L4 [Thermus thermophilus]
 gi|1586538|prf||2204237A ribosomal protein L4
          Length = 210

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V +  G       +       +    +L  V+RWQ  ++R G + +K R EVAY+G 
Sbjct: 8   QIPVLSPSGRRDVAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K++ QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+     
Sbjct: 63  KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +++++       KTK  +   +   L  +  +     +   + AARN+P +  L  +G+N
Sbjct: 123 LLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEGLN 182

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VYDI+R  +LV+   A E  ++R
Sbjct: 183 VYDIVRTERLVMDLDAWEVFQNR 205


>gi|62857671|ref|NP_001017222.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis]
 gi|89268693|emb|CAJ82705.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis]
          Length = 298

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/200 (33%), Positives = 107/200 (53%), Gaps = 3/200 (1%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           D +  G++ +  D+F + P+  IL +V+ WQ   KRI  +K K R+EV   G K   QKG
Sbjct: 78  DDQPLGLVHLHPDVFTVPPRIDILHQVVTWQRNFKRISHAKVKTRAEVRGGGKKPRQQKG 137

Query: 70  TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
           +GRAR  S     +RGGG A GP  P    + +P K+R   L+ AL+ K   +D+ VID+
Sbjct: 138 SGRARQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKMRVQGLKIALTAKLAQDDLHVIDS 197

Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           L       +YLV   +      +++I      L  N   A  N+  IN++P  G++V+ +
Sbjct: 198 LEISTPDPQYLVDLIKHRQWGESVLIVDVNENLPENLFNATVNLKKINVIPAIGLSVFGM 257

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           L+   +VL+  A++ LE++ 
Sbjct: 258 LKHDTVVLTVGAVDFLEEKL 277


>gi|313665576|ref|YP_004047447.1| 50S ribosomal protein L4 [Mycoplasma leachii PG50]
 gi|312949403|gb|ADR23999.1| 50S ribosomal protein L4 [Mycoplasma leachii PG50]
          Length = 208

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 2/196 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V +  G +   I++++ ++ ++P Q  +   +  Q    R G  K K R+EV+  G
Sbjct: 1   MKLQVLDTKGNEIKEIALNDYVWGIEPHQQAIYDTVISQQAALRQGTKKVKTRAEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  S    Q++GGG  FGP P I     + KKVR+LA R  LS K   
Sbjct: 61  RKPWKQKGTGRARQGSIRAPQWKGGGVTFGPTPDINYKKSVNKKVRALAFRSVLSLKVKE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+++++D     +  TK +V   +         +I   + +     ++ NI  +  +   
Sbjct: 121 NNLVIVDKFDFAKPSTKEMVLVMKNLKIDDQKTLIVTKEKEELVVKSSNNITGVKTISAN 180

Query: 180 GINVYDILRCSKLVLS 195
            +NV+D+L  +KL+++
Sbjct: 181 QLNVFDLLNATKLLIT 196


>gi|7674307|sp|Q9ZI49|RL4_AQUPY RecName: Full=50S ribosomal protein L4
 gi|4165866|gb|AAD08786.1| ribosomal protein L4 [Aquifex pyrophilus]
          Length = 199

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 2/195 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G + V +D+F +K ++ +L  V++WQ  ++R G   +K R EVAY+G K+  QKGTG 
Sbjct: 2   KIGDVEVRDDVFNVKVKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGN 61

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS- 131
           ARH  + V+ F GGG A GP P    + LPKKVR L L+ ALSDK  ++ IM +DN+   
Sbjct: 62  ARHGERGVNIFVGGGVAHGPKPRDYEYPLPKKVRKLGLKMALSDKAQNDAIMFVDNIDLG 121

Query: 132 KECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
           ++ KTK  V   +        L+I   + +     + RN+ N+ +L  +G+NVYD+L  +
Sbjct: 122 EQPKTKKAVEFLKNLGVDKETLLIVIPEKNEVLYKSFRNLQNVRVLLPEGLNVYDVLWAN 181

Query: 191 KLVLSKSAIEALEDR 205
           KLV+ K  ++ +  +
Sbjct: 182 KLVIHKECLDRIYKK 196


>gi|320451299|ref|YP_004203395.1| 50S ribosomal protein L4/L1 family [Thermus scotoductus SA-01]
 gi|320151468|gb|ADW22846.1| 50S ribosomal protein L4/L1 family [Thermus scotoductus SA-01]
          Length = 205

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V +  G+ +    +       +    +L  V+RWQ  ++R G + +K R EVAY+
Sbjct: 1   MYQIPVLSSSGKRELAADLP-----QEVNPHLLWEVVRWQLAKRRRGTASTKTRGEVAYS 55

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+   
Sbjct: 56  SRKIYPQKHTGRARHGDIGAPIFVGGGTVFGPKPRDYSYTLPKKVRQAGLAMAVADRAKE 115

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++++      KTK  +   +   L  +  +         + AARN+P +  L  +G
Sbjct: 116 GKLLLVEDFAGVNGKTKEFLAWAKGAGLDGSESVLLVTASELVRRAARNLPWVVTLAPEG 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +NVYDILR  +LV+  +A EA + R
Sbjct: 176 LNVYDILRTERLVMDLAAWEAFQAR 200


>gi|225010518|ref|ZP_03700989.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-3C]
 gi|225005347|gb|EEG43298.1| ribosomal protein L4/L1e [Flavobacteria bacterium MS024-3C]
          Length = 209

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 104/204 (50%), Gaps = 2/204 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++++V +  G+D G    +S+ +FA+ P    +   ++     +R G  KSK R+E+A +
Sbjct: 1   MKVAVLDSKGKDTGRKADLSDAVFAIDPNNHAIYLDVKQYLAHQRQGTHKSKERAEIAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKGTG AR  S     FRGGG+ FGP P      L K V+ LA + ALS K   
Sbjct: 61  TRKIKKQKGTGTARAGSIKSPVFRGGGRIFGPRPKDYTQKLNKNVKRLARKSALSIKAGE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             I+V+++      KTK  +   ++    +   ++     + N  L++RN+   +++   
Sbjct: 121 KSIVVVEDFNLDAPKTKDFLQVLKSLGIDNKKSLVVLGDSNNNVYLSSRNLTQTDVVINS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALE 203
            ++ Y IL  + +VL + +I  +E
Sbjct: 181 ELSTYKILNATSIVLLEGSIAGIE 204


>gi|66472248|ref|NP_001018572.1| 39S ribosomal protein L4, mitochondrial [Danio rerio]
 gi|82192851|sp|Q503X2|RM04_DANRE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
           Short=MRP-L4
 gi|63102139|gb|AAH95145.1| Zgc:110034 [Danio rerio]
          Length = 302

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 3/200 (1%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           D +  GV+ +  D+F++  +  IL  V  WQ   KRI  +  K R+EV   G K + QK 
Sbjct: 82  DSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKR 141

Query: 70  TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
           TGRARH S     +RGGG   GP  P    + LP KVR   L+ ALS K   + + ++D+
Sbjct: 142 TGRARHGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDS 201

Query: 129 LVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           L       +YL    +     ++++I   G +  +N   A  ++  +N++P  G+NV+ +
Sbjct: 202 LEIPTPDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSL 261

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           L+   LVL+  A++ LE + 
Sbjct: 262 LKHESLVLTLEAVKFLEKKL 281


>gi|224510784|pdb|3FIN|F Chain F, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
           And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
           6.4 A Cryo-Em Map. This File Contains The 50s Subunit
          Length = 208

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V +  G  +    +       +    +L  V+RWQ  ++R G + +K R EVAY+G 
Sbjct: 8   QIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K++ QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+     
Sbjct: 63  KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +++++       KTK  +   +   L  +  +     +   + AARN+P +  L  +G+N
Sbjct: 123 LLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEGLN 182

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VYDI+R  +LV+   A E  ++R
Sbjct: 183 VYDIVRTERLVMDLDAWEVFQNR 205


>gi|62287203|sp|Q5SHN9|RL4_THET8 RecName: Full=50S ribosomal protein L4; AltName: Full=L1e
 gi|116668237|pdb|2J01|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
           This File Contains The 50s Subunit From Molecule I.
 gi|116668298|pdb|2J03|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
           This File Contains The 50s Subunit From Molecule Ii.
 gi|119389738|pdb|2HGJ|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
           Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
           This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
           Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
 gi|119389795|pdb|2HGQ|F Chain F, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
           With Translocated And Rotated Shine-Dalgarno Duplex.
           This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
           Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
 gi|119389851|pdb|2HGU|F Chain F, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
           P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
           Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
           Found In Pdb Entry 2hgr.
 gi|157836524|pdb|2V47|F Chain F, Structure Of The Ribosome Recycling Factor Bound To The
           Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
           Trna-Fmet (Part 2 Of 4). This File Contains The 50s
           Subunit For Molecule 1.
 gi|157836580|pdb|2V49|F Chain F, Structure Of The Ribosome Recycling Factor Bound To The
           Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
           Trna-Fmet (Part 4 Of 4). This File Contains The 50s
           Subunit Of Molecule 2.
 gi|211938858|pdb|2JL6|F Chain F, Insights Into Translational Termination From The Structure
           Of Rf2 Bound To The Ribosome (Part 2 Of 4). This File
           Contains The 50s Subunit.
 gi|211938916|pdb|2JL8|F Chain F, Insights Into Translational Termination From The Structure
           Of Rf2 Bound To The Ribosome (Part 4 Of 4). This File
           Contains The 50s Subunit.
 gi|226887439|pdb|2WDI|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In
           Complex With Mrna, Paromomycin, Acylated A-Site Trna,
           Deacylated P-Site Trna, And E-Site Trna. This File
           Contains The 50s Subunit For Molecule I.
 gi|226887471|pdb|2WDJ|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In
           Complex With Mrna, Paromomycin, Acylated A-Site Trna,
           Deacylated P-Site Trna, And E-Site Trna. This File
           Contains The 50s Subunit For Molecule Ii.
 gi|226887528|pdb|2WDL|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In
           Complex With Mrna, Paromomycin, Acylated A- And P-Site
           Trnas, And E-Site Trna.  This File Contains The 50s
           Subunit For Molecule I.
 gi|226887585|pdb|2WDN|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome In
           Complex With Mrna, Paromomycin, Acylated A- And P-Site
           Trnas, And E-Site Trna.  This File Contains The 50s
           Subunit For Molecule Ii.
 gi|237823569|pdb|2WH2|F Chain F, Insights Into Translational Termination From The Structure
           Of Rf2 Bound To The Ribosome
 gi|237823628|pdb|2WH4|F Chain F, Insights Into Translational Termination From The Structure
           Of Rf2 Bound To The Ribosome
 gi|260100015|pdb|3HUX|F Chain F, Structure Of Ef-P Bound To The 70s Ribosome; This File
           Contains The 50s Subunit For Molecule I.
 gi|260100071|pdb|3HUZ|F Chain F, Structure Of Ef-P Bound To The 70s Ribosome; This File
           Contains The 50s Subunit For Molecule Ii.
 gi|261824524|pdb|2WRJ|F Chain F, The Structure Of The Ribosome With Elongation Factor G
           Trapped In The Post-Translocational State (Part 2 Of 4).
 gi|261824586|pdb|2WRL|F Chain F, The Structure Of The Ribosome With Elongation Factor G
           Trapped In The Post-Translocational State. (Part 4 Of
           4).
 gi|261824649|pdb|2WRO|F Chain F, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
           And Trna (Part 2 Of 4).
 gi|261824708|pdb|2WRR|F Chain F, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
           And Trna (Part 4 Of 4).
 gi|281307196|pdb|3KIR|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome
           (Precleavage State; Part 2 Of 4)
 gi|281307254|pdb|3KIT|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome
           (Precleavage State; Part 4 Of 4)
 gi|281307312|pdb|3KIW|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome
           (Postcleavage State; Part 2 Of 4)
 gi|281307370|pdb|3KIY|F Chain F, Structure Of Rele Nuclease Bound To The 70s Ribosome
           (Postcleavage State; Part 4 Of 4)
 gi|288965634|pdb|3KNI|F Chain F, The Structures Of Viomycin Bound To The 70s Ribosome. This
           File Contains The 50s Subunit For Molecule I
 gi|288965666|pdb|3KNK|F Chain F, The Structures Of Viomycin Bound To The 70s Ribosome. This
           File Contains The 50s Subunit For Molecule Ii.
 gi|288965698|pdb|3KNM|F Chain F, The Structures Of Capreomycin Bound To The 70s Ribosome.
           Thi Contains The 50s Subunit For Molecule I.
 gi|288965730|pdb|3KNO|F Chain F, The Structures Of Capreomycin Bound To The 70s Ribosome.
           Thi Contains The 50s Subunit For Molecule Ii
 gi|294979478|pdb|3I8F|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas
           And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
           Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
           The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
           (50s).
 gi|294979558|pdb|3I8I|F Chain F, Elongation Complex Of The 70s Ribosome With Three Trnas
           And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
           Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
           The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
           (30s).
 gi|294979616|pdb|3I9C|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And
           Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
           The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
           A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
           And 3i9e (50s)
 gi|294979670|pdb|3I9E|F Chain F, Initiation Complex Of 70s Ribosome With Two Trnas And
           Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
           The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
           B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
           And 3i9c (50s)
 gi|295982115|pdb|2X9S|F Chain F, Structure Of The 70s Ribosome Bound To Release Factor 2
           And A Substrate Analog Provides Insights Into Catalysis
           Of Peptide Release
 gi|295982174|pdb|2X9U|F Chain F, Structure Of The 70s Ribosome Bound To Release Factor 2
           And A Substrate Analog Provides Insights Into Catalysis
           Of Peptide Release
 gi|307568002|pdb|2XG0|F Chain F, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
           70s Ribosome (Part 2 Of 4)
 gi|307568060|pdb|2XG2|F Chain F, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
           70s Ribosome (Part 4 Of 4)
 gi|309320290|pdb|3OH5|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Chloramphenicol. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320320|pdb|3OH7|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Chloramphenicol. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320392|pdb|3OHJ|F Chain F, Structure Of The Thermus Thermophilus Ribosome Complexed
           With Erythromycin. This File Contains The 50s Subunit Of
           One 70s Ribosome. The Entire Crystal Structure Contains
           Two 70s Ribosomes.
 gi|309320422|pdb|3OHK|F Chain F, Structure Of The Thermus Thermophilus Ribosome Complexed
           With Erythromycin. This File Contains The 50s Subunit Of
           One 70s Ribosome. The Entire Crystal Structure Contains
           Two 70s Ribosomes.
 gi|309320473|pdb|3OHZ|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Azithromycin. This File Contains The 50s
           Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320524|pdb|3OI1|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Azithromycin. This File Contains The 50s
           Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320575|pdb|3OI3|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Telithromycin. This File Contains The 50s
           Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|309320626|pdb|3OI5|F Chain F, Structure Of The Thermus Thermophilus 70s Ribosome
           Complexed With Telithromycin. This File Contains The 50s
           Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|312207714|pdb|2XQE|F Chain F, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
           Ribosome With A Gtp Analog
 gi|313754038|pdb|2XTG|F Chain F, Trna Tranlocation On The 70s Ribosome: The        Pre-
           Translocational Translocation Intermediate Ti(Pre)
 gi|313754096|pdb|2XUX|F Chain F, Trna Tranlocation On The 70s Ribosome: The Post-
           Translocational Translocation Intermediate Ti(Post)
 gi|325533443|pdb|2Y0V|F Chain F, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
           Near-Cognate Codon On The 70s Ribosome
 gi|325533502|pdb|2Y0X|F Chain F, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
           Near-Cognate Codon On The 70s Ribosome
 gi|325533561|pdb|2Y0Z|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
           A Near-Cognate Codon On The 70s Ribosome
 gi|325533620|pdb|2Y11|F Chain F, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
           Cognate Codon On The 70s Ribosome.
 gi|325533679|pdb|2Y13|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
           A Near-Cognate Codon On The 70s Ribosome
 gi|325533738|pdb|2Y15|F Chain F, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
           A Cognate Codon On The 70s Ribosome.
 gi|325533797|pdb|2Y17|F Chain F, Ef-Tu Complex 3
 gi|325533856|pdb|2Y19|F Chain F, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
           Cognate Codon On The 70s Ribosome.
 gi|55773073|dbj|BAD71514.1| 50S ribosomal protein L4 [Thermus thermophilus HB8]
          Length = 210

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V +  G  +    +       +    +L  V+RWQ  ++R G + +K R EVAY+G 
Sbjct: 8   QIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K++ QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+     
Sbjct: 63  KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +++++       KTK  +   +   L  +  +     +   + AARN+P +  L  +G+N
Sbjct: 123 LLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEGLN 182

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VYDI+R  +LV+   A E  ++R
Sbjct: 183 VYDIVRTERLVMDLDAWEVFQNR 205


>gi|195952644|ref|YP_002120934.1| 50S ribosomal protein L4 [Hydrogenobaculum sp. Y04AAS1]
 gi|226730675|sp|B4U745|RL4_HYDS0 RecName: Full=50S ribosomal protein L4
 gi|195932256|gb|ACG56956.1| ribosomal protein L4/L1e [Hydrogenobaculum sp. Y04AAS1]
          Length = 200

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 3/192 (1%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + + +D+F ++P++ IL  V+RWQ  ++R G   +K R+EV  +  K+  QKGTG ARH 
Sbjct: 6   VELRDDVFNVEPKKHILWDVVRWQLAKRRQGTHSTKTRAEVNCSKKKIMPQKGTGNARHG 65

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN--LVSKEC 134
           ++S + F GGG   GP P    + L KK R +AL  ALS K  +N + V+++      + 
Sbjct: 66  ARSANIFVGGGVVHGPTPRDYEYKLSKKYRKIALAMALSTKAKNNSVYVLESLLSSLGKP 125

Query: 135 KTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193
           KTK      +   +    +++     +     + +NIPN  +LPV G+NVYDIL    L+
Sbjct: 126 KTKVAFELLKEKGISDKKVLVVTKDQNDIVSKSFKNIPNTKVLPVVGLNVYDILWADALL 185

Query: 194 LSKSAIEALEDR 205
           + + A+E + +R
Sbjct: 186 IEQGALEKIYER 197


>gi|52840575|ref|YP_094374.1| 50S ribosomal protein L4 [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|81603556|sp|Q5ZYP2|RL4_LEGPH RecName: Full=50S ribosomal protein L4
 gi|52627686|gb|AAU26427.1| 50S ribosomal protein L4 [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 202

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/207 (27%), Positives = 109/207 (52%), Gaps = 5/207 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+E++  +   +    + ++++IFA    +G++ + +       R G S  K RSEV+  
Sbjct: 1   MMEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGG 56

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  +     +R GG  F          L KK+   ALR  +S+   +
Sbjct: 57  GKKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRT 116

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++V+ +      KTK  + +   +++SNA +I   ++  N  L +RN+ + ++  V  
Sbjct: 117 GNLVVVSDFQCDNHKTKDFLKKMNQMEISNA-LIIMSEVGENEYLGSRNLIDYDICDVTT 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           I+   +LR  K+V++++AI+ +E++ +
Sbjct: 176 IDPVSLLRFEKVVVTEAAIKKIEEQLQ 202


>gi|21672769|ref|NP_660836.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009110|sp|Q8K951|RL4_BUCAP RecName: Full=50S ribosomal protein L4
 gi|21623416|gb|AAM68047.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 201

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL ++++      ++SVSE IF     + ++ +V+   S   R G    K R++V+ +G
Sbjct: 1   MELVIKDVP----SLLSVSEIIFGRDFNEALIHQVVVAYSASTRQGTRAQKSRADVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+   S+     
Sbjct: 57  RKPWRQKGTGRARAGSFRSPIWRSGGVTFASKPQSHSQKINKKMYRGALKSIFSELIRQK 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++ +       KT  LV + + + L+N  +I   +++ N  LA+RN+ ++++  V  +
Sbjct: 117 RLIIFEKFSLDLPKTNLLVKKLKEIKLNNV-LILTKEIENNLFLASRNLYSVDVKDVCSM 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    ++++ +A++ +E+  
Sbjct: 176 DPVSLIAFEHIIITVAALKKVEEML 200


>gi|225717040|gb|ACO14366.1| Mitochondrial 39S ribosomal protein L4 [Esox lucius]
          Length = 302

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 3/200 (1%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           D E  G++ +  DIFA+  +  IL  V  WQ   KRI  + +K RSEV   G K + QKG
Sbjct: 82  DSEPLGLVDLHPDIFAVPARVDILHDVEMWQRSFKRISYAHTKVRSEVRGGGRKPWKQKG 141

Query: 70  TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
           +GRARH S     +RGGG + GP  P    + LP K+R   L+ ALS K   + + V+D 
Sbjct: 142 SGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKIRVQGLKIALSSKLAQDYLHVVDT 201

Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           L       +YL+   R      +++I     +   N   A  ++  +N++P  G+NV+ +
Sbjct: 202 LNIPTPDPEYLMDLIRFRYWGESVLIVDACEEFPENILQATESLKTVNVIPAIGLNVHSM 261

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           L+   LVL+  A++ LE++ 
Sbjct: 262 LKHEVLVLTLEAVKFLENKL 281


>gi|15605617|ref|NP_212990.1| 50S ribosomal protein L4 [Aquifex aeolicus VF5]
 gi|6647723|sp|O66432|RL4_AQUAE RecName: Full=50S ribosomal protein L4
 gi|2982768|gb|AAC06394.1| ribosomal protein L04 [Aquifex aeolicus VF5]
          Length = 199

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/195 (36%), Positives = 114/195 (58%), Gaps = 2/195 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G + V +D+F +K ++ +L  V++WQ  ++R G   +K R EVAY+G K+  QKGTG 
Sbjct: 2   KIGDVEVRDDVFNVKVKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGN 61

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS- 131
           ARH  + V+ F GGG A GP P    + LPK+VR L L+ ALSDK  +N I+ +DN+   
Sbjct: 62  ARHGERGVNIFVGGGVAHGPKPRDYEYPLPKRVRKLGLKMALSDKARNNAIIFVDNIDLG 121

Query: 132 KECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
           K+ KTK  +   +        +++   +       + RN+PN+ +L  +G+NVYD+L  +
Sbjct: 122 KKPKTKKAIEFLKNLGVEKEKVLVVIPEKADVLYKSFRNLPNVRVLLPEGLNVYDVLWAN 181

Query: 191 KLVLSKSAIEALEDR 205
           KLV+ K  ++ +  +
Sbjct: 182 KLVIQKDCLDRIYKK 196


>gi|255326843|ref|ZP_05367919.1| ribosomal protein L4/L1 family protein [Rothia mucilaginosa ATCC
           25296]
 gi|283457544|ref|YP_003362127.1| 50S ribosomal protein L4 [Rothia mucilaginosa DY-18]
 gi|255296060|gb|EET75401.1| ribosomal protein L4/L1 family protein [Rothia mucilaginosa ATCC
           25296]
 gi|283133542|dbj|BAI64307.1| ribosomal protein L4 [Rothia mucilaginosa DY-18]
          Length = 205

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 1/182 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +  +IF  +    +L +V+  Q    R G  K+K R EV+  G K + QKGTG AR 
Sbjct: 7   KVDLPAEIFDAQASVPLLHQVVVAQLAAARQGTHKTKNRGEVSGAGRKPFKQKGTGNARQ 66

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS-KEC 134
            S       GGG   GP P       PKK+ + ALR ALSD+   + + V++N +S +  
Sbjct: 67  GSIRAPHMTGGGVVHGPTPRNYAQRTPKKMIAAALRGALSDRARHDRVHVVENFISGETP 126

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
            TK     F A+     +++   + +    L+ARN+ N+++L    +N YD+L    +V 
Sbjct: 127 STKAAKAAFAAITERKNILLVIARAEDVVALSARNLENVHVLYADQLNTYDVLVSDDVVF 186

Query: 195 SK 196
           +K
Sbjct: 187 TK 188


>gi|317401538|gb|EFV82167.1| 50S ribosomal protein L4 [Achromobacter xylosoxidans C54]
          Length = 205

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 3/206 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L + N  G+     S  + IF     + ++ +++       R G    K RSEV ++ 
Sbjct: 1   MDLKLLNDQGQAA-TFSAPDTIFGRDFNEALIHQIVVAFQANARAGNRAQKDRSEVKHST 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R  LS     
Sbjct: 60  KKPWRQKGTGRARAGMTSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGIRSILSQLARE 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + I V+++   +  K              ++++I    +D N  LA RN+P++ ++  + 
Sbjct: 120 DRIAVVESFDLESPK-TKAAAAKLKSLGLDSVLIITDNVDENVYLATRNLPHVAVVEPRY 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +   ++   K++++K AI  LE+  
Sbjct: 179 ADPLSLVHYKKVLITKPAIAQLEEML 204


>gi|254468893|ref|ZP_05082299.1| ribosomal protein L4/L1 family [beta proteobacterium KB13]
 gi|207087703|gb|EDZ64986.1| ribosomal protein L4/L1 family [beta proteobacterium KB13]
          Length = 208

 Score =  162 bits (409), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 101/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++ + +  G+     +  S+ IFA   ++ ++ +++       R+     K R+EV ++
Sbjct: 1   MDIKLVDNKGKASTKKVKASDAIFAADFKESLVHQLVVSYMANARVATRAQKTRAEVKHS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119
             K + QKGTG AR    S   +R GG+AF   P       + KK     ++   S+   
Sbjct: 61  TRKPFRQKGTGNARAGMTSSPIWRSGGRAFPNRPDENYSKKVNKKAYRTGMKSIFSELVR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            + + V++     + KTK      +  ++ N +++   + D N  L++RNIP   ++  +
Sbjct: 121 QDRLTVVEEFKVDKPKTKSFNELIKNFNIENNVLVITNEFDENLYLSSRNIPTALVVEAR 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            I+   ++  SK+++++ A++ +E+ F
Sbjct: 181 YIDPVSLVHFSKVIVTEQALKTIEEMF 207


>gi|330795906|ref|XP_003286011.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum]
 gi|325084009|gb|EGC37447.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum]
          Length = 258

 Score =  162 bits (409), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 109/205 (53%), Gaps = 3/205 (1%)

Query: 3   ELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           E  + + D +   G I +S+DIF+   +  +L R++R+Q  + + G  ++        + 
Sbjct: 47  EFPIIDFDSKSNVGTIQLSKDIFSRPLRIDLLHRMVRYQRAKSQQGTHQALNMERKTSSN 106

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +    Q +GG +AF P      H LPKKVR L L+ ALS K   N
Sbjct: 107 KKPFKQKGTGRARQGTNHAVQMKGGARAFPPTSRSHAHDLPKKVRQLCLKVALSSKLAQN 166

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +++ID       KTK LV++          ++    +  N   ++ N+  I+ LP +G+
Sbjct: 167 KLIIIDEFKLSSHKTKDLVSKL--PQEWGRSLLVDKDISENLNRSSLNVQKIDTLPERGL 224

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVY IL+   LVL++S+IEAL+ R 
Sbjct: 225 NVYSILQNDTLVLTRSSIEALQSRL 249


>gi|308809341|ref|XP_003081980.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri]
 gi|116060447|emb|CAL55783.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri]
          Length = 275

 Score =  161 bits (408), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/216 (33%), Positives = 105/216 (48%), Gaps = 24/216 (11%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
           G  ++   IF    +  +  RV+RWQ  + R G  K+K R EV+ T  K   QKG GRAR
Sbjct: 54  GEATLPGRIFDQPLRVDVAHRVVRWQRAKARAGTHKTKTRGEVSGTTRKARPQKGQGRAR 113

Query: 75  HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134
                  Q RGGG A GPVP    +ALPKKVR + L+ ALS +     I+++D+    E 
Sbjct: 114 VGMLRAPQMRGGGVAHGPVPRSHAYALPKKVRRMGLKVALSARAAEGKIVIVDSFAGMEP 173

Query: 135 KTKYLVTRFRA----------LDLSNALIIDGC--------------QLDRNFQLAARNI 170
           KT+ +                    + LI+DG                 +   ++++RN+
Sbjct: 174 KTRVMKETLERLTGDMGLAAGGKFHSTLIVDGEFEETSEEDDDEETYSPNEIVRISSRNL 233

Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           P++ +LP  G NVY ILR   LV++KS +E L  R 
Sbjct: 234 PHVEVLPQIGANVYSILRRRTLVMTKSGLEQLIRRL 269


>gi|297567283|ref|YP_003686255.1| 50S ribosomal protein L4/L1e [Meiothermus silvanus DSM 9946]
 gi|296851732|gb|ADH64747.1| ribosomal protein L4/L1e [Meiothermus silvanus DSM 9946]
          Length = 211

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 101/208 (48%), Gaps = 8/208 (3%)

Query: 1   MIELSVRNLDGEDKGVIS--VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58
           M+ LSV +  G+    +   +       +    +L  V++WQ  ++R G + +K R  V 
Sbjct: 1   MVTLSVLSAKGQKARDLEATLP------EVNPHVLYEVVKWQMAKRRAGTAATKTRGMVN 54

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
           +T  KMY QK TGRARH       F GGG  FGP P    + LPKKVR L L  AL+D+ 
Sbjct: 55  FTTKKMYSQKHTGRARHGDYGAPIFVGGGTVFGPQPRDYSYTLPKKVRKLGLAMALADRA 114

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
               +++ +       KTK  +       L  +  +     +   + AARN+P +  L  
Sbjct: 115 KDGKLLIAEGFEGVNGKTKEFLAWATGAGLDGSQTVLLVTANELVRRAARNLPWVRTLAP 174

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           +G+NVYDILR   LVL   A EA + R 
Sbjct: 175 EGLNVYDILRQEWLVLDMPAWEAAQARL 202


>gi|145588243|ref|YP_001154840.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189029513|sp|A4SUW2|RL4_POLSQ RecName: Full=50S ribosomal protein L4
 gi|145046649|gb|ABP33276.1| LSU ribosomal protein L4P [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 206

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   +G     +  S ++F  +  + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLQDNGTLGAGVQASPEVFEREYNEALVHQVVVAYQANARSGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R  LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D       KTK L  + +A+ L + LII   Q+  N  LA+RN+  + +   Q 
Sbjct: 121 GRLNVVDQFSLDAPKTKVLADKVKAMGLDSVLIIV-DQVSENLYLASRNLHKVAVCEPQH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   +++  K+++SK+AI  +E+  K
Sbjct: 180 ADPLALVQYKKVLVSKAAIAKIEELLK 206


>gi|254495712|ref|ZP_05108628.1| 50S ribosomal protein L4 [Legionella drancourtii LLAP12]
 gi|254355059|gb|EET13678.1| 50S ribosomal protein L4 [Legionella drancourtii LLAP12]
          Length = 201

 Score =  161 bits (407), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 110/206 (53%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++   +D +    +++++D+FA    +G++ + +       R G S  K RSEV   G
Sbjct: 1   MEIT--TIDNKT--TLTLNQDVFAYAYNEGLIHQAVVTFMNNARSGNSAQKTRSEVRGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F          + KK+   ALR  +S+   + 
Sbjct: 57  RKPWNQKGTGRARAGTIRSPIWRSGGVTFASKKRDYSQKINKKMYKRALRSIISELCRTG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++VI +   +  KTK  V++   L+++NA +I   ++  N    +RN+ + ++  V  +
Sbjct: 117 NLIVISDFQCESKKTKDFVSKMSQLEINNA-LIVMSEVGENEYFGSRNLIDFDICDVATL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +   +LR  K+V++++AI+ +E++ +
Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201


>gi|168037394|ref|XP_001771189.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677569|gb|EDQ64038.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 235

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 5/210 (2%)

Query: 1   MI-ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M   L +   +GE  G + +       +  + ++ R +  +   +R G + +  RSEV  
Sbjct: 9   MAVTLPMLTFEGEAAGEVEMDLRTARPETAKAVVHRGVICEMQNRRRGTASTLTRSEVRG 68

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S       GGG  FGP P      + KK + LA+         
Sbjct: 69  GGRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKRLAI-STALQSAS 127

Query: 120 SNDIMVIDN-LVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
            N ++V D        KTK  ++  +          ++       +  L++RN+  + L+
Sbjct: 128 VNTVVVEDFEDKFTTPKTKEFISALKRWGVKQGENSLLFSVNPSESLVLSSRNVSTVKLI 187

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N+YD+LR  KL+L+KS++E LE  +
Sbjct: 188 TPRNLNLYDVLRADKLILTKSSVEYLEQMY 217


>gi|307718207|ref|YP_003873739.1| hypothetical protein STHERM_c04970 [Spirochaeta thermophila DSM
           6192]
 gi|306531932|gb|ADN01466.1| hypothetical protein STHERM_c04970 [Spirochaeta thermophila DSM
           6192]
 gi|315186330|gb|EFU20091.1| LSU ribosomal protein L4P [Spirochaeta thermophila DSM 6578]
          Length = 208

 Score =  161 bits (406), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 1/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V +L GE    I +++ +FA +   G +   +R +    R+G + +K R+EV+ +G
Sbjct: 1   METQVYSLKGEPIKTIELNDRVFACEVSHGSIYHAIRNELANMRVGTASTKTRAEVSGSG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR   +    + GGG  FGP P    + LP+KV+ LA R  LS K   N
Sbjct: 61  RKPWRQKGTGRARAGERRSPLWVGGGVVFGPKPREYGYKLPRKVKRLAYRSVLSLKLREN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              V+++ V +  KTK +V   +A       +++   +     + A RNIP + +     
Sbjct: 121 AFRVVEDFVVESGKTKDMVKALQALNPEGRRVLLVIGEESALTKRAGRNIPWLLVHTYDK 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           + V+D+    ++++ +SA   L
Sbjct: 181 LRVHDVFYADQVLVQESAAVKL 202


>gi|254433247|ref|ZP_05046755.1| ribosomal protein L4/L1 family [Nitrosococcus oceani AFC27]
 gi|207089580|gb|EDZ66851.1| ribosomal protein L4/L1 family [Nitrosococcus oceani AFC27]
          Length = 191

 Score =  161 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 97/189 (51%), Gaps = 1/189 (0%)

Query: 18  SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77
            +S+ +F     + ++ +V+     + R G    K RSE    G+K + QKGTGRAR  +
Sbjct: 3   QLSDTVFTQHFNEPLIHQVVTAYLAKARAGTHAQKTRSEARGGGAKPFRQKGTGRARAGT 62

Query: 78  KSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK 137
                +RGGG+AF   P      + +K+   A+R  LS+    + + +ID ++  + KT+
Sbjct: 63  IRSPLWRGGGRAFAAKPGDYSQKVNRKMYRAAMRSILSELVRQDRLRMIDKIMLSKPKTR 122

Query: 138 YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197
            L    + +    +++I   + DRN +L+ARNIP + +  V  ++  +++R   ++++  
Sbjct: 123 DLAKLLKPIT-WRSVLIVVAEDDRNLELSARNIPTVAIRNVSRVSPVELIRFDGVLVTGD 181

Query: 198 AIEALEDRF 206
           AI   E+  
Sbjct: 182 AIRCFEESL 190


>gi|121591696|ref|ZP_01678925.1| ribosomal protein L4 [Vibrio cholerae 2740-80]
 gi|121546447|gb|EAX56677.1| ribosomal protein L4 [Vibrio cholerae 2740-80]
          Length = 176

 Score =  161 bits (406), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 53/176 (30%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 31  GILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAF 90
            ++ +V+   +   R G    K RSEV+  G+K + QKGTGRAR  +     +R GG  F
Sbjct: 1   ALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTIRSPIWRTGGVTF 60

Query: 91  GPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150
              P      + KK+   A++  LS+      ++V++N   +  KTK LV + + L+L++
Sbjct: 61  AAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVENFSVEAPKTKALVAKLKELELND 120

Query: 151 ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            LI+ G ++D N  LAARN+  +++  V GI+   ++   K++++ +A++ +E+  
Sbjct: 121 VLIVTG-EVDENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAVKQVEEML 175


>gi|225629697|ref|ZP_03787669.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225591450|gb|EEH12518.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 201

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 2/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E ++ NL  ++ G   ++  IF+ K +  IL  ++RWQ   +R G  K+KG S+V+ T 
Sbjct: 1   MECNLVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLANRRAGTHKTKGISDVSGTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QK T RAR  S    QFRGGG    P      ++L KKVR   L+ ALS K+ +N
Sbjct: 61  AKPYGQKRTARARPGSLRSPQFRGGGIILRPFVRSHTYSLNKKVRKFGLKIALSLKYLNN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++++DNL     KT  +    +    S+  I+     D     AA+N+  ++L+   G+
Sbjct: 121 QVIILDNLNIDVKKTSEMCKCIKNFKFSSFSIVGDYGDD--LLRAAKNLHYVDLIKPIGL 178

Query: 182 NVYDILRCSKLVLSKSAIEALE 203
           NV+DIL    ++L+K  ++ LE
Sbjct: 179 NVFDILNHECVMLTKDTLKHLE 200


>gi|226198215|ref|ZP_03793786.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pakistan 9]
 gi|225929735|gb|EEH25751.1| 50S ribosomal protein L4 [Burkholderia pseudomallei Pakistan 9]
          Length = 192

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           ++ S+ +F     + ++ +V+       R G    K R +V +T  K + QKGTGRAR  
Sbjct: 2   VNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTTKKPWRQKGTGRARAG 61

Query: 77  SKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
             S   +RGGG+ F   P     H + KK+    L    S       + V++++V +  K
Sbjct: 62  MSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLAREGRLSVVEDIVLEAPK 121

Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           TK L  +F+A+   +++++    +D N  LA+RN+P++ ++  +  +   ++   K++++
Sbjct: 122 TKLLADKFKAMG-LDSVLVITDTVDENLYLASRNLPHVAVVEPRYADPLSLIYFKKVLVT 180

Query: 196 KSAIEALEDRF 206
           K+A+  +E+  
Sbjct: 181 KAAVAQIEELL 191


>gi|296105879|ref|YP_003617579.1| large subunit ribosomal protein L4 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295647780|gb|ADG23627.1| large subunit ribosomal protein L4 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 201

 Score =  160 bits (404), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 108/206 (52%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++  +   +    + ++++IFA    +G++ + +       R G S  K RSEV+  G
Sbjct: 1   MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVAFMNNARSGNSAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F          L KK+   ALR  +S+   + 
Sbjct: 57  KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V+ +      KTK  + +   +++SNA +I   ++  N  L +RN+ + ++  V  I
Sbjct: 117 NLVVVSDFQCDNHKTKDFLKKMNQMEISNA-LIIMSEVGENEYLGSRNLIDYDICDVTTI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +   +LR  K+V++++AI+ +E++ +
Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201


>gi|325108616|ref|YP_004269684.1| 50S ribosomal protein L4P [Planctomyces brasiliensis DSM 5305]
 gi|324968884|gb|ADY59662.1| LSU ribosomal protein L4P [Planctomyces brasiliensis DSM 5305]
          Length = 217

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 97/203 (47%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MI + V N  G + G         A    + +L  V+      +R+G   +K R++VA +
Sbjct: 1   MISVPVYNQQGSEVGTYEFDPTELASGVNKQLLHDVVVMYEANRRVGTFATKSRADVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             KMY QKGTG AR   K     RGGG  F   P    + LPKK   LA R A+  KF  
Sbjct: 61  KKKMYRQKGTGNARAGGKRSPIRRGGGHTFAKTPRDFSYRLPKKAIRLATRMAVLSKFQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + I VID++   E KTK +   F       +  ++     D N   +ARN+  + + P  
Sbjct: 121 DQIKVIDDVKFSEPKTKQVTGMFSQLGVEPSKTLLAIDAHDTNVWKSARNVAGLRVTPSV 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
           G+N YD+L    LV++ SA++ L
Sbjct: 181 GLNAYDVLHQRMLVVTTSALDRL 203


>gi|302765881|ref|XP_002966361.1| hypothetical protein SELMODRAFT_67570 [Selaginella moellendorffii]
 gi|302792867|ref|XP_002978199.1| hypothetical protein SELMODRAFT_57647 [Selaginella moellendorffii]
 gi|300154220|gb|EFJ20856.1| hypothetical protein SELMODRAFT_57647 [Selaginella moellendorffii]
 gi|300165781|gb|EFJ32388.1| hypothetical protein SELMODRAFT_67570 [Selaginella moellendorffii]
          Length = 230

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             L + + DGE  G + +   + +    +G++ R +  +   +R G + +K R+EV   G
Sbjct: 5   ATLPLFSFDGECTGSVFLDLKVASAHTARGLVHRGVITELQNRRRGTASTKTRAEVRGGG 64

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S+      GGG  FGP P      + KK + LA+  AL      +
Sbjct: 65  RKPYKQKGTGRARRGSQRTPLRPGGGIVFGPKPKDWGIKINKKEKRLAISTALQSAAVDS 124

Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             +        E KTK+ +        D+S   +I    ++   + ++RNI  + +L  +
Sbjct: 125 IAVEDFEEKFTEPKTKFFLAAMERWGVDVSKHSLIFATNVNDFLEKSSRNIKTVKMLTPR 184

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N+YD+LR  K++ + S I+ L   +
Sbjct: 185 SLNLYDVLRADKILFTSSGIDYLNQSY 211


>gi|317575759|ref|NP_001187653.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus]
 gi|308323607|gb|ADO28939.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus]
          Length = 312

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/200 (34%), Positives = 104/200 (52%), Gaps = 3/200 (1%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           + E  GV+ +  D+F++  +  IL  V  WQ   KRI  +K K R+EV   G K + QKG
Sbjct: 92  ESEPLGVVDLHPDVFSVPVRLDILHAVEVWQRNFKRISNAKVKSRAEVRGGGGKPWKQKG 151

Query: 70  TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
           +GRARH S     +RGGG A GP  P    + LP KVR   L+ AL+ K   + + VID 
Sbjct: 152 SGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKIALTAKLAQDYLHVIDT 211

Query: 129 LVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           L        YL    +     ++++I   G +   N   A  N+  +N++P  G+NV+ +
Sbjct: 212 LEIPTPDPHYLEELLKHRQWGDSVLIVDVGEEFSHNVLQATANLKTVNIIPAIGLNVHSM 271

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           L+   LVL+  A++ LE + 
Sbjct: 272 LKHESLVLTLEAVKFLEKKL 291


>gi|66810850|ref|XP_639132.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4]
 gi|60467762|gb|EAL65778.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4]
          Length = 258

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 4/206 (1%)

Query: 3   ELSVRNLDGE--DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           E+ V N + +      I +S+D+F++  +  +L R++R+Q  + + G  ++     +  T
Sbjct: 50  EVPVLNFNDKLSPIENIQLSKDVFSVPLRVDLLHRMVRYQRAKSQQGTHQALNMGRMERT 109

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K   QKG+G AR  +     FRGG + F P      H LP+KVR L L+ ALS K   
Sbjct: 110 NKKPTRQKGSGNARKGTNHSVHFRGGARTFAPTMRSHAHDLPRKVRKLCLKVALSTKLAQ 169

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N ++V+D    +  KTK L+++          ++   ++      ++ N+  I+ LP  G
Sbjct: 170 NKLVVVDGFNLESHKTKELLSKL--PKDWGRTLLVDSEISDFLNKSSLNVQKIDTLPQLG 227

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVY IL+   LVL+KS++EAL+ R 
Sbjct: 228 LNVYTILQNDTLVLTKSSVEALQARL 253


>gi|54293322|ref|YP_125737.1| 50S ribosomal protein L4 [Legionella pneumophila str. Lens]
 gi|81601549|sp|Q5WZL1|RL4_LEGPL RecName: Full=50S ribosomal protein L4
 gi|53753154|emb|CAH14601.1| 50S ribosomal subunit protein L4 [Legionella pneumophila str. Lens]
          Length = 201

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 106/206 (51%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++  +   +    + ++++IFA    +G++ + +       R G S  K RSEV+  G
Sbjct: 1   MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F          L KK+   ALR  +S+   + 
Sbjct: 57  KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V+ +      KTK  + +   ++  ++ +I   ++  N  L +RN+ + ++  V  I
Sbjct: 117 NLVVVSDFQCDNHKTKDFLKKMNQME-ISSALIIMSEVGENEYLGSRNLIDYDICDVTTI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +   +LR  K+V++++AI+ +E++ +
Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201


>gi|281358744|ref|ZP_06245220.1| ribosomal protein L4/L1e [Victivallis vadensis ATCC BAA-548]
 gi|281314771|gb|EFA98808.1| ribosomal protein L4/L1e [Victivallis vadensis ATCC BAA-548]
          Length = 209

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 1/205 (0%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L + +  G   G   + E +  L+  +  +   +      +R G + +K R EV+  G+
Sbjct: 4   TLDILDCKGARVGEYVIPEGVIELEKGEQAVHDTVVAYLAGQRAGTACTKTRGEVSGGGA 63

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKG GRAR  S     + GGG  FGP P      + KKV  LAL+ ALS++    D
Sbjct: 64  KPFRQKGMGRARAGSSRSPVWVGGGTIFGPRPRSFAKKVNKKVLQLALKRALSERIVEGD 123

Query: 123 IMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++D     + KT+      +     +  ++I   +LD     A  NIPN+ L     +
Sbjct: 124 LVLLDKFELADHKTRNAFAILKNLNVANETVMISLPELDAASVCATGNIPNVVLRKTDTV 183

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVY++LR  KL+ +K A++A   R 
Sbjct: 184 NVYELLRFKKLLFTKDALDAFIQRL 208


>gi|256371216|ref|YP_003109040.1| ribosomal protein L4/L1e [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007800|gb|ACU53367.1| ribosomal protein L4/L1e [Acidimicrobium ferrooxidans DSM 10331]
          Length = 214

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 2/207 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V +  G       +  ++FA  P   +L +V+  +    R G   +K R+EVA  
Sbjct: 1   MASAKVIDATGRTLREEELPGEVFAHAPNIALLHQVVVAEQAGARRGTHSTKTRAEVAGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K Y QKGTG AR  S    Q++GGG   GP P       P+K+   AL  ALSD+  +
Sbjct: 61  GAKPYRQKGTGNARQGSIRAPQYKGGGIVHGPKPRDYSQRTPRKMLRAALAQALSDRASA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--IDGCQLDRNFQLAARNIPNINLLPV 178
             I V+++ V     TK  +   R   L +  +  +     D     + RN+P + +   
Sbjct: 121 GVIYVLEDDVITAPSTKAALACLRGAGLEDRKVLALVAGATDEAVFKSVRNLPTVRVHRA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDR 205
             + V  +L    ++ +++A+  L  R
Sbjct: 181 GLVLVSAVLASDAVLFTRAALAELLGR 207


>gi|307609139|emb|CBW98586.1| 50S ribosomal subunit protein L4 [Legionella pneumophila 130b]
          Length = 201

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 108/206 (52%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++  +   +    + ++++IFA    +G++ + +       R G S  K RSEV+  G
Sbjct: 1   MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F          L KK+   ALR  +S+   + 
Sbjct: 57  KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V+ +      KTK  + +   +++SNA +I   ++  N  L +RN+ + ++  V  I
Sbjct: 117 NLVVVSDFQCDNHKTKDFLNKMNQMEISNA-LIIMSEVGENEYLGSRNLIDYDICDVTTI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +   +LR  K+V++++AI+ +E++ +
Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201


>gi|148361052|ref|YP_001252259.1| 50S ribosomal protein L4 [Legionella pneumophila str. Corby]
 gi|166234680|sp|A5IHR3|RL4_LEGPC RecName: Full=50S ribosomal protein L4
 gi|148282825|gb|ABQ56913.1| 50S ribosomal protein L4 [Legionella pneumophila str. Corby]
          Length = 201

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 108/206 (52%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++  +   +    + ++++IFA    +G++ + +       R G S  K RSEV+  G
Sbjct: 1   MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F          L KK+   ALR  +S+   + 
Sbjct: 57  KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V+ +      KTK  + +   +++SNA +I   ++  N  L +RN+ + ++  V  I
Sbjct: 117 NLVVVSDFQCDNHKTKDFLKKMNQMEISNA-LIIMSEVGENEYLGSRNLIDYDICDVTTI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +   +LR  K+V++++AI+ +E++ +
Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201


>gi|119718124|ref|YP_925089.1| 50S ribosomal protein L4P [Nocardioides sp. JS614]
 gi|119538785|gb|ABL83402.1| LSU ribosomal protein L4P [Nocardioides sp. JS614]
          Length = 259

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 1/187 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           +    +IF ++    ++ +V+  Q    R G   +K R EV   G K Y QKGTGRAR  
Sbjct: 56  VDFPAEIFDVELNVPLIHQVVVAQQAAARQGTHATKTRGEVRGGGRKPYKQKGTGRARQG 115

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECK 135
           S    QF GGG   GP P       PKK++  ALR ALSD+  ++ I V+++ + ++   
Sbjct: 116 STRAPQFAGGGTVHGPQPRSYDQRTPKKMKVAALRGALSDRARNDRIHVVESLITAEAPS 175

Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           T+  +     L   +  ++   + D    L+ RN P ++++ V  +N YD+L    +V +
Sbjct: 176 TRTALAALSTLSERSRFLVVLERTDTVTWLSLRNAPEVHIVAVDQLNTYDVLASDDVVFT 235

Query: 196 KSAIEAL 202
           + A +A 
Sbjct: 236 QGAYDAF 242


>gi|171462880|ref|YP_001796993.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|226730704|sp|B1XSQ2|RL4_POLNS RecName: Full=50S ribosomal protein L4
 gi|171192418|gb|ACB43379.1| ribosomal protein L4/L1e [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 206

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   +G     +  S ++F  +  + ++ +V+       R G    K R +V +T 
Sbjct: 1   MELKLLQDNGILGAGVQASPEVFEREYNEALVHQVVVAYQANARSGNRAQKDREQVKHTT 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGG+ F   P       + KK+    +R  LS     
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFSQKVNKKMYRAGMRSILSQLARE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + VID       KTK L  + +A+ L + LII   Q+  N  LA+RN+  + ++  Q 
Sbjct: 121 GRLNVIDQFNLDAPKTKVLAEKMKAMGLDSVLIIV-DQVSENLYLASRNLHKVAVVEPQH 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
            +   +++  K+++SK+AI  +E+  K
Sbjct: 180 ADPLALVQYKKVLVSKAAITKIEELLK 206


>gi|27904941|ref|NP_778067.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|46397671|sp|Q89A69|RL4_BUCBP RecName: Full=50S ribosomal protein L4
 gi|27904339|gb|AAO27172.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 202

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 4/205 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +R+   ++  V++VS+  F     + ++ +V+   S   R G    K RSEV+ +G
Sbjct: 1   MELVLRD---DEHSVLNVSDITFGRDFNEALVHQVIISYSSSIRQGTHAQKNRSEVSGSG 57

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+   S+     
Sbjct: 58  KKPWRQKGTGRARVGSLRSPLWRSGGVTFAAKPKSFYQKINKKMYRGALKSIFSELIRQK 117

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V      +  KT+ L+ + R + L +  +I     D N +LA+RN+  +++  V  +
Sbjct: 118 RLVVFREFTIEFPKTRLLIDKLRDIKLHDV-LIITKTKDNNLKLASRNLYKVDVQTVNHM 176

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N   ++  + ++++  AI+ +E+  
Sbjct: 177 NPRSLISFNHVLITSKAIQKVEELL 201


>gi|54296366|ref|YP_122735.1| 50S ribosomal protein L4 [Legionella pneumophila str. Paris]
 gi|81602027|sp|Q5X858|RL4_LEGPA RecName: Full=50S ribosomal protein L4
 gi|53750151|emb|CAH11543.1| 50S ribosomal subunit protein L4 [Legionella pneumophila str.
           Paris]
          Length = 201

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/206 (27%), Positives = 108/206 (52%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++  +   +    + ++++IFA    +G++ + +       R G S  K RSEV+  G
Sbjct: 1   MEITTIDTKSK----LKLNKEIFAYTYNEGLVHQAVVTFMNNARSGNSAQKTRSEVSGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F          L KK+   ALR  +S+   + 
Sbjct: 57  KKPWNQKGTGRARAGTIRSPLWRSGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++MV+ +      KTK  + +   +++SNA +I   ++  N  L +RN+ + ++  V  I
Sbjct: 117 NLMVVSDFQCDNHKTKDFLKKMNQMEISNA-LIIMSEVGENEYLGSRNLIDYDICDVTTI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +   +LR  K+V++++AI+ +E++ +
Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201


>gi|326332192|ref|ZP_08198472.1| ribosomal protein L4 [Nocardioidaceae bacterium Broad-1]
 gi|325949898|gb|EGD41958.1| ribosomal protein L4 [Nocardioidaceae bacterium Broad-1]
          Length = 299

 Score =  158 bits (400), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 91/190 (47%), Gaps = 1/190 (0%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
               +    +IF ++    ++ +V+  Q    R G   +K R EV   G K Y QKGTGR
Sbjct: 4   KTVKVDFPAEIFDVELNIPLIHQVVVAQQAAARQGTHATKTRGEVRGGGRKPYKQKGTGR 63

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           AR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  I V +    +
Sbjct: 64  ARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARAGQIHVAE-FAFE 122

Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
              TK  +T  +A+  +   ++   + +    L+ RN P ++LL    +N YD+L    +
Sbjct: 123 APSTKTALTALKAISDAKRFLVVLDRSESAAALSLRNAPEVHLLWADQLNTYDVLVSDDV 182

Query: 193 VLSKSAIEAL 202
           V SK A E  
Sbjct: 183 VFSKPAYEIF 192


>gi|225707434|gb|ACO09563.1| Mitochondrial 39S ribosomal protein L4 [Osmerus mordax]
          Length = 302

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 3/205 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++ + + E  G++ +  D+FAL  +  IL  V  WQ   KRI  + +K RSEV   G K 
Sbjct: 77  TLVSHESEPLGLVDLHPDVFALPARIDILHEVELWQRNYKRISHANTKVRSEVRGGGKKP 136

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKG+GRARH S     +RGGG + GP  P    + +P KVR   L+ ALS K   N +
Sbjct: 137 WNQKGSGRARHGSIRSPIWRGGGVSHGPRGPTSYYYMIPIKVRVQGLKIALSSKLAQNYL 196

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGI 181
            V+D+L       +YLV   R      ++++      L  N   A   +  +N++P  G+
Sbjct: 197 HVVDSLNIPTPDPQYLVDLIRYRYCGESVLLVDATDNLPDNILQATAGLKTVNVIPAIGL 256

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NV+ +L+   LVL+  A++ LE++ 
Sbjct: 257 NVHSMLKHEVLVLTLEAVKFLENKL 281


>gi|94985966|ref|YP_605330.1| 50S ribosomal protein L4 [Deinococcus geothermalis DSM 11300]
 gi|166234661|sp|Q1IX73|RL4_DEIGD RecName: Full=50S ribosomal protein L4
 gi|94556247|gb|ABF46161.1| ribosomal protein L4 [Deinococcus geothermalis DSM 11300]
          Length = 213

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/204 (35%), Positives = 107/204 (52%), Gaps = 7/204 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   +G     + +       +    +L  V+ WQ   +R G + +K R+EV+ +
Sbjct: 1   MAQINVIGQNGGRSIDLDLP------EVNPHVLHEVVTWQLAGRRRGTASTKTRAEVSRS 54

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH  +SV  F GGG AFGP P    + LP+KVR L L  AL+D+   
Sbjct: 55  GKKMYSQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYSYTLPRKVRQLGLAMALADRQQQ 114

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  +D       KTK  V+  +   L  +  +     D   + AARN+    +LPV G
Sbjct: 115 GKLTAVDGFGLD-GKTKSFVSWAKENGLDGSERVLIVTDDELTRRAARNVAWATVLPVAG 173

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           +NVYDILR  +LV+   A+E  ++
Sbjct: 174 LNVYDILRHERLVIDAVALEPAQE 197


>gi|118595334|ref|ZP_01552681.1| 50S ribosomal protein L4 [Methylophilales bacterium HTCC2181]
 gi|118441112|gb|EAV47739.1| 50S ribosomal protein L4 [Methylophilales bacterium HTCC2181]
          Length = 208

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +E  + +  G+  K     S+DIFA +  + ++ +++       R      K R+EV ++
Sbjct: 1   MEFKILDKSGKLSKKTHKASDDIFASEFNESLIHQLVTSYMSNGRSVTRAQKTRAEVKHS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFC 119
             K + QKGTG AR    S   +RGGG+AF   P         KK   +A++  LS+   
Sbjct: 61  TRKPFRQKGTGNARAGMTSSPIWRGGGRAFPNRPDENYTQKFNKKAYRVAMKSILSELVR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + +I+       KTK  V + + L ++  +++     D N  L++RN+ N  ++  +
Sbjct: 121 QERLSIIEEFKIDSPKTKQFVEKIKTLGITENVLVLIDSFDENLYLSSRNLTNALVVEAK 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             +   ++  SK++ +  A++ LE+ F
Sbjct: 181 YADPVSLVHFSKVIATTEAVKQLEEMF 207


>gi|21230365|ref|NP_636282.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769641|ref|YP_244403.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992853|ref|YP_001904863.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris
           str. B100]
 gi|46577276|sp|Q8PC48|RL4_XANCP RecName: Full=50S ribosomal protein L4
 gi|81304404|sp|Q4URE0|RL4_XANC8 RecName: Full=50S ribosomal protein L4
 gi|226731444|sp|B0RU81|RL4_XANCB RecName: Full=50S ribosomal protein L4
 gi|21111921|gb|AAM40206.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574973|gb|AAY50383.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734613|emb|CAP52823.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. campestris]
          Length = 201

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 99/205 (48%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVS+ +F  +  + ++ +V+       R G    K RSEVA   
Sbjct: 1   MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +M++D+   +  KTK L+ + + +D+    +I   +   +  L+ARN+P + +  VQG+
Sbjct: 116 RLMIVDSFDIEATKTKGLIEKLKGMDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200


>gi|168702385|ref|ZP_02734662.1| 50S ribosomal protein L4 [Gemmata obscuriglobus UQM 2246]
          Length = 235

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 19/219 (8%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V N  G + G + ++   F  K  + ++  V+      +R G   +  R +VA +  
Sbjct: 9   KVPVVNRSGAEVGTVDINPSEFGGKISRQLMHDVVLMYLANQRAGTHHTLRRGQVAGSTK 68

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K++ QKGTG AR  +K  ++ RGGG A GP P    + LPKK    A R A+  KF    
Sbjct: 69  KLFRQKGTGNARAGTKRTNKRRGGGTAKGPKPRDYEYHLPKKSVKAATRMAILSKFLDGQ 128

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNAL-------------------IIDGCQLDRNF 163
           ++++D       KTK +V   +A+ +                       +I   +LD N 
Sbjct: 129 VVILDEFALAAPKTKEVVGVLKAIKIGKKKKKTEQGEKEIELTLADTTVLIGTEKLDPNV 188

Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
             +ARNI  + +LP    N Y +L+  +LVL+K+A EAL
Sbjct: 189 YKSARNIEGVKVLPAAEFNCYTVLKQKRLVLTKAAFEAL 227


>gi|166710832|ref|ZP_02242039.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 201

 Score =  157 bits (398), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 97/205 (47%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVSE +F  +  + ++ +V+       R G    K RSEVA   
Sbjct: 1   MELVITGSNNK----VSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +M++D    +  KTK L+ + + L +    +I   +   +  L+ARN+P + +  VQG+
Sbjct: 116 RLMIVDAFDLEATKTKDLIEKLKGLHVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200


>gi|84625043|ref|YP_452415.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|122879274|ref|YP_202221.6| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188575491|ref|YP_001912420.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|109893661|sp|Q2NZY6|RL4_XANOM RecName: Full=50S ribosomal protein L4
 gi|226731445|sp|B2SQR1|RL4_XANOP RecName: Full=50S ribosomal protein L4
 gi|84368983|dbj|BAE70141.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519943|gb|ACD57888.1| ribosomal protein L4/L1 family [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 201

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVSE +F  +  + ++ +V+       R G    K RSEVA   
Sbjct: 1   MELVITGSNNK----VSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +M++D    +  KTK L+ + + LD+    +I   +   +  L+ARN+P + +  VQG+
Sbjct: 116 RLMIVDAFDLEATKTKDLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200


>gi|114764143|ref|ZP_01443381.1| 50S ribosomal protein L4 [Pelagibaca bermudensis HTCC2601]
 gi|114543295|gb|EAU46311.1| 50S ribosomal protein L4 [Roseovarius sp. HTCC2601]
          Length = 177

 Score =  157 bits (397), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/176 (43%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V  LDG   G + ++++IF L+P+  IL RV+RWQ  + + G  K K RSEV+Y+ 
Sbjct: 1   MKLDVIKLDGGAAGEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+Y QKGTG ARH S+    FR GG   GP P    H LPKKVR L L+ ALS K  + 
Sbjct: 61  KKIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRQLGLKLALSAKAKAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
            +++I+N  +   KTK L ++ + L    AL+IDG +++ NF  AA NI  +++LP
Sbjct: 121 SLVIIENADAD-GKTKTLASQVKNLGWKRALVIDGAEVNENFARAAANIDGLDVLP 175


>gi|289665138|ref|ZP_06486719.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669345|ref|ZP_06490420.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 201

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVS+ +F  +  + ++ +V+       R G    K RSEVA   
Sbjct: 1   MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +M++D    +  KTK L+ + + LD+    +I   +   +  L+ARN+P + +  VQG+
Sbjct: 116 RLMIVDAFDLEATKTKGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200


>gi|21241738|ref|NP_641320.1| 50S ribosomal protein L4 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|78046556|ref|YP_362731.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|294627844|ref|ZP_06706423.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294663997|ref|ZP_06729411.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325925386|ref|ZP_08186788.1| LSU ribosomal protein L4P [Xanthomonas perforans 91-118]
 gi|46577277|sp|Q8PNS3|RL4_XANAC RecName: Full=50S ribosomal protein L4
 gi|109893660|sp|Q3BWY2|RL4_XANC5 RecName: Full=50S ribosomal protein L4
 gi|21107109|gb|AAM35856.1| 50S ribosomal protein L4 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|78034986|emb|CAJ22631.1| 50S ribosomal protein L4 [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|292597758|gb|EFF41916.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606226|gb|EFF49463.1| 50S ribosomal protein L4 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325544264|gb|EGD15645.1| LSU ribosomal protein L4P [Xanthomonas perforans 91-118]
          Length = 201

 Score =  157 bits (397), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVS+ +F  +  + ++ +V+       R G    K RSEVA   
Sbjct: 1   MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +M++D    +  KTK L+ + + L++    +I   +   +  L+ARN+P + +  VQG+
Sbjct: 116 RLMIVDAFDLEATKTKGLIEKLKGLEVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVALVGADTVVITADAVKKVEEWL 200


>gi|270157909|ref|ZP_06186566.1| ribosomal protein L4 [Legionella longbeachae D-4968]
 gi|289163831|ref|YP_003453969.1| 50S ribosomal subunit protein L4 [Legionella longbeachae NSW150]
 gi|269989934|gb|EEZ96188.1| ribosomal protein L4 [Legionella longbeachae D-4968]
 gi|288857004|emb|CBJ10818.1| 50S ribosomal subunit protein L4 [Legionella longbeachae NSW150]
          Length = 201

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 108/206 (52%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E++  +     K  +++++D+FA    +G++ + +       R G S  K R+EV   G
Sbjct: 1   MEITTID----TKSTLALNQDVFAYGYNEGLIHQAVVAYMNNARSGNSAQKTRAEVRGGG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F          L KK+   ALR  +S+   + 
Sbjct: 57  KKPWNQKGTGRARAGTIRSPIWRTGGVTFASKKRDYSQKLNKKMYKRALRSIISELCRTG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +++V+ +   +  KTK  + +   L+++NA +I   ++  N    +RN+ + ++  V  +
Sbjct: 117 NLLVVSDFQCESKKTKDFINKMNQLNVTNA-LIIMTEVGENEYFGSRNLIDYDICDVTTV 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +   +LR  K+V++++AI+ +E++ +
Sbjct: 176 DPVSLLRFEKVVVTEAAIKKIEEQLQ 201


>gi|56966348|pdb|1VOR|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
           Coli In Complex With Protein Y. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Five 70s Ribosomes And Is Described
           In Remark 400.
 gi|56966401|pdb|1VOU|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
           Coli In Complex With Protein Y. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Five 70s Ribosomes And Is Described
           In Remark 400.
 gi|56966454|pdb|1VOW|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
           Coli In Complex With Protein Y. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Five 70s Ribosomes And Is Described
           In Remark 400.
 gi|56966507|pdb|1VOY|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
           Coli In Complex With Protein Y. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Five 70s Ribosomes And Is Described
           In Remark 400.
 gi|56966560|pdb|1VP0|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
           Coli In Complex With Protein Y. This File Contains The
           50s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Five 70s Ribosomes And Is Described
           In Remark 400
          Length = 198

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 6/203 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
            +++V   +G     + +       +   G+L  V+ WQ   +R G + ++ R++V+ TG
Sbjct: 2   AQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH  +SV  F GGG AFGP P    + LP++VR L L  A++ +    
Sbjct: 56  RKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++ +D     + KTK  ++  +   L     +     D N + AARN+  +++LPV G+
Sbjct: 116 KLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGV 175

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           NVYDILR  +LV+  +A+E +E+
Sbjct: 176 NVYDILRHDRLVIDAAALEIVEE 198


>gi|34811556|pdb|1PNU|C Chain C, Crystal Structure Of A Streptomycin Dependent Ribosome
           From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
           File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
           Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
           Trna Are In The Pdb File 1pns.
 gi|34811609|pdb|1PNY|C Chain C, Crystal Structure Of The Wild Type Ribosome From E. Coli,
           50s Subunit Of 70s Ribosome. This File, 1pny, Contains
           Only Molecules Of The 50s Ribosomal Subunit. The 30s
           Subunit Is In The Pdb File 1pnx
          Length = 197

 Score =  157 bits (397), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 6/203 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
            +++V   +G     + +       +   G+L  V+ WQ   +R G + ++ R++V+ TG
Sbjct: 1   AQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTG 54

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH  +SV  F GGG AFGP P    + LP++VR L L  A++ +    
Sbjct: 55  RKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGG 114

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++ +D     + KTK  ++  +   L     +     D N + AARN+  +++LPV G+
Sbjct: 115 KLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGV 174

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           NVYDILR  +LV+  +A+E +E+
Sbjct: 175 NVYDILRHDRLVIDAAALEIVEE 197


>gi|91763161|ref|ZP_01265125.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717574|gb|EAS84225.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1002]
          Length = 207

 Score =  157 bits (396), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 115/207 (55%), Gaps = 3/207 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++   NLDG+    I V + IF+ K  + ++  VL   +   +   +K+K ++E+  + 
Sbjct: 1   MKIDKLNLDGKK-DSIEVLDKIFSAKINKRLVDNVLYKTNANYKGRHAKTKQQNEITGST 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFC 119
           SK+Y QKGTG ARH+S+    F GGG A GP   +      L K  + L++   +++K  
Sbjct: 60  SKIYAQKGTGGARHASRKAPIFVGGGVAHGPKGELAYKKRKLNKSEKKLSIASLITEKNK 119

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            N++++  +  ++  KTK + +  +  +++N+LII         + + RNIPN+ +  + 
Sbjct: 120 FNNLIIFSDFGNEIKKTKEMHSIIKKFEITNSLIILDKSSKEKIEKSVRNIPNVKVTDIN 179

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + +DI++  K+V ++S+I+ LE R+
Sbjct: 180 HFSAFDIIKFKKVVFTESSIKELEKRY 206


>gi|325972660|ref|YP_004248851.1| ribosomal protein L4/L1e [Spirochaeta sp. Buddy]
 gi|324027898|gb|ADY14657.1| ribosomal protein L4/L1e [Spirochaeta sp. Buddy]
          Length = 209

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 101/206 (49%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V ++DG +   I +++ +F  +   G +   +  +   +R+G + +K R+EV Y+ 
Sbjct: 1   METKVFSIDGSEVRSIELNDQVFNREVSDGSIYYAVNNELANRRVGTACTKTRAEVHYSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR   K    + GGG  FGP P    + LPKK++ LA++  LS      
Sbjct: 61  VKPYKQKGTGNARAGDKKSPVWVGGGTIFGPRPRDYSYTLPKKMKRLAMKSLLSLGVKEE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNIPNINLLPVQG 180
            ++V+++      KTK L    +         I      D   + AA+NIP + +L    
Sbjct: 121 RLVVVEDFSIDSGKTKDLDLIIKNFVKDETRTILILKDDDVMVRRAAKNIPYLRVLSYNR 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++  ++L   KL++ + A + L D +
Sbjct: 181 LSAKELLYGRKLLVLEGAAKNLNDFY 206


>gi|285017321|ref|YP_003375032.1| 50s ribosomal protein l4 [Xanthomonas albilineans GPE PC73]
 gi|283472539|emb|CBA15044.1| probable 50s ribosomal protein l4 [Xanthomonas albilineans]
          Length = 201

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVS+ +F     + ++ +V+       R G    K RSEV    
Sbjct: 1   MELVITGSNNK----VSVSDAVFGRDFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVN-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V+D    +  KTK L+ + + LD+    +I   +   +  L+ARNIP + +  VQG+
Sbjct: 116 RLKVVDAFDLEASKTKGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNIPYVEVRDVQGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVSLVGADTVVITADAVKKVEEWL 200


>gi|307214236|gb|EFN89342.1| 39S ribosomal protein L4, mitochondrial [Harpegnathos saltator]
          Length = 285

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            +  +  G +++   IFA  P+  I+ + +RWQ   + +  + +K R+EV   G K + Q
Sbjct: 63  TIKEKKLGFVTLHPHIFAATPRIDIIHQNVRWQKMYRWVCYAHTKTRTEVRGGGRKPWPQ 122

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KGTGRARH S     +RGGG+A GP  P    + LP   R   L   LS K   +D+ +I
Sbjct: 123 KGTGRARHGSIRSPLWRGGGRAHGPRSPTPHFYMLPFFTRVAGLTSMLSVKLAQDDLHII 182

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGINVY 184
           +NL     +  Y+       +   +++I      + +N  LA   I +INL+PV G+NVY
Sbjct: 183 NNLEIPTSECSYIEQLVEERNWGPSVLIVDSYDIMPKNITLATDEIKHINLMPVYGLNVY 242

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+ + LVL++ A   +E++ 
Sbjct: 243 SMLKHNTLVLTEQAARLIEEKL 264


>gi|71083803|ref|YP_266523.1| 50S ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1062]
 gi|109893617|sp|Q4FLL9|RL4_PELUB RecName: Full=50S ribosomal protein L4
 gi|71062916|gb|AAZ21919.1| ribosomal protein L4 [Candidatus Pelagibacter ubique HTCC1062]
          Length = 207

 Score =  157 bits (396), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/207 (28%), Positives = 115/207 (55%), Gaps = 3/207 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++   NLDG+    I V + IF+ K  + ++  VL   +   +   +K+K ++E+  + 
Sbjct: 1   MKIDKLNLDGKK-DSIEVLDKIFSAKINKRLVDNVLYKTNANYKGRHAKTKQQNEITGST 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFC 119
           SK+Y QKGTG ARH+S+    F GGG A GP   +      L K  + L++   +++K  
Sbjct: 60  SKIYAQKGTGGARHASRKAPIFVGGGVAHGPKGELAYKKRKLNKSEKKLSIASLITEKNK 119

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            N++++  +  ++  KTK + +  +  +++N+LII         + + RNIPN+ +  + 
Sbjct: 120 LNNLIIFSDFGNEIKKTKEMHSIIKKFEITNSLIILDKSSKEKIEKSVRNIPNVKVTDIN 179

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + +DI++  K+V ++S+I+ LE R+
Sbjct: 180 HFSAFDIIKFKKVVFTESSIKELEKRY 206


>gi|254442040|ref|ZP_05055516.1| ribosomal protein L4/L1 family [Verrucomicrobiae bacterium DG1235]
 gi|198256348|gb|EDY80656.1| ribosomal protein L4/L1 family [Verrucomicrobiae bacterium DG1235]
          Length = 211

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 1/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L +   DG + G   V    +F        +  V+  Q+   R G + +K R EV   
Sbjct: 1   MKLKLFKNDGSEGGETEVDGLPVFEGDKGLQAVKEVVVAQAANGRQGSASTKTRGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     + GGG  FGP P      + KKV++LA   AL D+   
Sbjct: 61  GKKPWRQKGTGRARAGSNRSPIWVGGGIVFGPRPRDYSKKINKKVKTLAFGRALVDRISD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I+VID+L     KTK      R +     +++   +L     LA RN+  ++L     
Sbjct: 121 ESIVVIDSLDIAPAKTKVAEGLVRGIAPKGKVLVIDKELSDTSVLALRNLVGVDLEEASL 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++V D+ +   +++++S ++ L +R K
Sbjct: 181 VSVTDLCQFKTIIVTRSGLDVLVERAK 207


>gi|325981806|ref|YP_004294208.1| 50S ribosomal protein L4/L1e [Nitrosomonas sp. AL212]
 gi|325531325|gb|ADZ26046.1| ribosomal protein L4/L1e [Nitrosomonas sp. AL212]
          Length = 206

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ +   + +    I VS+++F     + ++ +V+       R      KGRS++A + 
Sbjct: 1   MKIELIGNEDQKTASIIVSDELFMRNYNEALVHQVVTSYLSNARTATRAQKGRSDIAKST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR    S   +RGGGK F           L KK+    +   LS     
Sbjct: 61  RKPWRQKGTGRARAGMASSPIWRGGGKIFPNSSGENFRKKLNKKMYRAGISSILSQLIRD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           N + VI++      KTK L+ +   L LSN +II   ++D N  L++ NIPN+ ++ V  
Sbjct: 121 NRLHVIESFCVDSYKTKALLMKLENLGLSNVMII-TDEIDNNLYLSSCNIPNVAVVEVNN 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           I+   +L+  K +++   ++ +E+  
Sbjct: 180 IDPISLLKFKKTLVTSDGLKKIEELL 205


>gi|168004892|ref|XP_001755145.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693738|gb|EDQ80089.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 240

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 3/209 (1%)

Query: 1   MI-ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M   L V  L+G   G + +       +  + ++ R L  +   +R G + +  RSEV  
Sbjct: 1   MAVTLPVLTLEGGAAGEVEMDLRTARPETAKSVVHRGLICEMQNRRRGTASTLTRSEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QKGTGRAR  S       GGG  FGP P      + KK + LA+  AL     
Sbjct: 61  GGRKPYKQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKQLAISTALQSASA 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
           +  ++          KTK  +              ++       +  L++RN+    L+ 
Sbjct: 121 NTVVVEDFEEKFTAPKTKEFIAALMRWGVKPGENSLLFSMNPSDSLVLSSRNVSTCKLMT 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
            + +N+YD+LR  KL+L+KSA+E LE ++
Sbjct: 181 PRSLNLYDVLRADKLILTKSAVEYLEQQY 209


>gi|325916488|ref|ZP_08178757.1| LSU ribosomal protein L4P [Xanthomonas vesicatoria ATCC 35937]
 gi|325537277|gb|EGD09004.1| LSU ribosomal protein L4P [Xanthomonas vesicatoria ATCC 35937]
          Length = 203

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVS+ +F  +  + ++ +V+       R G    K RSEVA   
Sbjct: 3   MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GT 57

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+    S+     
Sbjct: 58  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 117

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +M++D    +  KT+ L+ + + LD+    +I   +   +  L+ARN+P + +  VQG+
Sbjct: 118 RLMIVDAFDVETTKTQGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 177

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 178 DPVALVGADTVVITADAVKKVEEWL 202


>gi|325921482|ref|ZP_08183337.1| LSU ribosomal protein L4P [Xanthomonas gardneri ATCC 19865]
 gi|325548029|gb|EGD19028.1| LSU ribosomal protein L4P [Xanthomonas gardneri ATCC 19865]
          Length = 203

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 98/205 (47%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVS+ +F  +  + ++ +V+       R G    K RSEVA   
Sbjct: 3   MELVITGSNNK----VSVSDAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GT 57

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+    S+     
Sbjct: 58  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQG 117

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +M+++    +  KT+ L+ + + LD+    +I   +   +  L+ARN+P + +  VQG+
Sbjct: 118 RLMIVEAFDVEATKTQGLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 177

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 178 DPVALVGADTVVITADAVKKIEEWL 202


>gi|168046642|ref|XP_001775782.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672934|gb|EDQ59465.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 230

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 2/205 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L     +GE  G + +       +  + ++ R +  +   +R G + +  RSEV   G K
Sbjct: 8   LPKLTFEGEAAGEVEMDLRTARPETAKAVVHRGVICEMQNRRRGTASTLTRSEVRGGGRK 67

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QKGTGRAR  S       GGG  FGP P      + KK + LA+  AL     +  +
Sbjct: 68  PYKQKGTGRARQGSIRTPLRPGGGVVFGPKPKDWSIKINKKEKRLAISTALQSAGANTVV 127

Query: 124 MVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +          KTK  ++  +          ++       +  L++RN+    L+  + +
Sbjct: 128 VEDFEEKFSTPKTKDFMSALKRWGVKQGENSLLFSMNPSESLVLSSRNVNTFKLISPRNL 187

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N+YD+LR  KL+L++S+++ LE ++
Sbjct: 188 NLYDVLRADKLILTESSVKYLEQQY 212


>gi|153872676|ref|ZP_02001497.1| ribosomal protein L4/L1e [Beggiatoa sp. PS]
 gi|152070857|gb|EDN68502.1| ribosomal protein L4/L1e [Beggiatoa sp. PS]
          Length = 218

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 14/218 (6%)

Query: 2   IELSVRNLDGEDKG---VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58
           +EL++ NL  E  G   VISVS+ +F     + ++ + +              K R++V 
Sbjct: 1   MELTLTNLPDETSGLGSVISVSDRVFTAPFNEPLIHQAVTAYLLGSYQSQKSVKNRAQVR 60

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
            + +K + QKGTGRAR  S     +RGGG  F   P      L +K+   ALR  LS+  
Sbjct: 61  GSTAKPWRQKGTGRARAGSVKSPLWRGGGVTFAH-PSSHAVKLNRKMYQGALRSILSELI 119

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR----------NFQLAAR 168
               ++V +    +  KT  L     AL+L   LI+   +                 A+ 
Sbjct: 120 RQERLLVTERFFLEAPKTSVLKKTLNALNLDKVLIVLEGRTSSVNGEIAPEVMAVFRASD 179

Query: 169 NIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           N+P + +L    I+   ++R  K++ + +A++ LE+R 
Sbjct: 180 NLPKVLVLEASKIDPVSLVRFDKVIFTTAALKQLEERL 217


>gi|254456203|ref|ZP_05069632.1| ribosomal protein L4/L1 family [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083205|gb|EDZ60631.1| ribosomal protein L4/L1 family [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 207

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/207 (30%), Positives = 117/207 (56%), Gaps = 3/207 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L   ++DG+    I V + IF+ K    +++ VL   +   +   +K+K ++EV+   
Sbjct: 1   MKLEKFSIDGKK-DTIEVLDKIFSAKINSKLVSSVLYKTNANYKGRHAKTKQQNEVSGPT 59

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFC 119
           SK+Y QKGTG ARH+S+    F GGG A GP   +      L K  + L++   +++K  
Sbjct: 60  SKIYAQKGTGGARHASRKAPIFVGGGIAHGPKGELAYKKRKLNKNEKKLSVASLITEKNK 119

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             +++++++  S+  KTK +    + L++SN+LII         + +ARNIPN+ +  V 
Sbjct: 120 HKNLLILNDFSSEIKKTKEMNAIIQKLEISNSLIILDKSSKEKIEKSARNIPNVKVTDVN 179

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
             + YDI++  K+V ++S+++ LE R+
Sbjct: 180 HFSSYDIIKFKKVVFTESSVKELEKRY 206


>gi|260787918|ref|XP_002588998.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae]
 gi|229274171|gb|EEN45009.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae]
          Length = 264

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           ++  E  G++ +  D+FA  P+  IL R +RWQ   ++I    ++ R+E+   G K + Q
Sbjct: 35  DIKDEKLGMVELHPDVFATHPRMDILHRCVRWQYLYRKINYDFARTRAEMRGGGRKPWPQ 94

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KGTGRARH S     +  GGK  GP  P      LP K R+L L+ AL+ K    D+ ++
Sbjct: 95  KGTGRARHGSIRSPLWHMGGKCHGPRGPYSYYQYLPLKYRALGLKVALTVKHSQGDLHIV 154

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGINVY 184
           D L       +YL    R  +   ++++     ++  N   A+  +  IN++P+ G+NVY
Sbjct: 155 DTLEIPTTDPEYLEDLVRYRNWGKSVLLVDMNEEISENVCEASAQLNTINVMPLVGLNVY 214

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+   ++ LE++ 
Sbjct: 215 SMLKHDTLVLTLPCVQKLENKL 236


>gi|322796484|gb|EFZ18991.1| hypothetical protein SINV_11616 [Solenopsis invicta]
          Length = 287

 Score =  156 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 3/205 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++  ++ +  G++++   I+A  P+  I+ + +RWQ   + +  + +K R+EV   G K 
Sbjct: 62  NLNTIEEKKLGLVTLHPHIYATAPRIDIVHQNVRWQKMYRWVSYAHTKTRAEVRGGGRKP 121

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKGTGRARH S     ++GGG A GP  P    + LP   R   L   LS K   +D+
Sbjct: 122 WPQKGTGRARHGSIRSPLWKGGGIAHGPRSPTPHFYMLPFYTRVAGLTSMLSIKLAQDDL 181

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGI 181
            +ID L     +  Y+       +   +++       +  N  LA   I ++NL+PV G+
Sbjct: 182 HIIDELEIPTSEPSYVEQLVEERNWGPSVLFVDSYDIMPPNITLATDKIKHVNLMPVYGL 241

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVY +L+ + LVL++ A   +E++ 
Sbjct: 242 NVYSMLKHNTLVLTEKAARLIEEKL 266


>gi|313680514|ref|YP_004058253.1| LSU ribosomal protein l4p [Oceanithermus profundus DSM 14977]
 gi|313153229|gb|ADR37080.1| LSU ribosomal protein L4P [Oceanithermus profundus DSM 14977]
          Length = 208

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 6/192 (3%)

Query: 1   MIELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M ++ V    G+     + + E     +    +L  V+RWQ   +R G + +K R EV+Y
Sbjct: 1   MYKVPVIPAKGKATSRELPLPE-----EVNPHVLYEVVRWQLASRRRGTASTKTRGEVSY 55

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           +  K++ QKG GRARH S+  + F GGG  FGP P    + LP+KVR   L  AL+D+  
Sbjct: 56  STRKLFPQKGLGRARHGSRGANIFVGGGVVFGPRPRDYGYTLPRKVRRAGLAMALADRAR 115

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +++++     E KTK  V       L  +  +     D N + AARN+P +  L  +
Sbjct: 116 EEKLLIVEAFAGVEGKTKQFVEWASKHGLDGSERVTLVTADENVRRAARNLPWVVTLSPE 175

Query: 180 GINVYDILRCSK 191
           GINVYDILR  +
Sbjct: 176 GINVYDILRTDR 187


>gi|260807182|ref|XP_002598388.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae]
 gi|229283660|gb|EEN54400.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae]
          Length = 264

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 3/202 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
           ++  E  G++ +  D+FA  P+  IL R +RWQ   ++I    ++ R+E+   G K + Q
Sbjct: 35  DIKDEKLGMVELHPDVFATHPRMDILHRCVRWQYLYRKINYDFARTRAEMRGGGRKPWPQ 94

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KGTGRARH S     +  GGK  GP  P      LP K R+L L+ AL+ K    D+ ++
Sbjct: 95  KGTGRARHGSIRSPLWHMGGKCHGPRGPYSYYQYLPLKYRALGLKVALTVKHSQGDLHIV 154

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQGINVY 184
           D L       +YL    R  +   ++++     D   N   A+  +  IN++P+ G+NVY
Sbjct: 155 DRLEIPTTDPEYLEDLVRYRNWGKSVLLVDMNEDIAENVCEASAQLNTINVMPLVGLNVY 214

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+   ++ LE++ 
Sbjct: 215 SMLKHDTLVLTLPCVQKLENKL 236


>gi|6919958|sp|O80361|RK4_TOBAC RecName: Full=50S ribosomal protein L4, chloroplastic; AltName:
           Full=CL4; AltName: Full=R-protein L4; Flags: Precursor
 gi|3298439|dbj|BAA31510.1| chloroplast ribosomal protein L4 [Nicotiana tabacum]
          Length = 282

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             + + + DG + G  +++     L   + ++ R L      +R G + +  RSEV   G
Sbjct: 46  ATIPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGG 105

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QK TGRAR  S       GGG  FGP P      + KK + LA+  ALS    + 
Sbjct: 106 IKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENT 165

Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            ++   N   ++ KTK  +   R    D     +     +  N  L++RNI  + +L  +
Sbjct: 166 IVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPR 225

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N++DIL   KLVL+KSA++ L +R+
Sbjct: 226 TLNLFDILDSEKLVLTKSAVDFLNERY 252


>gi|325282641|ref|YP_004255182.1| ribosomal protein L4/L1e [Deinococcus proteolyticus MRP]
 gi|324314450|gb|ADY25565.1| ribosomal protein L4/L1e [Deinococcus proteolyticus MRP]
          Length = 204

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 7/205 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V   +G     + +       +    +L  V+ WQ   +R G + +K R++VA T
Sbjct: 1   MAQIQVVGKNGGRSIELELP------EVNPHVLHEVVTWQLAGRRRGTASTKTRAQVART 54

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KM+ QKGTG ARH  ++V  F GGG AFGP P    + LP+KVR L L  AL+D+  +
Sbjct: 55  GRKMFSQKGTGNARHGDRTVPTFVGGGVAFGPKPRDYSYTLPRKVRQLGLAMALADRQAA 114

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             +  +D       KTK  V   +   +  +  +     D N   +ARN+    +LPV G
Sbjct: 115 GMLTAVDGYDLD-GKTKSFVQWAKDNGMDGSEKVLIVTDDANVLRSARNVSWATVLPVAG 173

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +N YDILR  +LV+   A+E  ++ 
Sbjct: 174 LNTYDILRHDRLVIDAVALEPAQEM 198


>gi|289209328|ref|YP_003461394.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. K90mix]
 gi|288944959|gb|ADC72658.1| ribosomal protein L4/L1e [Thioalkalivibrio sp. K90mix]
          Length = 201

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 1/191 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            + +S   F     + ++ + +      +R G    K RS+V+  G+K + QKGTGRAR 
Sbjct: 11  SVELSPVCFERDFNESLVHQSVVAFLAGQRQGTRAQKTRSDVSGGGAKPFRQKGTGRARA 70

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
            +     + GGGK F          L KK+   A+   LS+      + V+ +      K
Sbjct: 71  GTIRSPLWTGGGKVFAARTRDFSQKLNKKMYRAAMASILSELVRQERLKVVADFAVASGK 130

Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           T+  V + + L      ++   + D     A  N+P+I+++ V GIN  +++    +V++
Sbjct: 131 TRDGVAKLKELG-LAKGLVVLAEADDMTARALGNVPHIDVVDVAGINPANLVGAETVVMT 189

Query: 196 KSAIEALEDRF 206
           ++AI  +E+  
Sbjct: 190 EAAIRKVEEWL 200


>gi|327399522|ref|YP_004340391.1| 50S ribosomal protein L4/L1e [Hippea maritima DSM 10411]
 gi|327182151|gb|AEA34332.1| ribosomal protein L4/L1e [Hippea maritima DSM 10411]
          Length = 207

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 1/204 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ V +   +  G + ++     +K +  +  RV+R      R G + +K R EV+  G
Sbjct: 1   MKVKVVDKKNQAVGEVEINIQPKEVKNKGVLFNRVVRAMLMNARQGTASTKTRGEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     + GGG  FGP P      + KK + +A   AL+ +    
Sbjct: 61  KKPWRQKGTGRARAGSIRSPLWVGGGVIFGPKPRDYELKMNKKEKRVAFIEALAQRIEEG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++VID+L  ++ KT+      +        +    +   N  L+ RNI  + +  +  +
Sbjct: 121 KLIVIDDLSFEKPKTRDAYEIVKN-LNLKKALFVLEKGMENAYLSLRNIKGVEVRNIDTL 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N YD+LR   +++ K+ +E L  R
Sbjct: 180 NTYDVLRFQNIIIPKTVVEKLNGR 203


>gi|330837654|ref|YP_004412295.1| 50S ribosomal protein L4P [Spirochaeta coccoides DSM 17374]
 gi|329749557|gb|AEC02913.1| LSU ribosomal protein L4P [Spirochaeta coccoides DSM 17374]
          Length = 209

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 111/206 (53%), Gaps = 1/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + +G++   I +++ +FA +   G +   +  +   +R+G + +K R+EV Y+ 
Sbjct: 1   METKVYSTEGKEIRTIQLNDAVFAREVSDGSIYYAVNNELANRRVGTACTKTRAEVNYSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QKGTG AR   K    + GGG  FGP P    + +PKKV+ LA++  LS      
Sbjct: 61  AKPYKQKGTGNARAGDKKSPVWVGGGTIFGPRPRDYSYVIPKKVKRLAMKSLLSLSVQEE 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFR-ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            ++V+++  ++  KTK L+   +  ++  N  +I     D   + AA+NIPN+ +L    
Sbjct: 121 RLVVVEDFTAESGKTKELMAILKNFMEGLNRTLIILKDDDVLLRRAAKNIPNVRVLSYNR 180

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++L   K+++ ++A + L D +
Sbjct: 181 LAAKELLYGRKVIVMETAAKNLNDFY 206


>gi|332018616|gb|EGI59197.1| 39S ribosomal protein L4, mitochondrial [Acromyrmex echinatior]
          Length = 286

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 3/205 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++  ++ +  G++++   I+A  P+  I+ + +RWQ   + +  + +K R+EV   G K 
Sbjct: 61  NLNTIEEKKLGLVTLHPHIYAAAPRIDIIHQNIRWQRMYRWVSYAHTKTRAEVRGGGRKP 120

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKGTGRARH S     +RGGG A GP  P    + LP   R   L   LS K   +D+
Sbjct: 121 WPQKGTGRARHGSIRSPLWRGGGVAHGPRSPTPHFYMLPFYTRIAGLTATLSVKLAQDDL 180

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGI 181
            ++D L     +  Y+       +   ++++      +  N  LA   I ++N++PV G+
Sbjct: 181 HIVDELEIPTSEPSYVEQLIEERNWGPSILLVDSYDIMPTNITLATDKIKHVNIMPVYGL 240

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVY +L+ + LVL++ A   +E++ 
Sbjct: 241 NVYSMLKHNTLVLTEKAARLIEEKL 265


>gi|15805341|ref|NP_294035.1| 50S ribosomal protein L4 [Deinococcus radiodurans R1]
 gi|45477175|sp|Q9RXK1|RL4_DEIRA RecName: Full=50S ribosomal protein L4
 gi|16975049|pdb|1JZX|K Chain K, Structural Basis For The Interaction Of Antibiotics With
           The Peptidyl Transferase Center In Eubacteria
 gi|16975053|pdb|1JZY|K Chain K, Structural Basis For The Interaction Of Antibiotics With
           The Peptidyl Transferase Center In Eubacteria
 gi|16975057|pdb|1JZZ|K Chain K, Structural Basis For The Interaction Of Antibiotics With
           The Peptidyl Transferase Center In Eubacteria
 gi|16975065|pdb|1K01|K Chain K, Structural Basis For The Interaction Of Antibiotics With
           The Peptidyl Transferase Center In Eubacteria
 gi|20150343|pdb|1J5A|K Chain K, Structural Basis For The Interaction Of Antibiotics With
           The Peptidyl Transferase Center In Eubacteria
 gi|28948922|pdb|1NKW|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
           Deinococcus Radiodurans
 gi|51247375|pdb|1SM1|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
           Radiodurans With Quinupristin And Dalfopristin
 gi|190613492|pdb|2ZJP|C Chain C, Thiopeptide Antibiotic Nosiheptide Bound To The Large
           Ribosomal Subunit Of Deinococcus Radiodurans
 gi|190613522|pdb|2ZJQ|C Chain C, Interaction Of L7 With L11 Induced By Microccocin Binding
           To The Deinococcus Radiodurans 50s Subunit
 gi|190613553|pdb|2ZJR|C Chain C, Refined Native Structure Of The Large Ribosomal Subunit
           (50s) From Deinococcus Radiodurans
 gi|190613660|pdb|3CF5|C Chain C, Thiopeptide Antibiotic Thiostrepton Bound To The Large
           Ribosomal Subunit Of Deinococcus Radiodurans
 gi|203282459|pdb|3DLL|C Chain C, The Oxazolidinone Antibiotics Perturb The Ribosomal
           Peptidyl-Transferase Center And Effect Trna Positioning
 gi|323714543|pdb|3PIO|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair
           Lankamycin And Lankacidin In Complex With The Large
           Ribosomal Subunit
 gi|323714573|pdb|3PIP|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair
           Lankamycin And Lankacidin In Complex With The Large
           Ribosomal Subunit
 gi|6457986|gb|AAF09893.1|AE001892_4 ribosomal protein L4 [Deinococcus radiodurans R1]
          Length = 205

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 6/199 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   +G     + +       +   G+L  V+ WQ   +R G + ++ R++V+ T
Sbjct: 1   MAQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKT 54

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH  +SV  F GGG AFGP P    + LP++VR L L  A++ +   
Sbjct: 55  GRKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEG 114

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++ +D     + KTK  ++  +   L     +     D N + AARN+  +++LPV G
Sbjct: 115 GKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAG 174

Query: 181 INVYDILRCSKLVLSKSAI 199
           +NVYDILR  +LV+  +A+
Sbjct: 175 VNVYDILRHDRLVIDAAAL 193


>gi|71891976|ref|YP_277706.1| 50S ribosomal protein L4 [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|109893577|sp|Q493K7|RL4_BLOPB RecName: Full=50S ribosomal protein L4
 gi|71796082|gb|AAZ40833.1| 50S ribosomal subunit protein L4 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 210

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 4/209 (1%)

Query: 2   IELSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57
           +EL VR+   E    D    SVS++IF     Q ++ +V+       R G    K RSEV
Sbjct: 1   MELEVRDFTTEINILDSEKFSVSDEIFKCPFNQALIHQVISTYLTNSRQGTRSQKSRSEV 60

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117
           + +  K + QKGTGRAR  S     +R GG  F   P +    + KK+   A+R  LS  
Sbjct: 61  SGSNKKPWRQKGTGRARSGSVKSPIWRSGGVTFAAKPKLYAQKINKKMYRGAIRSILSKL 120

Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
            C N + ++ NL  KE KTK L+ + R +    +++I    LD+N  LA+RN+  I +  
Sbjct: 121 VCDNRLFLVRNLFIKEPKTKLLLEKLRTITSKKSILIFTDFLDKNLLLASRNVHKIEVRT 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
              I+   ++  +  +++ + I+ +E + 
Sbjct: 181 ATHIDPVSLINFNVTLIADNVIKKIEKQL 209


>gi|254796648|ref|YP_003081484.1| ribosomal protein L4/L1 family [Neorickettsia risticii str.
           Illinois]
 gi|254589885|gb|ACT69247.1| ribosomal protein L4/L1 family [Neorickettsia risticii str.
           Illinois]
          Length = 214

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 4/208 (1%)

Query: 3   ELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           E+ V +       G ++V   +     +  +L+ V+ WQ  ++R G  K+KG SEV+ T 
Sbjct: 5   EVGVLDFGATSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTT 64

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S    QFR GG  FGPV      ++ KKVRS AL  ALS +F   
Sbjct: 65  RKPYRQKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSFALCSALSMRFAEG 124

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            + V+++    E K   L+  F +          +I   + + +   AA N+  + +L  
Sbjct: 125 RLFVLESCRLGESKAATLLKWFASNTELSVGKKFLIVMEEKNEDLLRAASNLHWVKVLWG 184

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
              NVYD++    ++L K++++ L  R 
Sbjct: 185 SSANVYDVVLHDFVLLEKASVDVLVKRL 212


>gi|283780375|ref|YP_003371130.1| 50S ribosomal protein L4/L1e [Pirellula staleyi DSM 6068]
 gi|283438828|gb|ADB17270.1| ribosomal protein L4/L1e [Pirellula staleyi DSM 6068]
          Length = 209

 Score =  155 bits (391), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 103/208 (49%), Gaps = 1/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V N  G + G   +     A K  Q +L  V+       R G  ++KGR EVA +
Sbjct: 1   MATLPVFNRSGAEVGKYEIDPAEIAPKISQQLLHDVVVMYQANLRQGTHRTKGRGEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             KMY QKGTG AR  S+     RGGG  F   P    + LP+K    A R A++ K   
Sbjct: 61  TKKMYRQKGTGNARAGSRRSGVRRGGGHIFALRPRDYSYRLPRKAVQAATRMAIAHKLNQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N ++VID L     KTK + T  + L     + ++    LD N   +ARNI  + + PV 
Sbjct: 121 NSVVVIDELSMAAPKTKEVATILKTLGLAGASTLVTTAGLDVNVYKSARNIDKVTVSPVA 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            +N   +L   K++++K+A++A++ R K
Sbjct: 181 DLNALSVLMPRKMLVTKAALDAIKTRAK 208


>gi|109893662|sp|Q5GWT5|RL4_XANOR RecName: Full=50S ribosomal protein L4
          Length = 200

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 1/191 (0%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            +SVSE +F  +  + ++ +V+       R G    K RSEVA   +K   ++  G ARH
Sbjct: 10  KVSVSEAVFGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GTTKKSKKQKGGGARH 68

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
            + +   F GGG  F   P      + +K+   A+    S+      +M++D    +  K
Sbjct: 69  GALTAPIFVGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLEATK 128

Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           TK L+ + + LD+    +I   +   +  L+ARN+P + +  VQG++   ++    +V++
Sbjct: 129 TKDLIEKLKGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTVVIT 188

Query: 196 KSAIEALEDRF 206
             A++ +E+  
Sbjct: 189 ADAVKKVEEWL 199


>gi|218961432|ref|YP_001741207.1| 50S ribosomal protein L4 [Candidatus Cloacamonas acidaminovorans]
 gi|167730089|emb|CAO81001.1| 50S ribosomal protein L4 [Candidatus Cloacamonas acidaminovorans]
          Length = 211

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 3/209 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQG--ILARVLRWQSWRKRIGCSKSKGRSEVA 58
           M+     N+ GE  G + + E IF +       +L  V+      +R G  + K RS  A
Sbjct: 1   MLTAKRYNMQGELIGEVDLPEGIFEVDVNAPKILLNEVVTMFLANQRQGTVQKKNRSMTA 60

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
            +  K++ QKGTG AR  ++       GGKAF   P      +P+  + LAL+ AL+D+ 
Sbjct: 61  GSTRKLFRQKGTGNARVGTRRSPIRVHGGKAFAIYPKDWYRKIPRTKKRLALKVALTDRA 120

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
               IM++DNL  ++  TK  V    + +      +I           +  N+P +    
Sbjct: 121 REGRIMIVDNLSFEKPNTKLAVELLNKIIPEKGYKLIVTDGHHIPTVKSFANLPEVMTDR 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
              +N Y++L+ S ++++  A++ +E+ F
Sbjct: 181 ADSLNAYEVLKSSYIIMTDEALKKVEEVF 209


>gi|195114622|ref|XP_002001866.1| GI14673 [Drosophila mojavensis]
 gi|193912441|gb|EDW11308.1| GI14673 [Drosophila mojavensis]
          Length = 911

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G++ +  D+FA +P+  ++   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 694 KVGLMELHPDVFAAQPRVDVIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGR 753

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S     F+GGG   GP  P    + LP   R + L   LS K   +D+ +I+++  
Sbjct: 754 ARHGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVMGLTSTLSVKLAQDDLHIIEDVEI 813

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                +++    +  +   +++I         N   A  +I  +NL+P  G+NVY +L+ 
Sbjct: 814 PTKDAQFIRDLIQERNWGPSVLIVDKHDVFPENICYATDSIGYVNLMPAYGLNVYSMLKH 873

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+  A++ LE+R 
Sbjct: 874 DTLVLTVEAVKHLEERL 890


>gi|301772042|ref|XP_002921423.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Ailuropoda
           melanoleuca]
 gi|281337408|gb|EFB12992.1| hypothetical protein PANDA_010325 [Ailuropoda melanoleuca]
          Length = 294

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 4/199 (2%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E  G+  +  ++F++ P+  IL +V+ WQ   KRI  +K+K R+EV   G K + QKG+G
Sbjct: 75  ERVGLAELHPEVFSIAPRLDILHQVVTWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGSG 134

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           R+RH S     +RGGG A GP  P    + LP KVR   L+ AL+ K   +D+ ++D+L 
Sbjct: 135 RSRHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLE 194

Query: 131 SKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                 +YL    R     +++++       + +N   AA  +   NL+P  G+NVY +L
Sbjct: 195 LPTSDPQYLTELARYRRWGDSVLLVDLAHDDMPQNIVAAASGLKTFNLIPAVGLNVYSML 254

Query: 188 RCSKLVLSKSAIEALEDRF 206
           +   LVL+   +  LE + 
Sbjct: 255 KHQTLVLTLQTVAFLEQKL 273


>gi|15639183|ref|NP_218629.1| 50S ribosomal protein L4 [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025423|ref|YP_001933195.1| 50S ribosomal protein L4 [Treponema pallidum subsp. pallidum SS14]
 gi|6094081|sp|O83220|RL4_TREPA RecName: Full=50S ribosomal protein L4
 gi|226731440|sp|B2S2D7|RL4_TREPS RecName: Full=50S ribosomal protein L4
 gi|3322454|gb|AAC65175.1| ribosomal protein L4 (rplD) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017998|gb|ACD70616.1| ribosomal protein L4 [Treponema pallidum subsp. pallidum SS14]
 gi|291059597|gb|ADD72332.1| ribosomal protein L4/L1 family [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 216

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 62/206 (30%), Positives = 107/206 (51%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E +V +++G     + + E +F L   +G++   +  +   KR+G + +KGRSEV  + 
Sbjct: 1   MEKTVYSVEGVALRSVELDESVFGLSVNRGVIYYAINSELSNKRLGTACTKGRSEVHGSN 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K Y QKGTGRAR   K      GGG  FGP P    +ALPKKV+ LA++  LS K   +
Sbjct: 61  TKPYKQKGTGRARRGDKKSPLLVGGGTIFGPKPRDFHYALPKKVKRLAMKSLLSLKAQGD 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + VI++   +  KT+ L+   R        +      D   + A RNIP ++ L    +
Sbjct: 121 ALTVIEDFTVESGKTRDLIQVLRHFAQRERTVFILQNDDALLKRAGRNIPTLSFLSYNRL 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
             +D+    K+++ ++A+  + D ++
Sbjct: 181 RAHDLFYGRKVLVLETAVHKIADFYR 206


>gi|88608608|ref|YP_506158.1| ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama]
 gi|109893610|sp|Q2GED8|RL4_NEOSM RecName: Full=50S ribosomal protein L4
 gi|88600777|gb|ABD46245.1| ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama]
          Length = 214

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 4/208 (1%)

Query: 3   ELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           E+ V +       G ++V   +     +  +L+ V+ WQ  ++R G  K+KG SEV+ T 
Sbjct: 5   EVGVLDFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTT 64

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S    QFR GG  FGPV      ++ KKVRSLALR ALS +F   
Sbjct: 65  RKPYRQKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSLALRSALSMRFAEG 124

Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL---DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            + V+++    E K   L+  F +     +    +I   + +     AA N+  + +L  
Sbjct: 125 RLFVLESSRLGESKAATLLKWFASNAELSVGKKFLIVTEEKNEGLLRAASNLHWVKVLWG 184

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
              NVYD++    ++L K++++ L  R 
Sbjct: 185 SSANVYDVVLHDFVLLEKASVDVLVKRL 212


>gi|262277095|ref|ZP_06054888.1| ribosomal protein, L4/L1 family [alpha proteobacterium HIMB114]
 gi|262224198|gb|EEY74657.1| ribosomal protein, L4/L1 family [alpha proteobacterium HIMB114]
          Length = 209

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++++  ++DG++ G +  S+ +F +KP++ I+ +V+ WQ  R       +K R EV  + 
Sbjct: 1   MKINEISIDGKNVGSLEASDKVFKVKPRKDIIQQVIDWQQNRMFKKTGHTKSRGEVKGSR 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRSLALRHALSDKFC 119
            K+  QKG+G ARH + +   F GGG A GP          L KKVR L L HALS K  
Sbjct: 61  KKIVQQKGSGGARHGNITAPVFVGGGIAHGPRHRGNYAVKKLNKKVRKLGLVHALSVKAK 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           S+ I + +       KTK      + +   +AL I      + F  + +NIPN   L   
Sbjct: 121 SDQIAIFNEPKISGLKTKNFKDFLKNIKSKSALFIHHKDAPKEFVRSIKNIPNSKKLEDV 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
           G NVYD+++  K++ +K + +A+E+R 
Sbjct: 181 GTNVYDLIKYEKVLFTKESFKAIEERL 207


>gi|87306537|ref|ZP_01088684.1| 50S ribosomal protein L4 [Blastopirellula marina DSM 3645]
 gi|87290716|gb|EAQ82603.1| 50S ribosomal protein L4 [Blastopirellula marina DSM 3645]
          Length = 222

 Score =  154 bits (389), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 1/203 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  GE  G   +     A +  + +L   +       R G  ++K R EVA +
Sbjct: 1   MPSLPIFDTTGEKVGSYDIELTDIAPRISKQLLHDAVVMYQANLRQGTHRTKARGEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             KMY QKGTG AR   K     RGGG      P    + L +K   LA R A + K  S
Sbjct: 61  TKKMYRQKGTGNARAGHKRSGVRRGGGHIHAKRPRDYSYRLNRKALQLATRMAFASKIQS 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             +++++ L   E KTK +    +A      + +I    LD     +ARNI  + + PV 
Sbjct: 121 GQVVILNELALAEVKTKAVANTLKALKVYGGSTLITIASLDDKVYKSARNIEKVTVSPVS 180

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N   IL   +LV++KSA++A+
Sbjct: 181 ELNALKILSPKRLVVTKSAMDAI 203


>gi|320335522|ref|YP_004172233.1| 50S ribosomal protein L4/L1e [Deinococcus maricopensis DSM 21211]
 gi|319756811|gb|ADV68568.1| ribosomal protein L4/L1e [Deinococcus maricopensis DSM 21211]
          Length = 201

 Score =  154 bits (389), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/200 (35%), Positives = 105/200 (52%), Gaps = 7/200 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V   +G     + +       +    +L  V+ WQ  ++R G + +K R++V+  
Sbjct: 1   MAQIKVIGQNGGRNIDVDLP------EVNTHVLHEVVSWQLAKRRQGSASTKTRAQVSRG 54

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH  +SV  F GGG AFGP P    + LPKKVR L L  AL+D+   
Sbjct: 55  GKKMYSQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYAYTLPKKVRQLGLAMALADRQAQ 114

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++ +D       KTK  V   +   +  +  +     D   + AARN+  +  LPV G
Sbjct: 115 DKLLAVDGFGLD-GKTKSFVAWAKENGMDGSERVFLVTDDEATRRAARNLSWVTALPVAG 173

Query: 181 INVYDILRCSKLVLSKSAIE 200
           +NVYDILR  +L++   A+E
Sbjct: 174 LNVYDILRHERLIIDAIALE 193


>gi|149192607|ref|ZP_01870761.1| 50S ribosomal protein L4 [Vibrio shilonii AK1]
 gi|148833556|gb|EDL50639.1| 50S ribosomal protein L4 [Vibrio shilonii AK1]
          Length = 182

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  D      ++VSE  F     + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMVKGADA-----LTVSETTFGRDFNEALVHQVVVAFAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+DN   +  KTK LV + + L+L++A +I   ++D N  LAARN+  ++   V GI
Sbjct: 116 RLIVVDNFSVEAPKTKELVAKLKELELTDA-LIVTSEVDENLFLAARNLYKVDARDVAGI 174

Query: 182 NVYDILRC 189
           +   ++  
Sbjct: 175 DPVSLIAF 182


>gi|254672672|emb|CBA06527.1| 50S ribosomal protein L4 [Neisseria meningitidis alpha275]
          Length = 185

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 2/184 (1%)

Query: 24  FALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQF 83
           FA +  + ++ +++       R G    K R+EV ++  K   QKGTGRAR    S   +
Sbjct: 2   FAREYNEALVHQLVNAYLANARSGNRAQKTRAEVKHSTKKPSRQKGTGRARSGMTSSPLW 61

Query: 84  RGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR 142
           R GG+AF   P       + +K+    +   LS       +  I+ L ++  KTK    +
Sbjct: 62  RKGGRAFPNKPDENFTQKVNRKMYRAGMATILSQLTRDERLFAIEALTAETPKTKVFAEQ 121

Query: 143 FRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
            + L L   L +   QLD N  LA+RN+PN+ +L  Q ++ Y +LR  K++++K A+  L
Sbjct: 122 VKNLGLEQVLFV-TKQLDENVYLASRNLPNVLVLEAQQVDPYSLLRYKKVIITKDAVAQL 180

Query: 203 EDRF 206
           E+++
Sbjct: 181 EEQW 184


>gi|297843518|ref|XP_002889640.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335482|gb|EFH65899.1| hypothetical protein ARALYDRAFT_470751 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 280

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             L + + +GE  G   +          + ++ R +      KR G + +  R EV   G
Sbjct: 52  ATLPIISFEGEKVGETYLDLKTAPEDTARAVVHRAIVTDLQNKRRGTASTLTRGEVRGGG 111

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K Y QK TG AR  S+      GGG  FGP P      + +K + LA+  ALS    + 
Sbjct: 112 IKPYAQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAVSAE 171

Query: 121 -NDIMVIDN-LVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
              I+V +     ++ KTK  +   +    D     +     +D N   ++RNI  + +L
Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N++DIL   KLVL+ +A+E L  R+
Sbjct: 232 TPRTLNLFDILNSDKLVLTPAAVEFLNARY 261


>gi|126322913|ref|XP_001367717.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 426

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 3/196 (1%)

Query: 14  KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73
            G+  +  D+FA+ P+  IL  V  WQ   KRI  +K+K R+EV   G K + QKG+GRA
Sbjct: 210 VGLADLHPDVFAVAPRLDILHDVAMWQKNFKRISYAKTKTRAEVRGGGRKPWRQKGSGRA 269

Query: 74  RHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           RH S     +RGGG A GP  P    + LP KVR L L+ AL+ K   +D+ ++D+L   
Sbjct: 270 RHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVLGLKVALTVKLMQDDLHIVDSLELP 329

Query: 133 ECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
               +YL+   R     +++++     ++ +N   A  N+  INL+P  G+NV+ +L+  
Sbjct: 330 TSDPRYLLDLVRHRYWGDSVLLVDVDEEMPQNIVSAVSNLKTINLVPAVGLNVHSMLKHQ 389

Query: 191 KLVLSKSAIEALEDRF 206
            LVL+ + +  LE + 
Sbjct: 390 TLVLTLNTVAFLEKKL 405


>gi|302697703|ref|XP_003038530.1| hypothetical protein SCHCODRAFT_80709 [Schizophyllum commune H4-8]
 gi|300112227|gb|EFJ03628.1| hypothetical protein SCHCODRAFT_80709 [Schizophyllum commune H4-8]
          Length = 251

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 1/190 (0%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +   +F    ++ IL   +       R G + +K R+EV  +  K+  QKGTG AR    
Sbjct: 20  LHPSVFNHPIRRDILHLCVVHYRDSLRQGSANTKNRAEVRGSTRKIMRQKGTGNARVGDA 79

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138
                RGGG  FGP P      LP+KV  + +R ALS K    +  ++  L   E KT+ 
Sbjct: 80  QSPIRRGGGVVFGPKPRDFSTKLPRKVIEMGMRVALSAKVKEQNFGIMRRLEWPEGKTRT 139

Query: 139 LVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197
           L  R   L L   L + G + L    + A RNIP + L+    +NVY+ L+  ++V    
Sbjct: 140 LAERIETLGLRKTLFVTGSEQLPETLERAFRNIPMVKLVHASELNVYETLKWPRIVADLD 199

Query: 198 AIEALEDRFK 207
           A++  E+  K
Sbjct: 200 AVKYFEESLK 209


>gi|62296686|sp|P49665|RL4_THETH RecName: Full=50S ribosomal protein L4
 gi|12056100|emb|CAC21224.1| ribosomal protein L4 [Thermus thermophilus]
          Length = 210

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V +  G  +    +       +    +L  V+RWQ  ++R G + +K R EVAY+G 
Sbjct: 8   QIPVLSPSGRRELAADLP-----AEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGR 62

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K++ QK TGRARH       F GGG  FGP P    + LPKKVR   L  A++D+     
Sbjct: 63  KIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGK 122

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +++++     E + + +    +   L  +  +     +   + AARN+P +  L  +G+N
Sbjct: 123 LLLVEAFAGVERQDQAIPAWAKEAGLDGSESVLLVTGNELVRRAARNLPWVVTLAPEGLN 182

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VYDI+R  +LV+   A E  ++R
Sbjct: 183 VYDIVRTERLVMDLDAWEVFQNR 205


>gi|303284373|ref|XP_003061477.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456807|gb|EEH54107.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 252

 Score =  152 bits (385), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 101/209 (48%), Gaps = 5/209 (2%)

Query: 3   ELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
            L V  +DG   G  + +    F    +  ++ RV+ WQ  + R G  K+K R EV+ T 
Sbjct: 3   TLPVFTIDGTPTGETLILPGRHFDQPLRVDLVHRVVHWQRNKARKGRKKTKTRGEVSGTT 62

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K   QKG GRAR  S    Q RGGG A GPV      AL K+VR   L+ ALS K    
Sbjct: 63  RKARPQKGGGRARVGSLRAPQMRGGGVAHGPVVRSYETALNKRVRRAGLKVALSAKLAEG 122

Query: 122 DIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR---NFQLAARNIPNINLLP 177
            +M V       E KTK+L  R   L  + +L            N + A+RN+P ++++ 
Sbjct: 123 RVMLVRSTHDGVEPKTKWLDERLDKLLGNQSLAAGERSHSTWISNAKRASRNMPYVHVMH 182

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
            +G+NVYDILR   L ++  A+  L  R 
Sbjct: 183 QRGLNVYDILRYRSLAMTPDALRELVRRL 211


>gi|327287992|ref|XP_003228712.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Anolis
           carolinensis]
          Length = 314

 Score =  152 bits (384), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 2/194 (1%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
           G+  +  D+FA+ P+  IL  V  WQ   KRI  +K+K R+EV   G K + QKG+GRAR
Sbjct: 100 GLADLHPDVFAVMPRIDILHTVATWQRNFKRISYAKTKTRAEVRGGGRKPWRQKGSGRAR 159

Query: 75  HSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133
           H S     +RGGG A GP  P    + LP KVR   L+ AL+ K   +++ V+D+L    
Sbjct: 160 HGSIRSPIWRGGGVAHGPRGPTSYFYMLPMKVRVQGLKVALTVKLAQDNLHVVDSLEIPT 219

Query: 134 CKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
              +YL+   R      +++ +   ++  N + AA ++  I +LP+ G+NV+ +L+   L
Sbjct: 220 SDPQYLMDLARYRHWGTSVLFVHVNEIPENIKSAANDLKTITILPITGLNVHSMLKYETL 279

Query: 193 VLSKSAIEALEDRF 206
           VL+   +  LE + 
Sbjct: 280 VLTLDTVSFLEKKL 293


>gi|158297277|ref|XP_317543.4| AGAP007937-PA [Anopheles gambiae str. PEST]
 gi|157015117|gb|EAA12669.4| AGAP007937-PA [Anopheles gambiae str. PEST]
          Length = 224

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 3/196 (1%)

Query: 14  KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73
            G++ +   +F   P+  I+ + + WQ   + +  + +K R+EV   G K + QKG GRA
Sbjct: 9   SGIVELDNAVFGASPRIDIVHQNIEWQRKYRFVSFAHTKTRNEVRGGGRKPWPQKGLGRA 68

Query: 74  RHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           RH S     +RGGG A GP  P    + LP   R L L   LS K   +D+ V+ NL   
Sbjct: 69  RHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQDDLHVVKNLEIP 128

Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
               +YL     A     +++       L RN  ++A NI +INL+P  G+NVY +L+ +
Sbjct: 129 TDDPQYLQDLVAARQWGPSVLFVDATDVLSRNISISAENIDHINLMPTYGLNVYSMLKHN 188

Query: 191 KLVLSKSAIEALEDRF 206
            +VL++ A+ ++E + 
Sbjct: 189 TVVLTEDAVRSVESKL 204


>gi|307170893|gb|EFN63004.1| 39S ribosomal protein L4, mitochondrial [Camponotus floridanus]
          Length = 285

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 3/202 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            ++ +  G+I++   I+A  P+  I+ + +RWQ   + +  + +K R+EV   G K + Q
Sbjct: 63  TVEEKKLGLITLHPHIYAAAPRIDIIHQNVRWQKMYRWVCYAHTKTRAEVRGGGRKPWPQ 122

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KGTGRARH S     +RGGG A GP  P    + LP   R   L   LS K   +D+ ++
Sbjct: 123 KGTGRARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFYTRVAGLTSTLSVKLAQDDLHIV 182

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGINVY 184
           + L     +  Y+       +   +++       +  N  LA   I ++NL+PV G+NVY
Sbjct: 183 NELEIPTSEPSYIEQLIEKRNWGPSVLFVDSYDIMPTNITLATDEIKHVNLMPVYGLNVY 242

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+ + LVL++ A   +E++ 
Sbjct: 243 SMLKHNTLVLTEKAARLIEEKL 264


>gi|18311386|ref|NP_563320.1| 50S ribosomal protein L4 [Clostridium perfringens str. 13]
 gi|18146070|dbj|BAB82110.1| 50S ribosomal protein L4 [Clostridium perfringens str. 13]
          Length = 175

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 3/174 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + N +G+  G I ++E +F ++  +  L +V+  Q   KR G   +K RSEV   
Sbjct: 1   MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+  GG  F P P     ++PK +R +A+  AL+ K   
Sbjct: 61  GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVA- 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNIN 174
            D++V+++L  +  KTK  V    A + +   +I   +++ N   +ARNI   N
Sbjct: 120 -DMVVLEDLTFEAPKTKEAVKMLNAFE-AKKTLIITAEVNENVYKSARNIRRCN 171


>gi|304413146|ref|ZP_07394619.1| 50S ribosomal subunit protein L4 [Candidatus Regiella insecticola
           LSR1]
 gi|304283989|gb|EFL92382.1| 50S ribosomal subunit protein L4 [Candidatus Regiella insecticola
           LSR1]
          Length = 201

 Score =  151 bits (382), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++++  G    V++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELAIKDTQG----VLTVSETTFGRVFNEALVHQVVVAYAAVARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARAGSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V+     +  KTK L+ + + + L +  +I   ++  N  LA+RN+  +++  V GI
Sbjct: 117 RLIVVKEFSVEMPKTKLLLQKLKEMALEDV-LIVTKEIADNLLLASRNLYKVDVCDVAGI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++   K+V++  A++ +E+  
Sbjct: 176 DPVSLIAFDKVVMTTDAVQQIEEML 200


>gi|261854951|ref|YP_003262234.1| ribosomal protein L4/L1e [Halothiobacillus neapolitanus c2]
 gi|261835420|gb|ACX95187.1| ribosomal protein L4/L1e [Halothiobacillus neapolitanus c2]
          Length = 202

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 6/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V+  DG     ISVSE IF     +G++ + +       R G  +   RSEV+  G
Sbjct: 1   MELQVK--DGAA---ISVSEQIFDRSYNEGLIHQAVVAFMAGARSGTKRQLTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKG+GRAR  +     +R GG  F   P      + +K   +A+    S+    +
Sbjct: 56  KKPWNQKGSGRARAGTTRSPIWRTGGVTFAARPRNFEQKINRKAYRVAMASIFSELVRQD 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQG 180
            ++V+++L     KT+ ++   + L +     +   +  D +F L +RN+  +  L    
Sbjct: 116 RLIVVESLTVSSPKTREVLGLVKNLGIQGGRTLFVAEAFDEHFFLGSRNVIELGYLTADM 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++   ++   ++V++++A++ +E+  
Sbjct: 176 LDPVSLVGAERVVITRAAVKMVEEWL 201


>gi|282934052|ref|ZP_06339334.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1]
 gi|281301884|gb|EFA94146.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1]
          Length = 158

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 85/158 (53%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G+D G +++++++F ++P + ++   +  Q    R G   +K RS V   
Sbjct: 1   MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    ++LP+K R LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           N+++V+D L     KTK        L++ + +++    
Sbjct: 121 NNLIVLDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSDN 158


>gi|157816923|ref|NP_001102224.1| 39S ribosomal protein L4, mitochondrial [Rattus norvegicus]
 gi|149020531|gb|EDL78336.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_b
           [Rattus norvegicus]
          Length = 294

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 111/202 (54%), Gaps = 4/202 (1%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+EV+  G K + QK
Sbjct: 72  FEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAEVSGGGRKPWQQK 131

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           G+GRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 132 GSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVD 191

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVY 184
           +L       +YL    +     +++++      ++ +N   A   + + NL+P  G+NVY
Sbjct: 192 SLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVMAATSRLNSFNLIPAVGLNVY 251

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+  ++  LED+ 
Sbjct: 252 SMLKHQTLVLTLPSVAFLEDKL 273


>gi|73986986|ref|XP_854013.1| PREDICTED: similar to mitochondrial ribosomal protein L4 isoform a
           [Canis familiaris]
          Length = 294

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 4/199 (2%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E  G+  +  ++F+  P+  IL +V  WQ   KRI  +K+K R+EV   G K + QKG+G
Sbjct: 75  ERVGLAELHPEVFSTAPRLDILHQVAIWQRNFKRISYAKTKTRAEVQGGGRKPWPQKGSG 134

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           R+RH S     +RGGG A GP  P    + LP KVR   L+ AL+ K   +D+ ++D+L 
Sbjct: 135 RSRHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLE 194

Query: 131 SKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                 +YL    R     +++++       + +N   A   +   NL+P  G+NVY +L
Sbjct: 195 LPTSDPQYLTELARYRHWGDSVLLVDLAYENMPQNIVAATTGLKTFNLIPAVGLNVYSML 254

Query: 188 RCSKLVLSKSAIEALEDRF 206
           +   LVL+   +  LE++ 
Sbjct: 255 KHQTLVLTLQTLAFLEEKL 273


>gi|195386106|ref|XP_002051745.1| GJ17161 [Drosophila virilis]
 gi|194148202|gb|EDW63900.1| GJ17161 [Drosophila virilis]
          Length = 298

 Score =  151 bits (381), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G++ +  D+FA +P+  I+   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 81  KVGLMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGR 140

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S     F+GGG   GP  P    + LP   R L L   LS K   +D+ +I+N+  
Sbjct: 141 ARHGSIRSPLFKGGGVVHGPRSPTSHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVEI 200

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                +++    +  +   +++I   Q     N   A   +  +NL+P  G+NVY +L+ 
Sbjct: 201 PTRDAQFIKDLIQERNWGPSVLIIDKQDIFPENICYATDTLGYVNLMPAFGLNVYSMLKH 260

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+  A++ LE+R 
Sbjct: 261 DTLVLTVDAVKHLEERL 277


>gi|147856052|emb|CAN78612.1| hypothetical protein VITISV_028922 [Vitis vinifera]
          Length = 306

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 2/205 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + + +  GE  G   ++     L   + ++ R +      +R G + +  R EV   G K
Sbjct: 53  IPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVRGGGKK 112

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QK TGRAR  S+      GGG  FGP P      + +K + LA+  A+S    +  +
Sbjct: 113 PYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSSAAVNTIV 172

Query: 124 MVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +   +    + KTK  ++  +    D     +    ++  N +L++RNI  + +L  + +
Sbjct: 173 VEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKMLTPRTL 232

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N++DIL   KLVL++  ++ L   +
Sbjct: 233 NLFDILNSDKLVLTQETVDYLNRMY 257


>gi|22478084|gb|AAH37064.1| Mrpl4 protein [Mus musculus]
          Length = 306

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 110/202 (54%), Gaps = 4/202 (1%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  I+ +V  WQ   +RI  + +K R+EV+  G K + QK
Sbjct: 84  FEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQK 143

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           G+GRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 144 GSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVD 203

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVY 184
           +L       +YL    +     +++++      ++ +N   A   + + NL+P  G+NVY
Sbjct: 204 SLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVY 263

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+  ++  LED+ 
Sbjct: 264 SMLKHQTLVLTLPSVAFLEDKL 285


>gi|119508437|ref|NP_075656.2| 39S ribosomal protein L4, mitochondrial [Mus musculus]
 gi|81881827|sp|Q9DCU6|RM04_MOUSE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
           Short=MRP-L4
 gi|12832465|dbj|BAB22118.1| unnamed protein product [Mus musculus]
 gi|13559359|dbj|BAB40839.1| mitochondrial ribosomal protein L4 (L4mt) [Mus musculus]
 gi|37572295|gb|AAH39983.2| Mitochondrial ribosomal protein L4 [Mus musculus]
 gi|38511681|gb|AAH61095.1| Mitochondrial ribosomal protein L4 [Mus musculus]
 gi|148693202|gb|EDL25149.1| mitochondrial ribosomal protein L4, isoform CRA_c [Mus musculus]
          Length = 294

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 110/202 (54%), Gaps = 4/202 (1%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  I+ +V  WQ   +RI  + +K R+EV+  G K + QK
Sbjct: 72  FEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQK 131

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           G+GRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 132 GSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVD 191

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVY 184
           +L       +YL    +     +++++      ++ +N   A   + + NL+P  G+NVY
Sbjct: 192 SLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVY 251

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+  ++  LED+ 
Sbjct: 252 SMLKHQTLVLTLPSVAFLEDKL 273


>gi|91094379|ref|XP_970941.1| PREDICTED: similar to mitochondrial 39S ribosomal protein L4
           [Tribolium castaneum]
 gi|270014913|gb|EFA11361.1| hypothetical protein TcasGA2_TC011518 [Tribolium castaneum]
          Length = 274

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 100/202 (49%), Gaps = 3/202 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            ++ +   ++ +  ++FA  P+  I+   +RWQS  + +  + +K R EV   G K + Q
Sbjct: 52  TIEEKKLAILELHPEVFAANPRVDIIHDNVRWQSLYRYVSYAHTKSRFEVRGGGRKPWPQ 111

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KG GRARH S     FRGGG   GP  P    + LP   R   L   LS K   +D+ VI
Sbjct: 112 KGLGRARHGSIRSPLFRGGGVIHGPKSPNPHFYMLPFYTRIHGLTATLSIKLAQDDLHVI 171

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVY 184
            +L        ++    ++     +++       + RN   A  ++ + NL+P  G+NVY
Sbjct: 172 TDLEIPTDDPNFVEELVKSRKWGPSVLFVDESDIMPRNITAATDSVKHFNLMPAYGLNVY 231

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+++A++ +E + 
Sbjct: 232 SMLKHDTLVLTRAALDLIESKL 253


>gi|17933744|ref|NP_524939.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster]
 gi|7298296|gb|AAF53526.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster]
 gi|16769472|gb|AAL28955.1| LD33485p [Drosophila melanogaster]
 gi|220944276|gb|ACL84681.1| mRpL4-PA [synthetic construct]
 gi|220954122|gb|ACL89604.1| mRpL4-PA [synthetic construct]
          Length = 296

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+I +  D+FA +P+  I+   + WQS  + +  + +K R+EV   G K + QKG GR
Sbjct: 79  KVGLIELHPDVFAAQPRVDIIQENVEWQSKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGR 138

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S      +GGG   GP  P    + LP   R L L   LS K   +D+ +IDN+  
Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIDNVDI 198

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                ++L       +   +++I         N   A+ ++  +NL+P  G+NVY +L+ 
Sbjct: 199 PTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+ +A++ LE R 
Sbjct: 259 DTLVLTVAAVKHLEQRL 275


>gi|90994503|ref|YP_536993.1| ribosomal protein L4 [Porphyra yezoensis]
 gi|109893086|sp|Q1XDH5|RK4_PORYE RecName: Full=50S ribosomal protein L4, chloroplastic
 gi|90819067|dbj|BAE92436.1| 50S ribosomal protein L4 [Porphyra yezoensis]
          Length = 214

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 3/204 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
            V N +G+  G   ++  + +      ++ R L  QS  KR G + +K RSEV   G K 
Sbjct: 10  QVYNWEGQVSGNADLNLKV-SQDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKP 68

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     +RGGG  FGP P      + KK R LALR AL++K  +  I+
Sbjct: 69  WRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFTKKMNKKERQLALRTALNNKSVNTLIV 128

Query: 125 VIDNLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
              N    + KTK  +      +  L+  +++   + D N  L+ RN+ N+ L+    +N
Sbjct: 129 ENFNSYFHQPKTKLFMEAIHRWNLDLNKKVLVIVDKKDPNVYLSIRNLHNVELISADTLN 188

Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206
           +  +L   K++++  A+  +++ +
Sbjct: 189 IMALLAAHKIIITVDALSKIQEVY 212


>gi|319787924|ref|YP_004147399.1| ribosomal protein L4/L1e [Pseudoxanthomonas suwonensis 11-1]
 gi|317466436|gb|ADV28168.1| ribosomal protein L4/L1e [Pseudoxanthomonas suwonensis 11-1]
          Length = 201

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++     +    +SVS+D+F     + ++ +V+       R G      R+EV+   
Sbjct: 1   MELTITGSANK----LSVSDDVFGRDFSEDLVHQVVVAYRNAGRAGTKAQLTRAEVS-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K+   A+   LS+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFAQKVNRKMYRAAISSILSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + V+++      KTK LV +    +L    +I       N  L+ARN+P + +  VQG+
Sbjct: 116 RLKVVESFDIDAPKTKGLVEKLAGYELGKRPLIVTEDASENLFLSARNLPYVQVRDVQGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    ++++  A++ +E+  
Sbjct: 176 DPVALVGADSVLITADAVKKVEEWL 200


>gi|32475059|ref|NP_868053.1| 50S ribosomal protein L4 [Rhodopirellula baltica SH 1]
 gi|46577190|sp|Q7UN19|RL4_RHOBA RecName: Full=50S ribosomal protein L4
 gi|32445599|emb|CAD75600.1| 50S ribosomal protein L4 [Rhodopirellula baltica SH 1]
 gi|327540579|gb|EGF27154.1| 50S ribosomal protein L4 [Rhodopirellula baltica WH47]
          Length = 222

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 1/205 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G++ G   +  +  A +  + +L  V+      KR G   ++ R +V+ T
Sbjct: 1   MANLPILDASGKEVGQYEIDTEQIANRVSKQLLHDVVVMYQANKRQGSHNTRTRGQVSGT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             KMY QKGTG AR  SK  +  RGGG A    P    + LPKK   +A R A+  +   
Sbjct: 61  NKKMYRQKGTGNARAGSKRTNVRRGGGVARTVKPRDYSYRLPKKAIKIATRMAIRSRIDD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +I+VI+ L     KT  +    + L   +   +I     D+    + RNI  + + PV+
Sbjct: 121 GEIVVINELKLDAPKTSQIAQILKNLGLANTTTLIATAGDDQIIYKSGRNISGVTVEPVR 180

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N   +L   +++ ++ A++ ++D
Sbjct: 181 QLNALTLLTPKRVLFTQEALDRVKD 205


>gi|282933637|ref|ZP_06339002.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1]
 gi|281302242|gb|EFA94479.1| ribosomal protein, L4/L1 family [Lactobacillus jensenii 208-1]
          Length = 158

 Score =  150 bits (380), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 86/158 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L + +  G+D G +++++++F ++P + ++   +  Q    R G   +K RS V   
Sbjct: 1   MANLKLIDQTGKDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    ++LP+KVR LA++  LS K   
Sbjct: 61  GKKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           N+++++D L     KTK        L++ + +++    
Sbjct: 121 NNLIILDQLSLDAPKTKEFKAVLGNLNVDSKVLVVSDN 158


>gi|170032333|ref|XP_001844036.1| mitochondrial 39S ribosomal protein L4 [Culex quinquefasciatus]
 gi|167872322|gb|EDS35705.1| mitochondrial 39S ribosomal protein L4 [Culex quinquefasciatus]
          Length = 278

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+  +S ++F   P+  I+ + + WQ   + +  + +K R+EV   G K + QKG G+
Sbjct: 62  KLGIQELSNEVFGATPRIDIVHQNVEWQRKYRYVSFAHAKTRNEVRGGGRKPWPQKGLGK 121

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S     +RGGG A GP  P    + LP   R L L   LS K   +D+ ++D+L  
Sbjct: 122 ARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQDDLHIVDSLDI 181

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                ++L    +      +++       + RN      +I ++NL+PV G+NVY +L+ 
Sbjct: 182 PTDDPQFLRDLVQERAWGPSVLFVDSSDLMPRNITAGTESIDHVNLMPVYGLNVYSMLKH 241

Query: 190 SKLVLSKSAIEALEDRF 206
           + LVL++ A E +E + 
Sbjct: 242 NTLVLTREAAEEIEAKL 258


>gi|29726790|pdb|1NWX|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
           Radiodurans With Abt-773
 gi|29726821|pdb|1NWY|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
           Radiodurans With Azithromycin
 gi|61680338|pdb|1XBP|C Chain C, Inhibition Of Peptide Bond Formation By Pleuromutilins:
           The Structure Of The 50s Ribosomal Subunit From
           Deinococcus Radiodurans In Complex With Tiamulin
          Length = 204

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 6/198 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
            +++V   +G     + +       +   G+L  V+ WQ   +R G + ++ R++V+ TG
Sbjct: 1   AQINVIGQNGGRTIELPLP------EVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTG 54

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            KMY QKGTG ARH  +SV  F GGG AFGP P    + LP++VR L L  A++ +    
Sbjct: 55  RKMYGQKGTGNARHGDRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGG 114

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++ +D     + KTK  ++  +   L     +     D N + AARN+  +++LPV G+
Sbjct: 115 KLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRAARNVSWVSVLPVAGV 174

Query: 182 NVYDILRCSKLVLSKSAI 199
           NVYDILR  +LV+  +A+
Sbjct: 175 NVYDILRHDRLVIDAAAL 192


>gi|284042805|ref|YP_003393145.1| ribosomal protein L4/L1e [Conexibacter woesei DSM 14684]
 gi|283947026|gb|ADB49770.1| ribosomal protein L4/L1e [Conexibacter woesei DSM 14684]
          Length = 210

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 87/191 (45%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
           G + + +  F  K    ++   +R +    R G S +K R  V   G+K + QKGTGRAR
Sbjct: 10  GEVVLDDLAFTAKFNGPLVHETVRSELNALRQGTSSTKTRGNVRGGGAKPWRQKGTGRAR 69

Query: 75  HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134
             S     ++GGG  FGP P      + +K R  ALR ALS +     + V D       
Sbjct: 70  AGSSRSPIWKGGGTVFGPSPRHYTFKVNRKARRAALRSALSVQADRGSLAVFDATTFDAP 129

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
            TK            N  ++     + N  L+ RN+  I +LPV+   V D++  + L++
Sbjct: 130 STKTASKLLADWGQPNPTLVLLDADEANAGLSFRNLERILVLPVEDAGVADVIGAASLLI 189

Query: 195 SKSAIEALEDR 205
           S++A+  +  R
Sbjct: 190 SETALAQITAR 200


>gi|225434666|ref|XP_002280152.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 290

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 2/205 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + + +  GE  G   ++     L   + ++ R +      +R G + +  R EV   G K
Sbjct: 53  IPILSFTGEKVGETQLNLKSAPLDTARAVVHRGIITDLQNRRRGTASTLTRGEVRGGGKK 112

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QK TGRAR  S+      GGG  FGP P      + +K + LA+  A+S    +  +
Sbjct: 113 PYPQKKTGRARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAMSSAAVNTIV 172

Query: 124 MVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +   +    + KTK  ++  +    D     +    ++  N +L++RNI  + +L  + +
Sbjct: 173 VEDFSDKFDKPKTKEFISAMKRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKMLTPRTL 232

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N++DIL   KLVL++  ++ L   +
Sbjct: 233 NLFDILNSDKLVLTQETVDYLNRMY 257


>gi|190572945|ref|YP_001970790.1| 50S ribosomal protein L4 [Stenotrophomonas maltophilia K279a]
 gi|194364535|ref|YP_002027145.1| 50S ribosomal protein L4 [Stenotrophomonas maltophilia R551-3]
 gi|254523850|ref|ZP_05135905.1| ribosomal protein, L4/L1 family [Stenotrophomonas sp. SKA14]
 gi|226730728|sp|B4SKW4|RL4_STRM5 RecName: Full=50S ribosomal protein L4
 gi|226730729|sp|B2FQ46|RL4_STRMK RecName: Full=50S ribosomal protein L4
 gi|190010867|emb|CAQ44476.1| putative 50S ribosomal protein L4 [Stenotrophomonas maltophilia
           K279a]
 gi|194347339|gb|ACF50462.1| ribosomal protein L4/L1e [Stenotrophomonas maltophilia R551-3]
 gi|219721441|gb|EED39966.1| ribosomal protein, L4/L1 family [Stenotrophomonas sp. SKA14]
          Length = 201

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +   + +    +SVS+ +F     + ++ +V+       R G    K RSEVA   
Sbjct: 1   MELVITGSNNK----VSVSDAVFGRDFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG  F   P      + +K    A+   LS+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVTFAAKPRSFEQKVNRKQYRAAMCAILSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + ++++   +   TK L+ +   L++    +I   +   +  L+ARN+P + +  VQG+
Sbjct: 116 RLTIVESFDVEVTNTKGLIAKLAGLEVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGL 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +   ++    +V++  A++ +E+  
Sbjct: 176 DPVSLVGADTVVITADAVKKVEEWL 200


>gi|2792020|emb|CAA63651.1| ribosomal protein L4 [Spinacia oleracea]
          Length = 293

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 2/205 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L + N  GE  G   ++      +  + ++ R L      KR G + +  R+EV   G K
Sbjct: 55  LPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRK 114

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QK TGRAR  S+      GGG  FGP P      + KK R LAL  A++    ++ +
Sbjct: 115 PYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFV 174

Query: 124 MVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +       ++ KTK  +   +    D +   +     L  N + + RNI  + LL  + +
Sbjct: 175 VEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSL 234

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N++D+L   KLV ++  I+ L  R+
Sbjct: 235 NLFDVLNAEKLVFTEGTIQYLNQRY 259


>gi|3914665|sp|O49937|RK4_SPIOL RecName: Full=50S ribosomal protein L4, chloroplastic;
           Short=R-protein L4; Flags: Precursor
 gi|189096129|pdb|3BBO|G Chain G, Homology Model For The Spinach Chloroplast 50s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
 gi|2792007|emb|CAA75149.1| chloroplast ribosomal protein L4 [Spinacia oleracea]
          Length = 293

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 2/205 (0%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           L + N  GE  G   ++      +  + ++ R L      KR G + +  R+EV   G K
Sbjct: 55  LPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRK 114

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QK TGRAR  S+      GGG  FGP P      + KK R LAL  A++    ++ +
Sbjct: 115 PYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFV 174

Query: 124 MVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +       ++ KTK  +   +    D +   +     L  N + + RNI  + LL  + +
Sbjct: 175 VEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSL 234

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N++D+L   KLV ++  I+ L  R+
Sbjct: 235 NLFDVLNAEKLVFTEGTIQYLNQRY 259


>gi|219685255|ref|ZP_03540075.1| 50S ribosomal protein L4 [Borrelia garinii Far04]
 gi|219673351|gb|EED30370.1| 50S ribosomal protein L4 [Borrelia garinii Far04]
          Length = 209

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++ G I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+  V++N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFSSFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SAI  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAINKLNEFY 207


>gi|51598733|ref|YP_072921.1| 50S ribosomal protein L4 [Borrelia garinii PBi]
 gi|81609968|sp|Q661E2|RL4_BORGA RecName: Full=50S ribosomal protein L4
 gi|51573304|gb|AAU07329.1| ribosomal protein L4 [Borrelia garinii PBi]
          Length = 209

 Score =  150 bits (379), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++ G I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+  V++N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|219684271|ref|ZP_03539215.1| 50S ribosomal protein L4 [Borrelia garinii PBr]
 gi|219672260|gb|EED29313.1| 50S ribosomal protein L4 [Borrelia garinii PBr]
          Length = 209

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++ G I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+  V++N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NNFKVVENFNIESGKTKDLALIIKNFSSFNGKVVILLGNDDQMIKRAGKNIRDLKILSFN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|82697333|ref|NP_001032527.1| 39S ribosomal protein L4, mitochondrial [Bos taurus]
 gi|108864722|sp|Q32PI6|RM04_BOVIN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
           Short=MRP-L4
 gi|81294225|gb|AAI08103.1| Mitochondrial ribosomal protein L4 [Bos taurus]
 gi|296485803|gb|DAA27918.1| 39S ribosomal protein L4, mitochondrial [Bos taurus]
          Length = 294

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 4/199 (2%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E  G+  +  D+F+  P+  IL +V  WQ   KRI  +K+K R+EV   G K + QKG+G
Sbjct: 75  ERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSG 134

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           RARH S     +RGGG A GP  P    + LP KVR   L+ AL+ K   +D+ ++D+L 
Sbjct: 135 RARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKVALTVKLAQDDLHIVDSLE 194

Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRN---FQLAARNIPNINLLPVQGINVYDIL 187
                 +YL+   R     ++++    + +        A   +   NL+P  G+NV+ +L
Sbjct: 195 LPTTDPQYLMELARYRRWGDSVLFVDLEHEDMPQNVVAATSGLKTFNLIPAIGLNVHSML 254

Query: 188 RCSKLVLSKSAIEALEDRF 206
           +   LVL+   +  LE++ 
Sbjct: 255 KHQTLVLTLPTVAFLEEKL 273


>gi|149179415|ref|ZP_01857969.1| 50S ribosomal protein L4 [Planctomyces maris DSM 8797]
 gi|148841726|gb|EDL56135.1| 50S ribosomal protein L4 [Planctomyces maris DSM 8797]
          Length = 209

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/206 (33%), Positives = 102/206 (49%), Gaps = 1/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           MI +++++  G++ G         A    + +L  V+      KRIG SK+K R  V  +
Sbjct: 1   MISVAIQDKAGKEVGKYEFESTELANGINRQLLHDVVVMYEANKRIGSSKTKSRGMVVGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+Y QKGTGRAR  +      RGGG  F   P    + LPKK   LA R A+  KF  
Sbjct: 61  TKKLYRQKGTGRARAGASRTPVRRGGGHTFAKTPKDWSYRLPKKAVKLATRMAILSKFED 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             + +ID L  +  KTK +    +AL   S + ++     D     +ARNI  + + P  
Sbjct: 121 EQVTLIDELALQAPKTKEVAGVLKALGLSSTSCLLTVEGHDPVVWKSARNIAGVQVSPAS 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205
            +N YD+L   ++VL+KSA++ L  R
Sbjct: 181 DLNAYDVLHQRQMVLTKSALDRLLGR 206


>gi|195343148|ref|XP_002038160.1| GM17909 [Drosophila sechellia]
 gi|194133010|gb|EDW54578.1| GM17909 [Drosophila sechellia]
          Length = 296

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+I +  D+FA +P+  I+   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 79  KVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGR 138

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S      +GGG   GP  P    + LP   R L L   LS K   +D+ +I+N+  
Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDI 198

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                ++L       +   +++I         N   A+ ++  +NL+P  G+NVY +L+ 
Sbjct: 199 PTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+ +A++ LE R 
Sbjct: 259 DTLVLTVAAVKHLEQRL 275


>gi|194213187|ref|XP_001493119.2| PREDICTED: similar to Mitochondrial ribosomal protein L4 [Equus
           caballus]
          Length = 326

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 4/199 (2%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+EV   G K + QKG+G
Sbjct: 107 ERVGLTELHPDVFAAAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGSG 166

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           RARH S     +RGGG A GP  P    + LP KVR   L+ ALS K   +D+ V+D+L 
Sbjct: 167 RARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVQGLKVALSVKLAQDDLHVVDSLE 226

Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRN---FQLAARNIPNINLLPVQGINVYDIL 187
               + +YL    R     +++++   + +        A   +   NL+P  G+NV+ +L
Sbjct: 227 LPSAEPQYLAELARYRRWGDSVLLVDLEHEDMPPSIVAATSCLKTFNLVPAIGLNVHSML 286

Query: 188 RCSKLVLSKSAIEALEDRF 206
           +   LVL+   +  LED+ 
Sbjct: 287 KHQTLVLTLRTVAFLEDKL 305


>gi|47212296|emb|CAF90559.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 302

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/201 (34%), Positives = 106/201 (52%), Gaps = 3/201 (1%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            D E  GV  +  D+FA+ P+  IL  V  WQ   KRI  + +K R+EV   G K + QK
Sbjct: 81  QDSEPVGVAHLHPDVFAVPPRLDILHMVETWQRNFKRISHAHTKVRAEVRGGGRKPWRQK 140

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           G+GRARH S     +RGGG + GP  P    + LP KVR L L+ ALS K   + + V++
Sbjct: 141 GSGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVLGLKVALSSKLAQSHLHVVE 200

Query: 128 NLVSKECKTKYLVTRFRALDLSNALI--IDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
           +L       +YL+   R      +L+   +  +L  +   A   + +IN++P  G+NV+ 
Sbjct: 201 SLNLPSPDPQYLLDLARRRHWGESLLLVHESEELPEDVLQATATLKSINVIPALGLNVHS 260

Query: 186 ILRCSKLVLSKSAIEALEDRF 206
           +L+   LVL+   +  LED+ 
Sbjct: 261 LLKHQALVLTLETLRFLEDKL 281


>gi|194857837|ref|XP_001969044.1| GG24171 [Drosophila erecta]
 gi|190660911|gb|EDV58103.1| GG24171 [Drosophila erecta]
          Length = 296

 Score =  150 bits (379), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+I +  DIFA +P+  I+   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 79  KVGLIELHPDIFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGR 138

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S      +GGG   GP  P    + LP   R L L   LS K   +D+ +I+++  
Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIESVDI 198

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                ++L       +   +++I         N   A+ ++  +NL+P  G+NVY +L+ 
Sbjct: 199 PTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+ +A++ LE R 
Sbjct: 259 DTLVLTVAAVKHLEQRL 275


>gi|195475362|ref|XP_002089953.1| GE19365 [Drosophila yakuba]
 gi|194176054|gb|EDW89665.1| GE19365 [Drosophila yakuba]
          Length = 296

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+I +  D+FA +P+  ++   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 79  KVGLIELHPDVFAAQPRVDLIQENVEWQRKYRYVSMAHTKNRAEVRGGGRKPWPQKGGGR 138

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S      +GGG   GP  P    + LP   R L L   LS K   +D+ +I+N+  
Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDI 198

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
               + +L       +   +++I         N   A+ ++  +NL+P  G+NVY +L+ 
Sbjct: 199 PTRDSDFLKDLIAERNWGPSVLIVDDDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+ +A++ LE R 
Sbjct: 259 DTLVLTVAAVKHLEQRL 275


>gi|195579557|ref|XP_002079628.1| GD21919 [Drosophila simulans]
 gi|194191637|gb|EDX05213.1| GD21919 [Drosophila simulans]
          Length = 296

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+I +  D+FA +P+  I+   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 79  KVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGGGR 138

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S      +GGG   GP  P    + LP   R L L   LS K   +D+ +I+N+  
Sbjct: 139 ARHGSLRSPMLKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDI 198

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                ++L       +   +++I         N   A+ ++  +NL+P  G+NVY +L+ 
Sbjct: 199 PTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKH 258

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+ +A++ LE R 
Sbjct: 259 DTLVLTVAAVKHLEQRL 275


>gi|194759834|ref|XP_001962152.1| GF15323 [Drosophila ananassae]
 gi|190615849|gb|EDV31373.1| GF15323 [Drosophila ananassae]
          Length = 296

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+I +  D+FA +P+  I+   + WQ   + +  +++K R+EV   G K + QKG GR
Sbjct: 79  KVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSFAQTKTRAEVRGGGRKPWPQKGMGR 138

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S     F+GGG   GP  P    + LP   R L L   LS K   +D+ +I+N+  
Sbjct: 139 ARHGSIRSPLFKGGGVVHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVDI 198

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                ++L       +   +++I         N   A   +  +NL+P  G+NVY +L+ 
Sbjct: 199 PTKDGQFLKDLIAERNWGPSVLIVDEDHMFPANICQATDELGYVNLMPSFGLNVYSMLKH 258

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+ +A++ LE R 
Sbjct: 259 DTLVLTVAAVKHLEQRL 275


>gi|242041475|ref|XP_002468132.1| hypothetical protein SORBIDRAFT_01g040120 [Sorghum bicolor]
 gi|241921986|gb|EER95130.1| hypothetical protein SORBIDRAFT_01g040120 [Sorghum bicolor]
          Length = 297

 Score =  150 bits (378), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 95/212 (44%), Gaps = 9/212 (4%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
             L V +  GE  G +++     +  P   + ++ R +       R G + +  R EV  
Sbjct: 54  ATLPVLSFTGEKVGEVTLDLK--SAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRG 111

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QK TG+AR  S+      GGG  FGP P      + +K + LA+  AL+    
Sbjct: 112 GGKKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTALASAAV 171

Query: 120 SNDIMVIDNLVSKE---CKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNIN 174
           + D  V++          KT+  V   +    D     +    + D N +L+ RNI ++ 
Sbjct: 172 AEDAFVVEEFDEAFASGPKTRDFVAALQRWGLDPKQKAMFFATEFDDNVRLSGRNIGSLK 231

Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +L  + +N+YDIL   KL  + +A++ L  R+
Sbjct: 232 MLTPRTLNLYDILDARKLFFTPAAVDYLNSRY 263


>gi|301168457|emb|CBW28047.1| 50S ribosomal protein L4 [Bacteriovorax marinus SJ]
          Length = 205

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 107/206 (51%), Gaps = 2/206 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N   E  G +S +  + +      ++ +V++     +R G + +K R +V+  
Sbjct: 1   MTDITVLNGKFETSGKLSTNVSLTSEDINVPVVHQVVKATLAGRRQGNACTKTRGQVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G+K + QKGTGRAR  S   S   GGG  FGP P      L KKV + A++  L+DK  +
Sbjct: 61  GAKPFKQKGTGRARQGSTRASIMVGGGTTFGPKPRSYDQKLNKKVAAKAIQSVLADKLQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+  S   KTK L T   +  L  A ++   + D     AA+N+     L V+G
Sbjct: 121 GKLTVVDSFDSN-GKTKELYTTLNSKGLLPA-LVVAEKKDSLAIRAAKNLQYGKGLAVEG 178

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
            +VY+ ++   LV+ K+A+EAL  R 
Sbjct: 179 FSVYEAVKYENLVIEKAALEALLGRL 204


>gi|11465779|ref|NP_053923.1| ribosomal protein L4 [Porphyra purpurea]
 gi|1710475|sp|P51313|RK4_PORPU RecName: Full=50S ribosomal protein L4, chloroplastic
 gi|1276779|gb|AAC08199.1| 50S ribosomal protein L4 [Porphyra purpurea]
          Length = 214

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 103/204 (50%), Gaps = 3/204 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
            V N +G+  G   ++  I +      ++ R L  QS  KR G + +K RSEV   G K 
Sbjct: 10  QVYNWEGQVSGNADLNLKI-SKDSGMYLVHRALVKQSNEKRQGSANTKTRSEVRGGGRKP 68

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     +RGGG  FGP P      + KK   LALR AL++K  +  ++
Sbjct: 69  WRQKGTGRARAGSIRSPLWRGGGVIFGPKPRSFAKKMNKKESQLALRTALNNKSVNTLVV 128

Query: 125 VIDNLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
              +   ++ KTK  +      +  L+  L++   + D N  L+ RN+ N+ ++    +N
Sbjct: 129 ENFDTYFQKPKTKLFIEAITRWNLDLNKKLLVIVDKKDLNVYLSIRNLYNVEIISADTLN 188

Query: 183 VYDILRCSKLVLSKSAIEALEDRF 206
           +  +L   K++++  A+  +++ +
Sbjct: 189 IMALLAAHKVIITVDALSKIQEVY 212


>gi|296120748|ref|YP_003628526.1| ribosomal protein L4/L1e [Planctomyces limnophilus DSM 3776]
 gi|296013088|gb|ADG66327.1| ribosomal protein L4/L1e [Planctomyces limnophilus DSM 3776]
          Length = 209

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           MI L +    GE  G          A    + +L   +       R G  KSK R+E+A 
Sbjct: 1   MISLPIHTSTGEATGRNYEFDPAELADSINKQLLHDAVVMYQANLRQGTFKSKSRAEIAG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           +  K++ QKGTGRAR  +K     RGGG AF   P    + LP+K   LA R AL  KF 
Sbjct: 61  SKQKLFKQKGTGRARQGNKRQPVRRGGGHAFAKRPTDFSYRLPRKALQLATRMALLGKFQ 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNA-LIIDGCQLDRNFQLAARNIPNINLLPV 178
            N++ +I++L  +  KTK + +    L L +   +I     D N   +ARNIP + + P 
Sbjct: 121 DNEVTIIESLALEAPKTKVVASLLNKLGLESKGCLISIPSHDSNVWKSARNIPKVGVSPA 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
            G+N Y +L   +LV++  A++ L
Sbjct: 181 AGLNAYQLLLRKQLVVTTDALDLL 204


>gi|224534698|ref|ZP_03675270.1| 50S ribosomal protein L4 [Borrelia spielmanii A14S]
 gi|224513946|gb|EEF84268.1| 50S ribosomal protein L4 [Borrelia spielmanii A14S]
          Length = 209

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++ G +++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIGTVNLDDRVFNIEVSHGSIYNAIKSELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTKRNPVWVGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120

Query: 122 -DIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
               V++N   +  KTK L    +     +  +++     D+  + A +NI ++ +L   
Sbjct: 121 SSFKVVENFNIESGKTKDLALIIKNFVSFNGKVVVLLGNDDQMIKRAGKNIRDLKILSFD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|206602676|gb|EDZ39157.1| Ribosomal protein L4 [Leptospirillum sp. Group II '5-way CG']
          Length = 218

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 4/203 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++ +  L GE    + ++      +     +L  +++ Q    R G + +K R EV+  
Sbjct: 1   MDIQMVTLKGETPKSLEINISAEEAELINVPLLHEIIQMQRAGIRSGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    Q+RGG   FGP P    +  P K   LA+++A+     +
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQWRGGAIIFGPRPRDYFYRQPAKKIVLAVKNAIFSHLEN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN---ALIIDGCQLDRNFQLAARNIPNINLLP 177
             + ++D+L     KTK L+  F    L      ++I    L  N   + RNIP + +L 
Sbjct: 121 KSLYLVDSLDIPSRKTKDLIALFNKWSLFPGEERILIIDNGLSENIYYSCRNIPGLEILL 180

Query: 178 VQGINVYDILRCSKLVLSKSAIE 200
              +N YD+L   K+++SK A E
Sbjct: 181 PHQVNPYDLLIADKVLVSKEAFE 203


>gi|218249414|ref|YP_002374989.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi ZS7]
 gi|224532481|ref|ZP_03673106.1| 50S ribosomal protein L4 [Borrelia burgdorferi WI91-23]
 gi|226321789|ref|ZP_03797315.1| 50S ribosomal protein L4 [Borrelia burgdorferi Bol26]
 gi|226730622|sp|B7J244|RL4_BORBZ RecName: Full=50S ribosomal protein L4
 gi|218164602|gb|ACK74663.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi ZS7]
 gi|224512553|gb|EEF82929.1| 50S ribosomal protein L4 [Borrelia burgdorferi WI91-23]
 gi|226232978|gb|EEH31731.1| 50S ribosomal protein L4 [Borrelia burgdorferi Bol26]
          Length = 209

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++ G I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N   VI+N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NSFKVIENFSVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|195437861|ref|XP_002066858.1| GK24328 [Drosophila willistoni]
 gi|194162943|gb|EDW77844.1| GK24328 [Drosophila willistoni]
          Length = 296

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+I +  D+FA +P+  I+   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 79  KVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHAKTRAEVRGGGRKPWPQKGQGR 138

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S     F+GGG   GP  P    + LP   R L L   LS K   +D+ +I++   
Sbjct: 139 ARHGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIESTDI 198

Query: 132 KECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
              + +++           +++I         N   A   +  +NL+P  G+NVY +L+ 
Sbjct: 199 PTTEPQFIKDLIDERQWGPSVLIVDKADIFPENICYATDELGFVNLMPTFGLNVYSMLKH 258

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+  A++ LE R 
Sbjct: 259 DTLVLTVDAVKHLEQRL 275


>gi|89898719|ref|YP_515829.1| 50S ribosomal protein L4 [Chlamydophila felis Fe/C-56]
 gi|109893585|sp|Q252V4|RL4_CHLFF RecName: Full=50S ribosomal protein L4
 gi|89332091|dbj|BAE81684.1| 50S ribosomal protein L4 [Chlamydophila felis Fe/C-56]
          Length = 224

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 14/215 (6%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M+ LS  +  G   G + + +  FA +     ++   +      KR   + ++ RSEV++
Sbjct: 1   MVLLSKFDFFGNKAGEVELPDAFFAQEGNGLQLVKDYIVAIRANKRQWSACTRNRSEVSH 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118
           +  K + QKGTG AR    +  QFRGGG  FGP P    H  + KK +  A+R  LS K 
Sbjct: 61  STKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKEKRAAIRLLLSQKI 120

Query: 119 CSNDIMVIDNLVSKE----CKTKYLVTRFRALDLSNALIIDGCQL-----DRNFQLAARN 169
            +N ++V D+ V  +     KTK  +   ++ ++    ++    L     +   +L+ RN
Sbjct: 121 QTNRLIVADDSVFTKSLTAPKTKEALRFLKSCNVECRGVLFIDDLNHAQNNEGLRLSLRN 180

Query: 170 IPNINLLPVQGINV--YDILRCSKLVLSKSAIEAL 202
           +P +      G+NV  YD++    +V+S+ A+  L
Sbjct: 181 LPAVR-GFAYGMNVNGYDLVSARNIVISEKALTGL 214


>gi|15594824|ref|NP_212613.1| 50S ribosomal protein L4 [Borrelia burgdorferi B31]
 gi|195941616|ref|ZP_03086998.1| 50S ribosomal protein L4 [Borrelia burgdorferi 80a]
 gi|216264894|ref|ZP_03436886.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi 156a]
 gi|221218083|ref|ZP_03589549.1| 50S ribosomal protein L4 [Borrelia burgdorferi 72a]
 gi|223888691|ref|ZP_03623282.1| 50S ribosomal protein L4 [Borrelia burgdorferi 64b]
 gi|224533597|ref|ZP_03674186.1| 50S ribosomal protein L4 [Borrelia burgdorferi CA-11.2a]
 gi|225548627|ref|ZP_03769674.1| 50S ribosomal protein L4 [Borrelia burgdorferi 94a]
 gi|225549551|ref|ZP_03770517.1| 50S ribosomal protein L4 [Borrelia burgdorferi 118a]
 gi|225552234|ref|ZP_03773174.1| 50S ribosomal protein L4 [Borrelia sp. SV1]
 gi|226321111|ref|ZP_03796653.1| 50S ribosomal protein L4 [Borrelia burgdorferi 29805]
 gi|3915828|sp|P94268|RL4_BORBU RecName: Full=50S ribosomal protein L4
 gi|2688412|gb|AAC66863.1| ribosomal protein L4 (rplD) [Borrelia burgdorferi B31]
 gi|215981367|gb|EEC22174.1| ribosomal protein L4/L1 family protein [Borrelia burgdorferi 156a]
 gi|221192031|gb|EEE18252.1| 50S ribosomal protein L4 [Borrelia burgdorferi 72a]
 gi|223885507|gb|EEF56606.1| 50S ribosomal protein L4 [Borrelia burgdorferi 64b]
 gi|224513270|gb|EEF83632.1| 50S ribosomal protein L4 [Borrelia burgdorferi CA-11.2a]
 gi|225369828|gb|EEG99275.1| 50S ribosomal protein L4 [Borrelia burgdorferi 118a]
 gi|225370657|gb|EEH00093.1| 50S ribosomal protein L4 [Borrelia burgdorferi 94a]
 gi|225371232|gb|EEH00662.1| 50S ribosomal protein L4 [Borrelia sp. SV1]
 gi|226233521|gb|EEH32260.1| 50S ribosomal protein L4 [Borrelia burgdorferi 29805]
 gi|312148420|gb|ADQ31079.1| ribosomal protein L4/L1 family [Borrelia burgdorferi JD1]
 gi|312149445|gb|ADQ29516.1| 50S ribosomal protein L4 [Borrelia burgdorferi N40]
          Length = 209

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++ G I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N   VI+N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NSFKVIENFNVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|261415818|ref|YP_003249501.1| ribosomal protein L4/L1e [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372274|gb|ACX75019.1| ribosomal protein L4/L1e [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326623|gb|ADL25824.1| ribosomal protein L4 [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 206

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 2/204 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    +    G+ K  I +   +F  +  +  +   ++      R G +++K + EV+  
Sbjct: 1   MASAKLFAATGDFKNDIQLP-ALFDQEVNKVCMYLHIKAILNNNRQGTAQTKSKGEVSGG 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR    + + +  G KA GP        + KKV+ +A   AL++K   
Sbjct: 60  GQKPWKQKGTGRARSGQNTSAVWVRGAKAHGPKSHDYFEKVNKKVKKIAFYSALANKASE 119

Query: 121 NDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             + V + L     KTK L++   ++      ++    + D+N  L++ NIP      V 
Sbjct: 120 GKVSVFEALSFSAPKTKDLLSVLAKSGIEQRNVLFIVSEKDQNLYLSSNNIPWCRCARVA 179

Query: 180 GINVYDILRCSKLVLSKSAIEALE 203
            +N YD++R + +V+S++A+  LE
Sbjct: 180 DVNTYDVVRANNVVISQAALAELE 203


>gi|226356896|ref|YP_002786636.1| 50S ribosomal protein L4 [Deinococcus deserti VCD115]
 gi|259491551|sp|C1CXG5|RL4_DEIDV RecName: Full=50S ribosomal protein L4
 gi|226318886|gb|ACO46882.1| putative 50S ribosomal protein L4 [Deinococcus deserti VCD115]
          Length = 201

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 7/204 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V   +G     + +       +    IL  V+ WQ   +R G + +K R++V+ +
Sbjct: 1   MAQINVIGKNGGRTIDLELP------EVNAAILHDVVTWQLASRRRGTASTKTRAQVSKS 54

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G KMY QKGTG ARH  + V  F GGG AFGP P    + LP+KVR L L  AL+D+   
Sbjct: 55  GKKMYSQKGTGNARHGDRGVPTFVGGGVAFGPKPRSYGYTLPRKVRQLGLAMALADRQDG 114

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++ +D       KTK  V+      L  +  +     D   + +ARN+    +LPV G
Sbjct: 115 GKLIAVDGFDLD-GKTKSFVSWAAQNGLDGSERVLIVTDDAQTRQSARNVAWATVLPVAG 173

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           +N YDILR  +LV+   A+E  ++
Sbjct: 174 LNAYDILRHDRLVIDAVALEPAQE 197


>gi|195034530|ref|XP_001988917.1| GH11428 [Drosophila grimshawi]
 gi|193904917|gb|EDW03784.1| GH11428 [Drosophila grimshawi]
          Length = 923

 Score =  149 bits (376), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G++ +  D+FA +P+  I+   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 706 KVGMMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGR 765

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S     F+GGG   GP  P    + LP   R L L   LS K   +D+ +I+N+  
Sbjct: 766 ARHGSIRSPLFKGGGIVHGPRSPTSHFYMLPFYTRVLGLTSTLSVKLAQDDLHIIENVEL 825

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                +++       +   +++I   Q     N   A  +I  +NL+P  G+NVY +L+ 
Sbjct: 826 PTRDAQFIRDLIAERNWGPSVLIIDKQEMFPENICYATDSIGYVNLMPSFGLNVYSMLKH 885

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+  A++ LE R 
Sbjct: 886 DTLVLTVEAVKHLEQRL 902


>gi|226501908|ref|NP_001149608.1| 50S ribosomal protein L4 [Zea mays]
 gi|195628460|gb|ACG36060.1| 50S ribosomal protein L4 [Zea mays]
          Length = 314

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 7/210 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
             L V +  GE  G +++     +  P   + ++ R +       R G + +  R EV  
Sbjct: 60  ATLPVLSFTGEKVGEVTLDLK--SAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRG 117

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QK TG+AR  S+      GGG  FGP P      + +K + LA+  A+     
Sbjct: 118 GGRKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAIVSAAK 177

Query: 120 SNDIMVIDNLVSKE-CKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
              ++           KT+  V   +    D     +      D N +L+ RNI ++ +L
Sbjct: 178 DAFVVEEFEEAFASGPKTRDFVAALQRWGLDPKQKAMFFATDFDDNVRLSGRNIGSLKML 237

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N+YDIL   KL  + +A++ L  R+
Sbjct: 238 TPRTLNLYDILDARKLFFTPAAVDYLNSRY 267


>gi|194707774|gb|ACF87971.1| unknown [Zea mays]
          Length = 314

 Score =  149 bits (376), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 7/210 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
             L V +  GE  G +++     +  P   + ++ R +       R G + +  R EV  
Sbjct: 60  ATLPVLSFTGEKVGEVTLDLK--SAPPSTARAVVHRAIITDRQNARRGTASTLTRGEVRG 117

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QK TG+AR  S+      GGG  FGP P      + +K + LA+  A+     
Sbjct: 118 GGRKPYQQKKTGKARRGSQRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAIVSAAK 177

Query: 120 SNDIMVIDNLVSKE-CKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
              ++           KT+  V   +    D     +      D N +L+ RNI ++ +L
Sbjct: 178 DAFVVEEFEEAFASGPKTRDFVAALQRWGLDPKQKAMFFATDFDDNVRLSGRNIGSLKML 237

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N+YDIL   KL  + +A++ L  R+
Sbjct: 238 TPRTLNLYDILDARKLFFTPAAVDYLNSRY 267


>gi|242014210|ref|XP_002427784.1| mitochondrial 50S ribosomal protein L4, putative [Pediculus humanus
           corporis]
 gi|212512253|gb|EEB15046.1| mitochondrial 50S ribosomal protein L4, putative [Pediculus humanus
           corporis]
          Length = 286

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 111/205 (54%), Gaps = 3/205 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           +V ++  + +G++ ++  IF   P+  ++   ++WQS   R+    +K R+E+  +G K 
Sbjct: 70  NVDSIKEQKRGLVQLNPSIFGTIPRLDLIYYNIKWQSLYSRVILYSAKTRAEMKGSGRKP 129

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKGTGRAR  S+   Q +GGG   GP  P      +P   +   L   LS K   ND+
Sbjct: 130 HPQKGTGRARLGSRRAPQVKGGGTCHGPRNPTSYYFRIPLYKKIHGLTSTLSAKLAQNDL 189

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGI 181
            V+DN+      ++Y++   +  +  ++++I      + RN  +A  +I  I L+PV G+
Sbjct: 190 HVVDNINIPTDDSQYMIDLMKERNWGSSVLIVDSDDIMPRNISIATDSIGYITLMPVYGL 249

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVY +L+   LVL+ SA++ LE++ 
Sbjct: 250 NVYGMLKHDTLVLTLSALDELENKL 274


>gi|297703540|ref|XP_002828694.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Pongo
           abelii]
          Length = 311

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 108/202 (53%), Gaps = 4/202 (1%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA+ P+  IL +V  WQ   KRI  +K+K R+EV   G K + QK
Sbjct: 72  FEQERVGLADLHPDVFAIAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQK 131

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           GTGRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 132 GTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKMALTVKLAQDDLHIMD 191

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVY 184
           +L       +YL          +++++      ++ ++   A   +   NL+P  G+NV+
Sbjct: 192 SLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVH 251

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+   +  LED+ 
Sbjct: 252 SMLKHQTLVLTLPTVAFLEDKL 273


>gi|21537296|gb|AAM61637.1| ribosomal protein L4 [Arabidopsis thaliana]
          Length = 282

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             L + + +GE  G   +          + ++ R +      KR G + +  R EV   G
Sbjct: 52  ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K Y QK TG AR  S+      GGG  FGP P      + +K + LA+  ALS    + 
Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171

Query: 121 -NDIMVIDN-LVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
              I+V +     ++ KTK  +   +    D     +     +D N   ++RNI  + +L
Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKPMFLMIDVDENVAKSSRNIGTLRML 231

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N++DIL   KLVL+ +A+E L  R+
Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261


>gi|255079010|ref|XP_002503085.1| predicted protein [Micromonas sp. RCC299]
 gi|226518351|gb|ACO64343.1| predicted protein [Micromonas sp. RCC299]
          Length = 276

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
            ++S  + DG   G  ++   +      +G++ + +       R G + +  +SEV   G
Sbjct: 62  AQVSKVSFDGASAGTATLDVKVAKPDVAKGLVHKYVVMVRQNARRGTASTLTKSEVRGGG 121

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTG AR  S       GGG  FGP P      + KK R LA+  A+     ++
Sbjct: 122 RKPFKQKGTGNARAGSSRTPLKPGGGVVFGPKPKDWSIKMNKKERRLAMATAIQSAAAAS 181

Query: 122 DIMVIDNLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            ++V+D+L     KTK + T  ++          I          L+ RN+  +    ++
Sbjct: 182 SMIVVDSLAGAAPKTKAMATALKSWGVAEGEKAYIITKDAPEGVTLSTRNMARVVQTDIK 241

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +NVYD+L   K+V+ +SA++ + D +
Sbjct: 242 HLNVYDVLNADKVVVEESALQYINDFY 268


>gi|206895650|ref|YP_002247333.1| ribosomal protein L4/L1 family [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738267|gb|ACI17345.1| ribosomal protein L4/L1 family [Coprothermobacter proteolyticus DSM
           5265]
          Length = 208

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 100/206 (48%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V +++G +     V+E++ A   +  +L   +      KR G + +K + EVA + 
Sbjct: 1   MQLPVFDVNGAEVAYEDVNENLVATPVRGRLLHLNVVRVLSGKRHGTASTKKQGEVAGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QK TGRARH       +R G  AFGP P      + KK   LA+      +  + 
Sbjct: 61  RKPWPQKHTGRARHGYMRSPIWRKGAVAFGPKPRDWTKDVNKKQVKLAMASCFGYRLKNG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++++ID       KT+      R+  L    + +     ++  + A +N+ N+  +PV+ 
Sbjct: 121 ELLLIDANSFN-GKTREFKAFLRSKQLDEKRVTVVSLAGEQGVRRACQNLENVYYVPVEK 179

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N YD+L+   +++++SA    ++ +
Sbjct: 180 VNAYDLLKGDAVIMTQSAWVRAQEVW 205


>gi|125986720|ref|XP_001357123.1| GA19152 [Drosophila pseudoobscura pseudoobscura]
 gi|195160102|ref|XP_002020915.1| GL14082 [Drosophila persimilis]
 gi|54645450|gb|EAL34189.1| GA19152 [Drosophila pseudoobscura pseudoobscura]
 gi|194117865|gb|EDW39908.1| GL14082 [Drosophila persimilis]
          Length = 293

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 3/197 (1%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
             G+I +  D+FA +P+  ++   + WQ   + +  + +K R+EV   G K + QKG GR
Sbjct: 76  KMGLIELHPDVFAAQPRVDVIQENIEWQRKYRYVSLAHAKTRAEVRGGGRKPWPQKGMGR 135

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH S     F+GGG   GP  P    + LP   R + L   LS K   +D+ VI+N+  
Sbjct: 136 ARHGSIRSPLFKGGGVIHGPRSPTTHFYMLPFYKRVMGLTSTLSVKLAQDDLHVIENVDI 195

Query: 132 KECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                +++       +   +++I   +     N   A  ++  +NL+P  G+NVY +L+ 
Sbjct: 196 PTRDAQFIKDLIAERNWGPSVLIVDKEYMFPENICYATDDLGYVNLMPAFGLNVYSMLKH 255

Query: 190 SKLVLSKSAIEALEDRF 206
             LVL+  A++ LE R 
Sbjct: 256 DTLVLTVDAVKHLEQRL 272


>gi|79317138|ref|NP_001030985.1| RPL4; poly(U) binding / structural constituent of ribosome
           [Arabidopsis thaliana]
 gi|79317147|ref|NP_001030986.1| RPL4; poly(U) binding / structural constituent of ribosome
           [Arabidopsis thaliana]
 gi|8778555|gb|AAF79563.1|AC022464_21 F22G5.34 [Arabidopsis thaliana]
 gi|222423413|dbj|BAH19678.1| AT1G07320 [Arabidopsis thaliana]
 gi|332189987|gb|AEE28108.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
 gi|332189988|gb|AEE28109.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
          Length = 278

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             L + + +GE  G   +          + ++ R +      KR G + +  R EV   G
Sbjct: 52  ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K Y QK TG AR  S+      GGG  FGP P      + +K + LA+  ALS    + 
Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171

Query: 121 -NDIMVIDN-LVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
              I+V +     ++ KTK  +   +    D     +     +D N   ++RNI  + +L
Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N++DIL   KLVL+ +A+E L  R+
Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261


>gi|30680078|ref|NP_849604.1| RPL4; poly(U) binding / structural constituent of ribosome
           [Arabidopsis thaliana]
 gi|332189986|gb|AEE28107.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
          Length = 280

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             L + + +GE  G   +          + ++ R +      KR G + +  R EV   G
Sbjct: 52  ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K Y QK TG AR  S+      GGG  FGP P      + +K + LA+  ALS    + 
Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171

Query: 121 -NDIMVIDN-LVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
              I+V +     ++ KTK  +   +    D     +     +D N   ++RNI  + +L
Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N++DIL   KLVL+ +A+E L  R+
Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261


>gi|18390754|ref|NP_563786.1| RPL4; poly(U) binding / structural constituent of ribosome
           [Arabidopsis thaliana]
 gi|21542429|sp|O50061|RK4_ARATH RecName: Full=50S ribosomal protein L4, chloroplastic; AltName:
           Full=CL4; AltName: Full=R-protein L4; Flags: Precursor
 gi|17380866|gb|AAL36245.1| unknown protein [Arabidopsis thaliana]
 gi|21436209|gb|AAM51392.1| unknown protein [Arabidopsis thaliana]
 gi|110741117|dbj|BAE98652.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189985|gb|AEE28106.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
          Length = 282

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             L + + +GE  G   +          + ++ R +      KR G + +  R EV   G
Sbjct: 52  ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K Y QK TG AR  S+      GGG  FGP P      + +K + LA+  ALS    + 
Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171

Query: 121 -NDIMVIDN-LVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
              I+V +     ++ KTK  +   +    D     +     +D N   ++RNI  + +L
Sbjct: 172 GGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N++DIL   KLVL+ +A+E L  R+
Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261


>gi|329942412|ref|ZP_08291222.1| ribosomal L4/L1 family protein [Chlamydophila psittaci Cal10]
 gi|154795763|gb|ABS86878.1| ribosomal protein L4 [Chlamydophila psittaci 6BC]
 gi|313847649|emb|CBY16637.1| putative 50S ribosomal protein l4 [Chlamydophila psittaci RD1]
 gi|325507320|gb|ADZ18958.1| 50S ribosomal protein L4 [Chlamydophila psittaci 6BC]
 gi|328815322|gb|EGF85310.1| ribosomal L4/L1 family protein [Chlamydophila psittaci Cal10]
 gi|328914286|gb|AEB55119.1| ribosomal protein L4/L1 family [Chlamydophila psittaci 6BC]
          Length = 224

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M+ LS  +  G   G + + +  FA +     ++   L      KR   + ++ RSEV++
Sbjct: 1   MVLLSKFDFFGNKAGEVELPDSFFAQEGSGLQLVKDYLVAIRANKRQWSACTRNRSEVSH 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118
           +  K + QKGTG AR    +  QFRGGG  FGP P    H  + +K +  A+R  LS K 
Sbjct: 61  STKKPFRQKGTGNARQGCLASPQFRGGGIVFGPKPKFDQHVRINRKEKRAAIRLLLSQKI 120

Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALI-----IDGCQLDRNFQLAARN 169
            +N ++V D+ V        KTK  +   ++ ++    +     ++  Q + + +L+ RN
Sbjct: 121 QTNRLIVADDSVFTNSLTSPKTKEALRFLKSCNVECRGVLFIDDLEHAQNNESLRLSLRN 180

Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEAL 202
           +P +        IN YD++    +V+S+ A+  L
Sbjct: 181 LPAVRGFTYGMNINGYDLVSARNIVISEKALNRL 214


>gi|149198923|ref|ZP_01875964.1| 50S ribosomal protein L4 [Lentisphaera araneosa HTCC2155]
 gi|149137918|gb|EDM26330.1| 50S ribosomal protein L4 [Lentisphaera araneosa HTCC2155]
          Length = 215

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 107/210 (50%), Gaps = 5/210 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++  +  G+  G + ++      +  +  +   +       R G + +K RSE    
Sbjct: 1   MTKVNTVDSKGQASGELEINSKWLEFEKGEQAVHESVVAFLASLRSGSANTKTRSEKRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTG AR  S     + GGG AFGP P      + KKVR LA+R AL+++  +
Sbjct: 61  GRKPWRQKGTGNARAGSTRSPIWTGGGVAFGPKPRSYAKNVNKKVRRLAVRRALAERIQA 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALII----DGCQLDRNFQLAARNIPNIN-L 175
            +++V+D+   ++  TK  +    +++ ++  +I    D  +   N +  A++  N++ +
Sbjct: 121 EELIVVDSFAFEKPSTKTAIAFLESVNAADRPVIILSDDLTENIENLENTAKSFNNVSLV 180

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDR 205
           +    +N YDIL   K++++K+A+E +  R
Sbjct: 181 MTASEVNAYDILSGKKVIITKAALEQVGQR 210


>gi|289742297|gb|ADD19896.1| mitochondrial ribosomal protein L4 [Glossina morsitans morsitans]
          Length = 301

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 103/205 (50%), Gaps = 3/205 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++ ++     G+I +  D+FA +P+  ++   + WQ   + +  + SK R+EV   G K 
Sbjct: 76  NIDDVQERKLGIIELHPDVFATQPRVDVIHENIEWQRKYRFVSFAHSKTRAEVRGGGRKP 135

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKGTGRARH S     FRGGG+A GP  P    + LP   R + L   LS K   +D+
Sbjct: 136 WPQKGTGRARHGSIRSPLFRGGGRAHGPRSPTTHFYMLPFFKRVMGLTATLSVKLAQDDL 195

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGI 181
            +I ++       ++L       +   +++I   +     N   A   +  +NL+P   +
Sbjct: 196 HIIKDVEIPSGDHQFLKDLIIERNWGPSVLIVDKEDIFPENICEATDKLGYVNLMPAYSL 255

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N Y +L+   LVL+ +A++ +E+R 
Sbjct: 256 NTYSMLKHDTLVLTINAVKHIEERL 280


>gi|291296990|ref|YP_003508388.1| 50S ribosomal protein L4/L1e [Meiothermus ruber DSM 1279]
 gi|290471949|gb|ADD29368.1| ribosomal protein L4/L1e [Meiothermus ruber DSM 1279]
          Length = 206

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 8/206 (3%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V   +       ++ E +     +  +L  V+RWQ   +R G + +K R  V +T
Sbjct: 1   MYNLPVLGSN--KTVEAALPEKV-----KSHVLYEVVRWQLASRRRGTAATKTRGMVNFT 53

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             KMY QK TGRARH       F GGG  FGP P    + LPKKVR L L  AL+D+   
Sbjct: 54  TKKMYAQKHTGRARHGDYGAPIFVGGGTVFGPQPRDYSYTLPKKVRKLGLAMALADRAKE 113

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
               ++++      KTK  V   +A +L     I     D     AARN+P + +L  +G
Sbjct: 114 GKFFLVEDFKGVNGKTKEFVAWLKAHNLEG-PSILLVTSDEKVARAARNLPKVRVLAPEG 172

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYDI+R   LV+  SA E ++ + 
Sbjct: 173 LNVYDIMRQEALVMEASAWEGVQAKL 198


>gi|218192491|gb|EEC74918.1| hypothetical protein OsI_10864 [Oryza sativa Indica Group]
          Length = 324

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 9/212 (4%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
             L V +  GE  G +++     +  P   + ++ R +      KR G + +  R EV  
Sbjct: 66  ATLPVLSFTGEKVGEVALDLK--SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRG 123

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QK TG+AR  S       GGG  FGP P      + +K + LA+  AL+    
Sbjct: 124 GGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAV 183

Query: 120 SNDIMVIDNLVSKE---CKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNIN 174
           ++D  V++    +     KT+  V   +    D     +        N +L+ RNI ++ 
Sbjct: 184 ADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLK 243

Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +L  + +N+YDIL   KL  + +AI  L  R+
Sbjct: 244 MLTPRTLNLYDILDARKLFFTPAAINYLNSRY 275


>gi|115452095|ref|NP_001049648.1| Os03g0265400 [Oryza sativa Japonica Group]
 gi|108707338|gb|ABF95133.1| 50S ribosomal protein L4, chloroplast precursor, putative,
           expressed [Oryza sativa Japonica Group]
 gi|113548119|dbj|BAF11562.1| Os03g0265400 [Oryza sativa Japonica Group]
 gi|215678998|dbj|BAG96428.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215692528|dbj|BAG87948.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737540|dbj|BAG96670.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 323

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 9/212 (4%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
             L V +  GE  G +++     +  P   + ++ R +      KR G + +  R EV  
Sbjct: 65  ATLPVLSFTGEKVGEVALDLK--SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRG 122

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QK TG+AR  S       GGG  FGP P      + +K + LA+  AL+    
Sbjct: 123 GGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAV 182

Query: 120 SNDIMVIDNLVSKE---CKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNIN 174
           ++D  V++    +     KT+  V   +    D     +        N +L+ RNI ++ 
Sbjct: 183 ADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLK 242

Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +L  + +N+YDIL   KL  + +AI  L  R+
Sbjct: 243 MLTPRTLNLYDILDARKLFFTPAAINYLNSRY 274


>gi|29893583|gb|AAP06837.1| unknown protein [Oryza sativa Japonica Group]
          Length = 426

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 9/212 (4%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
             L V +  GE  G +++     +  P   + ++ R +      KR G + +  R EV  
Sbjct: 65  ATLPVLSFTGEKVGEVALDLK--SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRG 122

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QK TG+AR  S       GGG  FGP P      + +K + LA+  AL+    
Sbjct: 123 GGRKPYQQKKTGKARRGSMRTPLRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAV 182

Query: 120 SNDIMVIDNLVSKE---CKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNIN 174
           ++D  V++    +     KT+  V   +    D     +        N +L+ RNI ++ 
Sbjct: 183 ADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLK 242

Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +L  + +N+YDIL   KL  + +AI  L  R+
Sbjct: 243 MLTPRTLNLYDILDARKLFFTPAAINYLNSRY 274


>gi|326436109|gb|EGD81679.1| hypothetical protein PTSG_02393 [Salpingoeca sp. ATCC 50818]
          Length = 243

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 11/193 (5%)

Query: 14  KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73
            G++ +   +F    ++ IL RV+ +Q    R G +K+K RSEV   G K + QKGTGRA
Sbjct: 37  VGMMELDPTVFGEDLRKDILQRVVVFQRASWRAGTAKTKTRSEVRGGGKKPWQQKGTGRA 96

Query: 74  RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133
           R SS     FRGGG   GP P      LPKKV+ + +R ALS K   ND++++D+L    
Sbjct: 97  RASSIRSPLFRGGGTVHGPTPKDWSIKLPKKVQRMGVRVALSAKLAQNDLLIVDSLNLPS 156

Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193
              + L+                  L  N   AA  + ++ ++P + INVYD+L    L+
Sbjct: 157 SNEEDLLEAL-----------FSNSLPPNLSAAAEGLDDVTVMPQRDINVYDMLNHPTLI 205

Query: 194 LSKSAIEALEDRF 206
           +S  A+  +E   
Sbjct: 206 MSMDAVREVEQWL 218


>gi|2791998|emb|CAA74895.1| ribosomal protein L4 [Arabidopsis thaliana]
 gi|2792000|emb|CAA74894.1| ribosomal protein L4 [Arabidopsis thaliana]
          Length = 282

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 5/210 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             L + + +GE  G   +          + ++ R +      KR G + +  R EV   G
Sbjct: 52  ATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGG 111

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K Y QK TG AR  S+      GGG  FGP P      + +K + LA+  ALS    + 
Sbjct: 112 IKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAE 171

Query: 121 -NDIMVIDN-LVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLL 176
              I+V +     ++ KTK L+   +    D     +     +D N   ++RNI  + +L
Sbjct: 172 GGAIVVEEFGEKFEKPKTKDLLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRML 231

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N++DIL   KLVL+ +A+E L  R+
Sbjct: 232 TPRTLNLFDILNADKLVLTPAAVEFLNARY 261


>gi|111115308|ref|YP_709926.1| 50S ribosomal protein L4 [Borrelia afzelii PKo]
 gi|123145710|sp|Q0SN28|RL4_BORAP RecName: Full=50S ribosomal protein L4
 gi|110890582|gb|ABH01750.1| ribosomal protein L4 [Borrelia afzelii PKo]
          Length = 209

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++   I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K + QKGTGRAR  ++    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTRRNPVWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRASDE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+  VI+N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|307104743|gb|EFN52995.1| hypothetical protein CHLNCDRAFT_49059 [Chlorella variabilis]
          Length = 222

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 4/206 (1%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           L V+ LDG D G   S+S  +       G++ R L       R G + +  RSEV   G 
Sbjct: 13  LPVKKLDGSDVGSSASISLRVADEDTANGLVHRYLVMVRQNARQGNASTLTRSEVRGGGR 72

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKG+G AR  S+      GGG +FGP P     ++ KK R LA   AL     ++ 
Sbjct: 73  KPYKQKGSGNARRGSRRSPLMPGGGISFGPKPRDWSISMNKKERKLACATALQS-AAADM 131

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           ++  D    +   TK LV    A+ +     +++   + +    L+ RN+P + +     
Sbjct: 132 LVCDDFGALEAVSTKGLVASLAAMGVQEGEKVLLVVNEANEKLYLSGRNLPTLAINTANA 191

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           + VYD+L   ++V+ +SA+  L + F
Sbjct: 192 VQVYDVLNADRIVVEQSALAYLNEWF 217


>gi|290984683|ref|XP_002675056.1| ribosomal protein L4/L1e [Naegleria gruberi]
 gi|284088650|gb|EFC42312.1| ribosomal protein L4/L1e [Naegleria gruberi]
          Length = 332

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 116/214 (54%), Gaps = 13/214 (6%)

Query: 6   VRNLD-GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           V+NL  GE   +I++    F   P++ IL  +++WQ  ++R G  K+K R E AY   K 
Sbjct: 110 VKNLKTGEFTEMINLHPYFFNCTPRKDILYLMVKWQLAKRRQGTHKTKYRLETAYCKQKQ 169

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
             QKG G ARHS +   Q+RGGG A    P    + L KK+R LALR AL+ K+    ++
Sbjct: 170 TPQKGRGAARHSDRGAPQYRGGGHAMALRPRSYEYNLNKKIRRLALRMALTTKYQQGKLI 229

Query: 125 VIDNLVSKECKTKYLV------------TRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172
           ++D+      KTKY+             T  + +     L+IDG Q++ NF+    N+  
Sbjct: 230 IVDDFSIDTFKTKYVAGLISNTVFPDSETHEKEIKDRGVLLIDGEQVNANFERGVFNLHY 289

Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            + L + G+NVYD+LR  K+V+SKS +E L  ++
Sbjct: 290 ADYLSIDGLNVYDMLRREKVVISKSGLETLTKKY 323


>gi|170085109|ref|XP_001873778.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651330|gb|EDR15570.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 253

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 1/192 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +   +F    ++ +L   +       R G + +K R EV  +G+K++ QKGTGRAR  
Sbjct: 42  VVLDPTVFNHPIRRDVLHLCVTHYLDSLRQGSANTKTRGEVRGSGAKLHRQKGTGRARVG 101

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
                   GGG AFGP P      LP+KV  + +R ALS K     + ++ +L     KT
Sbjct: 102 DGQSPIRVGGGVAFGPKPRDFSTKLPRKVIEMGMRVALSVKMKERQVGIMASLDWPNAKT 161

Query: 137 KYLVTRFRALDLSNALIIDGCQ-LDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           + LV +   L L   L + G   +    + A  NIP + ++    +NVY+I++  +LVL 
Sbjct: 162 RNLVQKIDLLGLRKTLFVTGEGVVPAGLKQAMANIPLVQVITADEVNVYEIMKWQRLVLD 221

Query: 196 KSAIEALEDRFK 207
             A+E  E   K
Sbjct: 222 VKAVEFFERTLK 233


>gi|22547136|ref|NP_057040.2| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
 gi|22547138|ref|NP_666499.1| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
 gi|74733471|sp|Q9BYD3|RM04_HUMAN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
           Short=MRP-L4
 gi|13559361|dbj|BAB40840.1| mitochondrial ribosomal protein L4 (L4mt) [Homo sapiens]
 gi|14602670|gb|AAH09858.1| Mitochondrial ribosomal protein L4 [Homo sapiens]
 gi|119604489|gb|EAW84083.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens]
 gi|119604490|gb|EAW84084.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens]
          Length = 311

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 68/202 (33%), Positives = 107/202 (52%), Gaps = 4/202 (1%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+EV   G K + QK
Sbjct: 72  FEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQK 131

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           GTGRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 132 GTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMD 191

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVY 184
           +L       +YL          +++++      ++ ++   A   +   NL+P  G+NV+
Sbjct: 192 SLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVH 251

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+   +  LED+ 
Sbjct: 252 SMLKHQTLVLTLPTVAFLEDKL 273


>gi|251772491|gb|EES53057.1| Ribosomal protein L4 [Leptospirillum ferrodiazotrophum]
          Length = 210

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 3/209 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           + + V + DG+    IS+  ++       GI+  +   +    R G S +K R EV+  G
Sbjct: 1   MNIPVLSSDGKSSSTISIDSEVTQDSFNNGIVHEITTMELAGMRAGTSSTKTRGEVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTGRAR  S    Q+RGG   FGP P    +  P K    ALR AL  +   N
Sbjct: 61  KKPYRQKGTGRARQGSSRAPQWRGGAIIFGPRPRNYFYKQPSKKVLKALREALLVRVSEN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            + +I NL S+  KTK  V   +          ++I   +LD N  L++RNIP + +LP 
Sbjct: 121 KVSIIPNLESETLKTKKFVDLLKKYHTNPGYQNILIISEELDENTWLSSRNIPGLTILPS 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRFK 207
             +    ++    +++++ + E L+   K
Sbjct: 181 TAVTALYMVFTDVVLVAEDSREWLQQLLK 209


>gi|58427799|gb|AAW76836.1| 50S ribosomal protein L4 [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 184

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 1/183 (0%)

Query: 24  FALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQF 83
           F  +  + ++ +V+       R G    K RSEVA   +K   ++  G ARH + +   F
Sbjct: 2   FGREFSEDLVHQVVVAYRNAGRAGTKAQKTRSEVA-GTTKKSKKQKGGGARHGALTAPIF 60

Query: 84  RGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRF 143
            GGG  F   P      + +K+   A+    S+      +M++D    +  KTK L+ + 
Sbjct: 61  VGGGVTFAAKPRSFEQKVNRKMYRAAICAIFSELNRQGRLMIVDAFDLEATKTKDLIEKL 120

Query: 144 RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALE 203
           + LD+    +I   +   +  L+ARN+P + +  VQG++   ++    +V++  A++ +E
Sbjct: 121 KGLDVGKRPLIVTEEASEHLYLSARNLPYVQVRDVQGLDPVALVGADTVVITADAVKKVE 180

Query: 204 DRF 206
           +  
Sbjct: 181 EWL 183


>gi|1685372|gb|AAB36823.1| ribosomal protein L4 [Borrelia burgdorferi]
          Length = 209

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++ G I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIGTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K +  KGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKHKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKKLAFKSVLSLRAADE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N   VI+N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NSFKVIENFSVESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|222624621|gb|EEE58753.1| hypothetical protein OsJ_10246 [Oryza sativa Japonica Group]
          Length = 323

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 94/212 (44%), Gaps = 9/212 (4%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
             L V +  GE  G +++     +  P   + ++ R +      KR G + +  R EV  
Sbjct: 65  ATLPVLSFTGEKVGEVALDLK--SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRG 122

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G K Y QK TG+AR  S       GGG  FGP P      + +K + LA+  AL+    
Sbjct: 123 GGRKPYQQKKTGKARRGSMRTPVRPGGGVIFGPKPRDWSIKINRKEKRLAISTALASAAV 182

Query: 120 SNDIMVIDNLVSKE---CKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNIN 174
           ++D  V++    +     KT+  V   +    D     +        N +L+ RNI ++ 
Sbjct: 183 ADDAFVVEEFDEEFAAGPKTRDFVAALQRWGLDPKEKAMFFATDFADNVRLSGRNIGSLK 242

Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +L  + +N+YDIL   KL  + +AI  L  R+
Sbjct: 243 MLTPRTLNLYDILDARKLFFTPAAINYLNSRY 274


>gi|183221346|ref|YP_001839342.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911439|ref|YP_001962994.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|226730680|sp|B0SAF3|RL4_LEPBA RecName: Full=50S ribosomal protein L4
 gi|226730681|sp|B0SSH6|RL4_LEPBP RecName: Full=50S ribosomal protein L4
 gi|167776115|gb|ABZ94416.1| 50S Ribosomal protein L4 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779768|gb|ABZ98066.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 211

 Score =  147 bits (371), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++    N +G     + +  ++FA     G +   ++ ++   R G   +K RSEV   G
Sbjct: 1   MKARKYNKEGVFVSEVELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     F GGG   GP P      L + V+  A+   L+ K   N
Sbjct: 61  IKPWAQKGTGRARQGSIRAPHFVGGGIIHGPKPRDYSSNLSRSVKKKAVLSILNKKAEEN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQ 179
            I +I+++      TK +    + +D++    +       ++  + + RNI N+  +  +
Sbjct: 121 RIAIIEDVEPSSYSTKSIYNILKNMDIAEKGNVGFVVAGENQFLKKSTRNIENLKYVNSK 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +   DIL  + LV+S+SA++ L+ ++
Sbjct: 181 RVVCRDILYNNNLVISESALKELQAQY 207


>gi|254995178|ref|ZP_05277368.1| 50S ribosomal protein L4 [Anaplasma marginale str. Mississippi]
 gi|255003352|ref|ZP_05278316.1| 50S ribosomal protein L4 [Anaplasma marginale str. Puerto Rico]
 gi|255004476|ref|ZP_05279277.1| 50S ribosomal protein L4 [Anaplasma marginale str. Virginia]
          Length = 178

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 64/175 (36%), Positives = 93/175 (53%)

Query: 32  ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
           +L  V+ WQ  ++R G  K++  S+V+ T +K Y QK TGRAR  S    QFRGG   FG
Sbjct: 1   MLRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRARQGSLRSPQFRGGAVVFG 60

Query: 92  PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA 151
           PV     ++L KKVR L L+ ALS K   + ++V+D+      KT      F       +
Sbjct: 61  PVNRSHAYSLNKKVRRLGLKVALSMKVSDSKLVVLDDSGLLLEKTADAHVAFGNFGAHGS 120

Query: 152 LIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            ++     +     A RN+PN++LL   GINV DILR   ++L+   ++ LE R 
Sbjct: 121 YLVVAETYEDKVMCACRNLPNVDLLKYAGINVLDILRHDCVILTVGTVKCLESRL 175


>gi|29839862|ref|NP_828968.1| 50S ribosomal protein L4 [Chlamydophila caviae GPIC]
 gi|46577224|sp|Q824Q0|RL4_CHLCV RecName: Full=50S ribosomal protein L4
 gi|29834209|gb|AAP04846.1| ribosomal protein L4 [Chlamydophila caviae GPIC]
          Length = 224

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 12/214 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M+ LS  +  G   G + + +  F  +     ++   L      KR   + ++ RSEV++
Sbjct: 1   MVLLSKFDFSGNKAGEVELPDAFFVQEGNGLQLVKDYLVAIRANKRQWSACTRNRSEVSH 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118
           +  K + QKGTG AR    +  QFRGGG  FGP P    H  + +K +  A+R  LS K 
Sbjct: 61  STKKPFKQKGTGNARQGCLASPQFRGGGVVFGPKPKFDQHVRINRKEKRAAIRLLLSQKI 120

Query: 119 CSNDIMVIDNLVSK----ECKTKYLVTRFRALDLSNALIIDGCQLD-----RNFQLAARN 169
            +N ++V D+ V        KTK  +   ++ ++    I+    LD        +L+ RN
Sbjct: 121 QTNRLIVADDSVFTSSLASPKTKEALRFLKSCNVECRGILFIDDLDHAQNNEGLRLSLRN 180

Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEAL 202
           +  +        IN YD+     +V+S+ A++ L
Sbjct: 181 LSAVRGFTYGMNINGYDLASARNVVISEKALKGL 214


>gi|157108533|ref|XP_001650271.1| 50S ribosomal protein L4 [Aedes aegypti]
 gi|108884031|gb|EAT48256.1| 50S ribosomal protein L4 [Aedes aegypti]
          Length = 279

 Score =  147 bits (371), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 3/205 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++  ++ +  G+  +S ++F   P+  I+ + + WQ   + +  S SK R+EV   G K 
Sbjct: 55  NLDTIEEQKLGIQQLSSEVFGAAPRIDIVHQNIEWQRKYRFVSFSHSKTRNEVRGGGRKP 114

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKG GRARH S     +RGGG A GP  P    + LP   R L L   LS K   +D+
Sbjct: 115 WPQKGLGRARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFSRVLGLVSTLSIKLAQDDL 174

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGI 181
            ++ +L       +YL    +      +++       + RN    A  I +INL+PV G+
Sbjct: 175 HIVRDLDIPTEDPQYLRDLVQERAWGPSVLFIDSSDIMPRNISAGADEIDHINLMPVYGL 234

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           NVY +L+   LVL+KSA E +E + 
Sbjct: 235 NVYSMLKHDTLVLTKSAAEEIESKL 259


>gi|320165535|gb|EFW42434.1| ribosomal protein L4/L1e [Capsaspora owczarzaki ATCC 30864]
          Length = 542

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 1/190 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           +S+S+ +F   P+  ++ R + W    +R G + +K ++EV   G K   QK TGRAR  
Sbjct: 238 MSLSDYVFGAAPRTDLIHRYVLWHLACQRAGTASTKTKAEVRGGGRKPRPQKHTGRARLG 297

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
           S      RGGG AFGP P    + LPK VR  ALR ALS K+   D+ ++D+L     K 
Sbjct: 298 SIRSPMMRGGGVAFGPKPKSFAYVLPKTVRRFALRAALSIKYAQGDLQIVDSLSPIVHKA 357

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           KY+    R+ +L+NAL++D        + A+  +  +  + V  ++VYDI++ SKLVL+ 
Sbjct: 358 KYVGHILRSNNLTNALLVDEKASPNLIRGAS-TMQTVKAVSVDALSVYDIMKYSKLVLTT 416

Query: 197 SAIEALEDRF 206
            A+ ALED  
Sbjct: 417 KAVAALEDFL 426


>gi|216263708|ref|ZP_03435703.1| ribosomal protein L4/L1 family protein [Borrelia afzelii ACA-1]
 gi|215980552|gb|EEC21373.1| ribosomal protein L4/L1 family protein [Borrelia afzelii ACA-1]
          Length = 209

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++   I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRASDE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+  VI+N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASFNGKVVILLGNDDQMIKRAGKNIRDLKILSFD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|225158912|ref|ZP_03725226.1| ribosomal protein L4/L1e [Opitutaceae bacterium TAV2]
 gi|224802530|gb|EEG20788.1| ribosomal protein L4/L1e [Opitutaceae bacterium TAV2]
          Length = 214

 Score =  147 bits (370), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 4/208 (1%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIF---ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57
           ++L V + DG        +    F     +     L   +      +R G   +K R EV
Sbjct: 1   MKLKVFSSDGTTSREQEFAGLPTFEGDNAEKGMQALKETIVAIRANQRQGTRSTKTRGEV 60

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117
              G K + QKGTGRAR  S     + GGG  FGP P      +  KV++LA   AL ++
Sbjct: 61  RGGGKKPWRQKGTGRARAGSTRSPLWVGGGVVFGPRPRDFSKKVNAKVKALAFSRALFER 120

Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             + +I+ ID     + KTK +      +      +I           AARNI  ++L  
Sbjct: 121 ASAGEILAIDAWQVAQAKTKAINEIIGRIAPKGRTLIVDATFSAEAARAARNIERVSLQE 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDR 205
              +NV D+ +  ++++S  A+E +  R
Sbjct: 181 AANLNVVDLAQYKQIIVSTQALEKIIAR 208


>gi|224532312|ref|ZP_03672944.1| 50S ribosomal protein L4 [Borrelia valaisiana VS116]
 gi|224511777|gb|EEF82183.1| 50S ribosomal protein L4 [Borrelia valaisiana VS116]
          Length = 209

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++   I++ + +F ++   G +   ++ +    R+G S +K RSEV  + 
Sbjct: 1   MERKVFSKDGKEIRTINLDDRVFNIEISHGSIYNAIKNELSNLRVGTSSTKTRSEVKGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS- 120
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA +  LS +    
Sbjct: 61  KKPWKQKGTGRARVGTKRNPIWIGGGIALGPKPRDYSYRLPKKVKRLAFKSVLSLRAADE 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N+  VI+N   +  KTK L    +     +  ++I     D+  + A +NI ++ +L   
Sbjct: 121 NNFKVIENFNIESGKTKDLALIIKNFASLNGKVVILLGNDDQMIKRAGKNIRDLKVLSFD 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 181 KLRVVDLFYAKNLIALESAVNKLNEFY 207


>gi|294055220|ref|YP_003548878.1| ribosomal protein L4/L1e [Coraliomargarita akajimensis DSM 45221]
 gi|293614553|gb|ADE54708.1| ribosomal protein L4/L1e [Coraliomargarita akajimensis DSM 45221]
          Length = 212

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 2/206 (0%)

Query: 2   IELSVRNLDGEDKGVISVSE-DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L V   DG        +    F        L +V+       R G + +K R+EV  +
Sbjct: 1   MKLKVYTADGTKSEEKDFATFPTFEGDKGVAALRQVVIAHRANARQGTASTKTRAEVRGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K++ QKG+G AR   + V   R GG A GP P      +  K++SLA + AL ++   
Sbjct: 61  GKKLFRQKGSGTARQGDRRVPHQRHGGVAHGPKPRDYSQKINSKMKSLAFQRALFERASD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             + VI+ L  KE KTK   +   ++      ++I     + N  LAARNI  ++L    
Sbjct: 121 GGLAVIEALEVKEPKTKLFNSVLNSVLPERGRVLIIDDNFESNAALAARNIDGVSLAEAC 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205
            ++  D+++   +++S+  IE +  R
Sbjct: 181 NLSTLDVVQYRNIIVSEKGIETILAR 206


>gi|187918345|ref|YP_001883908.1| 50S ribosomal protein L4 [Borrelia hermsii DAH]
 gi|119861193|gb|AAX16988.1| LSU ribosomal protein L1E [Borrelia hermsii DAH]
          Length = 222

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++   I + + +F +    G +   +  +    R+G + +K RSEV  + 
Sbjct: 14  MERKVFSKDGQELRTIDLEDRVFNIDISYGSIYNAINNELANLRVGTASTKTRSEVRGSS 73

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120
            K + QKGTGRAR  +K    + GGG A GP P    + LP+KV+ LA R  LS      
Sbjct: 74  KKPWKQKGTGRARVGTKRNPIWVGGGIALGPKPRDYSYKLPRKVKRLAFRSVLSLCASAE 133

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + + +++N   +  KT+ L +  +    ++   +I     D+  + A RNI ++ +L   
Sbjct: 134 DRLKIVENFTIESGKTRELASIMKHFVKINGKTVILLGNDDQMVKRAGRNIRDLKILSFN 193

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SA+  L + +
Sbjct: 194 RLRVVDLFYAKNLIALESAVNGLNELY 220


>gi|87248365|gb|ABD36235.1| ribosomal protein L4 [Bombyx mori]
          Length = 284

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 6/210 (2%)

Query: 3   ELSVRNLDG---EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           E+ + NLD    +  G+I +   ++A  P   ++   + WQS    +  + +K  +EV  
Sbjct: 55  EVWIENLDSVEEKKLGLIELHPMVYAAPPSIDMIHSNVMWQSKYSWVSWAHTKTSAEVRG 114

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKF 118
            G K + QKG GRA H S S   FRGGG A GP         LP  +    L   LS K 
Sbjct: 115 GGKKPWPQKGLGRASHGSMSSPLFRGGGVAHGPRSGKSHFFMLPFHLSLHGLTTTLSAKL 174

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLL 176
             +D+ ++ +L     +++YLV      +   +++I         N   A  N+ ++N++
Sbjct: 175 AQDDLHIVKDLELPTDESQYLVDLIENSNWGPSVLIIDDTDYAPSNITAATDNLLHVNIM 234

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           PV G+NVY +L+   LVL+++A E +E++ 
Sbjct: 235 PVYGLNVYSMLKHDTLVLTQAAAEKIEEKL 264


>gi|255569265|ref|XP_002525600.1| 50S ribosomal protein L4, putative [Ricinus communis]
 gi|223535036|gb|EEF36718.1| 50S ribosomal protein L4, putative [Ricinus communis]
          Length = 283

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 4/207 (1%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            L + +  GE  G   +          + ++ R +      KR G + +  R+EV   G 
Sbjct: 53  TLPILSFTGEKIGETYLDLKTAPPDTARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGK 112

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QK TGRAR  S       GGG  FGP P      + KK + LA+          + 
Sbjct: 113 KPYQQKKTGRARRGSSRTPLRPGGGVIFGPKPRDWSIKINKKEKRLAI-STALCSATESM 171

Query: 123 IMVIDN-LVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPVQ 179
           + V +     ++ KTK  +   +   L     +    +D   +  L++RNI  + +L  +
Sbjct: 172 LCVEEFGDKFEKPKTKDFIEAMKRWGLDPKEKVMFLMMDVADSVGLSSRNIGTLRMLTPR 231

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N++DIL   KLVL+  A++ L  R+
Sbjct: 232 TLNLFDILNSDKLVLTPDAVDYLNGRY 258


>gi|62184738|ref|YP_219523.1| 50S ribosomal protein L4 [Chlamydophila abortus S26/3]
 gi|81313079|sp|Q5L719|RL4_CHLAB RecName: Full=50S ribosomal protein L4
 gi|62147805|emb|CAH63551.1| putative 50S ribosomal protein l4 [Chlamydophila abortus S26/3]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 12/214 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M+ LS  +  G   G + + +  FA +     ++   L      KR   + ++ RSEV++
Sbjct: 1   MVLLSKFDFFGNKAGEVELPDAFFAQEGSGLQLVKDYLVAIRANKRQWSACTRNRSEVSH 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118
           +  K + QKGTG AR    +  QFRGGG  FGP P    H  + KK +  A+R  LS K 
Sbjct: 61  STKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKEKRAAIRLLLSQKI 120

Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALI-----IDGCQLDRNFQLAARN 169
            +N ++V D+ V        KTK  +   ++ ++    +     ++  Q + + +L+ RN
Sbjct: 121 QTNHLIVADDSVFTNSLTSPKTKEALRFLKSCNVECRGVLFIDDLEHAQNNESLRLSLRN 180

Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEAL 202
           +P +        IN YD++    +V+S+ A+  L
Sbjct: 181 LPAVRGFTYGMNINGYDLVSARNIVISEKALNRL 214


>gi|15835428|ref|NP_297187.1| 50S ribosomal protein L4 [Chlamydia muridarum Nigg]
 gi|270285608|ref|ZP_06195002.1| 50S ribosomal protein L4 [Chlamydia muridarum Nigg]
 gi|270289618|ref|ZP_06195920.1| 50S ribosomal protein L4 [Chlamydia muridarum Weiss]
 gi|301337004|ref|ZP_07225206.1| 50S ribosomal protein L4 [Chlamydia muridarum MopnTet14]
 gi|13878710|sp|Q9PJL5|RL4_CHLMU RecName: Full=50S ribosomal protein L4
 gi|7190842|gb|AAF39616.1| ribosomal protein L4 [Chlamydia muridarum Nigg]
          Length = 222

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 12/217 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ LS  +  G++ G + + +  FA + ++  +   L      KR   + ++GRSEV+++
Sbjct: 1   MVLLSKFDFSGKESGKVELPDAFFA-EGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
             K + QKGTG AR    +  QFRGGG  FGP P    H  + KK R  A+R  L+ K  
Sbjct: 60  TRKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHVRINKKERRAAIRLLLAQKIQ 119

Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALIIDGCQLD-----RNFQLAARNI 170
           +  ++V DN V        KTK  +   +  ++    ++    LD      N +L+ RN+
Sbjct: 120 TGKLIVADNSVFISSLNAPKTKEALRFLKECNVECRGVLFVDGLDHVGSNENLRLSVRNL 179

Query: 171 PNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +      + IN YDI     +V+S+ A+E L +  
Sbjct: 180 AAVRGFTYGENINGYDIAAARNIVVSEKALELLVENL 216


>gi|149072010|ref|YP_001293581.1| 50S ribosomal protein L4 [Rhodomonas salina]
 gi|134302961|gb|ABO70765.1| 50S ribosomal protein L4 [Rhodomonas salina]
          Length = 216

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
            V  L GE     S++  +    P + +L R +  Q+   R G S  K RSEV   G K 
Sbjct: 10  KVHTLAGEATSETSITLSVQDTNP-KYLLHRAIVAQNNGLRQGTSSCKTRSEVRGGGKKP 68

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTG AR  S +   ++GGG AFGP P      +  K   LAL  AL  +F    ++
Sbjct: 69  WKQKGTGNARSGSSNSPLWKGGGVAFGPQPRSYAKKMNTKEWRLALNTALQSRFDKTVVV 128

Query: 125 VIDNLVSKECKTKYLVTRF----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
              +   K  KTK  V          D S+  +I    ++ N  L+ RN+ N+ LL    
Sbjct: 129 EDFSNSIKNPKTKNAVEVLSKITNIADNSSKTLIILSDVNDNVNLSLRNLSNVTLLRSNT 188

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N+ DIL  +K++++  A++ +++ +
Sbjct: 189 LNIRDILLANKIIITDKALQNIQEVY 214


>gi|24213440|ref|NP_710921.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45658702|ref|YP_002788.1| 50S ribosomal protein L4 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|7674299|sp|Q9XD35|RL4_LEPIN RecName: Full=50S ribosomal protein L4
 gi|73917532|sp|Q72NG2|RL4_LEPIC RecName: Full=50S ribosomal protein L4
 gi|5163205|gb|AAD40584.1|AF115283_3 ribosomal protein L4 [Leptospira interrogans]
 gi|24194210|gb|AAN47939.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Lai str.
           56601]
 gi|45601946|gb|AAS71425.1| 50S ribosomal protein L4 [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 211

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 2/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++    + +G+    I +   +F  K     +   ++ ++   R G   +K RS V+  G
Sbjct: 1   MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSMVSGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     + GGG   GP      + +  K++  A+   L  K  ++
Sbjct: 61  KKPWSQKGTGRARQGSTRAPHWVGGGTVHGPQKRDYSYKVSSKLKHRAVLSILGKKAQAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQ 179
            + V+++L  KE  TK   + F+ ++L N  +I       +   + + RNIP +  +  +
Sbjct: 121 AVKVVEDLDPKEYNTKAFDSIFKNMNLKNTGVIGLLVQGENDFLKKSVRNIPTVKYINSK 180

Query: 180 GINVYDILRCSKLVLSKSAIEA 201
            I+  DIL    LV++++A++ 
Sbjct: 181 RISCRDILYNRNLVITEAALKE 202


>gi|182412050|ref|YP_001817116.1| ribosomal protein L4/L1e [Opitutus terrae PB90-1]
 gi|177839264|gb|ACB73516.1| ribosomal protein L4/L1e [Opitutus terrae PB90-1]
          Length = 210

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 88/204 (43%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L+V + D         +   F        +  V+   +   R G   +K R EV   G
Sbjct: 1   MKLTVFSPDATKSTEQDFTLPTFEGDKGLQAVKEVIVAINANNRQGTHSTKTRGEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     + GGG  FGP P      +  KV+ LA   AL D+  + 
Sbjct: 61  KKPWRQKGTGRARAGSIRSPLWGGGGVVFGPKPRDYSKKINAKVKQLAFSRALFDRASAG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           +I VI+   SK  KTK        +     +++           A+RN+  + L     +
Sbjct: 121 EIAVIEAFDSKATKTKAFNQILGRIAPKGKVLLVDAPFAAEAARASRNLERVTLQEAAKL 180

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N  D+ +  K+++S  A+EA+  R
Sbjct: 181 NTLDLAQYQKIIVSSKALEAIIAR 204


>gi|203284389|ref|YP_002222129.1| 50S ribosomal protein L4 [Borrelia duttonii Ly]
 gi|203287923|ref|YP_002222938.1| 50S ribosomal protein L4 [Borrelia recurrentis A1]
 gi|226730623|sp|B5RM37|RL4_BORDL RecName: Full=50S ribosomal protein L4
 gi|226730625|sp|B5RPI3|RL4_BORRA RecName: Full=50S ribosomal protein L4
 gi|201083832|gb|ACH93423.1| 50S ribosomal protein L4 [Borrelia duttonii Ly]
 gi|201085143|gb|ACH94717.1| 50S ribosomal protein L4 [Borrelia recurrentis A1]
          Length = 209

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++   I + + +F +    G +   +  +    R+G + +K R+EV  + 
Sbjct: 1   MERKVFSKDGQELRTIDLDDGVFNIDVSYGSIYNAINNELANLRVGTASTKTRAEVRGSS 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120
            K + QKGTGRAR  ++    + GGG A GP P    + LPKKV+ LA +  LS      
Sbjct: 61  KKPWKQKGTGRARVGTRRNPVWVGGGIALGPKPRDYSYKLPKKVKRLAFKSVLSLCASVD 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + + V++N      KTK L    +     +   +I     D+  + A +NI ++ +L   
Sbjct: 121 DRLKVVENFTIDSGKTKELALIIKNFIKHNGRTVILLGNDDQMIKRAGKNIRDLKILSFN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SAI  L + +
Sbjct: 181 RLRVVDLFYTKNLIALESAINGLNELY 207


>gi|321468499|gb|EFX79483.1| hypothetical protein DAPPUDRAFT_52198 [Daphnia pulex]
          Length = 258

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 3/201 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            ++ E  G+I +  ++FA +P+  I+   +RWQ   + +  + +K   EV   G K   Q
Sbjct: 36  TVEEEKLGLIDLHPEVFAERPRLDIIHENVRWQQLYRHVSYAHTKMSYEVRGGGRKPRPQ 95

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KG+GR+RH S     + GGG   GP  P    + L    R   LR  LS K   +D+ ++
Sbjct: 96  KGSGRSRHGSIRSPIWVGGGVVHGPRSPKPYFYMLGFNARLNGLRSTLSAKLAQDDLHIV 155

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVY 184
           ++L       KYL           +++       +  N   A+    + NL+PV G+NV+
Sbjct: 156 ESLDIPTDDPKYLEALVEERGWGPSVLFVDDHDIMPLNITAASDAYGHYNLMPVYGLNVF 215

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            +L+ + LV++ SA+E LE+R
Sbjct: 216 SMLKHTTLVMTLSAVERLEER 236


>gi|116327225|ref|YP_796945.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116327265|ref|YP_796985.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116332121|ref|YP_801839.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280149|sp|Q04PT9|RL4_LEPBJ RecName: Full=50S ribosomal protein L4
 gi|116119969|gb|ABJ78012.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120009|gb|ABJ78052.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125810|gb|ABJ77081.1| 50S Ribosomal protein L4 [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 211

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 2/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++    + +G+    I +   +F  K     +   ++ ++   R G   +K RSEV   G
Sbjct: 1   MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSEVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTG AR  S     + GGG   GP      + +  K++  A+   L+ K  ++
Sbjct: 61  KKPWSQKGTGHARQGSTRAPHWVGGGTVHGPQKRDYSYKVSSKLKHKAVLSILNKKAQAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQ 179
            + VI++L  KE  TK   + F+ ++L N  +I           + + RNIP +  +  +
Sbjct: 121 AVKVIEDLDPKEYSTKSFDSIFKNMNLRNTGVIGFLVQGESDFVKKSVRNIPTVKYINSK 180

Query: 180 GINVYDILRCSKLVLSKSAIEA 201
            I+  DIL    LV++++A+  
Sbjct: 181 RISCRDILYNRNLVITEAALNE 202


>gi|171913925|ref|ZP_02929395.1| 50S ribosomal protein L4 [Verrucomicrobium spinosum DSM 4136]
          Length = 202

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 8/206 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQ--GILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           +  +V  +D   +  + V      ++ ++    L   +      +R G + +K R+EVA 
Sbjct: 1   MASNVLTIDAAKQANVQV------VEGRKGAHALHDTIIAYRANRRQGNASTKSRNEVAG 54

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           +G K++ QKGTGRAR  S     + GGG  +GP P      +P++V++LA R AL+ +  
Sbjct: 55  SGKKLWKQKGTGRARMGSARSPIWSGGGVVWGPKPRDYSKKIPRQVKTLAFRTALTSRIN 114

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             D++V  +    + KTK  V     L  +  +++     D     + RN+ N+ L+   
Sbjct: 115 DGDVLVTADFQVSDGKTKSFVAAIAGLTDARKVLVLADSFDELTFRSGRNVQNVQLMAAT 174

Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205
            +N   +L   K+++S +A+E +  R
Sbjct: 175 DVNAEHLLAYDKIIISGAALETIARR 200


>gi|116515258|ref|YP_802887.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285346|sp|Q057A5|RL4_BUCCC RecName: Full=50S ribosomal protein L4
 gi|58384691|gb|AAW72706.1| 50S ribosomal protein L4 [Buchnera aphidicola (Cinara cedri)]
 gi|116257112|gb|ABJ90794.1| 50S ribosomal protein L4 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 201

 Score =  144 bits (363), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 1/189 (0%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +SE IF     + ++ +++     R+R G    K RSEV+ +G K + QKGTGRAR  S 
Sbjct: 14  ISESIFNKVFNEPLVHQIIVCYLARRRQGSKAQKSRSEVSGSGKKPWRQKGTGRARSGSL 73

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138
               +R GG  F   P      + KK+   A++  LS+    N   +    + +  KTK 
Sbjct: 74  RSPIWRSGGVTFAAKPKKYKLKMNKKMYRYAIKSILSELIRQNRFFLFKEFIIEFPKTKI 133

Query: 139 LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSA 198
           L+ +   ++   +++I     + +   A+RN+ ++ ++ V+ IN   ++   K++++ SA
Sbjct: 134 LLKKLELIN-LKSVLIITAHKNTSLLYASRNLYHVCVINVKSINPVILISYEKVLITLSA 192

Query: 199 IEALEDRFK 207
           I+ +E  FK
Sbjct: 193 IKKIEVMFK 201


>gi|149020530|gb|EDL78335.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 302

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 69/210 (32%), Positives = 111/210 (52%), Gaps = 12/210 (5%)

Query: 9   LDGEDKGVISVSEDIFALKPQ--------QGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
            + E  G+  +  D+FA  P+          IL +V  WQ   KRI  +K+K R+EV+  
Sbjct: 72  FEQERIGLAELHPDVFATTPRWSLTMKYKLDILHQVAVWQRNFKRISYAKTKTRAEVSGG 131

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG+GRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K  
Sbjct: 132 GRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLM 191

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLL 176
            +D+ ++D+L       +YL    +     +++++      ++ +N   A   + + NL+
Sbjct: 192 QDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVMAATSRLNSFNLI 251

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           P  G+NVY +L+   LVL+  ++  LED+ 
Sbjct: 252 PAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 281


>gi|124514442|gb|EAY55955.1| ribosomal protein L4 [Leptospirillum rubarum]
          Length = 218

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++ +  L  +    + ++      +     +L  +++ Q    R G + +K R EV+  
Sbjct: 1   MDIQMVALKDDSLKSLEINVSAEEAELINIPLLHEIIKMQRAGIRSGTASTKTRGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QKGTGRAR  S    Q+RGG   FGP P    +  P K   LA+++A+     +
Sbjct: 61  GKKPYRQKGTGRARQGSTRAPQWRGGAIIFGPRPRDYFYRQPAKKVVLAVKNAIFSHLEN 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSN---ALIIDGCQLDRNFQLAARNIPNINLLP 177
             + V+D+L     KTK L+  F    L      ++I    L  N   + RNIP + +L 
Sbjct: 121 KSLYVVDSLDVPSRKTKDLIALFNKWSLFPGEERILIIDNGLSENIYYSCRNIPGLEILL 180

Query: 178 VQGINVYDILRCSKLVLSKSAIE 200
              +N YD+L   K+++SK A E
Sbjct: 181 PHQVNPYDLLIADKVLVSKEAFE 203


>gi|148693203|gb|EDL25150.1| mitochondrial ribosomal protein L4, isoform CRA_d [Mus musculus]
          Length = 302

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 12/210 (5%)

Query: 9   LDGEDKGVISVSEDIFALKPQ--------QGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
            + E  G+  +  D+FA  P+          I+ +V  WQ   +RI  + +K R+EV+  
Sbjct: 72  FEQERIGLAELHPDVFATAPRWSLTMKYRLDIVHQVAIWQRNFRRISYANTKTRAEVSGG 131

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG+GRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K  
Sbjct: 132 GRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLM 191

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLL 176
            +D+ ++D+L       +YL    +     +++++      ++ +N   A   + + NL+
Sbjct: 192 QDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLI 251

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           P  G+NVY +L+   LVL+  ++  LED+ 
Sbjct: 252 PAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 281


>gi|328720672|ref|XP_001945994.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
           [Acyrthosiphon pisum]
          Length = 282

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 3/202 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            +      +I +   +F  +P+  I+   + WQ   K +  + +K  +EV  +  K + Q
Sbjct: 59  TIKENPSTIIDLHPQVFGSRPRIDIIHENVVWQKKYKYVSYANTKVTAEVNMSSKKPWPQ 118

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KG GRARH ++    FRGG    GP       + LP   R   L   LS K   +D+ V+
Sbjct: 119 KGQGRARHGTRRSPLFRGGSVIHGPRSHTTHFYMLPFYKRVYGLTSTLSVKLIQDDLHVV 178

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALII--DGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           +NL        Y+     +     +++   D   + +N  LA   I ++NL+PV G+NVY
Sbjct: 179 NNLDIPTDDPGYINDLVDSRLWGPSVLFIDDTDTMPKNISLALNQIKHMNLMPVYGLNVY 238

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+ +A++ +++R 
Sbjct: 239 SMLKYETLVLTVAAVKKIQERL 260


>gi|108804973|ref|YP_644910.1| 50S ribosomal protein L4P [Rubrobacter xylanophilus DSM 9941]
 gi|122381570|sp|Q1AU30|RL4_RUBXD RecName: Full=50S ribosomal protein L4
 gi|108766216|gb|ABG05098.1| LSU ribosomal protein L4P [Rubrobacter xylanophilus DSM 9941]
          Length = 211

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 2/200 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +     +  + +    F  +P+Q ++ R +  +   +R   + ++ RSEVA +
Sbjct: 1   MAQAQVFDARTGRRSEMELKGPRFETEPKQHVIHRAVVAELEARRRWTASTRERSEVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH--ALPKKVRSLALRHALSDKF 118
           G+K+Y QKGTGRAR          GGG   GP P    +   + +K    A   ALS K 
Sbjct: 61  GAKLYRQKGTGRARAGDIKSPLRHGGGTWGGPKPKGPRYGKKINRKEARAAFDGALSAKA 120

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
               + V+D L  +   TK        + +   +++     +R   L+ RN+P + ++  
Sbjct: 121 AEGRLYVLDALDFERPSTKRAKELLGQMGVEGPVLLVLDGEEREAALSFRNLPEVTVVGP 180

Query: 179 QGINVYDILRCSKLVLSKSA 198
           +G  VY++LR  ++V S++A
Sbjct: 181 RGYGVYELLRAREVVFSRAA 200


>gi|297623275|ref|YP_003704709.1| 50S ribosomal protein L4/L1e [Truepera radiovictrix DSM 17093]
 gi|297164455|gb|ADI14166.1| ribosomal protein L4/L1e [Truepera radiovictrix DSM 17093]
          Length = 216

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 7/203 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++++  +  E K  +++       +P+  +L  V+ WQ  ++R G + +K R  V+ T 
Sbjct: 1   MDVTLDVIGSERKVTLALP------EPKVSVLHEVVSWQLSKRRRGTAATKTRGTVSGTT 54

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +KMY QKGTGRARH S     F GGG AFGP P    + LPK+VR L L+ AL+ +   N
Sbjct: 55  AKMYPQKGTGRARHGSYKAPIFVGGGIAFGPQPRSYEYTLPKRVRRLGLKMALAARAQDN 114

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + +++       +TK  V   +      +  +     D   + AARN+P +++LP +G+
Sbjct: 115 KLTLVEAFGIG-GRTKEFVAWAKDHGFDGSERVLLVTDDELARRAARNLPWVSVLPSRGL 173

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           NVYDILR   +V   +     E+
Sbjct: 174 NVYDILRHDHVVADAALFAEPEE 196


>gi|319760330|ref|YP_004124268.1| 50S ribosomal protein L4 [Candidatus Blochmannia vafer str. BVAF]
 gi|318039044|gb|ADV33594.1| 50S ribosomal protein L4 [Candidatus Blochmannia vafer str. BVAF]
          Length = 213

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 1/186 (0%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           VSE IF       ++ +V+       R G    K R+EV+ +  K + QKGTGRAR  S 
Sbjct: 24  VSEKIFKYPFNMSLIHQVVSSYLINSRQGSRSQKSRAEVSGSNKKPWRQKGTGRARSGSL 83

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138
               +R GG  F   P      + KK+   A++  LS     N +++I+NL  ++ KTK 
Sbjct: 84  KSPIWRSGGVTFAAKPKKYNQKINKKMYKGAIKSILSKLVSENRLLLIENLFLEKPKTKL 143

Query: 139 LVTRFR-ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197
            + +    + L+ +++     ++ N  LA RN+  + +  +  ++   +++   ++ +K 
Sbjct: 144 FLEKLNCLIALNKSMLFITDMIESNVLLATRNLYKVEVRDLYHMDPVSLVKFDIVIFTKK 203

Query: 198 AIEALE 203
            +  +E
Sbjct: 204 VLNKIE 209


>gi|224092093|ref|XP_002309469.1| predicted protein [Populus trichocarpa]
 gi|222855445|gb|EEE92992.1| predicted protein [Populus trichocarpa]
          Length = 279

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 5/210 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             L + +  GE  G   +       +  + ++ R +      KR G + +  R EV   G
Sbjct: 48  ATLPILSFTGEKIGETYLDLKSAPPETARAVVHRGIITDQQNKRRGTASTLTRGEVRGGG 107

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QK TGRAR  S       GGG  FGP P      + +K + LA+  ALS     +
Sbjct: 108 RKPYPQKKTGRARRGSMRSPLRPGGGVIFGPKPRDWSIKINRKEKRLAMSTALSSAASES 167

Query: 122 DIMVI---DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLL 176
           + ++         ++ KTK  +       L     +    +D   N  L++RNI  + +L
Sbjct: 168 ESVICVEEFGDKFEKPKTKEFIEAMNRWGLDPKEKVMFLMMDVSDNVGLSSRNIGTLRML 227

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             + +N++DIL   KLVL+   ++ L  R+
Sbjct: 228 TPRTLNLFDILNSDKLVLTPDTVDYLNGRY 257


>gi|169843886|ref|XP_001828667.1| 50S ribosomal protein L4 [Coprinopsis cinerea okayama7#130]
 gi|116510276|gb|EAU93171.1| 50S ribosomal protein L4 [Coprinopsis cinerea okayama7#130]
          Length = 297

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 1/192 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +   +F    ++ IL   +       R G + +K RSEV  +G K+  QKGTGRAR  
Sbjct: 74  VVLDPTVFDHPIRRDILHLCVTHHLDSLRQGSANTKTRSEVRGSGRKIRPQKGTGRARLG 133

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
                   GGG AFGP P      LP+KV  + +R ALS K     + V+  L     KT
Sbjct: 134 DGQSPMLVGGGIAFGPKPRDFSTKLPRKVIQMGMRVALSAKVKERHLGVMSRLDWPNGKT 193

Query: 137 KYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           K+L  +   L L   L I G  ++    + A   +     + V  +NVY++L+  +++L 
Sbjct: 194 KHLQQKIDLLGLRKTLFITGENEVTTGLKRAINMLKYAAAVTVAEVNVYELLKWERVILD 253

Query: 196 KSAIEALEDRFK 207
             A+E  E   K
Sbjct: 254 LKAVEYFETTLK 265


>gi|256762004|ref|ZP_05502584.1| predicted protein [Enterococcus faecalis T3]
 gi|256683255|gb|EEU22950.1| predicted protein [Enterococcus faecalis T3]
          Length = 140

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/139 (38%), Positives = 76/139 (54%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  +++   DG   G I+++E+IF ++P + ++   +  Q    R G    K RS V   
Sbjct: 1   MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LSDK   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120

Query: 121 NDIMVIDNLVSKECKTKYL 139
           N+++ ++ L     KTK  
Sbjct: 121 NNLVAVEGLSFDAPKTKEF 139


>gi|330444114|ref|YP_004377100.1| 50S ribosomal protein L4/L1 family [Chlamydophila pecorum E58]
 gi|328807224|gb|AEB41397.1| ribosomal protein L4/L1 family [Chlamydophila pecorum E58]
          Length = 224

 Score =  142 bits (359), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 12/218 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIF-ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M+ LS  +  GE  G + VS+  F   +    ++   L      KR   + +K RSEV++
Sbjct: 1   MVLLSKFDFSGEKTGEVEVSDSFFVQEEGGLQLVKDYLTAIRANKRQWSANTKNRSEVSH 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPII-GVHALPKKVRSLALRHALSDKF 118
           +  K + QKGTG AR    +  QFRGGG  FGP P       + +K R  A+R  LS K 
Sbjct: 61  STKKPFKQKGTGNARQGCLAAPQFRGGGIVFGPRPKFDQHTRINRKERRAAIRLLLSQKI 120

Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALIIDGC-----QLDRNFQLAARN 169
               ++V ++ V     +  KT+  +   +   +    ++        +L++N +L+ RN
Sbjct: 121 QFEKLIVAEDSVFISSLQAPKTREALQFLKRCGVECRGVLFIDHLAHVELNQNLRLSLRN 180

Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +  +   +    +N YD+     +V+S+ A++ L  R 
Sbjct: 181 LSALRGFVYGINLNGYDLAAAHNVVISEKALQDLSKRL 218


>gi|223997036|ref|XP_002288191.1| RM4, ribosomal protein 4 [Thalassiosira pseudonana CCMP1335]
 gi|220975299|gb|EED93627.1| RM4, ribosomal protein 4 [Thalassiosira pseudonana CCMP1335]
          Length = 199

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 6/198 (3%)

Query: 15  GVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGC---SKSKGRSEVAYTGSKMYVQKGT 70
           G I +S   F     +  IL R + +Q  ++R      +++K   EV+ +G K+  QKG 
Sbjct: 2   GSIHLSAHTFGCDPIRVDILHRCVVYQRNKRRGKRNAGARTKTIHEVSGSGRKVRNQKGG 61

Query: 71  GRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
           G AR      + +RGG KA GP          L KKVR + +RHALS K    +++V+ +
Sbjct: 62  GVARAGHSRPAHWRGGAKAHGPKGSVQDYTTKLNKKVRKMGVRHALSQKLLEGNLIVMGD 121

Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
           L +K  KTK L        ++         L+ N ++A+ N+  + ++   G NVYD+L+
Sbjct: 122 LNAKSHKTKELEEALGRFGIAGKKGTVYGGLNVNLKVASGNLFKVKVMNQLGTNVYDLLK 181

Query: 189 CSKLVLSKSAIEALEDRF 206
             KLVLS SA++ALE+R 
Sbjct: 182 HEKLVLSLSAVKALEERL 199


>gi|166154742|ref|YP_001654860.1| 50S ribosomal protein L4 [Chlamydia trachomatis 434/Bu]
 gi|166155617|ref|YP_001653872.1| 50S ribosomal protein L4 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336016|ref|ZP_07224260.1| 50S ribosomal protein L4 [Chlamydia trachomatis L2tet1]
 gi|226730639|sp|B0B8A1|RL4_CHLT2 RecName: Full=50S ribosomal protein L4
 gi|226730641|sp|B0BCG6|RL4_CHLTB RecName: Full=50S ribosomal protein L4
 gi|165930730|emb|CAP04227.1| LSU ribosomal protein L1E [Chlamydia trachomatis 434/Bu]
 gi|165931605|emb|CAP07181.1| LSU ribosomal protein L1E [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 222

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ LS  +  G++ G   + +  F  + ++  +   L      KR   + ++GRSEV+++
Sbjct: 1   MVLLSKFDFSGKELGKFELPDAFF-TEGREQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
             K + QKGTG AR    +  QFRGGG  FGP P    H  + KK R  A+R  L+ K  
Sbjct: 60  TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119

Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALIIDGCQ-----LDRNFQLAARNI 170
           +  ++V +N V        KTK  +   +  ++    ++          + N +L+ RN+
Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDSLAHVGSNENLRLSVRNL 179

Query: 171 PNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +      + I+ YDI     +V+S+ A+E L +  
Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 216


>gi|323454046|gb|EGB09917.1| hypothetical protein AURANDRAFT_14958 [Aureococcus anophagefferens]
          Length = 178

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 2/177 (1%)

Query: 22  DIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVS 81
           D+FA   +  +L   +RWQ  ++R     SK R EV+ +  K+Y QKGTG AR  S    
Sbjct: 1   DVFAAPLRVDVLHDCVRWQRNKRRQVHRASKRRGEVSGSTRKLYRQKGTGNARAGSLRSP 60

Query: 82  QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT 141
             +GG KA GP        L KK R LALR ALS K     + V  +L +   KT+ +  
Sbjct: 61  LRKGGAKAHGPAARDFKTELNKKQRRLALRVALSAKLREGRLTVAASLDTP-PKTRVVAD 119

Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSA 198
             R   + +AL +D   L  +F+ A RN+P +++LP  G NVY IL+   LVLS+SA
Sbjct: 120 ALRGRGIRSALFVD-DDLAEDFKTACRNVPLVDVLPQVGANVYSILQRDHLVLSESA 175


>gi|255086631|ref|XP_002509282.1| predicted protein [Micromonas sp. RCC299]
 gi|226524560|gb|ACO70540.1| predicted protein [Micromonas sp. RCC299]
          Length = 190

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 6/194 (3%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
             +++    F +  +  I  RV+ WQ  ++R   +K+  RSEV+ T  K   QKG GRAR
Sbjct: 1   ETVTLPGRHFDVPLRVDIAHRVVVWQRSKRRGNYAKTLTRSEVSGTTRKARAQKGAGRAR 60

Query: 75  HSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSK 132
             +    Q RGGG A GP         L ++VR   L+ ALS K     I+V+D+     
Sbjct: 61  VGTLRAPQMRGGGVAHGPSGMRNWNTKLQRRVRRAGLQVALSAKAAEGRIVVLDSLHRGV 120

Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
           E KT++L      L  +  L         N + A+ N+P++ ++   G+NVYD+LR   L
Sbjct: 121 EPKTQWLDGALDTLLGAQKL----PTTHSNAKRASLNLPHVQVMDQFGLNVYDVLRHRSL 176

Query: 193 VLSKSAIEALEDRF 206
            +++ A++AL  R 
Sbjct: 177 AITRDALDALVARL 190


>gi|320103618|ref|YP_004179209.1| 50S ribosomal protein L4/L1e [Isosphaera pallida ATCC 43644]
 gi|319750900|gb|ADV62660.1| ribosomal protein L4/L1e [Isosphaera pallida ATCC 43644]
          Length = 256

 Score =  141 bits (356), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 27/234 (11%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ + V + +G   G  ++    F    ++ +L  V+      +R+G   ++GR++VA +
Sbjct: 1   MVTVPVYDREGRKVGEETIDPADFGGVVKKQLLHDVVLMHLAARRVGTVNTRGRADVAGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL-SDKFC 119
           G K++ QKGTG AR  SK  ++ +GGG AF        + LPK+    A+R A+ S    
Sbjct: 61  GKKLFRQKGTGNARVGSKRTNKRKGGGVAFARRNRNYRYTLPKRAVRAAIRMAVLSKFLD 120

Query: 120 SNDIMVID-NLVSKECKTKYLVTR-------------------------FRALDLSNALI 153
              ++V D  +     KT+ +                             +      +++
Sbjct: 121 HQALIVEDLPINRDAPKTRDVAALLRALPRPDLNGEAVQPTEGEPKSHALKRTLDHRSVL 180

Query: 154 IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           I     D     AARN+  + + PV   N YDIL+   L+L++ A+EAL+ R K
Sbjct: 181 IGLPAHDPIAWRAARNVEGVMVAPVAEFNTYDILKQRYLLLTRPALEALKQRAK 234


>gi|326499386|dbj|BAJ86004.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 315

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 9/211 (4%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQ--QGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
            L V N  GE  G +++   I A  P   + ++ R L       R G + +  R EV   
Sbjct: 63  TLPVINFTGEKVGEVALD--IKAAPPSTARAVVHRALITDRQNARRGTASTLTRGEVRGG 120

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K Y QK TG+AR  S       GGG  FGP P      + +K + LA+  AL+    +
Sbjct: 121 GRKPYGQKKTGKARRGSVRTPLRPGGGVIFGPKPRDWTIKINRKEKRLAISTALASAAVA 180

Query: 121 NDIMVIDNLVSKE---CKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINL 175
           ND  V+     +     +T+  V   +    D     +    +LD N + + RNI  + +
Sbjct: 181 NDSFVVQEFDEEFATGPRTRDFVAALQRWGLDPREKAMFFSTELDDNVRPSGRNIGTLKM 240

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           L  + +N+YDIL   K   + +AIE L  R+
Sbjct: 241 LTPRTLNLYDILDARKHFFTPAAIEYLNSRY 271


>gi|295698648|ref|YP_003603303.1| ribosomal protein L4/L1 family [Candidatus Riesia pediculicola
           USDA]
 gi|291157110|gb|ADD79555.1| ribosomal protein L4/L1 family [Candidatus Riesia pediculicola
           USDA]
          Length = 202

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL++ +   +    I +S+ IF ++    ++ +V++      R G    K RS+V+ + 
Sbjct: 1   MELTILDTHKK----IQISDRIFNVRLNHSLVHQVIKSFLSNLRTGTKSQKNRSQVSGSN 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTG AR  S     +R GG AF          + KK+   A+R   S+    N
Sbjct: 57  KKPWKQKGTGHARAGSVKSPIWRSGGMAFATNFRSYKKKINKKMYKKAMRCIFSELIREN 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            +++++NL     KTK             + ++I   ++++   L++RN+  IN+  V  
Sbjct: 117 RLVIVENLFLDRIKTKLFKKMIDDICRNRDKILIITKKINQFLILSSRNLHKINICEVSE 176

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN  ++++   ++ +  AI+ +E+  
Sbjct: 177 INPVNLIKNRTIISTVEAIKKVEESL 202


>gi|161611307|ref|YP_007412.2| 50S ribosomal protein L4 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 227

 Score =  141 bits (355), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 20/226 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L   NL G++ G +++ +    ++    ++   +       R   + +K R+EV +T
Sbjct: 1   MATLKKYNLAGKEIGQVNIDDTWLNVEANGQMIKDYIVALRANARQWSASTKTRAEVKHT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
             K + QKG GRARH S    Q+RGGG+AFGP P    H  + KK R  A+R  LS+K  
Sbjct: 61  TKKAHPQKGQGRARHGSTVAPQYRGGGRAFGPRPKFDQHVRINKKERKAAIRFLLSEKLK 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-------------------QLD 160
            N + +I++      KTK L    R  DL   ++  G                       
Sbjct: 121 ENKVWLIEDTAMDAPKTKTLAQFLRGFDLRGRVLFLGETTFTDVETEGKVQRVSISTDKH 180

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            +F  + RN+P  N +    IN YD++   ++VL++SA+  L    
Sbjct: 181 NHFVKSMRNLPRANFMLASNINGYDVMIAREIVLTESALNELNQWL 226


>gi|255020766|ref|ZP_05292824.1| LSU ribosomal protein L4p (L1e) [Acidithiobacillus caldus ATCC
           51756]
 gi|254969762|gb|EET27266.1| LSU ribosomal protein L4p (L1e) [Acidithiobacillus caldus ATCC
           51756]
          Length = 205

 Score =  140 bits (354), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 1/190 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +++ +FA+   + +L +V+  Q    R G +  K RS V   G K + QKG+GRAR  
Sbjct: 16  VELADAVFAVPYNEALLHQVVVAQLAGLRSGTAAQKNRSAVRGGGRKPWKQKGSGRARAG 75

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
           S     +RGGG+AF  V       + KK+ + A+R AL++      + ++      E + 
Sbjct: 76  SIRSPLWRGGGRAFPGVTQNYAQKVNKKMWAGAMRTALAELLRQGRLQIVVVEDFAEPRA 135

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           +      + +  S+ L++   ++  N  LA RN P + +   Q I   D+LR  ++++  
Sbjct: 136 RLARDWLQKVGGSDLLLVM-DEVPENLFLALRNFPQVGIAGWQDIGPADLLRYGRVLMDA 194

Query: 197 SAIEALEDRF 206
            A     + +
Sbjct: 195 QAAAKFGEVY 204


>gi|94676724|ref|YP_588777.1| ribosomal protein L4 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|166234636|sp|Q1LTD7|RL4_BAUCH RecName: Full=50S ribosomal protein L4
 gi|94219874|gb|ABF14033.1| ribosomal protein L4 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 201

 Score =  140 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 5/205 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VS +IF  +  + ++ +V+   +   R G    K R+EV  + 
Sbjct: 1   MELVLQDTQ----KSLTVSNNIFGYRFNEALIHQVIVAYAAHTRSGNHAQKSRAEVVGSN 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  +     +R GG  F   P      + KK+   AL+   S+     
Sbjct: 57  KKPWRQKGTGRARAGTVKSPLWRSGGVTFAAKPRDYSQKINKKMYRGALKSIFSELIRQK 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++    +  KTK LV + + + L   LII           A   +  + +  +  I
Sbjct: 117 RLIVVEQFCIQAPKTKLLVDKLKKITLKKVLIITHLLELNLLLAARN-LYTVEICDIANI 175

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N+  ++   +++++ ++I+ +E+R 
Sbjct: 176 NLISLVTFDQVIITANSIKQIEERL 200


>gi|17987041|ref|NP_539675.1| 50S ribosomal protein L4 [Brucella melitensis bv. 1 str. 16M]
 gi|17982697|gb|AAL51939.1| lsu ribosomal protein l1e (= l4p) [Brucella melitensis bv. 1 str.
           16M]
          Length = 201

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/166 (53%), Positives = 120/166 (72%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++  L+G+D G + ++E+IF L P+  IL RV+RWQ  R++ G  K++GR +V+ TG
Sbjct: 1   MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           SKMY QKGTGRARH S    QFRGGG+A GPV     H LPKKVR+L LRHALS K  ++
Sbjct: 61  SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167
           D+++ID+L S + KTK LV++F  L L NAL+I G ++D NFQ AA
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKLGLENALLIGGAEIDANFQRAA 166


>gi|15605256|ref|NP_220042.1| 50S ribosomal protein L4 [Chlamydia trachomatis D/UW-3/CX]
 gi|76789264|ref|YP_328350.1| 50S ribosomal protein L4 [Chlamydia trachomatis A/HAR-13]
 gi|237802956|ref|YP_002888150.1| 50S ribosomal protein L4 [Chlamydia trachomatis B/Jali20/OT]
 gi|237804878|ref|YP_002889032.1| 50S ribosomal protein L4 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|7674296|sp|O84532|RL4_CHLTR RecName: Full=50S ribosomal protein L4
 gi|109893586|sp|Q3KLH0|RL4_CHLTA RecName: Full=50S ribosomal protein L4
 gi|3328964|gb|AAC68128.1| L4 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|76167794|gb|AAX50802.1| LSU ribosomal protein L1E [Chlamydia trachomatis A/HAR-13]
 gi|231273178|emb|CAX10091.1| LSU ribosomal protein L1E [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274190|emb|CAX10984.1| LSU ribosomal protein L1E [Chlamydia trachomatis B/Jali20/OT]
 gi|296436060|gb|ADH18234.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/9768]
 gi|296436988|gb|ADH19158.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/11222]
 gi|296437921|gb|ADH20082.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/11074]
 gi|297140421|gb|ADH97179.1| 50S ribosomal protein L4 [Chlamydia trachomatis G/9301]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ LS  +  G++ G   + +  F  + ++  +   L      KR   + ++GRSEV+++
Sbjct: 1   MVLLSKFDFSGKESGKFELPDAFF-TEGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
             K + QKGTG AR    +  QFRGGG  FGP P    H  + KK R  A+R  L+ K  
Sbjct: 60  TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119

Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALIIDGC-----QLDRNFQLAARNI 170
           +  ++V +N V        KTK  +   +  ++    ++          + N +L+ RN+
Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179

Query: 171 PNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +      + I+ YDI     +V+S+ A+E L +  
Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 216


>gi|297748657|gb|ADI51203.1| LSU ribosomal protein L1E ( L4P) [Chlamydia trachomatis D-EC]
 gi|297749537|gb|ADI52215.1| LSU ribosomal protein L1E (L4P) [Chlamydia trachomatis D-LC]
          Length = 231

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 12/217 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ LS  +  G++ G   + +  F  + ++  +   L      KR   + ++GRSEV+++
Sbjct: 10  MVLLSKFDFSGKESGKFELPDAFF-TEGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 68

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPII-GVHALPKKVRSLALRHALSDKFC 119
             K + QKGTG AR    +  QFRGGG  FGP P       + KK R  A+R  L+ K  
Sbjct: 69  TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 128

Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALIIDGC-----QLDRNFQLAARNI 170
           +  ++V +N V        KTK  +   +  ++    ++          + N +L+ RN+
Sbjct: 129 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 188

Query: 171 PNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +      + I+ YDI     +V+S+ A+E L +  
Sbjct: 189 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 225


>gi|119953268|ref|YP_945477.1| 50S ribosomal protein L4 [Borrelia turicatae 91E135]
 gi|119862039|gb|AAX17807.1| LSU ribosomal protein L1E [Borrelia turicatae 91E135]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E  V + DG++   I++ E +F +    G +   +  +    R+G + +K RSEV  + 
Sbjct: 14  MERKVFSKDGQELRTINLEEGVFNIDISYGSIYNAINNELANLRVGTASTKTRSEVRGSS 73

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC-S 120
            K + QKGTGRAR  +K    + GGG A GP P    + LPKKV+ LA R  LS      
Sbjct: 74  KKPWKQKGTGRARVGTKRNPVWVGGGVALGPKPRDYSYKLPKKVKRLAFRSVLSLCVSVE 133

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRAL-DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           + + +++N   +  KTK L    +    ++   +I     D+  + A +NI ++ +L   
Sbjct: 134 DRLKIVENFTIESGKTKDLALIMKNFIKINGKTVILLGNDDQMVKRAGKNIRDLKILSFN 193

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            + V D+     L+  +SAI  L + +
Sbjct: 194 RLRVVDLFYAKNLIALESAINGLNELY 220


>gi|255311345|ref|ZP_05353915.1| 50S ribosomal protein L4 [Chlamydia trachomatis 6276]
 gi|255317646|ref|ZP_05358892.1| 50S ribosomal protein L4 [Chlamydia trachomatis 6276s]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ LS  +  G++ G   + +  F  + ++  +   L      KR   + ++GRSEV+++
Sbjct: 1   MVLLSKFDFSGKESGKFELPDTFF-TEGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
             K + QKGTG AR    +  QFRGGG  FGP P    H  + KK R  A+R  L+ K  
Sbjct: 60  TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIRLLLAQKIQ 119

Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALIIDGC-----QLDRNFQLAARNI 170
           +  ++V +N V        KTK  +   +  ++    ++          + N +L+ RN+
Sbjct: 120 TGKLIVAENSVFVSSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179

Query: 171 PNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +      + I+ YDI     +V+S+ A+E L +  
Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 216


>gi|145354841|ref|XP_001421683.1| Plastid ribosomal protein L4 large ribosomal subunit [Ostreococcus
           lucimarinus CCE9901]
 gi|144581921|gb|ABO99976.1| Plastid ribosomal protein L4 large ribosomal subunit [Ostreococcus
           lucimarinus CCE9901]
          Length = 251

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 4/202 (1%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           +     DG      ++       +  +G++ + +       R G + +  +SEV   G K
Sbjct: 39  IDAVTFDGAKSSAATLELKTARAEVARGLVHKYVVMVRQNARRGTASTLTKSEVRGGGRK 98

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTG AR  S       GGG +FGP P      + KK R LA+  AL     S  I
Sbjct: 99  PFKQKGTGNARAGSSRTPLKPGGGVSFGPKPRDWSIKMNKKERRLAMATALQS-AASAMI 157

Query: 124 MVID-NLVSKECKTKYLVTRFRALDL--SNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +V D +       T        A  +  S    +     + N   +ARNI  +    V  
Sbjct: 158 VVDDISGNISAPGTNAFNKSLMAWGVGASEKAYVITKDANENVAKSARNIERVVQTDVSH 217

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +NVYDIL   K+++  SA+  +
Sbjct: 218 LNVYDILNADKVIVEASALAHI 239


>gi|269302430|gb|ACZ32530.1| ribosomal protein L4 [Chlamydophila pneumoniae LPCoLN]
          Length = 224

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 12/218 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M+ LS  +  G   G + V++ +FA +     ++   +      KR   + ++ RSEV++
Sbjct: 1   MVLLSKFDFSGNKIGEVEVADSLFADEGDGLQLIKDYIVAIRANKRQWSACTRNRSEVSH 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118
           +  K + QKGTG AR    +  QFRGGG  FGP P    H  + +K R  A+R  L+ K 
Sbjct: 61  STKKPFKQKGTGNARQGCLASPQFRGGGIVFGPKPKFNQHVRINRKERKAAIRLLLAQKI 120

Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALI-----IDGCQLDRNFQLAARN 169
            +N + V+D+ V        KT+  +   +  ++    I     +D  + + N +L+ RN
Sbjct: 121 QTNKLTVVDDTVFVDALTAPKTQSALKFLKDCNVECRSILFIDHLDHVEKNENLRLSLRN 180

Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +  +   +    IN YD+     +V+SK A++ L +R 
Sbjct: 181 LTAVKGFVYGININGYDLASAHNIVISKKALQELVERL 218


>gi|15618556|ref|NP_224842.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae CWL029]
 gi|15836178|ref|NP_300702.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae J138]
 gi|16752394|ref|NP_444653.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae AR39]
 gi|33242003|ref|NP_876944.1| 50S ribosomal protein L4 [Chlamydophila pneumoniae TW-183]
 gi|7674302|sp|Q9Z7Q8|RL4_CHLPN RecName: Full=50S ribosomal protein L4
 gi|4376944|gb|AAD18785.1| L4 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
 gi|7189036|gb|AAF37985.1| ribosomal protein L4 [Chlamydophila pneumoniae AR39]
 gi|8979018|dbj|BAA98853.1| L4 ribosomal protein [Chlamydophila pneumoniae J138]
 gi|33236513|gb|AAP98601.1| ribosomal protein L4 [Chlamydophila pneumoniae TW-183]
          Length = 224

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 12/218 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQ-QGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M+ LS  +  G   G + V++ +FA +     ++   +      KR   + ++ RSEV++
Sbjct: 1   MVLLSKFDFSGNKIGEVEVADSLFADEGDGLQLIKDYIVAIRANKRQWSACTRNRSEVSH 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKF 118
           +  K + QKGTG AR    +  QFRGGG  FGP P    H  + +K R  A+R  L+ K 
Sbjct: 61  STKKPFKQKGTGNARQGCLASPQFRGGGIVFGPKPKFNQHVRINRKERKAAIRLLLAQKI 120

Query: 119 CSNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALI-----IDGCQLDRNFQLAARN 169
            +N + V+D+ V        KT+  +   +  ++    I     +D  + + N +L+ RN
Sbjct: 121 QTNKLTVVDDTVFVDALTAPKTQSALRFLKDCNVECRSILFIDHLDHVEKNENLRLSLRN 180

Query: 170 IPNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +  +   +    IN YD+     +V+SK A++ L +R 
Sbjct: 181 LTAVKGFVYGININGYDLASAHNIVISKKALQELVERL 218


>gi|261749469|ref|YP_003257155.1| 50S ribosomal subunit protein L4 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497562|gb|ACX84012.1| 50S ribosomal subunit protein L4 [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 210

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/207 (26%), Positives = 107/207 (51%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL + ++ G      +  +E  F+ K     +   ++     +R G  KSK R E++ +
Sbjct: 1   MELEILDIKGNSTNRKVLFNEKFFSKKSYDHPIYLEVKRYLSAQRQGTHKSKERGEISGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTG +R        FRGGG+ FGP P      + K  ++LA ++ +  K  +
Sbjct: 61  RRKLHRQKGTGGSRKGDIKNPLFRGGGRVFGPTPRRYFMKINKLTKNLAKKNIIEHKLKT 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
             + +I++   K+ KTK ++   ++   ++   ++   + DRN  L+ARN+ N  LL  +
Sbjct: 121 KKVKIIEDFQLKKPKTKLVLNILKSLQLMNEKSLMIVEKADRNLHLSARNLKNFQLLNAE 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N Y +L  S ++LS+++++ +E   
Sbjct: 181 ELNSYSLLNSSYVILSENSVKRIERIL 207


>gi|312376204|gb|EFR23370.1| hypothetical protein AND_13049 [Anopheles darlingi]
          Length = 490

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 3/197 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            +  +  G++S+   +F   P+  I+ + + WQ   + +  + SK R+EV   G K + Q
Sbjct: 45  TVQEQKLGILSLENAVFGASPRIDIVHQNIEWQRKYRFVSFAHSKTRNEVRGGGRKPWPQ 104

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KG GRARH S     +RGGG A GP  P    + LP   R L L   LS K   ND+ V+
Sbjct: 105 KGLGRARHGSIRSPLWRGGGIAHGPRSPTTHFYMLPFFNRVLGLVSTLSIKLAQNDLHVV 164

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVY 184
            +L       +YL           +++       L RN  + A +I +INL+PV G+NVY
Sbjct: 165 QDLEIPTEDPQYLRDLVSERLWGPSVLFVDSSDILPRNISIGADSINHINLMPVYGLNVY 224

Query: 185 DILRCSKLVLSKSAIEA 201
            +L+ + LVL++SA+  
Sbjct: 225 SMLKHNTLVLTESALAH 241


>gi|255348904|ref|ZP_05380911.1| 50S ribosomal protein L4 [Chlamydia trachomatis 70]
 gi|255503444|ref|ZP_05381834.1| 50S ribosomal protein L4 [Chlamydia trachomatis 70s]
 gi|255507123|ref|ZP_05382762.1| 50S ribosomal protein L4 [Chlamydia trachomatis D(s)2923]
 gi|289525572|emb|CBJ15050.1| LSU ribosomal protein L1E [Chlamydia trachomatis Sweden2]
 gi|296435132|gb|ADH17310.1| 50S ribosomal protein L4 [Chlamydia trachomatis E/150]
 gi|296438852|gb|ADH21005.1| 50S ribosomal protein L4 [Chlamydia trachomatis E/11023]
          Length = 222

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 12/217 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M+ LS  +  G++ G   + +  F  + ++  +   L      KR   + ++GRSEV+++
Sbjct: 1   MVLLSKFDFSGKESGKFELPDAFF-TEGKEQSVKDYLVAIQANKRQWSACTRGRSEVSHS 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
             K + QKGTG AR    +  QFRGGG  FGP P    H  + KK R  A++  L+ K  
Sbjct: 60  TKKPFRQKGTGNARQGCLAAPQFRGGGIVFGPKPKFDQHIRINKKERRAAIQLLLAQKIQ 119

Query: 120 SNDIMVIDNLVS----KECKTKYLVTRFRALDLSNALIIDGC-----QLDRNFQLAARNI 170
           +  ++V +N V        KTK  +   +  ++    ++          + N +L+ RN+
Sbjct: 120 TGKLIVAENSVFISSLDAPKTKEALRFLKECNVECRGVLFVDGLAHVGSNENLRLSVRNL 179

Query: 171 PNIN-LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +      + I+ YDI     +V+S+ A+E L +  
Sbjct: 180 SAVRGFTYGENISGYDIAAARNIVVSEKALELLVESL 216


>gi|257458707|ref|ZP_05623831.1| ribosomal protein, L4/L1 family [Campylobacter gracilis RM3268]
 gi|257443896|gb|EEV19015.1| ribosomal protein, L4/L1 family [Campylobacter gracilis RM3268]
          Length = 204

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++SV N   E    I +       +     L   ++      R   + +K R+EV+  
Sbjct: 1   MSKVSVLNEKLEKASEIEIPAKF--SEVNSHNLYLYVKSYLASLRANTANAKTRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  A+++K  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYEQKVNKKQKRLALEFAINEKAN 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              I + D+L  K  KTK      + L + +A +I   +LD    LA RN+ N  ++   
Sbjct: 119 EGKIFIFDDLELKSGKTKDAANFIKKLGVRDA-LIVKNELDAQTLLAYRNLKNCYVIDAS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y I     +V  K+A E++  
Sbjct: 178 EVNAYLIAVYGSVVFEKAAFESIVK 202


>gi|71902235|ref|ZP_00684242.1| Ribosomal protein L4/L1e [Xylella fastidiosa Ann-1]
 gi|71728009|gb|EAO30223.1| Ribosomal protein L4/L1e [Xylella fastidiosa Ann-1]
          Length = 202

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++   D      + VS+ +F  +  + ++ +V+       R G    K RS+V+   
Sbjct: 1   MDLTIVGSDN----TLPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVS-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG AF   P      + +K    A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVAFAAKPRSFSQKVNRKQYRSAICSIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + V+D    +  KTK    + ++L+ + ++L+I   ++     L++RN+P +++  VQ 
Sbjct: 116 RLKVVDAFDVEVSKTKAFAEKIKSLELVGSSLLIVSDEISECLSLSSRNLPCVDVRSVQA 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++   ++    +VL+  A++ +E+  
Sbjct: 176 LDPVALVGSDVVVLTVGAVKKIEEWL 201


>gi|262341014|ref|YP_003283869.1| 50S ribosomal protein L4 [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272351|gb|ACY40259.1| 50S ribosomal protein L4 [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 209

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 2   IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +EL + ++ G      +   E+IF  +     +   ++     +R G  KSK R E++ +
Sbjct: 1   MELRILDIKGNFTDKKVEFDENIFFKRSYDHSVYLEIKRFLSSQRQGTHKSKERGELSGS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K++ QKGTG +R        FRGGG+ FGP P   +  L K+ +S   +  +  K   
Sbjct: 61  TRKLHRQKGTGGSRKGDIKNPIFRGGGRVFGPRPRKYLTKLNKRTKSSVRKFIIEQKLIQ 120

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N I +I+++     KTK+ +    ++   +  L++   + ++N  L++RN+    LL V 
Sbjct: 121 NQIKIIEDIEFNIPKTKFFLGILNSIKLKNKKLLMVLGEENKNLYLSSRNLKCFKLLNVN 180

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ + +L    +V ++++I+ + +  
Sbjct: 181 ELDCFSLLNFPSIVFTENSIKKIHEFL 207


>gi|17564584|ref|NP_505181.1| hypothetical protein T23B12.2 [Caenorhabditis elegans]
 gi|2384911|gb|AAB69933.1| Hypothetical protein T23B12.2 [Caenorhabditis elegans]
          Length = 299

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 4/206 (1%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++  ++ E  G++ +  DIF   P+  IL R L WQS  + +  +K   ++E+   G K 
Sbjct: 55  NLDTIEDEKLGLVDLHPDIFRTSPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKP 114

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QK TGRA   S    QF  GG A G   P    + LP  VR   L  AL+ K   +D+
Sbjct: 115 WPQKKTGRAHVGSIRSPQFIRGGFANGVRGPRTWFYMLPDAVRIQGLCVALTLKHTQDDL 174

Query: 124 MVIDN-LVSKECKTKYLVTRFRALDLSNALIIDG--CQLDRNFQLAARNIPNINLLPVQG 180
            ++D     +    KY +    A +   +++      ++      A + +P +N++PV G
Sbjct: 175 HIVDKIQNLQNGDPKYWIDLCEARNYGYSVLFVDDCDEISGGLAEAQQALPWLNVMPVYG 234

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N + +++   +VLS+SA+E +E+R 
Sbjct: 235 LNCFSLMKYDTIVLSRSALERVEERL 260


>gi|268554728|ref|XP_002635351.1| Hypothetical protein CBG01522 [Caenorhabditis briggsae]
 gi|187038160|emb|CAP22734.1| hypothetical protein CBG_01522 [Caenorhabditis briggsae AF16]
          Length = 294

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            ++ E  G++ +  DIF   P+  IL R L WQS  + +  +K   ++E+   G K + Q
Sbjct: 53  TVEDEKLGLVDLHPDIFRTTPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKPWPQ 112

Query: 68  KGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           K TGRA   S    QF  GG A G   P    + LP  +R   L  AL+ K   +D+ ++
Sbjct: 113 KKTGRAHVGSIRAPQFIRGGFANGVRGPRTWFYMLPDAIRIQGLCVALTLKHAQDDLHIV 172

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN---FQLAARNIPNINLLPVQGINV 183
           DN+ + +                   ++     D        A + +P +N++PV G+N 
Sbjct: 173 DNIQNLQNGDPKFWIDLCEARNYGYSVLFIDDCDEVSGGLAEAQQALPWLNVMPVYGLNC 232

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
           + +++   +VLS++A++ +E+R 
Sbjct: 233 FSLIKYDTVVLSRNALDRIEERL 255


>gi|37912990|gb|AAR05319.1| ribosomal protein L4 [uncultured marine alpha proteobacterium
           HOT2C01]
          Length = 229

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 69/204 (33%), Positives = 119/204 (58%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++ +  +DG+  G +++ + +F  K    ++  ++RW    ++   +++K RSEV  T 
Sbjct: 24  MQIDMHKIDGKKSGSVNLKDQLFNSKSGLSVVGSLVRWSESNQKPLRARTKNRSEVKGTT 83

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+  QKG+G ARH SK  + FR GG A     +  +  +PK+ R  AL+H  +DK  +N
Sbjct: 84  QKLGRQKGSGGARHGSKKANIFRSGGMAHNLRGVRSLKKMPKRTRQEALKHIFADKLKNN 143

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++++++ L  +E KTK L      L+  +ALI++G + D NF LA+RN+ NI    +   
Sbjct: 144 NLIIVEELKIEEPKTKILAKSLSDLNAHSALILEGDKPDNNFVLASRNLKNIKYSSINNF 203

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N  D+L   KL++SK+A+E LE R
Sbjct: 204 NALDLLGFEKLIMSKNALEILESR 227


>gi|198282638|ref|YP_002218959.1| 50S ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666574|ref|YP_002424831.1| ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|226730604|sp|B7J468|RL4_ACIF2 RecName: Full=50S ribosomal protein L4
 gi|226730605|sp|B5ELY0|RL4_ACIF5 RecName: Full=50S ribosomal protein L4
 gi|198247159|gb|ACH82752.1| ribosomal protein L4/L1e [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518787|gb|ACK79373.1| ribosomal protein L4 [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 205

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 1/205 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++    +       I +++ +F +   + +L +V+  Q    R   +  K R+ V   G
Sbjct: 1   MQVQSLEVTTGKSSEIEIADGVFGVPYNEALLHQVVVAQMAGMRSANAVQKNRAAVRGGG 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +RGGG+AF          + KK+ + A+R  L++     
Sbjct: 61  RKPWKQKGTGRARAGSIRSPIWRGGGRAFPGGNENYTQKVNKKMWAGAMRTVLAELLRQG 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            + +I      E +++            N L++ G ++  N  L  RN P + +   Q +
Sbjct: 121 RLQIIQQEDFGEPRSRLGRDWLSRAGGDNVLLVMG-EVPLNLFLGLRNFPRVGIAGWQDV 179

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
              D+L+  +++L   A   L + +
Sbjct: 180 GPADLLQYGRVLLDVEAAARLGEVY 204


>gi|303283616|ref|XP_003061099.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457450|gb|EEH54749.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 254

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 4/206 (1%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           +   + DG  K    ++         +G++ + +       R G + +  +SEV   G K
Sbjct: 42  VEKVSFDGATKSTADLTLKTARADVAKGLVHKYVVMVRQNARRGTASTLTKSEVRGGGRK 101

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTG AR  S       GGG +FGP P      + KK R LA+  A+      + I
Sbjct: 102 PFNQKGTGNARAGSIRSPLKPGGGVSFGPKPKDWSIKMNKKERRLAMATAIQS-AAGSMI 160

Query: 124 MVID-NLVSKECKTKYLVTRFRAL--DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +V D        KTK +    +A   +      +         +L+ RN+  +    +  
Sbjct: 161 VVDDLGANVSVAKTKTMANALKAWGVEEGEKAYVITKDASDAVKLSTRNMAKVVQSDISH 220

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +NVYD+L   K+V+ +SA++ + D +
Sbjct: 221 LNVYDVLNADKVVVEESALKYINDFY 246


>gi|323454820|gb|EGB10689.1| hypothetical protein AURANDRAFT_59906 [Aureococcus anophagefferens]
          Length = 243

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 4/209 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
            E+ V++ DG D G  ++S      +    ++ R    +    R G + +K R+EV   G
Sbjct: 33  AEVPVKSFDGADAGTATLSLKTTKGEKDMYVVHRKYVNERRNARQGTASTKTRAEVRGGG 92

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCS 120
            K + QKGTGRAR  S       GGG  FGP P    +  + +K   LA+  A+ +K   
Sbjct: 93  RKPFKQKGTGRARQGSTRTPLKPGGGVVFGPKPKDWANKKINRKEAELAIGIAIQNKAAR 152

Query: 121 NDIMVIDNLVS-KECKTKYLVTRFR--ALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             ++           KTK + +      LD     ++     D   + +A N+PN  L  
Sbjct: 153 ATVVDSLAGKFVGAPKTKSVTSMLSGLGLDADEKTVLVYDTEDDVLEKSAANLPNCELRL 212

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
              I V D+L  ++++ +K A + + +R+
Sbjct: 213 QDEITVSDMLWANQVLFTKPAFDWVNERY 241


>gi|328787688|ref|XP_001120958.2| PREDICTED: 39S ribosomal protein L4, mitochondrial [Apis mellifera]
          Length = 280

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 3/201 (1%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            ++ +  G++ +  D++   P+  I+ + ++WQ   + +  + +K RSEV   G K + Q
Sbjct: 59  TIERKKLGLMFLHPDVYGTAPRIDIIHQNVQWQKMYRFVSYAHTKVRSEVRGGGKKPWRQ 118

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           KG GRARH S     +RGGG   GP  P    + LP   R   L   LS K   +D+ +I
Sbjct: 119 KGLGRARHGSIRSPLWRGGGVIHGPRSPTTHFYMLPFYNRVNGLTSTLSVKLAQDDLYII 178

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--LDRNFQLAARNIPNINLLPVQGINVY 184
            +L     ++ Y+           +++       +  N   A   I ++NL+PV G+NVY
Sbjct: 179 KDLEIPSNESSYIEKLIEERHWGPSVLFVDTDDIMPINITEATDTIKHVNLMPVYGLNVY 238

Query: 185 DILRCSKLVLSKSAIEALEDR 205
            +L+   LVL++ A   +ED+
Sbjct: 239 SMLKHDTLVLTERAARLIEDK 259


>gi|71276485|ref|ZP_00652760.1| Ribosomal protein L4/L1e [Xylella fastidiosa Dixon]
 gi|170729701|ref|YP_001775134.1| 50S ribosomal protein L4 [Xylella fastidiosa M12]
 gi|226731448|sp|B0U5A8|RL4_XYLFM RecName: Full=50S ribosomal protein L4
 gi|71162662|gb|EAO12389.1| Ribosomal protein L4/L1e [Xylella fastidiosa Dixon]
 gi|167964494|gb|ACA11504.1| 50S ribosomal protein L4 [Xylella fastidiosa M12]
          Length = 204

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 98/208 (47%), Gaps = 8/208 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++   D      + VS+ +F  +  + ++ +V+       R G    K RS+V+   
Sbjct: 1   MDLTIVGSDN----TLPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVS-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG AF   P      + +K    A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVAFAAKPRSFSQKVNRKQYRSAICSIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLPV 178
            + V+D    +  KTK    + ++L++    ++L+I   ++     L++RN+P +++  V
Sbjct: 116 RLKVVDAFDVEVSKTKVFAEKIKSLEVVGVGSSLLIVSDEISECLSLSSRNLPCVDVRSV 175

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           Q ++   ++    +VL+  A++ +E+  
Sbjct: 176 QALDPVALVGSDVVVLTVGAVKKIEEWL 203


>gi|212529840|ref|XP_002145077.1| 50S ribosomal protein L4 [Penicillium marneffei ATCC 18224]
 gi|210074475|gb|EEA28562.1| 50S ribosomal protein L4 [Penicillium marneffei ATCC 18224]
          Length = 298

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 5/182 (2%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           +  ++ +L R + ++  + R G + +K R +V  +G K+  QKGTG AR   K     RG
Sbjct: 93  VPLRRDLLHRAVVYEGDKTRQGTASTKWRDDVHGSGRKLAPQKGTGNARVGDKKSPIRRG 152

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA 145
           GG A GP P      LPKK+   A R ALS ++    ++V+DNL   E  + +   RF  
Sbjct: 153 GGVAHGPHPRDFSTDLPKKMYDKAWRIALSYRYTRGSLLVVDNLKMPENSSPWFWKRFFE 212

Query: 146 LDLSNA----LIIDGCQLDRNFQLA-ARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++              ++D +   A A    +  +L    ++V DIL+  KL++ K A++
Sbjct: 213 VNAWGKGHGGCTFVKDRMDEDLFGAIAEFQEHGRILDRPDLDVKDILKNGKLIIEKKALD 272

Query: 201 AL 202
            +
Sbjct: 273 KI 274


>gi|302851169|ref|XP_002957109.1| plastid/chloroplast ribosomal protein L4 [Volvox carteri f.
           nagariensis]
 gi|300257516|gb|EFJ41763.1| plastid/chloroplast ribosomal protein L4 [Volvox carteri f.
           nagariensis]
          Length = 246

 Score =  136 bits (343), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 4/208 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             +  +  DG +KG   ++  + A +  +G++ R L       R G + +K RSEV   G
Sbjct: 31  ATIPYKAADGSEKGNQQLALKV-AEESAKGLVHRYLVLVQQNARQGTASTKTRSEVRGGG 89

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S     F GGG  FGP P     ++ KK + LAL  AL       
Sbjct: 90  KKPYAQKGTGNARRGSSVSPLFPGGGVTFGPKPKDWKISMNKKEKRLALATALQSAAADM 149

Query: 122 DIMVIDNLVSKECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            ++   +   KE KTK +V    +  A  +S  +++       +  LA RNI  +     
Sbjct: 150 IVVESLDGKLKETKTKEMVALLEKLGADVMSRKVLLITKDARPDLHLAGRNIAKLTFNTA 209

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +NV DIL    +++   A+  ++   
Sbjct: 210 SSLNVLDILHADHIIVEDEALAHIQATL 237


>gi|126654433|ref|ZP_01726173.1| 50S ribosomal protein L4 [Bacillus sp. B14905]
 gi|126589120|gb|EAZ83317.1| 50S ribosomal protein L4 [Bacillus sp. B14905]
          Length = 142

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/139 (43%), Positives = 78/139 (56%)

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LAL+ ALS K    + +V+D
Sbjct: 3   KGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLD 62

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
            L     KTK      + L L    +     LD N  L+ARNIP + +L   GINV D+L
Sbjct: 63  ALTLAAPKTKEFTKILKDLSLEKKSLFVTADLDENVALSARNIPGVTVLTANGINVLDLL 122

Query: 188 RCSKLVLSKSAIEALEDRF 206
              K+V +KSA+E +E+  
Sbjct: 123 GHEKVVFTKSAVEKVEEVL 141


>gi|28198354|ref|NP_778668.1| 50S ribosomal protein L4 [Xylella fastidiosa Temecula1]
 gi|182680995|ref|YP_001829155.1| 50S ribosomal protein L4 [Xylella fastidiosa M23]
 gi|46577239|sp|Q87E81|RL4_XYLFT RecName: Full=50S ribosomal protein L4
 gi|226731447|sp|B2I8H0|RL4_XYLF2 RecName: Full=50S ribosomal protein L4
 gi|28056424|gb|AAO28317.1| 50S ribosomal protein L4 [Xylella fastidiosa Temecula1]
 gi|182631105|gb|ACB91881.1| ribosomal protein L4/L1e [Xylella fastidiosa M23]
 gi|307579464|gb|ADN63433.1| 50S ribosomal protein L4 [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 202

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 98/206 (47%), Gaps = 6/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++   D      + VS+ +F  +  + ++ +V+       R G    K RS+V+   
Sbjct: 1   MDLTIVGSDN----TLPVSDVVFGREFSEALVHQVVVAYRNTARSGTKAQKSRSQVS-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG AF   P      + +K    A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVAFAAKPRSFSQKVNRKQYRSAICSIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + V+D    +  KT+    + ++L++  ++L+I   ++     L++RN+P +++  VQ 
Sbjct: 116 RLKVVDAFDVEVSKTRVFAEKIKSLEVVGSSLLIVSDEISECLSLSSRNLPCVDVRSVQA 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++   ++    +VL+  A++ +E+  
Sbjct: 176 LDPVALVGSDVVVLTVGAVKKIEEWL 201


>gi|224373648|ref|YP_002608020.1| 50S ribosomal protein L4 [Nautilia profundicola AmH]
 gi|223588448|gb|ACM92184.1| ribosomal protein L4/L1 family [Nautilia profundicola AmH]
          Length = 193

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           + + V            + ED          L   ++     +R G + +K R EV+  G
Sbjct: 1   MSIEVIKQ---------LPEDF--QNINPHNLYLYVKAYLANQRAGTAHTKTRGEVSGGG 49

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKG GRAR  S    QF GGG A GP         L KK + +AL++AL++K  +
Sbjct: 50  KKPFRQKGLGRARQGSIRAPQFVGGGVAHGPRNERDWSQKLNKKQKRVALKYALNEKAEN 109

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D++  +  KTK      + ++  +  +I   ++D    LA RNIPN+ ++  + 
Sbjct: 110 GKLFVVDSIKIESGKTKDATKWLKEINQRD-YLIVVDEMDEKTFLAFRNIPNVYIITPEE 168

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           +N Y       ++  K+A E +  
Sbjct: 169 LNAYYASVFHSIIFDKAAYEKVIK 192


>gi|240980762|ref|XP_002403536.1| ribosomal protein L4, putative [Ixodes scapularis]
 gi|215491369|gb|EEC01010.1| ribosomal protein L4, putative [Ixodes scapularis]
          Length = 295

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 8/203 (3%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++  ++ E  G++ +   IFA  P+   L   + WQ   +R+  + ++ R+E    G K 
Sbjct: 78  NLDTVESEKLGLVPLHPKIFAGFPRIDTLHWNIHWQKNYQRVDWATAQTRAERRGGGRKP 137

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKGTGRARH S    Q++GGG + GP  P    + LP   R   L  ALS KF     
Sbjct: 138 WPQKGTGRARHGSIRAPQWKGGGVSMGPRGPRTYFYMLPFFRRVEGLITALSVKFAQVTE 197

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183
           M+   L      T    +                 + +N  +A   I ++N++PV G+NV
Sbjct: 198 MLCTFL-----CTSRATSHSSRFGWHCFR--STDYVPKNIAVACDQIKHMNIMPVYGLNV 250

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
           + +L+   LVL+ SA E +E + 
Sbjct: 251 HSMLKYDTLVLTLSAAEEIEAKL 273


>gi|149195352|ref|ZP_01872438.1| 50S ribosomal protein L4 [Caminibacter mediatlanticus TB-2]
 gi|149134484|gb|EDM22974.1| 50S ribosomal protein L4 [Caminibacter mediatlanticus TB-2]
          Length = 195

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 91/204 (44%), Gaps = 11/204 (5%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           + + ++ ++        + ED          L   ++     +R G + +K R EV+  G
Sbjct: 1   MSVEIKKIN-------QLPEDFQG--INPHNLYLYVKAYLANQRAGTAHTKTRGEVSGGG 51

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKG GRAR  S     F GGG A GP         L KK + +AL++AL++K  +
Sbjct: 52  KKPFRQKGLGRARQGSIRAPHFVGGGVAHGPRNERDWSQKLNKKQKRVALKYALNEKAEN 111

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             I V+  +  +  KTK  V      +  +  +I    +D    LA RNIPN+ ++  + 
Sbjct: 112 EKIYVVPEVKIESGKTKDAVKWLNNFNERD-YLIVVDNMDEKTYLAFRNIPNVYIITPEE 170

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           +N Y       ++  ++A + +  
Sbjct: 171 LNAYYASVFKSIIFDEAAFDKVIK 194


>gi|154310648|ref|XP_001554655.1| hypothetical protein BC1G_06798 [Botryotinia fuckeliana B05.10]
 gi|150851338|gb|EDN26531.1| hypothetical protein BC1G_06798 [Botryotinia fuckeliana B05.10]
          Length = 211

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 8/185 (4%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ +L R + ++    R G + SK R +V  +  K+  QKGTG AR   +      G
Sbjct: 16  LPLRRDLLHRAVVFEGDNTRQGTASSKTRFDVHGSHRKIRPQKGTGGARLGWRQSPLIVG 75

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLVTRFR 144
           GGK+FGP P      LP+K+  +A R ALS ++    ++V  D +  +  KT+Y    F 
Sbjct: 76  GGKSFGPHPRDFGTDLPRKMYDIAWRTALSWRYRKGQLIVCEDGMEFEHPKTRYAKRVFE 135

Query: 145 ALDLSNAL----IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200
            L          I+ G        + ++N  +  +L V  ++V D+L  S++V+ KSA++
Sbjct: 136 HLGWGKNNGRTLIVTGGFRKNLSSVVSKN--DATVLDVNEVDVKDLLELSRVVIEKSALD 193

Query: 201 A-LED 204
             LE+
Sbjct: 194 QMLEE 198


>gi|157415928|ref|YP_001483184.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81116]
 gi|172047270|sp|A8FP20|RL4_CAMJ8 RecName: Full=50S ribosomal protein L4
 gi|157386892|gb|ABV53207.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81116]
 gi|216408654|gb|ACJ73010.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|307748566|gb|ADN91836.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni M1]
 gi|315931326|gb|EFV10295.1| ribosomal protein L4/L1 family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 204

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|196228456|ref|ZP_03127323.1| ribosomal protein L4/L1e [Chthoniobacter flavus Ellin428]
 gi|196227859|gb|EDY22362.1| ribosomal protein L4/L1e [Chthoniobacter flavus Ellin428]
          Length = 203

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 4/205 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +   V  ++      I V   +   K  Q ++   +      +R G +  K ++ V  +G
Sbjct: 1   MAAKVLTVEAAKAAKIEV---VENGKYSQ-VIHDTVTALRANRRSGTASVKTKATVNGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR   KS   + GGG  FGP P      + K V+ LALR ALS++  S 
Sbjct: 57  AKPWRQKGTGRARAGYKSSPVWVGGGVVFGPHPRDYSKKVAKSVKKLALRKALSERIKSG 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+ ++D    KE KTK        +      ++     D+N  L+ARN+    L+    +
Sbjct: 117 DVFIVDEFAIKEPKTKQFAAAIALITEEPKTLVVSAAFDKNTYLSARNVQPAQLITASEV 176

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           N   +L   K+V++   +  + DR 
Sbjct: 177 NTEQLLNFRKIVITNDGLAQIADRL 201


>gi|216408922|gb|ACJ73144.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408924|gb|ACJ73145.1| ribosomal protein L4 [Campylobacter coli]
          Length = 204

 Score =  135 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ + 
Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDIS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y I   + +++ KSA+E++  
Sbjct: 178 EVNAYLISVFNAVIIEKSALESITK 202


>gi|282891948|ref|ZP_06300427.1| hypothetical protein pah_c200o112 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498208|gb|EFB40548.1| hypothetical protein pah_c200o112 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 227

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 20/226 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  L V ++ G + G + V       +    ++   +       R   + +KGRSEV ++
Sbjct: 1   MALLKVFDIKGNEVGELEVDSTFAEAQINSQVVKDYVTALRANARQWSANTKGRSEVKHS 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
             K + QKG GRAR  S    Q+RGGG+ FGP P    H  + KK R   +R  + +K  
Sbjct: 61  TKKPHPQKGGGRARQGSLVAPQYRGGGRVFGPKPKFDQHVRINKKERKAVIRFLIGEKIR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-------------------QLD 160
           +N + V+ +   +E KTK++        +S   +  G                    +  
Sbjct: 121 NNALTVVQDFHMEEPKTKHVADFLEKQGISGRTLFIGEGNFVQVGNDNDGKKVSVRCEQH 180

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            NF  + RN+  I       ++ YD++    +++  SA+E L++  
Sbjct: 181 DNFIKSIRNLQKIEFALTSHVSGYDVIVAKNMIVGASALEQLKEWL 226


>gi|32307492|gb|AAP79151.1| ribosomal protein rpL4 [Bigelowiella natans]
          Length = 335

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 3/208 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L V+N DG+  G   +S  +   +  +G++ R L +     R G + +K +SEV   G
Sbjct: 112 VKLEVKNFDGQVVGSDDMSLKVARPETAKGLVHRYLMYARNSMRAGTASTKTKSEVRGGG 171

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QK TG AR  S+      GGG  FGP P      + +K R +A+  AL       
Sbjct: 172 KKPYQQKKTGNARQGSRRTPLKPGGGIIFGPKPRDWSVDMNQKERRIAMATALQSASSDV 231

Query: 122 DIMVIDNLVSKECKTKYLVTRFRA---LDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            ++   +   +  KTK +               +++      RN  L+ARNI  + +   
Sbjct: 232 ILVEDLDGKFESPKTKNMADFLDRVGAKPSEEKVLLVVEGQKRNALLSARNIDKLKINKP 291

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             + + D+L   K+++ K A E +++ F
Sbjct: 292 TSLRIIDVLGADKIIMEKKAFETMKNIF 319


>gi|216408856|gb|ACJ73111.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDAKAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|216408896|gb|ACJ73131.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408898|gb|ACJ73132.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408900|gb|ACJ73133.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK   T  + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|121612191|ref|YP_001001350.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148926797|ref|ZP_01810476.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|167006239|ref|ZP_02271997.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|166234652|sp|A1W1V9|RL4_CAMJJ RecName: Full=50S ribosomal protein L4
 gi|121504148|gb|EAQ72729.2| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|145844522|gb|EDK21629.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|216408666|gb|ACJ73016.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408668|gb|ACJ73017.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408670|gb|ACJ73018.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408672|gb|ACJ73019.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408674|gb|ACJ73020.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408676|gb|ACJ73021.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408678|gb|ACJ73022.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408680|gb|ACJ73023.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408682|gb|ACJ73024.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408834|gb|ACJ73100.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408836|gb|ACJ73101.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408838|gb|ACJ73102.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408840|gb|ACJ73103.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408858|gb|ACJ73112.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408860|gb|ACJ73113.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408862|gb|ACJ73114.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408888|gb|ACJ73127.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408890|gb|ACJ73128.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408918|gb|ACJ73142.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408920|gb|ACJ73143.1| ribosomal protein L4 [Campylobacter coli]
          Length = 204

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|315125091|ref|YP_004067095.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|216408818|gb|ACJ73092.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408926|gb|ACJ73146.1| ribosomal protein L4 [Campylobacter coli]
 gi|315018813|gb|ADT66906.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 204

 Score =  134 bits (338), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK   T  + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|216408928|gb|ACJ73147.1| ribosomal protein L4 [Campylobacter coli]
          Length = 204

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|216408866|gb|ACJ73116.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKNANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|332178456|gb|AEE14145.1| ribosomal protein L4/L1e [Thermodesulfobium narugense DSM 14796]
          Length = 203

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 3/201 (1%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           +SV +L+G     I  +     +K    ++   +  +    R G + +K R EV   G K
Sbjct: 2   ISVYDLEGNKVKEIESNLT--GIKDNSHVVYMQVVRELAGMRSGSACTKTRGEVRGGGKK 59

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QK TGRARH S     +R GG  FGP P     +LPKKV  L+   AL +    +  
Sbjct: 60  PYAQKHTGRARHGSIRSPIWRKGGITFGPKPRKYSFSLPKKVIKLSRNIALKNLIDQDRF 119

Query: 124 MVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +V++NL + E K K+     +     +   +I       N   A  N+PN  ++ V  + 
Sbjct: 120 IVVENLSNIEPKAKFASNFVKKLPGENCKSLIVIDDYFENVMRAFANLPNFKIVDVNNLK 179

Query: 183 VYDILRCSKLVLSKSAIEALE 203
           V DIL   +++L+  A+E LE
Sbjct: 180 VADILWSQRVILTPEALECLE 200


>gi|216408930|gb|ACJ73148.1| ribosomal protein L4 [Campylobacter coli]
          Length = 204

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLACRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|322378778|ref|ZP_08053207.1| 50S ribosomal protein L4 [Helicobacter suis HS1]
 gi|322380627|ref|ZP_08054779.1| 50S ribosomal protein L4 [Helicobacter suis HS5]
 gi|321146949|gb|EFX41697.1| 50S ribosomal protein L4 [Helicobacter suis HS5]
 gi|321148808|gb|EFX43279.1| 50S ribosomal protein L4 [Helicobacter suis HS1]
          Length = 206

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 4/202 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V +  G+  G + +       +     L   +++     R   +KSK R EV+  G
Sbjct: 1   MKARVLDQQGQATGTLDLPARY--QEINAHNLYLFVKYYRALARANTAKSKNRGEVSGGG 58

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL+ K  +
Sbjct: 59  RKPWSQKGGGRARAGSITSPVFVGGGVSHGATNERNYHLKINKKQKKLALEYALAQKALA 118

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           + ++V++N+     KTK      + L   + L+I    LD N  LA RN+PN  L+    
Sbjct: 119 DKLVVMENIQIPSKKTKDAHAFLKNLGFRDVLLIQHA-LDENSVLAFRNLPNCFLVESSE 177

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N Y +   S +++ +SA EAL
Sbjct: 178 VNGYIVAAFSAVIMERSAFEAL 199


>gi|154148894|ref|YP_001405698.1| 50S ribosomal protein L4 [Campylobacter hominis ATCC BAA-381]
 gi|166234650|sp|A7HZK7|RL4_CAMHC RecName: Full=50S ribosomal protein L4
 gi|153804903|gb|ABS51910.1| ribosomal protein L4/L1 family [Campylobacter hominis ATCC BAA-381]
          Length = 204

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E    + +  +          L   ++      R   + +KGRSEV+  
Sbjct: 1   MSKVKVLNEKLEKASELELPANF--ADVNPHNLYLYVKSYLASLRANTANTKGRSEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL++K  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNNRNYFQKVNKKQKRLALEFALNEKAQ 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++ I  +D+L     KTK      + L + +A +I   +LD    LA RN+ N  ++ + 
Sbjct: 119 NDKIFAVDSLEISSGKTKDAAKFIKNLGVRDA-LIVKNELDSATLLAYRNLNNCYVIDIN 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   S +++  SA++++  
Sbjct: 178 ELNAYLVAVYSAVIIETSALQSIVK 202


>gi|156086798|ref|XP_001610806.1| 50S ribosomal protein L4 [Babesia bovis T2Bo]
 gi|154798059|gb|EDO07238.1| 50S ribosomal protein L4, putative [Babesia bovis]
          Length = 364

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 8/194 (4%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGRA 73
              V  DIF L  +  IL R   +   R + G S+     + E   +  K   Q+ TG+A
Sbjct: 30  THQVPNDIFGLPLRPDILHRCYMFYR-RAKAGYSEDMQLYKWEWPGSTRKWRKQQKTGKA 88

Query: 74  RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133
           R   K       G  A    P      LP++V    L+  LS KF  + I ++D+ + K 
Sbjct: 89  RIGWKKSPGKYLGVFAHPIRPGDQRTKLPRRVLWTGLKIMLSAKFAQSQINLVDSFLMKS 148

Query: 134 CKTKYLVTRFR-----ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
            KTKY V   R       + +  +       + NF+ A  NIP + L  V+G+NVY++L+
Sbjct: 149 HKTKYAVCNLRRILGNNCNSALLVFCGNSDSNENFRWATANIPAVRLETVEGLNVYNLLK 208

Query: 189 CSKLVLSKSAIEAL 202
             +LV+++ A++ L
Sbjct: 209 YRQLVITEMALKKL 222


>gi|15837755|ref|NP_298443.1| 50S ribosomal protein L4 [Xylella fastidiosa 9a5c]
 gi|46396661|sp|Q9PE75|RL4_XYLFA RecName: Full=50S ribosomal protein L4
 gi|9106117|gb|AAF83963.1|AE003950_13 50S ribosomal protein L4 [Xylella fastidiosa 9a5c]
          Length = 202

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 96/206 (46%), Gaps = 6/206 (2%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++   D      + VS+ +F  +  + ++ +++       R G    K RS+V+   
Sbjct: 1   MDLTIVGSDN----TLPVSDVVFGREFSEALVHQIVVAYRNTARSGTKAQKSRSQVS-GT 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K   ++  G ARH + +   F GGG AF   P      + +K    A+    S+     
Sbjct: 56  TKKSKKQKGGGARHGALTAPIFVGGGVAFAAKPRSFSQKVNRKQYRSAICSIFSELNRQG 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            + V+D    +  KTK    + ++L++  + L+I    +     L++RN+P +++  VQ 
Sbjct: 116 RLKVVDAFDVEVSKTKVFAEKIKSLEVVGSRLLIVSDGISECLSLSSRNLPCVDVRSVQA 175

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           ++   ++    +VL+  A++ +E+  
Sbjct: 176 LDPVALVGSDVVVLTVGAVKKIEEWL 201


>gi|216408832|gb|ACJ73099.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408868|gb|ACJ73117.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408870|gb|ACJ73118.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408872|gb|ACJ73119.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408874|gb|ACJ73120.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408876|gb|ACJ73121.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408878|gb|ACJ73122.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408880|gb|ACJ73123.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408882|gb|ACJ73124.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408884|gb|ACJ73125.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408886|gb|ACJ73126.1| ribosomal protein L4 [Campylobacter coli]
 gi|283558013|gb|ADB27038.1| L4 ribosomal protein [Campylobacter coli]
          Length = 204

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|153952215|ref|YP_001398985.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166234651|sp|A7H655|RL4_CAMJD RecName: Full=50S ribosomal protein L4
 gi|152939661|gb|ABS44402.1| ribosomal protein L4 [Campylobacter jejuni subsp. doylei 269.97]
          Length = 204

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LA   AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLAFERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + + LI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDVLIVKDL-LDEKTLLAYRNLANCYVVDVA 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|216408820|gb|ACJ73093.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408822|gb|ACJ73094.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408824|gb|ACJ73095.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408830|gb|ACJ73098.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408842|gb|ACJ73104.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408912|gb|ACJ73139.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408914|gb|ACJ73140.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|11467470|ref|NP_043616.1| ribosomal protein L4 [Odontella sinensis]
 gi|1350651|sp|P49546|RK4_ODOSI RecName: Full=50S ribosomal protein L4, chloroplastic
 gi|1185165|emb|CAA91648.1| 50S ribosomal protein L4 [Odontella sinensis]
          Length = 215

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 4/203 (1%)

Query: 7   RNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
            +++G+       +  ++        ++ + +      +R G   +K RSEV   G K +
Sbjct: 12  VDINGKTLSDEYKLELNVLEKSGN-YLIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPW 70

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRAR  S     ++GGG  FGP P   +  L KK R LAL+  L +K  +  I+ 
Sbjct: 71  RQKGTGRARAGSSRSPLWKGGGVIFGPKPRKIILKLNKKERKLALQTLLYNKRNNISIID 130

Query: 126 IDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183
                    KTK   +  +  +++    ++I   +     +LA RNI N+ L+    +N 
Sbjct: 131 NLETNLDLPKTKTFYSLCKNCEINLDQKILIIVGEKTIPLKLATRNIKNVELILASNLNT 190

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
           + +L+  +++++  A++ +++ +
Sbjct: 191 FSLLKAKQILMTPLAVKDIKEIY 213


>gi|283956162|ref|ZP_06373647.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792316|gb|EFC31100.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 1336]
          Length = 204

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHAKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+LV +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLVIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|108863178|gb|ABG22154.1| 50S ribosomal protein L4 [Campylobacter jejuni]
 gi|216408844|gb|ACJ73105.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408846|gb|ACJ73106.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408848|gb|ACJ73107.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408850|gb|ACJ73108.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408852|gb|ACJ73109.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408854|gb|ACJ73110.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNIWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|315639320|ref|ZP_07894482.1| 50S ribosomal protein L4 [Campylobacter upsaliensis JV21]
 gi|315480646|gb|EFU71288.1| 50S ribosomal protein L4 [Campylobacter upsaliensis JV21]
          Length = 204

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNEKFEKSGELELPAKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNEKNYFQKVNKKQKRLALERALADKAI 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            N + + D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KNTLFMTDSLNIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|222823104|ref|YP_002574677.1| 50S ribosomal protein L4 [Campylobacter lari RM2100]
 gi|254803723|sp|B9KEE1|RL4_CAMLR RecName: Full=50S ribosomal protein L4
 gi|222538325|gb|ACM63426.1| 50S ribosomal protein L4 [Campylobacter lari RM2100]
          Length = 204

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N   E    + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVTVLNDKFEKASELDLPAKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNNRNYFQKVNKKQKRLALERALEDKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            N +  +D+L  +  KTK      + L L + LI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KNALFSVDSLSIESGKTKDANAVIKKLGLKDVLIVKDL-LDEKTLLAFRNLANCYVVDVN 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ K+A+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKAALESIVK 202


>gi|216408864|gb|ACJ73115.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAYTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|216408686|gb|ACJ73026.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408688|gb|ACJ73027.1| ribosomal protein L4 [Campylobacter coli]
          Length = 204

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERSYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|330899736|gb|EGH31155.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 154

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRH 112
            RS+V   G + + QKGTGRAR  +     +RGGG  F   P      L KK+   ALR 
Sbjct: 1   TRSDVRGGGKRPWRQKGTGRARAGTIRSPIWRGGGTTFAARPQDHTQKLNKKMYRAALRS 60

Query: 113 ALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172
            L++   ++ ++V+ +   +  KTK L+ +   + L++  +I    +D+N  LAARN+P+
Sbjct: 61  ILAELVRTDRLVVVQDFAVEAPKTKDLLNKLTGMGLTDV-LIVSDAVDQNLYLAARNLPH 119

Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +++  VQG +   ++   K++++ SA++  E+  
Sbjct: 120 VDVRDVQGSDPVSLIAYDKVLITVSAVKKFEELL 153


>gi|216408588|gb|ACJ72977.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408590|gb|ACJ72978.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408592|gb|ACJ72979.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|156058474|ref|XP_001595160.1| hypothetical protein SS1G_03249 [Sclerotinia sclerotiorum 1980]
 gi|154701036|gb|EDO00775.1| hypothetical protein SS1G_03249 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 211

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 5/183 (2%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ +L R + ++    R G + SK R +V  +  K+  QKGTG AR   K      G
Sbjct: 16  LPLRRDLLHRAVIFEGDNTRQGTASSKTRWDVHGSHRKVRPQKGTGSARLGWKQSPLIVG 75

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKECKTKYLVTRFR 144
           GGK+FGP P      LP+K+  +A R ALS ++    ++V  D +  +  KT+Y    F 
Sbjct: 76  GGKSFGPHPRDFGTDLPRKMYDIAWRTALSWRYRRGQLIVCEDGMTFEYPKTRYAKKVFE 135

Query: 145 ALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201
            L     +   +I      +N   +  +  +  +L V  ++V D+L  S++V+ KSA++ 
Sbjct: 136 DLGWGKQNGRTLIVTDGFRKNLS-SVVDKHDATVLEVSDVDVKDLLELSRVVIEKSALDH 194

Query: 202 LED 204
           + +
Sbjct: 195 ILE 197


>gi|216408826|gb|ACJ73096.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408828|gb|ACJ73097.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408894|gb|ACJ73130.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ + 
Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDIS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|57238713|ref|YP_179844.1| 50S ribosomal protein L4 [Campylobacter jejuni RM1221]
 gi|205355720|ref|ZP_03222490.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|305432599|ref|ZP_07401760.1| ribosomal protein L4/L1 family protein [Campylobacter coli JV20]
 gi|81557380|sp|Q5HS91|RL4_CAMJR RecName: Full=50S ribosomal protein L4
 gi|57167517|gb|AAW36296.1| ribosomal protein L4 [Campylobacter jejuni RM1221]
 gi|108863172|gb|ABG22151.1| 50S ribosomal protein L4 [Campylobacter coli]
 gi|108863174|gb|ABG22152.1| 50S ribosomal protein L4 [Campylobacter coli]
 gi|108863176|gb|ABG22153.1| 50S ribosomal protein L4 [Campylobacter coli]
 gi|205346497|gb|EDZ33130.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|216408546|gb|ACJ72956.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408548|gb|ACJ72957.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408550|gb|ACJ72958.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408552|gb|ACJ72959.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408554|gb|ACJ72960.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408556|gb|ACJ72961.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408558|gb|ACJ72962.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408560|gb|ACJ72963.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408562|gb|ACJ72964.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408564|gb|ACJ72965.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408566|gb|ACJ72966.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408568|gb|ACJ72967.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408570|gb|ACJ72968.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408572|gb|ACJ72969.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408574|gb|ACJ72970.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408576|gb|ACJ72971.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408578|gb|ACJ72972.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408580|gb|ACJ72973.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408582|gb|ACJ72974.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408584|gb|ACJ72975.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408586|gb|ACJ72976.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408656|gb|ACJ73011.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408658|gb|ACJ73012.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408660|gb|ACJ73013.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408662|gb|ACJ73014.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408690|gb|ACJ73028.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408692|gb|ACJ73029.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408694|gb|ACJ73030.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408696|gb|ACJ73031.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408698|gb|ACJ73032.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408700|gb|ACJ73033.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408702|gb|ACJ73034.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408704|gb|ACJ73035.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408706|gb|ACJ73036.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408708|gb|ACJ73037.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408710|gb|ACJ73038.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408712|gb|ACJ73039.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408714|gb|ACJ73040.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408716|gb|ACJ73041.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408718|gb|ACJ73042.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408720|gb|ACJ73043.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408722|gb|ACJ73044.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408724|gb|ACJ73045.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408726|gb|ACJ73046.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408728|gb|ACJ73047.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408730|gb|ACJ73048.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408732|gb|ACJ73049.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408734|gb|ACJ73050.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408736|gb|ACJ73051.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408738|gb|ACJ73052.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408740|gb|ACJ73053.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408742|gb|ACJ73054.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408744|gb|ACJ73055.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408746|gb|ACJ73056.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408748|gb|ACJ73057.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408750|gb|ACJ73058.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408752|gb|ACJ73059.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408754|gb|ACJ73060.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408756|gb|ACJ73061.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408758|gb|ACJ73062.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408760|gb|ACJ73063.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408762|gb|ACJ73064.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408764|gb|ACJ73065.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408766|gb|ACJ73066.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408768|gb|ACJ73067.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408770|gb|ACJ73068.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408772|gb|ACJ73069.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408774|gb|ACJ73070.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408776|gb|ACJ73071.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408778|gb|ACJ73072.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408780|gb|ACJ73073.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408782|gb|ACJ73074.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408784|gb|ACJ73075.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408786|gb|ACJ73076.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408788|gb|ACJ73077.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408790|gb|ACJ73078.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408792|gb|ACJ73079.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408794|gb|ACJ73080.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408796|gb|ACJ73081.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408798|gb|ACJ73082.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408800|gb|ACJ73083.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408802|gb|ACJ73084.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408804|gb|ACJ73085.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408806|gb|ACJ73086.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408808|gb|ACJ73087.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408810|gb|ACJ73088.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408812|gb|ACJ73089.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408814|gb|ACJ73090.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408816|gb|ACJ73091.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408902|gb|ACJ73134.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408916|gb|ACJ73141.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408934|gb|ACJ73150.1| ribosomal protein L4 [Campylobacter coli]
 gi|283558005|gb|ADB27034.1| L4 ribosomal protein [Campylobacter coli]
 gi|283558009|gb|ADB27036.1| L4 ribosomal protein [Campylobacter coli]
 gi|283558011|gb|ADB27037.1| L4 ribosomal protein [Campylobacter coli]
 gi|304444310|gb|EFM36962.1| ribosomal protein L4/L1 family protein [Campylobacter coli JV20]
 gi|315059152|gb|ADT73481.1| LSU ribosomal protein L4p [Campylobacter jejuni subsp. jejuni S3]
          Length = 204

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|297621719|ref|YP_003709856.1| 50S ribosomal protein L4 [Waddlia chondrophila WSU 86-1044]
 gi|297377020|gb|ADI38850.1| 50S ribosomal protein L4 [Waddlia chondrophila WSU 86-1044]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 20/226 (8%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M EL   NL+G++ G +  +  I        ++   +       R   + +KGRSEV +T
Sbjct: 1   MTELKKYNLEGKETGSVEANAKITESSIHSQLIKEYIVAIRKNARQWSANTKGRSEVKHT 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
             K + QKGTGRAR  S    QFRGGG  FGP P    H  + KK +  A+R  L +   
Sbjct: 61  TKKPHRQKGTGRARQGSLVAPQFRGGGVVFGPKPKFDQHVRINKKEKRSAIRFLLGEMMR 120

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-------------------QLD 160
            N ++V++N +  + KTK L    +  +L   ++                          
Sbjct: 121 ENRMIVLENAMMDKPKTKTLAAFIKKANLGKRVLFLAEGKHEEIQTAHKTVAVSVKCNDH 180

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            NF+ +  NIP       + +N YD++    +V++++A+E +    
Sbjct: 181 ENFRKSLNNIPKTQFALAKNVNGYDLMLADNIVVTEAALEEINHWL 226


>gi|313616904|gb|EFR89557.1| ribosomal protein L4/L1 family [Listeria innocua FSL S4-378]
          Length = 131

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/125 (40%), Positives = 72/125 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LS+   DG + G I++++ +F ++P + ++  V+  Q    R G  K K RSEV   
Sbjct: 1   MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIXSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120

Query: 121 NDIMV 125
             ++V
Sbjct: 121 EKLVV 125


>gi|315453734|ref|YP_004074004.1| 50S ribosomal protein L4 [Helicobacter felis ATCC 49179]
 gi|315132786|emb|CBY83414.1| 50S ribosomal protein L4 [Helicobacter felis ATCC 49179]
          Length = 202

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 4/202 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++  V N   E  G + +       + ++  L   +++   + R   +++K R  V+  G
Sbjct: 1   MKAKVLNQHCEQVGELELPAHF--KEIKEHNLYLYVKYYRAQARANSAQTKNRGAVSGGG 58

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCS 120
            K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL  K  +
Sbjct: 59  KKPWNQKGGGRARAGSITSPIFVGGGVSHGATNERNYDLKINKKQKKLALEYALGQKALA 118

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++++D +     KTK      +     + L++    L+    LA RN+PN  L+    
Sbjct: 119 EKLLIVDKVDISSKKTKDAHAFLQKFGFRDVLLVTHA-LEEYNFLAFRNLPNCYLIEASE 177

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N Y +   + +V+ KSA +A 
Sbjct: 178 LNAYLVATYNAVVIEKSAFDAF 199


>gi|216408904|gb|ACJ73135.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408906|gb|ACJ73136.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408908|gb|ACJ73137.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408910|gb|ACJ73138.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVVKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|216408932|gb|ACJ73149.1| ribosomal protein L4 [Campylobacter coli]
 gi|283558007|gb|ADB27035.1| L4 ribosomal protein [Campylobacter coli]
          Length = 204

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--TEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|216408664|gb|ACJ73015.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVPVFNAVIMEKSALESITK 202


>gi|242762080|ref|XP_002340306.1| 50S ribosomal protein L4 [Talaromyces stipitatus ATCC 10500]
 gi|218723502|gb|EED22919.1| 50S ribosomal protein L4 [Talaromyces stipitatus ATCC 10500]
          Length = 299

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 5/182 (2%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           +  ++ +L R + ++  + R G + +K R +V  +G K+  QKGTG AR   K     RG
Sbjct: 94  VPLRRDLLHRAVVYEGDKTRQGTASTKWRDDVHGSGRKLAPQKGTGNARVGDKKSPIRRG 153

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA 145
           GG A GP P      LP+KV   A R ALS ++    ++V+DN+ + +  + +   RF  
Sbjct: 154 GGVAHGPHPRDFSTDLPRKVYDKAWRIALSYRYTRGQLLVVDNIQTPDNSSPWFWKRFFE 213

Query: 146 LDLSNA----LIIDGCQLDRNFQLAARNIP-NINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++L             ++D +   A      +  +L    ++V DIL+  K+++ + A+ 
Sbjct: 214 VNLWGKNHGGCTFVKDRMDEDLFGAISEFKQHARILDRPDLDVKDILKNGKMIIEQKALN 273

Query: 201 AL 202
            +
Sbjct: 274 KI 275


>gi|216408684|gb|ACJ73025.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   ++L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTANSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|161511519|ref|NP_852834.2| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(low)]
 gi|3914747|sp|O52333|RL4_MYCGA RecName: Full=50S ribosomal protein L4
 gi|2766504|gb|AAB95388.1| ribosomal protein L4 [Mycoplasma gallisepticum]
 gi|284811865|gb|AAP56402.2| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(low)]
 gi|284930295|gb|ADC30234.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. R(high)]
 gi|284931062|gb|ADC31000.1| 50S ribosomal protein L4 [Mycoplasma gallisepticum str. F]
          Length = 209

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 106/208 (50%), Gaps = 2/208 (0%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + +L G+ +  I +++ +   +  +  +   +  ++  +  G   +  + EV+  
Sbjct: 1   MSKIKLFDLSGKVQEEIELNQKLLVSEVHKQAIFDAILAENLSQIQGTHSTLKKGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K Y QK TGRAR  S     + GGG AFGP P       + KKV SLA + A++ K  
Sbjct: 61  GKKPYQQKHTGRARQGSIRNPHYVGGGIAFGPKPNRNYKIKVNKKVSSLAFKSAITSKVN 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
           +N+ + ++D++   +  TK +    + L ++  ++I   + + N + ++ N+PN++    
Sbjct: 121 NNEFLGLVDSIKQDKPSTKAIAKLLKELKVNKKVLIVAFEKNENLEKSSANLPNVSYKLW 180

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             ++V D++  + ++  KSAI    +R 
Sbjct: 181 NQVSVKDLIDANCVLAQKSAINNWVERL 208


>gi|269991356|emb|CAX12540.1| 50S ribosomal protein L4 [Fucus vesiculosus]
          Length = 215

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 98/199 (49%), Gaps = 5/199 (2%)

Query: 11  GEDKGVISVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
            E K  I+++  +    +    ++ R    Q   +R G + +  R+EV   G K   QKG
Sbjct: 17  NESKDKITLTLKVKDANETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKG 76

Query: 70  TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129
            GRAR  S     ++GGG +FGP P +  + + +K   L LR  L  K   N+I+++DNL
Sbjct: 77  MGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISK--QNNIIIVDNL 134

Query: 130 VSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
              E KTK ++   +  +++     +    ++++N   +  NI  I L     +N+  IL
Sbjct: 135 NITEYKTKNIIKILKIFNINLSEKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQIL 194

Query: 188 RCSKLVLSKSAIEALEDRF 206
               L+++K +++ +ED +
Sbjct: 195 LAKNLLVTKDSLKIIEDTY 213


>gi|12045005|ref|NP_072815.1| 50S ribosomal protein L4 [Mycoplasma genitalium G37]
 gi|255660300|ref|ZP_05405709.1| 50S ribosomal protein L4 [Mycoplasma genitalium G37]
 gi|1350753|sp|P47398|RL4_MYCGE RecName: Full=50S ribosomal protein L4
 gi|3844746|gb|AAC71370.1| ribosomal protein L4/L1 family [Mycoplasma genitalium G37]
 gi|166078857|gb|ABY79475.1| ribosomal protein L4/L1 family [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 211

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 4/211 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L V   DG  KG I  +  +   K     +   +  +    R G   +  + EV+  
Sbjct: 1   MAKLKVIQFDGSFKGEIQPANHLLLKKAVIQPVFDAILLEQAACRQGTHSTLTKGEVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K Y QK TG+AR  S     + GGG  FGP P       L KK   LAL  A + K  
Sbjct: 61  GKKPYKQKHTGKARQGSIRNPHYVGGGVVFGPKPNRNYKLKLNKKAYQLALTSAFAQKLN 120

Query: 120 SNDIMVIDNLVSKE--CKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLL 176
           +N ++V +  + ++   KTK ++T  +        L+     + +   L+  N+  I + 
Sbjct: 121 NNQVIVAEAKLFEQTNAKTKKMLTFLKNAKLTEQKLLFVIDTISKPLLLSTNNLKQIVVK 180

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
               ++V D+L    +++ K+A   LE+R K
Sbjct: 181 QFNKVSVRDLLLAKTIIIEKAAFTKLEERLK 211


>gi|330850883|ref|YP_004376633.1| 50S ribosomal protein L4 [Fistulifera sp. JPCC DA0580]
 gi|328835703|dbj|BAK18999.1| 50S ribosomal protein L4 [Fistulifera sp. JPCC DA0580]
          Length = 215

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 4/203 (1%)

Query: 7   RNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
            N+ G+       +  ++        +L + L      +R G   +K RSEV   G K +
Sbjct: 12  LNVYGKQTDFNDELKLNVLETSGN-YLLHKDLLRHLNSQRQGTVSTKTRSEVRGGGRKPW 70

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRAR  S     ++GGG  FGP P      + KK R LAL+  + +K     I+ 
Sbjct: 71  RQKGTGRARAGSNRSPLWKGGGVTFGPKPRQFELKVNKKERRLALQTLIYNKRNKLVIIN 130

Query: 126 IDNLVSKECKTKYLVTRFRALD--LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183
                  E KTK  +   +  +  +   +++   +     +LA +N+ N+ L+    +N 
Sbjct: 131 NLESDLTEPKTKAFLKICKDCEISMDQKILVVTSKKTPTLKLATQNLKNVELISAGHLNT 190

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
             +LR  +++L+  AI  +++ +
Sbjct: 191 LSLLRAQQIILTPLAINDIKEIY 213


>gi|283953683|ref|ZP_06371214.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 414]
 gi|283794724|gb|EFC33462.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni 414]
          Length = 204

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKGV 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGALFTADSLAIESGKTKDANAVIKKLGIKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|57505355|ref|ZP_00371284.1| ribosomal protein L4/L1 family [Campylobacter upsaliensis RM3195]
 gi|57016491|gb|EAL53276.1| ribosomal protein L4/L1 family [Campylobacter upsaliensis RM3195]
          Length = 204

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +K RS+V+  
Sbjct: 1   MSKIVVLNEKFEKSGELELPVKY--AEVNPHNLYLYVKSYLASLRANTAHTKDRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNEKNYFQKVNKKQKRLALERALADKAI 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            N + + D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KNTLFMTDSLNIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIIEKSALESITK 202


>gi|119478686|ref|XP_001259414.1| 50S ribosomal protein L4 [Neosartorya fischeri NRRL 181]
 gi|119407568|gb|EAW17517.1| 50S ribosomal protein L4 [Neosartorya fischeri NRRL 181]
          Length = 291

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ IL R + ++    R G + +K R +V  +G K+Y QKGTGRAR   K     RGG
Sbjct: 93  PLRKDILHRAVVYEGDMTRQGTASTKWRDDVHGSGRKLYAQKGTGRARVGDKKSPIRRGG 152

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFRA 145
           G AFGP P     +LP+K+   A R ALS ++    +++IDN +   E  T +L+     
Sbjct: 153 GVAFGPHPRDFATSLPQKIYDQAWRIALSYRYKRGQLIIIDNEISIPEGATPHLIKEIFK 212

Query: 146 LDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++          +   QL+       R +  +  +L  + ++V D+L   +LV+ K A++
Sbjct: 213 VNCWGREFGRSTLITDQLNEGLFETVREVGEHAKILNRKDVDVKDLLETGRLVIEKQALD 272

Query: 201 AL 202
            +
Sbjct: 273 RI 274


>gi|108863168|gb|ABG22149.1| 50S ribosomal protein L4 [Campylobacter coli]
 gi|108863170|gb|ABG22150.1| 50S ribosomal protein L4 [Campylobacter coli]
          Length = 204

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNSHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KSA+E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSALESITK 202


>gi|118411059|ref|YP_874454.1| 50S ribosomal protein L4 [Phaeodactylum tricornutum]
 gi|125987629|sp|A0T0H9|RK4_PHATC RecName: Full=50S ribosomal protein L4, chloroplastic
 gi|116739806|gb|ABK20677.1| 50S ribosomal protein L4 [Phaeodactylum tricornutum]
          Length = 215

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 4/203 (1%)

Query: 7   RNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
            +L+G+       +  +I        ++ + L      +R   S SK RSEV   G K +
Sbjct: 12  LDLNGKQLNFNHELKLNILETSGN-YLVHKDLIRHFGSQRQATSSSKTRSEVRGGGRKPW 70

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTG+AR  S     ++GGG  FGP P      L KK R LAL+  + +K  +  I+ 
Sbjct: 71  RQKGTGKARAGSNRSPLWKGGGVIFGPKPKKISLKLNKKERQLALQTLIYNKKNNILIIE 130

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN--FQLAARNIPNINLLPVQGINV 183
                  E KTK  V   +   ++    +     D+    +LA +N+ N+ LL    +N 
Sbjct: 131 NLETGMTEPKTKAFVKICQDCQINLEQKVLLVVTDKTSVLKLATQNLKNVELLAASSLNT 190

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
             IL+  +++L+ +AI  +++ +
Sbjct: 191 LSILKARQIILTSAAINHIKESY 213


>gi|145628331|ref|ZP_01784132.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21]
 gi|145640873|ref|ZP_01796455.1| 50S ribosomal protein L4 [Haemophilus influenzae R3021]
 gi|144980106|gb|EDJ89765.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21]
 gi|145274387|gb|EDK14251.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.4-21]
          Length = 158

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 1/155 (0%)

Query: 52  KGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111
           K R+EV+ +G K + QKGTGRAR        +R GG  F   P      + KK+   A++
Sbjct: 4   KTRAEVSGSGKKPWRQKGTGRARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIK 63

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
             LS+    + ++V++       KTK LV + + L + +A +I    LD N  LAARN+ 
Sbjct: 64  SILSELVRQDRLVVVEKFELDAPKTKVLVQKLKDLAVEDA-LIITASLDENLFLAARNLY 122

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            +++  VQGI+   ++   K++++  A++ +E+  
Sbjct: 123 KVDVRDVQGIDPVSLIAFDKVIVTVDAVKQIEEIL 157


>gi|321310979|ref|YP_004193308.1| 50S ribosomal protein L3 [Mycoplasma haemofelis str. Langford 1]
 gi|319802823|emb|CBY93469.1| ribosomal protein L4 [Mycoplasma haemofelis str. Langford 1]
          Length = 213

 Score =  130 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 4/209 (1%)

Query: 2   IE-LSVRNLDGEDKGVISVSED-IFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           ++ +S+ +  G+ KG   +    I   +     +   +  ++  +R G   +K +SEV+ 
Sbjct: 1   MKPISIFSASGDIKGSFELPASIILPDEIHSHAIFEAVNCENQNRRQGTHDTKNKSEVSG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118
           TG K Y QK TGRAR  S+   QFRGGG AFGP P    V  + +KV  LA   A    F
Sbjct: 61  TGKKPYRQKHTGRARQGSRRNPQFRGGGVAFGPSPMRNYVVGVNRKVSRLAFASAWKGIF 120

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
            S +I ++D   S   KTK       +A   S  L++   +   +  L +RN+ N+    
Sbjct: 121 ESENIALLDESFSSLKKTKEFQEFLGKAKLDSKKLLLLDKESASSVFLVSRNLSNVTCRD 180

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
               +V D++  S L+L+K A++ L +R 
Sbjct: 181 FFHCSVRDLMNQSFLLLTKEAMDLLCERL 209


>gi|313606523|gb|EFR83351.1| ribosomal protein L4/L1 family [Listeria monocytogenes FSL F2-208]
          Length = 131

 Score =  130 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 71/124 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LS+   DG + G I++++ +F ++P + ++  V+  Q    R G  K K RSEV   
Sbjct: 1   MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120

Query: 121 NDIM 124
             ++
Sbjct: 121 EKLV 124


>gi|255321772|ref|ZP_05362927.1| ribosomal protein, L4/L1 family [Campylobacter showae RM3277]
 gi|255301252|gb|EET80514.1| ribosomal protein, L4/L1 family [Campylobacter showae RM3277]
          Length = 204

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E    + +  D    +     L   ++      R   + +K R+ V+  
Sbjct: 1   MSKVCVLNEKFEKASELDLPADY--AQINPHNLYLYVKSYLSGMRSNSAHTKTRAFVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL++K  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPSNERNYFQKVNKKQKRLALEFALNEKAN 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +  I  +D++     KTK       AL+L +A ++    LD N  LA RN+ N  L+   
Sbjct: 119 AGKIFAVDSIEIASGKTKDAAKVISALNLRDA-LVVKDLLDDNTLLAFRNLSNCYLIDAS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            IN Y +     +V+ K+A+E +  
Sbjct: 178 EINAYLVATYGAVVIEKAALETIIK 202


>gi|115387319|ref|XP_001211165.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195249|gb|EAU36949.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 245

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 6/181 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ +L R + ++    R G + +K R++V  +  K+Y QKGTGRAR   K     +GG
Sbjct: 46  PLRKDLLHRAVVYEGDMTRQGTASTKWRADVHGSNRKLYPQKGTGRARVGDKKSPIRKGG 105

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFRA 145
           G AFGP P      LP+K+   A R ALS ++    +++IDN +   E  T +L+     
Sbjct: 106 GVAFGPHPRDFSTELPRKIYDQAWRTALSYRYKRGQLIIIDNEISIPEDATPHLIQDIFK 165

Query: 146 LDLSNAL----IIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++          +   QLD       R +  +  +L    ++V D+L   +L++ K+A++
Sbjct: 166 INCWGREYGRSTLITDQLDEGLFETVRQVGEHAKILDRGDVDVKDLLETGRLIIEKAALD 225

Query: 201 A 201
            
Sbjct: 226 R 226


>gi|33519659|ref|NP_878491.1| 50S ribosomal protein L4 [Candidatus Blochmannia floridanus]
 gi|46577208|sp|Q7VQE7|RL4_BLOFL RecName: Full=50S ribosomal protein L4
 gi|33517322|emb|CAD83707.1| 50S ribosomal subunit protein L4 [Candidatus Blochmannia
           floridanus]
          Length = 212

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/191 (25%), Positives = 95/191 (49%), Gaps = 1/191 (0%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           +SVS+ +F       ++ +++       R G    K RS+V+ +  K + QKGTGRAR  
Sbjct: 21  VSVSDKVFGYPFNPALIHQIVSSYLINCRQGSKSQKSRSDVSGSNKKPWRQKGTGRARSG 80

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
           S     +R GG  F   P      + KK+   A++  LS   C N + +I++L  ++ KT
Sbjct: 81  SVKSPIWRSGGVTFASKPKKYDQKINKKMYKGAMKSILSKLVCDNRLFLIEDLFLEKPKT 140

Query: 137 KYLVTRFRALDLSNALIIDGCQL-DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
             L+ + + +    +++I    + D+N  LA+ N+  + +  +  I+   ++  +  +L 
Sbjct: 141 NLLLKKLKNITSDRSVLIVTDNVIDKNLILASSNLHTVKIYNLNSIDPVSLINFNITLLF 200

Query: 196 KSAIEALEDRF 206
           ++ +E+LE R 
Sbjct: 201 RTIVESLELRL 211


>gi|216408892|gb|ACJ73129.1| ribosomal protein L4 [Campylobacter jejuni]
          Length = 204

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWEGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KS +E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSVLESITK 202


>gi|118411191|ref|YP_874585.1| 50S ribosomal protein L4 [Thalassiosira pseudonana]
 gi|125987630|sp|A0T0X3|RK4_THAPS RecName: Full=50S ribosomal protein L4, chloroplastic
 gi|116739938|gb|ABK20808.1| 50S ribosomal protein L4 [Thalassiosira pseudonana]
          Length = 215

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 10/206 (4%)

Query: 7   RNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
            + +G+    +   I+++  +        ++ R +      ++ G   +K RSEV   G 
Sbjct: 12  FDSNGQQLPGESRKITLN--VLLEDSGNYLIHRDILRHQLSQKQGTVSTKTRSEVRGGGK 69

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     ++GGG  FGP P      L KK R+LAL+  L +K   + 
Sbjct: 70  KPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPKTANLKLNKKERNLALQTLLYNK--RDI 127

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           I  +  L  K  KTK      +    +    L++   +     +L+ RN+ N+ L+    
Sbjct: 128 ITQVSTLDIKNVKTKEFYNFCKEKGFNLNEKLLVIDSEKTTPLKLSTRNLKNVELISASN 187

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           +N   +L+  K++++ SA+  +++ +
Sbjct: 188 LNTLSLLKAKKILVTTSALNDIKEIY 213


>gi|157164387|ref|YP_001467719.1| 50S ribosomal protein L4 [Campylobacter concisus 13826]
 gi|166234649|sp|A7ZG11|RL4_CAMC1 RecName: Full=50S ribosomal protein L4
 gi|157101429|gb|EAT97240.2| ribosomal protein L4/L1 family [Campylobacter concisus 13826]
          Length = 204

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E+ G + +       +     L   ++      R   + +K R+ V+  
Sbjct: 1   MSKIHVLNDKFENSGELELPASY--AEVNPHNLYLYVKSYLAGIRANSAHTKSRAFVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL +AL+ K  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNEKNYFQKVNKKQKRLALEYALAVKAQ 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              I  +D++  +  KTK      + L + +ALI+    LD    LA RN+ N  ++   
Sbjct: 119 DGKIFAVDSISIESGKTKDAANIIKNLKVKDALIVKDL-LDDKTLLAFRNLANCYVVDAN 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   S +++ K+A++ +  
Sbjct: 178 EVNAYLVSTFSSVIIEKAALKTITK 202


>gi|70997242|ref|XP_753373.1| 50S ribosomal protein L4 [Aspergillus fumigatus Af293]
 gi|66851009|gb|EAL91335.1| 50S ribosomal protein L4 [Aspergillus fumigatus Af293]
 gi|159126901|gb|EDP52017.1| 50S ribosomal protein L4 [Aspergillus fumigatus A1163]
          Length = 252

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ IL R + ++    R G + +K R +V  +G K+Y QKGTGRAR   K     RGG
Sbjct: 54  PLRKDILHRAVVYEGDMTRQGTASTKWRDDVHGSGKKLYAQKGTGRARVGDKKSPIRRGG 113

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFRA 145
           G AFGP P     +LP+K+   A R ALS ++    +++IDN +   E  T +L+     
Sbjct: 114 GVAFGPHPRDFATSLPRKIYDQAWRIALSYRYKRGQLIIIDNEISIPEGATPHLIKEIFK 173

Query: 146 LDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++          +   QL+       R +  +  +L  + ++V D+L   +LV+ K A++
Sbjct: 174 VNCWGREFGRSTLITDQLNEGLFETVREVGEHAKILNRKDVDVKDLLETGRLVIEKQALD 233

Query: 201 AL 202
            +
Sbjct: 234 RI 235


>gi|223038484|ref|ZP_03608778.1| ribosomal protein L4/L1 family [Campylobacter rectus RM3267]
 gi|222880341|gb|EEF15428.1| ribosomal protein L4/L1 family [Campylobacter rectus RM3267]
          Length = 204

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E    + +  +    +     L   ++      R   + +K R+ V+  
Sbjct: 1   MSKVCVLNEKFEKASELDLPANY--AQINPHNLYLYVKSYLSGMRSNSAHTKTRAFVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL++K  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPSNERNYFQKVNKKQKRLALEFALNEKAN 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +  I  +D++     KTK       AL+L +A ++    LD N  LA RN+ N  L+   
Sbjct: 119 AGKIFAVDSIEIASGKTKDAAKVISALNLRDA-LVVKDLLDDNTLLAFRNLSNCYLIDAS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            IN Y +     +V+ K+A+E++  
Sbjct: 178 EINAYLVATYGAIVIEKAALESIIK 202


>gi|86149254|ref|ZP_01067485.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|218563292|ref|YP_002345072.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|46577294|sp|Q9PLX2|RL4_CAMJE RecName: Full=50S ribosomal protein L4
 gi|85840036|gb|EAQ57294.1| ribosomal protein L4 [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|112360999|emb|CAL35800.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|216408594|gb|ACJ72980.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408596|gb|ACJ72981.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408598|gb|ACJ72982.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408600|gb|ACJ72983.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408602|gb|ACJ72984.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408604|gb|ACJ72985.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408606|gb|ACJ72986.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408608|gb|ACJ72987.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408610|gb|ACJ72988.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408612|gb|ACJ72989.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408614|gb|ACJ72990.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408616|gb|ACJ72991.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408618|gb|ACJ72992.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408620|gb|ACJ72993.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408622|gb|ACJ72994.1| ribosomal protein L4 [Campylobacter coli]
 gi|216408624|gb|ACJ72995.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408626|gb|ACJ72996.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408628|gb|ACJ72997.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408630|gb|ACJ72998.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408632|gb|ACJ72999.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408634|gb|ACJ73000.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408636|gb|ACJ73001.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408638|gb|ACJ73002.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408640|gb|ACJ73003.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408642|gb|ACJ73004.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408644|gb|ACJ73005.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408646|gb|ACJ73006.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408648|gb|ACJ73007.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408650|gb|ACJ73008.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|216408652|gb|ACJ73009.1| ribosomal protein L4 [Campylobacter jejuni]
 gi|284926897|gb|ADC29249.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315926633|gb|EFV06013.1| ribosomal protein L4/L1 family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 204

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N  ++ V 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVT 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   + +++ KS +E++  
Sbjct: 178 EVNAYLVSVFNAVIMEKSVLESITK 202


>gi|146181037|ref|XP_001022027.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila]
 gi|146144303|gb|EAS01782.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila
           SB210]
          Length = 358

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 1/194 (0%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
             + +  DIF +  ++ I+   + W+  R  I    +K +  V+ +G K Y QKGTG+AR
Sbjct: 89  KTVDLDHDIFNVPLRRDIVHSYVLWRQNRDEIKTHITKTKGTVSGSGKKPYAQKGTGKAR 148

Query: 75  HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC 134
             +K     + GGKA G  P I  + L KK+R  AL+  LS K     + +I+     E 
Sbjct: 149 MGNKRAPGRKKGGKAHGAKPRILRYPLNKKIRLQALKVVLSAKLAEGKLRIIETEQVDEP 208

Query: 135 KTKYLVTRFRALDLSNALIIDGC-QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193
           KT+ +      +D  + ++I    Q+D NF+LA +NI  +       ++V  +L   ++ 
Sbjct: 209 KTRAIAKMLEKMDKRSRILIVHPYQIDTNFELAHQNIQKLQSCYPNELSVLKVLTNDRVF 268

Query: 194 LSKSAIEALEDRFK 207
           ++  A+  L    +
Sbjct: 269 ITLEALRQLTQELQ 282


>gi|315283851|ref|ZP_07871907.1| ribosomal protein L4/L1 family [Listeria marthii FSL S4-120]
 gi|313612505|gb|EFR86591.1| ribosomal protein L4/L1 family [Listeria marthii FSL S4-120]
          Length = 126

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/121 (41%), Positives = 69/121 (57%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LS+   DG + G I++++ +F ++P + ++  V+  Q    R G  K K RSEV   
Sbjct: 1   MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKVR LA++  LS K   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNE 120

Query: 121 N 121
            
Sbjct: 121 E 121


>gi|157737004|ref|YP_001489687.1| 50S ribosomal protein L4 [Arcobacter butzleri RM4018]
 gi|315636196|ref|ZP_07891450.1| 50S ribosomal protein L4 [Arcobacter butzleri JV22]
 gi|226730613|sp|A8ESU4|RL4_ARCB4 RecName: Full=50S ribosomal protein L4
 gi|157698858|gb|ABV67018.1| 50S ribosomal protein L4 [Arcobacter butzleri RM4018]
 gi|315479557|gb|EFU70236.1| 50S ribosomal protein L4 [Arcobacter butzleri JV22]
          Length = 203

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 3/204 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V N   E+ G + +       +     L   ++      R   +++K R+EV+  
Sbjct: 1   MSKAIVLNEKFENNGEVVLPASY--EEINSHNLYLYVKSYLASLRANTARAKTRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K   QKG+G AR  SK    F GGG+AFGP        + KK ++LAL++AL+ +  +
Sbjct: 59  GKKPKAQKGSGAARWGSKRSPLFVGGGQAFGPTKRNYNQKVNKKQKALALKYALNAQANN 118

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+D+L  +  KTK  V     ++  +  +I    +D    LA RNI N  ++  Q 
Sbjct: 119 GSLFVVDSLKIESGKTKEAVAVLSKINKRD-TLIVCDVIDEKTYLAFRNIKNCYMVEKQE 177

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           +N Y I     +++ KS ++AL  
Sbjct: 178 VNAYLIAVYHSVLIEKSVLDALTK 201


>gi|159478579|ref|XP_001697380.1| plastid ribosomal protein L4 [Chlamydomonas reinhardtii]
 gi|28911891|gb|AAO53242.1| ribosomal protein L4 [Chlamydomonas reinhardtii]
 gi|158274538|gb|EDP00320.1| plastid ribosomal protein L4 [Chlamydomonas reinhardtii]
          Length = 243

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
             +  +  DG  KG   ++  + A    +G++ R L       R G + +  RSEV   G
Sbjct: 29  ASIPYKAADGSSKGTQQLALKV-AEDSAKGLVHRYLVMVQQNARQGTASTLTRSEVRGGG 87

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K Y QKGTG AR  S     F GGG  FGP P     ++ KK R LAL  AL       
Sbjct: 88  KKPYAQKGTGNARRGSSVSPLFPGGGVTFGPKPKDWSISMNKKERRLALATALQSATADM 147

Query: 122 DIMVIDNLVSKECKTKYLV---TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            ++       ++ KTK +V    +  A  +   +++   +   +  LA RNI  + +   
Sbjct: 148 IVVESLAGKLQDTKTKSMVALLEKLGANAMERKVLLITKEERPDVTLAGRNIAKLTMNTA 207

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             I+V+D+L    +++   A+  ++  +
Sbjct: 208 SAISVFDVLNADHIIIEDEALAHVQSFY 235


>gi|145249828|ref|XP_001401253.1| 50S ribosomal protein L4 [Aspergillus niger CBS 513.88]
 gi|134081937|emb|CAK97203.1| unnamed protein product [Aspergillus niger]
          Length = 289

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ IL R + ++    R G + +K R +V  +G K++ QKGTGRAR   K     RGG
Sbjct: 91  PLRKDILHRAVVYEGDMTRQGTASTKWRDDVHGSGRKLHAQKGTGRARVGDKKSPIRRGG 150

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV-SKECKTKYLVTRFRA 145
           G AFGP P      LP+K+   A R ALS ++    ++++DN +   E  T ++V     
Sbjct: 151 GVAFGPHPRDFSTELPQKIYDQAWRIALSYRYKRGQLIIVDNEIALPEGATPHIVEEIFK 210

Query: 146 LDLS----NALIIDGCQLDRNFQLAARN-IPNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++          +   Q +       R    +  +L  + ++V D+L   +L++ K A++
Sbjct: 211 VNCWGRHYGRSTLITDQPNEELFETVRQAGEHAKILDRRDVDVKDLLETGRLIIEKQALD 270

Query: 201 AL 202
            +
Sbjct: 271 RI 272


>gi|299830599|ref|YP_003735047.1| 50S ribosomal protein L4 [Durinskia baltica]
 gi|297384963|gb|ADI40262.1| 50S ribosomal protein L4 [Durinskia baltica]
          Length = 215

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 7   RNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
            +  G+       +   +        +L + L      +R G   +K RSEV   G K +
Sbjct: 12  LDFTGKALDSTAELQLSVLEKSGN-YLLHKDLLRHYNSQRQGTVSTKTRSEVRGGGRKPW 70

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRAR  S     ++GGG  FGP P      + KK R LAL+  L +K  +  ++ 
Sbjct: 71  RQKGTGRARAGSNRSPLWKGGGVIFGPKPKTVSIKVNKKERRLALQTLLYNKKNNILVIE 130

Query: 126 IDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPNINLLPVQGINV 183
                  + KTK  +   +   ++    ++I   +     +LA +N+  + L+    +N 
Sbjct: 131 NLENGLTDSKTKSFLDICKNCSVNLDQKVLIVVAEKTVPLKLATQNLKTVELILASNLNT 190

Query: 184 YDILRCSKLVLSKSAIEALEDRF 206
           + +L   +++L+  A+  +++ +
Sbjct: 191 FSLLNAKQILLTPLALTTIKEIY 213


>gi|193216760|ref|YP_002000002.1| 50S ribosomal protein L4 [Mycoplasma arthritidis 158L3-1]
 gi|193002083|gb|ACF07298.1| ribosomal protein L4 [Mycoplasma arthritidis 158L3-1]
          Length = 260

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 5/206 (2%)

Query: 2   IELSVRNLDGEDKGVIS--VSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVA 58
           +   V+ ++ +        + + +F L+ P    +   +  +   KR+   K+K R+EV+
Sbjct: 52  MTPKVQKVEPKATVKFDSTLPKSVFGLEKPYNQAVFDTILSERGAKRLATHKTKTRAEVS 111

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDK 117
            TG K + QKGTG AR  S     F GGG+ FGP P       + KKVR  AL  ALS  
Sbjct: 112 GTGKKPWAQKGTGNARAGSMRSPIFVGGGRVFGPTPERNYHLKVNKKVRKNALFTALSAL 171

Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
             S  ++V D +   +  T+ ++       L+    +     D N  L+ARN+PN+ +  
Sbjct: 172 AASQAVLVKDIM-MTKPSTRDMLVELTKEKLNALNYVLIVSNDENVYLSARNLPNVEVTR 230

Query: 178 VQGINVYDILRCSKLVLSKSAIEALE 203
           V  ++V  ++R   LV+SK +IE LE
Sbjct: 231 VTSLSVESLVRADALVISKESIEWLE 256


>gi|240047260|ref|YP_002960648.1| 50S ribosomal protein L4 [Mycoplasma conjunctivae HRC/581]
 gi|239984832|emb|CAT04822.1| 50S ribosomal protein L4 [Mycoplasma conjunctivae]
          Length = 220

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 3/194 (1%)

Query: 16  VISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
              ++++IF L+ P    +   + ++   +R    K K R+EV+ TG K + QKGTG+AR
Sbjct: 28  STPLNQEIFGLEVPHSQAIFDTILYERASRRRATHKVKSRAEVSGTGKKPWKQKGTGKAR 87

Query: 75  HSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133
             S+    F GGG+AFGP         + KKVR LA   ALS       I+V D     +
Sbjct: 88  AGSRRSPIFVGGGRAFGPTNNKNYAIKVNKKVRRLAFVSALSQLAHEKQILVDD-FAMDK 146

Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193
             TK LV +  +  L+ A  +     D N  ++ARN+ N+ +     + V  ++    L+
Sbjct: 147 ISTKELVKKLASYQLAKARFVLIASSDENLFISARNLQNVVVTKPSSLLVEQLIGADVLI 206

Query: 194 LSKSAIEALEDRFK 207
           +S+  I  +E RFK
Sbjct: 207 ISQKEINEIEGRFK 220


>gi|238499961|ref|XP_002381215.1| 50S ribosomal protein L4 [Aspergillus flavus NRRL3357]
 gi|317150572|ref|XP_001824126.2| 50S ribosomal protein L4 [Aspergillus oryzae RIB40]
 gi|220692968|gb|EED49314.1| 50S ribosomal protein L4 [Aspergillus flavus NRRL3357]
          Length = 289

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ IL R + ++    R G + +K R +V  +G K++ QKGTG+AR   K     +GG
Sbjct: 91  PLRKDILHRAVIYEGDMTRQGSANTKWRDDVHGSGRKLHAQKGTGKARVGDKKSPIRKGG 150

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKECKTKYLVTRFRA 145
           G A GP P     +LP+K+   A R ALS ++    +++IDN     E  T YL+     
Sbjct: 151 GVAHGPHPRDFSTSLPQKIYDQAWRIALSYRYRRGQLIIIDNDISIPEDATPYLIKEIFK 210

Query: 146 LDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++          +   Q +       R +  +  +L  + ++V D+L   +L++ K A++
Sbjct: 211 VNNWGREFGRSTLITDQPNEGLFATVREVGEHAKILDRKDVDVKDLLETGRLIIEKQALD 270

Query: 201 AL 202
            +
Sbjct: 271 RI 272


>gi|293977932|ref|YP_003543362.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri DMIN]
 gi|292667863|gb|ADE35498.1| Ribosomal protein L4 [Candidatus Sulcia muelleri DMIN]
          Length = 205

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 97/202 (48%), Gaps = 1/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++++ N  G + G      + F  K    IL   ++     +R G +KSK RSE+  + 
Sbjct: 1   MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+  QKG+G AR        FR GG+ FGP P      +  K + LA +  L+ K  +N
Sbjct: 61  KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIKINNKSKFLAKKTILNFKLRTN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
            I VI++      KTK +      L+ +    +I   +++ NF  ++RN+   N L +  
Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNIKKSLIIYNKINDNFFFSSRNLKFTNFLSINE 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N Y++     LV  +SAI+ +
Sbjct: 181 LNSYELANSDYLVFFESAIKKI 202


>gi|156097819|ref|XP_001614942.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803816|gb|EDL45215.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 535

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 12/216 (5%)

Query: 3   ELSVRNL----DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSE 56
           E+ V       D E+   +SV  DIF L  +  IL +   +       G ++     + E
Sbjct: 124 EIPVYKFECSPDDENIKYVSVPNDIFGLPIRPDILHKCYYFYRT-ALAGYTERMQLYKWE 182

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
              +  K   QK +G+AR + +       G K     P      + +K+    ++  LS 
Sbjct: 183 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPLRPFDQRTKINRKLLWRGMKIILSA 242

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFR-----ALDLSNALIIDGCQLDRNFQLAARNIP 171
           KF  + I V+DN + K  KTKY V   R       + +  +      ++ NF  A  NI 
Sbjct: 243 KFAQDQIKVVDNFLIKSHKTKYAVKYLRNILGNNCNSALLVHEGKTDVNDNFFWACANIA 302

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           ++    VQG+N+Y++L+   +V +  A++ L    K
Sbjct: 303 SVKRENVQGVNIYNLLKYRFVVFTYKALQNLTYELK 338


>gi|152989973|ref|YP_001355695.1| 50S ribosomal protein L4 [Nitratiruptor sp. SB155-2]
 gi|166234694|sp|A6Q1H9|RL4_NITSB RecName: Full=50S ribosomal protein L4
 gi|151421834|dbj|BAF69338.1| 50S ribosomal protein L4 [Nitratiruptor sp. SB155-2]
          Length = 204

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V N + E    +++ E           L    +  +   R   + +K R EV+  
Sbjct: 1   MSKAVVLNENFEKASEVALPEHFQG--INPHNLYLYAKAYAANLRANNAHTKSRGEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S     F GGG AFGP         + KK +  AL  AL++K  
Sbjct: 59  GRKPWQQKGRGGARAGSIRSPLFVGGGVAFGPKNTKNYTQKVNKKQKRKALEFALNEKGE 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + ++D++  +  KTK        +   +  ++    +D    LA RN+PN  L+   
Sbjct: 119 QGALFIVDSIAVESGKTKDAAAIVNKIGARDV-LVVKENIDEKTFLAFRNLPNAYLIEPN 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y       +V+ +   E +  
Sbjct: 178 ELNAYLAAAFRAVVIERPVWEKIVK 202


>gi|83584315|gb|ABC24932.1| plastid 50S ribosomal protein L4 family [Prototheca wickerhamii]
          Length = 228

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 71/138 (51%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + + N  G   G  ++  D+F    +  IL RV+RWQ   ++ G  K+K R+EV   G K
Sbjct: 71  VPLLNHRGRSVGSFTLGGDVFNTVVRPDILHRVVRWQLAARQQGTHKTKTRTEVRGGGRK 130

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
              QKG G +R  S    Q+RGGG A GPVP      L K +R L LR ALS K     +
Sbjct: 131 PRPQKGGGVSRQGSIRAPQWRGGGVAHGPVPRSHAIKLLKSIRRLGLRSALSAKAREGRL 190

Query: 124 MVIDNLVSKECKTKYLVT 141
           +++D L   E KT+ L  
Sbjct: 191 VIVDTLRLPEAKTRALAD 208


>gi|161833820|ref|YP_001598016.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri GWSS]
 gi|152206310|gb|ABS30620.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri GWSS]
          Length = 207

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 3/204 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++++ N  G + G      + F  K    IL   ++     +R G +KSK RSE+  + 
Sbjct: 1   MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+  QKG+G AR        FR GG+ FGP P      +  K + LA +  L+ K  +N
Sbjct: 61  KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIKINNKSKFLAKKTILNFKLRTN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLPV 178
            I VI++      KTK +      L+ +      +I   +++  F  ++RN+   N L +
Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNFNIKKSLIIYNKINDIFFFSSRNLKFTNFLSI 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N Y++     LV  +SAI+ +
Sbjct: 181 NELNSYELANSDYLVFFESAIKKI 204


>gi|302853159|ref|XP_002958096.1| mitochondrial ribosomal protein L4 [Volvox carteri f. nagariensis]
 gi|300256564|gb|EFJ40827.1| mitochondrial ribosomal protein L4 [Volvox carteri f. nagariensis]
          Length = 357

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 32/236 (13%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           E  V ++D +  G++ +    F +  +  IL RV+R+   + + G  K+K R EV+  G 
Sbjct: 85  EAVVYSMDEQPLGLVRLPGVAFNVPVRLDILHRVVRYLRAKWQQGTHKAKRRGEVSGGGR 144

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K   QK TGRAR  S     ++GGG +  P+P    H LP+ VR L +R A++ K     
Sbjct: 145 KPRPQKKTGRARQGSIRSPLWKGGGVSHAPLPRSHAHKLPRSVRLLGMRCAITAKIHEGR 204

Query: 123 IMVIDNL------------------------VSKECKTKYLVTRFRALD----LSNALII 154
             V+DN                           +      L  R   +      S  L++
Sbjct: 205 FFVVDNFLRVPGPSGSSSAGSASNSVNALGEQVRVRDYSELKQRLARVTAGSFGSTWLLV 264

Query: 155 DGCQLDRNFQLAARNIPN----INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           D  +  R+  +  R        + +L  + + VY +L+  +LV++++A+E+L ++ 
Sbjct: 265 DSGEAGRDGGVQLRKWLKGRMVMEVLAPEQLTVYHVLKYHRLVVTRAALESLAEQL 320


>gi|299830378|ref|YP_003734593.1| ribosomal protein L4 [Kryptoperidinium foliaceum]
 gi|297385080|gb|ADI40378.1| ribosomal protein L4 [Kryptoperidinium foliaceum]
          Length = 215

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 2   IELSVR------NLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGR 54
           + +         +L G+       +  ++        +L + L      +R G   +K R
Sbjct: 1   MTVQKFIKYTPVDLTGKPLDSSQELKVNVLEKSGN-YLLHKDLLRHYNSQRQGTLSTKTR 59

Query: 55  SEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL 114
           SEV   G K + QKGTGRAR  S +   ++GGG  FGP P      L KK R LAL+  L
Sbjct: 60  SEVRGGGRKPWRQKGTGRARAGSNTSPLWKGGGVIFGPKPKTISIKLNKKERRLALQTLL 119

Query: 115 SDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS--NALIIDGCQLDRNFQLAARNIPN 172
            +K  S  ++        + KTK  +   +   ++    +++   +     +LA  NI +
Sbjct: 120 YNKKNSILVVENLENAITDSKTKSFLKICQDCSINLDQPVLVVVNEKTLPLKLATNNIKS 179

Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           I L+    +N + +L   +++++  A+  +++ +
Sbjct: 180 IELILASQLNTFSLLNAKQILVTPLALNTIQEVY 213


>gi|83772865|dbj|BAE62993.1| unnamed protein product [Aspergillus oryzae]
          Length = 250

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 6/182 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ IL R + ++    R G + +K R +V  +G K++ QKGTG+AR   K     +GG
Sbjct: 52  PLRKDILHRAVIYEGDMTRQGSANTKWRDDVHGSGRKLHAQKGTGKARVGDKKSPIRKGG 111

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL-VSKECKTKYLVTRFRA 145
           G A GP P     +LP+K+   A R ALS ++    +++IDN     E  T YL+     
Sbjct: 112 GVAHGPHPRDFSTSLPQKIYDQAWRIALSYRYRRGQLIIIDNDISIPEDATPYLIKEIFK 171

Query: 146 LDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++          +   Q +       R +  +  +L  + ++V D+L   +L++ K A++
Sbjct: 172 VNNWGREFGRSTLITDQPNEGLFATVREVGEHAKILDRKDVDVKDLLETGRLIIEKQALD 231

Query: 201 AL 202
            +
Sbjct: 232 RI 233


>gi|118474924|ref|YP_891245.1| 50S ribosomal protein L4 [Campylobacter fetus subsp. fetus 82-40]
 gi|226730634|sp|A0RM12|RL4_CAMFF RecName: Full=50S ribosomal protein L4
 gi|118414150|gb|ABK82570.1| ribosomal protein L4/L1 family [Campylobacter fetus subsp. fetus
           82-40]
          Length = 204

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +++V N   E    I +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKIAVLNEKFEKTSEIELPASY--AEVNSHNLYLYVKSYLAGIRANSAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPKNNRNYDQKVNKKQKRLALEFALNDKVA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +     +D++     KTK   +    L + +ALII   +LD    LA RN+ N  ++   
Sbjct: 119 NGKFFAVDSIEISSGKTKDAASIINKLGVRDALIIK-NELDAKTLLAFRNLANCYVIDAS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   S ++  K+A++++  
Sbjct: 178 EVNAYLVSVYSAVIAEKAALQSIVK 202


>gi|221508042|gb|EEE33629.1| 50S ribosomal protein L4, putative [Toxoplasma gondii VEG]
          Length = 625

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 8/195 (4%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGR 72
           G + +  DIF L  +  IL R   W   R   G ++     + E   +  K+  Q+ +GR
Sbjct: 211 GCVVLPNDIFGLPLRPDILYRC-YWFYRRAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           AR   +       G KA    P      + K++    L+  LS KF    I V+D+   +
Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329

Query: 133 ECKTKYLVTRFRA-----LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
             KTK+ V   R         +  +      ++ NF+ A  +I  +    V+GINVY++L
Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389

Query: 188 RCSKLVLSKSAIEAL 202
           +  +LV+++ A+  L
Sbjct: 390 KYRQLVITEKALLKL 404


>gi|221486254|gb|EEE24515.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 625

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 8/195 (4%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGR 72
           G + +  DIF L  +  IL R   W   R   G ++     + E   +  K+  Q+ +GR
Sbjct: 211 GCVVLPNDIFGLPLRPDILYRC-YWFYRRAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           AR   +       G KA    P      + K++    L+  LS KF    I V+D+   +
Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329

Query: 133 ECKTKYLVTRFRA-----LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
             KTK+ V   R         +  +      ++ NF+ A  +I  +    V+GINVY++L
Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389

Query: 188 RCSKLVLSKSAIEAL 202
           +  +LV+++ A+  L
Sbjct: 390 KYRQLVITEKALLKL 404


>gi|237833509|ref|XP_002366052.1| 50S ribosomal protein L4,  putative [Toxoplasma gondii ME49]
 gi|211963716|gb|EEA98911.1| 50S ribosomal protein L4, putative [Toxoplasma gondii ME49]
          Length = 625

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 8/195 (4%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGR 72
           G + +  DIF L  +  IL R   W   R   G ++     + E   +  K+  Q+ +GR
Sbjct: 211 GCVVLPNDIFGLPLRPDILYRC-YWFYRRAIAGWTERMQLFKWEWPGSKRKLRTQQRSGR 269

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           AR   +       G KA    P      + K++    L+  LS KF    I V+D+   +
Sbjct: 270 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQITVVDHFNLQ 329

Query: 133 ECKTKYLVTRFRA-----LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
             KTK+ V   R         +  +      ++ NF+ A  +I  +    V+GINVY++L
Sbjct: 330 SHKTKHCVRHLRRLLGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGINVYNLL 389

Query: 188 RCSKLVLSKSAIEAL 202
           +  +LV+++ A+  L
Sbjct: 390 KYRQLVITEKALLKL 404


>gi|259480440|tpe|CBF71574.1| TPA: 50S ribosomal protein L4 (AFU_orthologue; AFUA_5G12800)
           [Aspergillus nidulans FGSC A4]
          Length = 287

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 6/182 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ IL R + ++    R G + +K R +V  +  K+Y QKGTGRAR   K     RGG
Sbjct: 89  PLRKDILHRAVVYEGDMTRQGTASTKWRGDVHGSNRKLYAQKGTGRARVGDKKSPIRRGG 148

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV-SKECKTKYLVTRFRA 145
           G AFGP P      LP+K+   A R ALS ++    +++IDN +   E  T Y +     
Sbjct: 149 GVAFGPHPRDFSTELPRKIYDQAWRIALSYRYRRGQLIIIDNEIGIPEDATPYFIKEIFK 208

Query: 146 LDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
            +          +   ++        R++  +  +L    ++V D+L   +L++ K A++
Sbjct: 209 FNRWGREFGRSTLITDRVHEELFETVRSVGEDAKILDRGDVDVKDLLETGRLIVEKRALD 268

Query: 201 AL 202
            +
Sbjct: 269 RI 270


>gi|225711982|gb|ACO11837.1| Mitochondrial 39S ribosomal protein L4 [Lepeophtheirus salmonis]
 gi|290562960|gb|ADD38874.1| 39S ribosomal protein L4, mitochondrial [Lepeophtheirus salmonis]
          Length = 275

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 4/194 (2%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +  D++ + P+  I+A  L+WQ   K++  +  K R E+   G++ + QKGTGRARH 
Sbjct: 59  VDLHPDVWGVAPRLDIIADNLKWQENYKKVEYNYVKDRYELPGKGARPWPQKGTGRARHK 118

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDK-FCSNDIMVIDNLVSKEC 134
           SK    +  GGKA GP  P      LP + R   L H LS K    + I+V +    +  
Sbjct: 119 SKRSPIWLQGGKAHGPKGPKTNFFMLPYQHRVNGLIHTLSVKFAQDDIIIVQNFDDLEST 178

Query: 135 KTKYLVTRFRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
             + L           + +          N   A+ +I ++N++P  G+NV+ +L+   L
Sbjct: 179 DPEDLEDLISERGWGLSTLFVNGDSIAPENITAASESILHVNVMPSFGLNVHSMLKHKTL 238

Query: 193 VLSKSAIEALEDRF 206
           VL+  A+  +ED+ 
Sbjct: 239 VLTLDAVNLIEDKL 252


>gi|301633449|gb|ADK87003.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae FH]
          Length = 212

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 1   MIELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M +L +  +DG  +   + +S  + A + +Q  +   +  +    R G      + EV  
Sbjct: 1   MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118
            G K Y QK TG+AR  S     F GGG  FGP P       L KK  + AL    S+K 
Sbjct: 61  GGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKL 120

Query: 119 CSNDIMVIDN--LVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINL 175
            S++  ++D       E KTK +V   ++  L +   +     L+ N + +  NI N+ +
Sbjct: 121 ASDNTHLVDQNLFNKTEGKTKVMVQFLKSAKLLDKNVLFVVNTLNTNLEQSTSNIKNVQV 180

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
             +  ++V D++  + L++ K  ++ALE +FK
Sbjct: 181 KHLDKVSVRDLMLANALLVEKEVLKALEGKFK 212


>gi|121713920|ref|XP_001274571.1| 50S ribosomal protein L4 [Aspergillus clavatus NRRL 1]
 gi|119402724|gb|EAW13145.1| 50S ribosomal protein L4 [Aspergillus clavatus NRRL 1]
          Length = 292

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 6/182 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ IL R + ++    R G + +K R++V  +  K+Y QKGTGRAR   K     RGG
Sbjct: 94  PLRKDILHRAVVYEGDMTRQGTASTKWRADVHGSNKKLYAQKGTGRARAGDKKSPIRRGG 153

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFRA 145
           G AFGP P     +LP+K+   A R ALS ++    +++IDN +   E  T +L+     
Sbjct: 154 GVAFGPHPRDFATSLPQKIYDQAWRIALSYRYKRGQLIIIDNEISIPEDATPHLIQEIFK 213

Query: 146 LDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           ++          +   QL        R +  +  +L  Q ++V D+L   +LV+ K A++
Sbjct: 214 VNGWGREFGRSTLITDQLKEGLFDTVRGVGEHAKILNRQDVDVKDLLETGRLVIEKQALD 273

Query: 201 AL 202
            +
Sbjct: 274 RI 275


>gi|13507905|ref|NP_109854.1| 50S ribosomal protein L4 [Mycoplasma pneumoniae M129]
 gi|2500234|sp|P75579|RL4_MYCPN RecName: Full=50S ribosomal protein L4
 gi|1674370|gb|AAB96313.1| ribosomal protein L4 [Mycoplasma pneumoniae M129]
          Length = 212

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 5/212 (2%)

Query: 1   MIELSVRNLDGE-DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           M +L +  +DG  +   + +S  + A + +Q  +   +  +    R G      + EV  
Sbjct: 1   MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRG 60

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118
            G K Y QK TG+AR  S     F GGG  FGP P       L KK  + AL    S+K 
Sbjct: 61  GGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKL 120

Query: 119 CSNDIMVIDN--LVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINL 175
            S++  ++D       E KTK ++   ++  L +   +     L+ N + +  NI N+ +
Sbjct: 121 ASDNTHLVDQNLFNKTEGKTKVMMQFLKSAKLLDKNVLFVVNTLNTNLEQSTSNIKNVQV 180

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
             +  ++V D++  + L++ K  ++ALE +FK
Sbjct: 181 KHLDKVSVRDLMLANALLVEKEVLKALEGKFK 212


>gi|261189683|ref|XP_002621252.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081]
 gi|239591488|gb|EEQ74069.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081]
 gi|239612983|gb|EEQ89970.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis ER-3]
 gi|327352159|gb|EGE81016.1| 50S ribosomal protein L4 [Ajellomyces dermatitidis ATCC 18188]
          Length = 263

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R ++  +G K+  QKGTGRAR   K     RG
Sbjct: 66  LPLRRDILHRAVVYEGDKTRQGTASTKWRDDIRGSGRKIRPQKGTGRARLGDKKSPMLRG 125

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL------VSKECKTKYL 139
           GG A GP P      LPKKV  LA R ALS ++    ++++++       VS    T   
Sbjct: 126 GGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPREVSPYWLTDVF 185

Query: 140 VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199
                      +L+I   + +R F+  A+   +  +L  + ++V D+L   +L++ K+A+
Sbjct: 186 EKNQWGKGFGRSLMITEVKKERLFRAVAQIGQHARVLDREDVDVKDLLETGRLIVEKTAL 245

Query: 200 EA 201
           + 
Sbjct: 246 DR 247


>gi|303314421|ref|XP_003067219.1| 54S ribosomal protein YmL6, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106887|gb|EER25074.1| 54S ribosomal protein YmL6, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320037504|gb|EFW19441.1| 50S ribosomal protein L4 [Coccidioides posadasii str. Silveira]
          Length = 298

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++    R G + +K RSEV  +  K+  QKGTGRAR   K     RG
Sbjct: 101 LPLRRDILHRAVVYEGDMARQGTANTKWRSEVRGSRKKIRPQKGTGRARLGDKKSPMLRG 160

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND-IMVIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LP+K+   A R ALS ++     I+V DN+   +  T + +    
Sbjct: 161 GGVAHGPHPRDFSTELPRKIYDKAWRTALSYRYRRGQLIIVNDNISMPKDTTVHFLKEIF 220

Query: 145 ALDLSNAL----IIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
                       ++           +   I     +L  + ++V D+L   +L++ K A+
Sbjct: 221 DTHNWGKKFGRSLLITEVKKEKLFRSIAEISEEARVLDREDVDVKDLLETGRLIIEKMAL 280

Query: 200 EA 201
           + 
Sbjct: 281 DR 282


>gi|269101056|ref|YP_003289204.1| 50S ribosomal protein L4 [Ectocarpus siliculosus]
 gi|266631564|emb|CAV31235.1| Chloroplast 50S ribosomal protein L4 [Ectocarpus siliculosus]
 gi|270118694|emb|CAT18764.1| Chloroplast 50S ribosomal protein L4 [Ectocarpus siliculosus]
          Length = 232

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 4/198 (2%)

Query: 12  EDKGVISVSEDIF-ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70
           E    +S++  I    +    IL R    Q   +R G   +  R+EV   G K + QKGT
Sbjct: 34  EKNETVSLTLQIKEGQETDNYILYRAYIAQRTNERQGTVNTLTRAEVKGGGRKPWRQKGT 93

Query: 71  GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           GRAR  S     ++GGG +FGP P   ++ L +K   LA+R  +  K  S  I+  +   
Sbjct: 94  GRARAGSNRSPLWKGGGVSFGPKPKTYINKLNRKEWQLAVRGLIILKEPSITIIDHNFSS 153

Query: 131 SKECKTKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
               KT   +  F+  D+S +  I      ++ N     RNI  + ++    +N+  +L 
Sbjct: 154 ID-NKTNIFINLFKGCDISFSKNITFIVPAIEENLFKVTRNIKTVTIMRADTLNLITLLE 212

Query: 189 CSKLVLSKSAIEALEDRF 206
              L +SK +++ +E+ +
Sbjct: 213 SDHLFISKDSLKIIEEIY 230


>gi|94502244|ref|ZP_01308730.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451215|gb|EAT14154.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 207

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 3/204 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +++++ N  G + G      + F  K    IL   ++     +R G +KSK RSE+  + 
Sbjct: 1   MKITIFNNSGLETGRYLKVNNFFLKKENNNILFLDIKRYLSAQRQGTNKSKERSEITGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+  QKG+G AR        FR GG+ FGP P      +  K + LA +  L+ K  +N
Sbjct: 61  KKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNFNIIINNKSKFLAKKTILNFKLRTN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLS---NALIIDGCQLDRNFQLAARNIPNINLLPV 178
            I VI++      KTK +      L+ +      +I   +++  F  ++RN+   N L +
Sbjct: 121 KIKVIEDFKFNIIKTKLVFKILNRLNFNFNIKKSLIIYNKINDIFFFSSRNLKFTNFLSI 180

Query: 179 QGINVYDILRCSKLVLSKSAIEAL 202
             +N Y++     LV  +SAI+ +
Sbjct: 181 NELNSYELANSDYLVFFESAIKKI 204


>gi|324510849|gb|ADY44533.1| 39S ribosomal protein L4 [Ascaris suum]
          Length = 298

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/204 (29%), Positives = 100/204 (49%), Gaps = 4/204 (1%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
            S+ +++ +  G+I +  ++F   P+  IL R + WQ   + +  +K   + E+   G K
Sbjct: 67  CSLNSVEEKRSGIIDLHPEVFRCTPRIDILHRNVTWQLVYRNVQFTKQLSKGEMPGGGRK 126

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSND 122
            + QK TGRA   S    QF  GG A G   P    + LP  +R   L  AL+ K   ND
Sbjct: 127 PWPQKKTGRAHAGSIRSPQFYAGGFANGVRGPRTWFYMLPDAIRLQGLCVALTIKHAQND 186

Query: 123 IMVIDNLVS---KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           ++V+D+  S    E +  + +   R    S   + +  ++  N   A   IP+ N++PV 
Sbjct: 187 LVVVDDFGSLPNAEPQYLHDLADARNWGYSVLFVTESSEVPSNLADACDGIPSFNIMPVY 246

Query: 180 GINVYDILRCSKLVLSKSAIEALE 203
           G+N Y I++   +VL + A+E LE
Sbjct: 247 GLNCYSIMKYETIVLCRLALEILE 270


>gi|255635335|gb|ACU18021.1| unknown [Glycine max]
          Length = 224

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/121 (41%), Positives = 69/121 (57%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSK 63
           + V N   EDKG + +  D+F L  ++ I+ RV+RWQ  +++ G   +K  SEV+ TG K
Sbjct: 102 IPVTNFHNEDKGYMVLPGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRK 161

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            + QKGTGRARH S    QFRGG    GP P      + KKVR L L+ ALS +     +
Sbjct: 162 PWNQKGTGRARHGSLRGPQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKL 221

Query: 124 M 124
           +
Sbjct: 222 L 222


>gi|189218696|ref|YP_001939337.1| Ribosomal protein L4 [Methylacidiphilum infernorum V4]
 gi|226730687|sp|B3E0I5|RL4_METI4 RecName: Full=50S ribosomal protein L4
 gi|189185554|gb|ACD82739.1| Ribosomal protein L4 [Methylacidiphilum infernorum V4]
          Length = 222

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 90/179 (50%)

Query: 29  QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGK 88
           +  +L   L       R G   +K ++ V  +G K + QKGTGRAR    S   + GGG 
Sbjct: 29  RDQVLHDALVGYLANSRSGTRATKTKATVKASGKKPWRQKGTGRARAGYVSSPVWVGGGV 88

Query: 89  AFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148
            FGP P      +PKK++ LAL  A + K  S ++  ++ +   E KTK +++     D 
Sbjct: 89  VFGPQPRDFSKNIPKKIKGLALLKAFAAKVRSEEVYCLEKVEMTEIKTKKMLSLLEGWDG 148

Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
             + ++      RN  L+ RNIP++ ++  Q +N  D+L   K+ L + AIE L +R K
Sbjct: 149 KESGLLILKNPSRNVLLSGRNIPHLGIVRAQDVNALDLLGFKKVFLERPAIEVLVERVK 207


>gi|291277267|ref|YP_003517039.1| 50S ribosomal protein L4 [Helicobacter mustelae 12198]
 gi|290964461|emb|CBG40311.1| 50S ribosomal protein L4 [Helicobacter mustelae 12198]
          Length = 205

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 4/203 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   +    I + +     + ++  L   ++      R   +K+K R EV+  
Sbjct: 1   MSKAIVLDKQLKKNSEIDLPQSY--SEIKEHNLYLYVKSYLASLRNNSAKAKNRGEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + GP         + KK + LAL  AL  K  
Sbjct: 59  GKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYHLKINKKQKRLALEFALHQKAE 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + V+D++     KTK     F+ ++   + +      + N  LA RN+ N  L    
Sbjct: 119 MGKLYVVDSIEIASGKTKDAYKMFQEIN-ERSTLFVTQLSNENTFLAFRNLKNCYLADAN 177

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +     +V+ K+  E +
Sbjct: 178 ELNAYLVAAFRSVVIEKTVFEEI 200


>gi|325118901|emb|CBZ54453.1| putative 50S ribosomal protein L4 [Neospora caninum Liverpool]
          Length = 766

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 8/195 (4%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGR 72
           G + +  DIF L  +  IL R   W   R   G ++     + E   +  K+  Q+ +GR
Sbjct: 376 GCVVLPNDIFGLALRPDILYRC-YWFYRRAIAGWTERMQLFKWEWPGSKRKLRPQQRSGR 434

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           AR   +       G KA    P      + K++    L+  LS KF    I V+D+   +
Sbjct: 435 ARIGWRKAPGKYVGVKAHPLRPHDQRIKINKRLLWQGLKIMLSAKFAQGQIKVVDHFNLQ 494

Query: 133 ECKTKYLVTRFRA-----LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
             KTK+ V   R         +  +      ++ NF+ A  +I  +    V+G+NVY++L
Sbjct: 495 SHKTKHCVRHLRRILGRKCPSALLVHEGTTDVNDNFRYATAHILAVRRENVEGVNVYNLL 554

Query: 188 RCSKLVLSKSAIEAL 202
           +  +LV+++ A+  L
Sbjct: 555 KYRQLVITEKALLKL 569


>gi|67541346|ref|XP_664447.1| hypothetical protein AN6843.2 [Aspergillus nidulans FGSC A4]
 gi|40739052|gb|EAA58242.1| hypothetical protein AN6843.2 [Aspergillus nidulans FGSC A4]
          Length = 200

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 6/182 (3%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             ++ IL R + ++    R G + +K R +V  +  K+Y QKGTGRAR   K     RGG
Sbjct: 2   PLRKDILHRAVVYEGDMTRQGTASTKWRGDVHGSNRKLYAQKGTGRARVGDKKSPIRRGG 61

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV-SKECKTKYLVTRFRA 145
           G AFGP P      LP+K+   A R ALS ++    +++IDN +   E  T Y +     
Sbjct: 62  GVAFGPHPRDFSTELPRKIYDQAWRIALSYRYRRGQLIIIDNEIGIPEDATPYFIKEIFK 121

Query: 146 LDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
            +          +   ++        R++  +  +L    ++V D+L   +L++ K A++
Sbjct: 122 FNRWGREFGRSTLITDRVHEELFETVRSVGEDAKILDRGDVDVKDLLETGRLIVEKRALD 181

Query: 201 AL 202
            +
Sbjct: 182 RI 183


>gi|240275291|gb|EER38805.1| 50S ribosomal protein L4 [Ajellomyces capsulatus H143]
 gi|325091126|gb|EGC44436.1| 50S ribosomal protein [Ajellomyces capsulatus H88]
          Length = 286

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +G K+  QKGTGRAR   K     RG
Sbjct: 89  LPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSGRKIRPQKGTGRARLGDKKSPMLRG 148

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND-IMVIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LPKKV  LA R ALS ++     I+V DN+   +  + + +T   
Sbjct: 149 GGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPQEVSPHWLTDVF 208

Query: 145 ALDLSNAL----IIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
             +         ++           A   I  +  +L  + ++V D+L   +L++ K+A+
Sbjct: 209 EKNQWGKCFGRSLMITEVKKERLFKAVAQIGQHARVLDREDVDVKDLLETGRLIVEKTAL 268

Query: 200 EA 201
           + 
Sbjct: 269 DR 270


>gi|225561687|gb|EEH09967.1| 50S ribosomal protein L4 [Ajellomyces capsulatus G186AR]
          Length = 286

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +G K+  QKGTGRAR   K     RG
Sbjct: 89  LPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSGRKIRPQKGTGRARLGDKKSPMLRG 148

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND-IMVIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LPKKV  LA R ALS ++     I+V DN+   +  + + +T   
Sbjct: 149 GGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPQEVSPHWLTDVF 208

Query: 145 ALDLSNAL----IIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
             +         ++           A   I  +  +L  + ++V D+L   +L++ K+A+
Sbjct: 209 EKNQWGKCFGRSLMITEVKKERLFKAVAQIGQHARVLDREDVDVKDLLETGRLIVEKTAL 268

Query: 200 EA 201
           + 
Sbjct: 269 DR 270


>gi|34558026|ref|NP_907841.1| 50S ribosomal protein L4 [Wolinella succinogenes DSM 1740]
 gi|46577164|sp|Q7M8D5|RL4_WOLSU RecName: Full=50S ribosomal protein L4
 gi|34483744|emb|CAE10741.1| 50S RIBOSOMAL PROTEIN L4 [Wolinella succinogenes]
          Length = 204

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  + N + +  G +++ E     +     L   ++      R   +K+K R EV+  
Sbjct: 1   MSKAIILNNELQKNGEVALPERF--KEIHSHNLYLYVKSYLASLRANSAKAKKRGEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + GP         + KK + LAL++AL +K  
Sbjct: 59  GKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYDLKVNKKQKKLALQYALMEKAE 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + V+D+L     KTK     F+      + +      D    LA RN+    L    
Sbjct: 119 QGKLYVVDSLQVDSGKTKDAYAMFKT-LNERSTLFVSQISDEKTFLAFRNLKECYLADAN 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +     +V+ KS  E +  
Sbjct: 178 ELNAYLVAAFRSVVIEKSLFENITK 202


>gi|215400771|ref|YP_002327532.1| ribosomal protein L4 [Vaucheria litorea]
 gi|194441221|gb|ACF70949.1| ribosomal protein L4 [Vaucheria litorea]
          Length = 220

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 103/207 (49%), Gaps = 7/207 (3%)

Query: 5   SVRNLDGEDKGVISVS-EDIFALKPQQG--ILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ N + E+   ++++    +  K  +   +L R L+ Q   +R G S +K R+EV   G
Sbjct: 13  TLTNDNKENITTLTLNIPKHYESKINKSNYLLHRALQTQLTNERQGTSNTKTRAEVQGGG 72

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +RGGG  FGP      + + +K   L+LR  L +K    
Sbjct: 73  RKPWKQKGTGRARAGSNRSPLWRGGGVIFGPKIKKFSNKINRKEWRLSLRLLLLNK--QK 130

Query: 122 DIMVIDNLVSKECKTKYLVTRFRA--LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +I +I+ +     KTK ++       +D    L+I     D N +   +N+ N+ LL   
Sbjct: 131 NITIINTIFLDFFKTKNIIQYILKLGIDPLQKLVIIIPNYDENLRRGTKNLKNVQLLKAN 190

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRF 206
            +N+ DIL+   + +  ++++ +E+ +
Sbjct: 191 CLNIKDILKAEHIFIDINSLKIIEETY 217


>gi|71033543|ref|XP_766413.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68353370|gb|EAN34130.1| hypothetical protein, conserved [Theileria parva]
          Length = 439

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 18/201 (8%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGRARHS 76
           V  DIF L  +  IL R  ++   R + G S+     + E   +  K   Q+ TG+AR  
Sbjct: 112 VPNDIFGLPLRPDILHRCYQFYR-RAKAGYSEDMQLYKWEWPGSTKKWRKQQKTGKARIG 170

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKK----------VRSLALRHALSDKFCSNDIMVI 126
            K       G  A    P      + ++               L+  LS KF  + I V+
Sbjct: 171 WKKSPGKYMGVFAHPLRPHDNRTKIQRRSTLIFLTRFLALYTGLKIMLSAKFAQSQIQVV 230

Query: 127 DNLVSKECKTKYLVTRFRA-----LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+ +    KTKY V   R       + +  +       + NF+ +  NIP++    V+G+
Sbjct: 231 DSFLMASHKTKYAVQNLRRILGDRCNSALLVFEGVSDSNENFRWSTANIPSVRRETVEGV 290

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           NVY++L+  +LV++++A++ L
Sbjct: 291 NVYNLLKYRQLVITQAALKKL 311


>gi|119174603|ref|XP_001239657.1| hypothetical protein CIMG_09278 [Coccidioides immitis RS]
          Length = 261

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++    R G + +K RSEV  +  K+  QKGTGRAR   K     RG
Sbjct: 64  LPLRRDILHRAVVYEGDMARQGTANTKWRSEVRGSRKKIRPQKGTGRARLGDKKSPMLRG 123

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND-IMVIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LP+K+   A R ALS ++     I+V DN+   +  T + +    
Sbjct: 124 GGVAHGPHPRDFSTELPQKIYDKAWRTALSYRYRRGQLIIVNDNISMPKDTTVHFLKEIF 183

Query: 145 ALDLSNAL----IIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
                       ++           +   I     +L  + ++V D+L   +L++ K A+
Sbjct: 184 DTHNWGKKFGRSLLITEVKKEKLFRSIAEISEEARVLDREDVDVKDLLETGRLIIEKMAL 243

Query: 200 EA 201
           + 
Sbjct: 244 DR 245


>gi|183508831|ref|ZP_02958283.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182675798|gb|EDT87703.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 211

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + ++DG     + V+ D+F   P +  +   +  ++  +R G   +  + EV   
Sbjct: 1   MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QK TG+AR  S     + GGG  FGP P    +  +  KVR LA + AL+ K  
Sbjct: 61  GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLP 177
              ++ ++ N   +   TK +V      +  +  +++       N + +  N+  +    
Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIADNFSNIKKSTNNLQKVTTKL 180

Query: 178 VQGINVYDILRCSKLVLSKSAI 199
              ++V D++  + +V+++ A 
Sbjct: 181 WYQVSVRDLMHANVVVVAEEAF 202


>gi|308190094|ref|YP_003923025.1| 50S ribosomal protein L4 [Mycoplasma fermentans JER]
 gi|319777390|ref|YP_004137041.1| putative 50S ribosomal protein l4 [Mycoplasma fermentans M64]
 gi|307624836|gb|ADN69141.1| 50S ribosomal protein L4 [Mycoplasma fermentans JER]
 gi|318038465|gb|ADV34664.1| Putative 50S ribosomal protein L4 [Mycoplasma fermentans M64]
          Length = 377

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ + + D +      + +++FA     +  +   +      +R G    K RSEV+  G
Sbjct: 177 KVILLHFDNKA-----LPKELFASPKIYEQAIFDTIMADRASRRQGTHDVKNRSEVSGGG 231

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     + GGG+AFGP P         K    A   +      + 
Sbjct: 232 KKPWRQKGTGRARAGSTRSPIWVGGGRAFGPTPERNYSLKVNKKVRRAAFLSALTLLSNK 291

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
             +VID+    +  TK  V + ++L + N   I     D     +  N+ N+  +    +
Sbjct: 292 KSVVIDDFKMSKISTKDAVNKLKSLKIENLKHILVVTTDETVYKSTANLQNVLCVKPNSV 351

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +V +++    LVLS   ++  E R K
Sbjct: 352 SVENLVWADVLVLSNEGLKNFEGRIK 377


>gi|185178723|ref|ZP_02964539.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024290|ref|ZP_02996980.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518685|ref|ZP_03004113.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524431|ref|ZP_03004451.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867658|ref|ZP_03079660.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|209554081|ref|YP_002284631.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|225550540|ref|ZP_03771489.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
 gi|225551132|ref|ZP_03772078.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|226731441|sp|B5ZB41|RL4_UREU1 RecName: Full=50S ribosomal protein L4
 gi|184209322|gb|EDU06365.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018963|gb|EDU57003.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997750|gb|EDU66847.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659694|gb|EDX53074.1| ribosomal protein L4 [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660715|gb|EDX53970.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|209541582|gb|ACI59811.1| ribosomal protein L4/L1 family [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225378947|gb|EEH01312.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 8 str.
           ATCC 27618]
 gi|225379694|gb|EEH02056.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 2 str.
           ATCC 27814]
          Length = 211

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + ++DG     + V+ D+F   P +  +   +  ++  +R G   +  + EV   
Sbjct: 1   MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QK TG+AR  S     + GGG  FGP P    +  +  KVR LA + AL+ K  
Sbjct: 61  GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLP 177
              ++ ++ N   +   TK +V      +  +  +++       N + +  N+  +    
Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIADHFSNIKKSTNNLQKVTTKL 180

Query: 178 VQGINVYDILRCSKLVLSKSAI 199
              ++V D++  + +V+++ A 
Sbjct: 181 WYQVSVRDLMHANVVVVAEEAF 202


>gi|238810296|dbj|BAH70086.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 378

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ + + D +      + +++FA     +  +   +      +R G    K RSEV+  G
Sbjct: 178 KVILLHFDNKA-----LPKELFASPKIYEQAIFDTIMADRASRRQGTHDVKNRSEVSGGG 232

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     + GGG+AFGP P         K    A   +      + 
Sbjct: 233 KKPWRQKGTGRARAGSTRSPIWVGGGRAFGPTPERNYSLKVNKKVRRAAFLSALTLLSNK 292

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
             +VID+    +  TK  V + ++L + N   I     D     +  N+ N+  +    +
Sbjct: 293 KSVVIDDFKMSKISTKDAVNKLKSLKIENLKHILVVTTDETVYKSTANLQNVLCVKPNSV 352

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +V +++    LVLS   ++  E R K
Sbjct: 353 SVENLVWADVLVLSNEGLKNFEGRIK 378


>gi|304373189|ref|YP_003856398.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis HUB-1]
 gi|304309380|gb|ADM21860.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis HUB-1]
 gi|330723951|gb|AEC46321.1| 50S ribosomal protein L4 [Mycoplasma hyorhinis MCLD]
          Length = 295

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 10/208 (4%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFA-LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
            ++++ N        +S+  ++F   +     +   + ++   +R    K K R+EV+ T
Sbjct: 96  AKVNITN-------KVSLPNELFGKTEIHSQAIFDTILYERGSRRNPTHKVKSRAEVSGT 148

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKGTG+AR  S     F GGG+AFGP         L KKVR LA   ALS    
Sbjct: 149 GKKPWKQKGTGKARAGSLRSPIFVGGGRAFGPTNNKNYKIKLNKKVRKLAFASALSQLAQ 208

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +N ++V D    KE  TK LV +  +  L+    +          L+ARN+ N+ +    
Sbjct: 209 NNQVLVSD-FAQKEISTKTLVKKLASEKLNELKNVLIISSSSELFLSARNLQNVKVTKWS 267

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            I V D+++    ++S+S I+ LE RFK
Sbjct: 268 SILVEDLVKADVFIISESDIKNLEGRFK 295


>gi|4680695|gb|AAD27737.1|AF132962_1 CGI-28 protein [Homo sapiens]
          Length = 311

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 4/202 (1%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+EV   G K    +
Sbjct: 72  FEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGGKPLAAE 131

Query: 69  GTGRARHSSKS-VSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
                        +  R     + P P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 132 RHWAGPAWQHPLSALARRRCCPWPPGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMD 191

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQGINVY 184
           +L       +YL          +++++      ++ ++   A   +   NL+P  G+NV+
Sbjct: 192 SLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVH 251

Query: 185 DILRCSKLVLSKSAIEALEDRF 206
            +L+   LVL+   +  LED+ 
Sbjct: 252 SMLKHQTLVLTLPTVAFLEDKL 273


>gi|13357792|ref|NP_078066.1| 50S ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170762012|ref|YP_001752315.1| 50S ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC
           27815]
 gi|171920440|ref|ZP_02931752.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186701899|ref|ZP_02971552.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|46577295|sp|Q9PQQ9|RL4_UREPA RecName: Full=50S ribosomal protein L4
 gi|189042890|sp|B1AIM1|RL4_UREP2 RecName: Full=50S ribosomal protein L4
 gi|11276689|pir||A82915 ribosomal protein L4 UU232 [imported] - Ureaplasma urealyticum
 gi|6899202|gb|AAF30641.1|AE002122_10 ribosomal protein L4 [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827589|gb|ACA32851.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902892|gb|EDT49181.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|186700632|gb|EDU18914.1| ribosomal protein L4/L1 family [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 211

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 3/202 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ + ++DG     + V+ D+F   P +  +   +  ++  +R G   +  + EV   
Sbjct: 1   MAKIKLLSIDGNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QK TG+AR  S     + GGG  FGP P    +  +  KVR LA + AL+ K  
Sbjct: 61  GKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPNRNYNLKVNAKVRLLAFKSALTIKLN 120

Query: 120 SNDIM-VIDNLVSKECKTKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLP 177
              ++ ++ N   +   TK +V      +  +  +++       N + +  N+  +    
Sbjct: 121 EGKMLGLVANSDLETPSTKKMVNFINNANLENQKVLLVIVDNFSNIKKSTNNLQKVTTKL 180

Query: 178 VQGINVYDILRCSKLVLSKSAI 199
              ++V D++  + +V+++ A 
Sbjct: 181 WYQVSVRDLMHANVVVVAEEAF 202


>gi|315320565|ref|YP_004072622.1| 50S ribosomal protein L4 [Thalassiosira oceanica CCMP1005]
 gi|283569038|gb|ADB27575.1| 50S ribosomal protein L4 [Thalassiosira oceanica CCMP1005]
          Length = 214

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 16/208 (7%)

Query: 15  GVISVSEDIFALKPQQG----ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGT 70
             I  +ED+  L   +     ++ R +  Q   ++ G   +K RSEV   G K + QKGT
Sbjct: 5   KSIEFNEDVIKLNVLEDSGNYLIHRDILRQQISQKQGTVSTKTRSEVRGGGKKPWQQKGT 64

Query: 71  GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-----V 125
           GRAR  S     +RGGG  FGP P + V  L KK R LA++  L +K  +  +      +
Sbjct: 65  GRARAGSSRSPLWRGGGVIFGPKPRMTVLKLNKKERKLAVQTLLYNKRKNILVSAKLEEL 124

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIID-------GCQLDRNFQLAARNIPNINLLPV 178
              L   + KTK   +  +     +                 + F LA RN+ N+ ++  
Sbjct: 125 GKELEFTDNKTKKFYSFCKKELNIDLNKTKLLLVSESSGSASKTFWLATRNLKNVEVISS 184

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
             +N   +L+  +++++  A+  +++ +
Sbjct: 185 ANLNTLSLLKAERILITPIALNNIKEIY 212


>gi|154174036|ref|YP_001409152.1| 50S ribosomal protein L4 [Campylobacter curvus 525.92]
 gi|226730633|sp|A7H110|RL4_CAMC5 RecName: Full=50S ribosomal protein L4
 gi|112802266|gb|EAT99610.1| ribosomal protein L4/L1 family [Campylobacter curvus 525.92]
          Length = 204

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E+ G + +       +     L   ++      R   + +K R+ V+  
Sbjct: 1   MSKILVLNDKFENSGELELPASY--AEVNPHNLYLYVKSYLAGMRANTAHTKSRAYVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+ K  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNEKNYFQKVNKKQKRLALECALAQKAE 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +  +  +D+L  +  KTK       AL+L +ALI+    LD    LA RN+ N  ++   
Sbjct: 119 AGKLFAVDSLAVESGKTKDAAKIIEALNLRDALIVKDL-LDDKTLLAFRNMANCYVVDAS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +   S +++ K+ ++ +  
Sbjct: 178 EVNAYLVSVFSSVIVEKAVLQTITK 202


>gi|268680586|ref|YP_003305017.1| ribosomal protein L4/L1e [Sulfurospirillum deleyianum DSM 6946]
 gi|268618617|gb|ACZ12982.1| ribosomal protein L4/L1e [Sulfurospirillum deleyianum DSM 6946]
          Length = 204

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    V N   E+ G +++       +     L   ++      R   + SK + EV+  
Sbjct: 1   MSSAIVLNEKLENVGALALPASF--EEIHSHNLYLYVKSYQAALRSNTAHSKTKGEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S+    + GGG AFGP         + KK + LAL  AL++K  
Sbjct: 59  GKKPWAQKGRGGARAGSRRSPVWVGGGAAFGPKANRNYDLKVNKKQKRLALEFALNEKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +N + V+D+L  +  KTK   +  + L   +A +I    +D    LA RNI N  L+   
Sbjct: 119 NNALFVVDSLNIESGKTKDAASIIKTLGTRDA-LIVKELVDEKTMLAFRNIQNCYLVDAS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y       +++ KS +E +  
Sbjct: 178 ELNAYLATAFYAVIIEKSVLETITK 202


>gi|296809728|ref|XP_002845202.1| 54S ribosomal protein YmL6 [Arthroderma otae CBS 113480]
 gi|238842590|gb|EEQ32252.1| 54S ribosomal protein YmL6 [Arthroderma otae CBS 113480]
          Length = 291

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +G K+  QKG+GRAR   K     RG
Sbjct: 94  LPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGSGRARLGDKKSPMLRG 153

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV-IDNLVSKECKTKYLVTRFR 144
           GG A GP P      LP+K+   A R ALS ++    ++V  DN+  +   T +L+    
Sbjct: 154 GGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVINDNISLERGSTVHLLHDII 213

Query: 145 ALDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
                        +           A   +  +   L    ++V D+L   +L++ K A+
Sbjct: 214 QTHGWGREFGRSSLITEVKKERLFRAVAELGRDARALDRADVDVKDLLETGRLIIEKQAL 273

Query: 200 EA 201
           + 
Sbjct: 274 DK 275


>gi|221053458|ref|XP_002258103.1| hypothetical protein in Apicomplexan species [Plasmodium knowlesi
           strain H]
 gi|193807936|emb|CAQ38640.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
          Length = 589

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 12/216 (5%)

Query: 3   ELSVRNL----DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSE 56
           E+ +       D E+   +SV  DIF L  +  IL +   +       G ++     + E
Sbjct: 174 EIPIYKFECGPDDENIKYMSVPNDIFGLPIRPDILHKCYYFYRT-ALAGYTERMQLYKWE 232

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
              +  K   QK +G+AR + +       G K     P      + +K+    ++  LS 
Sbjct: 233 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPLRPFDQRTKINRKLLWKGMKIMLSA 292

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFR-----ALDLSNALIIDGCQLDRNFQLAARNIP 171
           KF  + I V+DN + K  KTKY V   R       + +  +      ++ NF  A  NI 
Sbjct: 293 KFAQDQIKVVDNFLIKSHKTKYAVKYLRNILGNNCNSALLVHEGKTDVNDNFFWACANIV 352

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           ++    V G+N+Y++L+   +V +  A++ L    K
Sbjct: 353 SVKRENVHGVNIYNLLKYRYVVFTYKALQNLIYELK 388


>gi|297581435|ref|ZP_06943358.1| ribosomal protein L4 [Vibrio cholerae RC385]
 gi|297534273|gb|EFH73111.1| ribosomal protein L4 [Vibrio cholerae RC385]
          Length = 140

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL V     +    ++VSE  F  +  + ++ +V+   +   R G    K RSEV+  G
Sbjct: 1   MELMV-----KGANALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGG 55

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
           +K + QKGTGRAR  +     +R GG  F   P      + KK+   A++  LS+     
Sbjct: 56  AKPWRQKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQE 115

Query: 122 DIMVIDNLVSKECKTKYLVTRFRA 145
            ++V++N   +  KTK LV + + 
Sbjct: 116 RLIVVENFSVEAPKTKALVAKLKE 139


>gi|99032310|pdb|2FTC|D Chain D, Structural Model For The Large Subunit Of The Mammalian
           Mitochondrial Ribosome
 gi|251837156|pdb|3IY9|D Chain D, Leishmania Tarentolae Mitochondrial Large Ribosomal
           Subunit Model
          Length = 175

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 4/175 (2%)

Query: 34  ARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV 93
            +V  WQ   KRI  +K+K R+EV   G K + QKGTGRARH S     +RGGG A GP 
Sbjct: 1   HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR 60

Query: 94  -PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNAL 152
            P    + LP KVR+L L+ AL+ K   +D+ ++D+L       +YL          +++
Sbjct: 61  GPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSV 120

Query: 153 IIDG---CQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204
           ++      ++ ++   A   +   NL+P  G+NV+ +L+   LVL+   +  LED
Sbjct: 121 LLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLED 175


>gi|222617092|gb|EEE53224.1| hypothetical protein OsJ_36122 [Oryza sativa Japonica Group]
          Length = 227

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 1/143 (0%)

Query: 64  MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI 123
            Y QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     +
Sbjct: 78  PYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKL 137

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQGIN 182
           +V ++L     KTK +V+    ++ +  ++ +DG  +D+  +LA +N+  +N+LP  G+N
Sbjct: 138 LVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGLN 197

Query: 183 VYDILRCSKLVLSKSAIEALEDR 205
           VY IL+   LV+++ A+  + +R
Sbjct: 198 VYSILQHDTLVMTRDAVNRIVER 220


>gi|32266878|ref|NP_860910.1| 50S ribosomal protein L4 [Helicobacter hepaticus ATCC 51449]
 gi|46577204|sp|Q7VGE3|RL4_HELHP RecName: Full=50S ribosomal protein L4
 gi|32262930|gb|AAP77976.1| ribosomal protein L4 [Helicobacter hepaticus ATCC 51449]
          Length = 207

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 4/203 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  + +   +    +++ E     + ++  L   ++      R   + +K R EV+  
Sbjct: 1   MSKAILLDKKLQQSNELALPERY--AQIKEHNLYLYVKSYLSSLRANSASAKKRGEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + GP         + KK + LAL  AL  K  
Sbjct: 59  GKKPWKQKGGGRARAGSITSPVFVGGGVSHGPSNDKNYTLKINKKQKRLALECALFQKAQ 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + V+D+L     KTK     F+AL    + +      D    LA RN+    L    
Sbjct: 119 EGKLFVVDSLAMPSGKTKDAYAMFKALK-QRSTLFVAQMSDEPTFLAFRNLQQCYLADAN 177

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +     +V+ K+  + +
Sbjct: 178 ELNAYLVAAFRSVVIEKAVFDEI 200


>gi|309799059|ref|ZP_07693312.1| ribosomal protein L4/L1 family [Streptococcus infantis SK1302]
 gi|308117294|gb|EFO54717.1| ribosomal protein L4/L1 family [Streptococcus infantis SK1302]
          Length = 149

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 75/139 (53%)

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           KGTGRAR  S    Q+RGGG  FGP P    + LP+KVR LAL+   S+K   N  + +D
Sbjct: 10  KGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVD 69

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
           +L     KT        AL + + +++   + +    L+ARN+PN+ +      +V DI 
Sbjct: 70  SLEFTAPKTAEFAKVLAALSIDSKVLVILEEGNEFAALSARNLPNVKVATATTASVLDIA 129

Query: 188 RCSKLVLSKSAIEALEDRF 206
              KL+++++AI  +E+  
Sbjct: 130 NSDKLLVTQAAISKIEEVL 148


>gi|32491293|ref|NP_871547.1| 50S ribosomal protein L4 [Wigglesworthia glossinidia endosymbiont
           of Glossina brevipalpis]
 gi|46577256|sp|Q8D211|RL4_WIGBR RecName: Full=50S ribosomal protein L4
 gi|25166500|dbj|BAC24690.1| rplD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 201

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 1/179 (0%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGR 72
            K  + +SE IF  K  + ++ +V+R     KR G S  K RSEV  +G K + QKGTGR
Sbjct: 8   SKEKVKISEKIFGQKFNESLVHQVVRSYRITKRQGTSAQKSRSEVIGSGKKPWRQKGTGR 67

Query: 73  ARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           AR  S     +R GG  F        H + KK+   AL+   S+    N I+++ N   K
Sbjct: 68  ARAGSVKSPIWRSGGVTFAKKTRDFKHKINKKMYKNALKSIFSELCRQNRILIVKNFFVK 127

Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
             KTK L  +   ++L N  +I    +D+N  L++RN+  +++     IN  +++   K
Sbjct: 128 SEKTKLLKKKLNEMNLENV-LIISKTIDKNLVLSSRNLNKVHVCFPININPINLISFKK 185


>gi|315304964|ref|ZP_07875049.1| ribosomal protein L4/L1 family [Listeria ivanovii FSL F6-596]
 gi|313626666|gb|EFR95714.1| ribosomal protein L4/L1 family [Listeria ivanovii FSL F6-596]
          Length = 109

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/108 (40%), Positives = 61/108 (56%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +LS+   DG + G I++++ +F ++P + ++  V+  Q    R G  K K RSEV   
Sbjct: 1   MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL 108
           G K + QKGTGRAR  S    Q+RGGG  FGP P    + LPKKV   
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVXXH 108


>gi|84998326|ref|XP_953884.1| hypothetical protein [Theileria annulata]
 gi|65304881|emb|CAI73206.1| hypothetical protein, conserved [Theileria annulata]
          Length = 464

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 18/201 (8%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKGTGRARHS 76
           V  DIF L  +  IL R  ++   R + G S+     + E   +  K   Q+ +G+AR  
Sbjct: 112 VPNDIFGLPIRPDILHRCYQFYR-RAKAGYSEDMQLYKWEWPGSTKKWRKQQKSGKARIG 170

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKK----------VRSLALRHALSDKFCSNDIMVI 126
            K       G  A    P      + ++               L+  LS KF  + I V+
Sbjct: 171 WKKSPGKYVGVFAHPLRPKDNRTKIQRRSKLVFLIRFLALYTGLKIMLSAKFAQSQIQVV 230

Query: 127 DNLVSKECKTKYLVTRFRA-----LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           D+ +    KTKY V   R       + +  +       + NF+ +  NIP++    V+G+
Sbjct: 231 DSFLMASHKTKYAVQNLRRILGDRCNSALLVFEGLSDSNENFRWSTANIPSVRRETVEGV 290

Query: 182 NVYDILRCSKLVLSKSAIEAL 202
           NVY++L+  +LV+++SA+  L
Sbjct: 291 NVYNLLKYRQLVITQSALRKL 311


>gi|224437284|ref|ZP_03658256.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818]
 gi|313143739|ref|ZP_07805932.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818]
 gi|313128770|gb|EFR46387.1| 50S ribosomal protein L4 [Helicobacter cinaedi CCUG 18818]
          Length = 207

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 4/203 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  + +   +    +++ E     + ++  L   ++      R   +++K R EV+  
Sbjct: 1   MSKAILLDNKLQRSSELALPERY--TQIKEHNLYLYVKSYLASLRANNARAKKRGEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + GP      +  + KK + LAL  AL  K  
Sbjct: 59  GKKPWNQKGGGRARAGSITSPVFVGGGVSHGPSNDRSYNLKINKKQKRLALECALHQKAQ 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + VID++     KTK     F+AL    + +      D    LA RN+    L    
Sbjct: 119 EGKLFVIDSVAMPSGKTKDAYAMFKALK-QRSTLFVAQMSDEPTFLAFRNLQQCYLADAN 177

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N Y +     +V+ K+  + +
Sbjct: 178 ELNAYLVAAFRSVVIEKAVFDEI 200


>gi|77555479|gb|ABA98275.1| ribosomal protein L4/L1 family protein [Oryza sativa Japonica
           Group]
          Length = 288

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 1/144 (0%)

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     
Sbjct: 138 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGK 197

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++V ++L     KTK +V+    ++ +  ++ +DG  +D+  +LA +N+  +N+LP  G+
Sbjct: 198 LLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGL 257

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           NVY IL+   LV+++ A+  + +R
Sbjct: 258 NVYSILQHDTLVMTRDAVNRIVER 281


>gi|148927109|ref|ZP_01810739.1| ribosomal protein L4/L1e [candidate division TM7 genomosp. GTL1]
 gi|147887428|gb|EDK72872.1| ribosomal protein L4/L1e [candidate division TM7 genomosp. GTL1]
          Length = 199

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 5/192 (2%)

Query: 18  SVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           ++ + +FA+  P   +L           R   + +K R EV   G K + QKGTGRAR  
Sbjct: 5   TLPKTVFAVDVPNHELLKLAYEAYLAEARTSAASTKKRGEVRGGGRKPHKQKGTGRARAG 64

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
           S     +RGGG  FGP         L  K + +A+R AL+    +  I+  D  VS   K
Sbjct: 65  SIRSPLWRGGGVTFGPSGNENYKKQLNVKAKRVAVRQALTLAAQAGKIITAD--VSATGK 122

Query: 136 TKYLVTRFRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
           TK +    +         ++   +       A  N+ NI L+    ++V+ +L   K+++
Sbjct: 123 TKDMTAFLKDQKADVRRTLLVVSEKSPELIRATGNLQNIELVRATYLSVFHVLNADKIIM 182

Query: 195 SKSAIEALEDRF 206
           + +AI A+E   
Sbjct: 183 TPTAITAIEAWL 194


>gi|327292594|ref|XP_003230995.1| 50S ribosomal protein L4 [Trichophyton rubrum CBS 118892]
 gi|326466801|gb|EGD92254.1| 50S ribosomal protein L4 [Trichophyton rubrum CBS 118892]
          Length = 298

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +G K+  QKGTGRAR   K     RG
Sbjct: 101 LPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGTGRARLGDKKSPMLRG 160

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LP+K+   A R ALS ++    ++ V DN+  +   + +L+    
Sbjct: 161 GGVAHGPHPRDFSTELPRKIYDKAWRTALSYRYQRGQLIVVNDNISLERGASAHLLHDIF 220

Query: 145 ALDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
                        +           A   I      L    ++V D+L   +L++ K A+
Sbjct: 221 QTHGWGREFGRSSLITEVKKERLFRAVAEIGREARALDRADVDVKDLLETGRLIIEKQAL 280

Query: 200 EA 201
           + 
Sbjct: 281 DK 282


>gi|187734814|ref|YP_001876926.1| ribosomal protein L4/L1e [Akkermansia muciniphila ATCC BAA-835]
 gi|187424866|gb|ACD04145.1| ribosomal protein L4/L1e [Akkermansia muciniphila ATCC BAA-835]
          Length = 202

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 4/204 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +  +   L+      I     +         +  ++      +R G + SK R+EV+   
Sbjct: 1   MSANTFTLEAAAAANIQ----VVGSDKGSQAVHDLIVAYQANRRTGSANSKTRAEVSGNN 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K++ QKGTG ARH  K    F GGG  FGP P      + K  R LALR  L D   ++
Sbjct: 57  KKIFRQKGTGNARHGDKRAPIFVGGGVVFGPRPCDYSKKVNKSTRRLALRRVLGDLIAAS 116

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +  +      + KTK  +   + L  +  ++I     D     AARN+  + L+    +
Sbjct: 117 KVSTVSEFSVADGKTKSFIKAVKDLTDAKKVLIVAASFDETTYRAARNVQEVLLMTAAEV 176

Query: 182 NVYDILRCSKLVLSKSAIEALEDR 205
           N+  ++    ++L  +A+E L  R
Sbjct: 177 NIEQLMNADAVILVDNALETLASR 200


>gi|312601075|gb|ADQ90330.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 168]
          Length = 214

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 1   MIELSVRNLDGEDKGVI-------SVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSK 52
           M ++S  ++  +    +        + + +F   +P    +   +  +   KR+   K K
Sbjct: 1   MNKISEISIQSQKTENLVKFNANDDLPKSLFEQKEPHFQAIFDAILSERASKRLSTHKVK 60

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALR 111
            R+EV+ TG K + QK TG+AR  SK    F GGG+AFGP         + KKV+ LA  
Sbjct: 61  NRAEVSGTGKKPWKQKSTGKARAGSKRSPIFVGGGRAFGPTTQRNYNLKVNKKVKKLAFI 120

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
            ALS    +  I+V D     +  TK LV + +   +     I     D N  L+ARN+P
Sbjct: 121 SALSQLAQNQQILVND-FSMNKISTKLLVDQLKIFKIDQLRHILIASSDPNLFLSARNLP 179

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205
           N+ L+    + V  +++   L++SK+ I  LE R
Sbjct: 180 NVELVKTNSLTVESLIKADLLIISKNEITNLEKR 213


>gi|326472625|gb|EGD96634.1| 50S ribosomal protein L4 [Trichophyton tonsurans CBS 112818]
 gi|326483564|gb|EGE07574.1| 50S ribosomal protein L4 [Trichophyton equinum CBS 127.97]
          Length = 298

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +G K+  QKGTGRAR   K     RG
Sbjct: 101 LPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGTGRARLGDKKSPMLRG 160

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LP+K+   A R ALS ++    ++ V DN+  +   + +L+    
Sbjct: 161 GGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVVNDNISLERGASVHLLHDIF 220

Query: 145 ALDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
                        +           A   I      L    ++V D+L   +L++ K A+
Sbjct: 221 QTHGWGREFGRSSLITEVKKERLFRAVAEIGQEARALDRADVDVKDLLETGRLIIEKQAL 280

Query: 200 EA 201
           + 
Sbjct: 281 DK 282


>gi|302662647|ref|XP_003022975.1| hypothetical protein TRV_02880 [Trichophyton verrucosum HKI 0517]
 gi|291186950|gb|EFE42357.1| hypothetical protein TRV_02880 [Trichophyton verrucosum HKI 0517]
          Length = 259

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +G K+  QKGTGRAR   K     R 
Sbjct: 62  LPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGTGRARLGDKKSPMLRE 121

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LP+K+   A R ALS ++    ++ V DN+  +   + +L+    
Sbjct: 122 GGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVVNDNISLERGASVHLLHDIF 181

Query: 145 ALDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
                        +           A   I      L    ++V D+L   +L++ K A+
Sbjct: 182 QTHGWGREFGRSSLITEVKKERLFRAVAEIGQEARALDRADVDVKDLLETGRLIIEKKAL 241

Query: 200 EA 201
           + 
Sbjct: 242 DK 243


>gi|302497341|ref|XP_003010671.1| hypothetical protein ARB_03373 [Arthroderma benhamiae CBS 112371]
 gi|291174214|gb|EFE30031.1| hypothetical protein ARB_03373 [Arthroderma benhamiae CBS 112371]
          Length = 259

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +G K+  QKGTGRAR   K     RG
Sbjct: 62  LPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKIRPQKGTGRARLGDKKSPMLRG 121

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LP+K+   A R ALS ++    ++ V DN+  +   + +L+    
Sbjct: 122 GGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVVNDNISLERGASVHLLHDIF 181

Query: 145 ALDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
                        +           A   I      L    ++V D+L   +L++ K A+
Sbjct: 182 QTHGWGREFGRSSLITEVKKERLFRAVAEIGQEARALDRADVDVKDLLETGRLIIEKQAL 241

Query: 200 EA 201
           + 
Sbjct: 242 DK 243


>gi|315042063|ref|XP_003170408.1| 54S ribosomal protein YmL6 [Arthroderma gypseum CBS 118893]
 gi|311345442|gb|EFR04645.1| 54S ribosomal protein YmL6 [Arthroderma gypseum CBS 118893]
          Length = 298

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +G K+  QKGTGRAR   K     RG
Sbjct: 101 LPLRRDILHRAVIYEGDKTRQGTASTKWRDDVRGSGRKVRPQKGTGRARLGDKKSPMLRG 160

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV-IDNLVSKECKTKYLVTRFR 144
           GG A GP P      LP+K+   A R ALS ++    ++V  DN+  +   + +L+    
Sbjct: 161 GGVAHGPHPRDFSTDLPRKIYDKAWRTALSYRYQRGQLIVINDNISLERGSSAHLLHDII 220

Query: 145 ALDLSNALI----IDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
                        +           A   I      L    ++V D+L   +L++ K A+
Sbjct: 221 QTHGWGREFGRSSLITEVKKERLFRAVAEIGQEARALDRADVDVKDLLETGRLIIEKQAL 280

Query: 200 EA 201
           + 
Sbjct: 281 DK 282


>gi|323507973|emb|CBQ67844.1| related to 50S ribosomal protein L4 [Sporisorium reilianum]
          Length = 442

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/261 (24%), Positives = 104/261 (39%), Gaps = 55/261 (21%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +L   +     K  + +S  +F    ++ ++   + +    +R G + +KGRS+V  +
Sbjct: 128 MSQLRKGSSAASAKSYVPLSAHVFDAPARRDVIHSAVVYYLDAQRSGTASTKGRSDVRGS 187

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G+AR  + S    RGG  A GP P      LP++VR LALR ALS K+  
Sbjct: 188 MRKLRPQKGSGQARLGTMSNPMLRGGAVAHGPRPRDHSTKLPRRVRELALRSALSSKWRQ 247

Query: 121 NDIMVIDNLVSKECKT----------------------------------KYLVTRFRAL 146
            D+ V+DN       +                                  K         
Sbjct: 248 GDLHVVDNFDWIAPPSSTGPLSRLLSSKGWSDALFLTAPRDPQPSIRSLIKDARPSSSDP 307

Query: 147 DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI------NV---------------YD 185
                  +D  Q  RNF LA+ N+P + L+ +  +      NV               Y+
Sbjct: 308 IYQEQQRLDHNQAIRNFVLASNNLPRVELIELDALTEEYRQNVARTSDDKKKPGELHAYE 367

Query: 186 ILRCSKLVLSKSAIEALEDRF 206
           +LR  K++    A+E LE++ 
Sbjct: 368 VLRRHKVICDLGAVEWLEEKL 388


>gi|51209942|ref|YP_063606.1| ribosomal protein L4 [Gracilaria tenuistipitata var. liui]
 gi|68052933|sp|Q6B8V4|RK4_GRATL RecName: Full=50S ribosomal protein L4, chloroplastic
 gi|50657696|gb|AAT79681.1| 50S ribosomal protein L4 [Gracilaria tenuistipitata var. liui]
          Length = 217

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 2/177 (1%)

Query: 32  ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
           IL R L  Q    R   + ++ R EV+  G K + QKGTGRAR  S     +RGGG  FG
Sbjct: 39  ILHRALIHQLSNHRNRNAHTQTRGEVSGGGRKPWKQKGTGRARAGSNRSPLWRGGGVIFG 98

Query: 92  PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD--LS 149
           P     V+ + KK + LALR  +++KF +  +            TK LV   +  +   +
Sbjct: 99  PRHKKYVNKINKKEKQLALRILINNKFKNTIVTENFISKISTPNTKILVNNLKKYNLDTN 158

Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           N ++I   +   +  L+ RN+ N+ LL    +N+  +L+ + ++++K A++ +   +
Sbjct: 159 NNILIIVNEKSNDLYLSTRNLKNVELLAANHLNIVSLLKANHIIINKDALDIINKMY 215


>gi|170591979|ref|XP_001900747.1| ribosomal protein L4/L1 family protein [Brugia malayi]
 gi|158591899|gb|EDP30502.1| ribosomal protein L4/L1 family protein [Brugia malayi]
          Length = 303

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 4/193 (2%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           IS+  DIF   P+  +L R + WQ   + +  +K   + E+   G K + QK TGR    
Sbjct: 72  ISLHPDIFRTMPRIDLLHRNITWQENYRNLAITKQLSKKEMPGGGHKPWPQKKTGRHHAG 131

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
           S     FR GG A G   P    + LP  +R   L  A++ K   ND++++DN  S    
Sbjct: 132 SIRSPHFRLGGFANGIRGPKTWFYVLPDAIRLEGLCIAVTIKHAQNDLVIVDNFASLPNA 191

Query: 136 TKYLVTRF---RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
               +      R    S   I D  ++  N       IP  N++PV GIN + +++   +
Sbjct: 192 DAQFMHDLADSRNWGYSILFINDSSEVPENMAKVCDEIPTFNVMPVYGINCFSLVKHDTV 251

Query: 193 VLSKSAIEALEDR 205
           + S +A++  + R
Sbjct: 252 IFSLAALQLFQSR 264


>gi|237751235|ref|ZP_04581715.1| 50S ribosomal protein L4 [Helicobacter bilis ATCC 43879]
 gi|229372601|gb|EEO22992.1| 50S ribosomal protein L4 [Helicobacter bilis ATCC 43879]
          Length = 204

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 4/206 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  + +        +++ E     + ++  L   ++      R   +++K R +V+  
Sbjct: 1   MSKAIMLDGRFAKGAEVALPERY--AEIKEHNLYLYVKSYLASLRANNAQAKTRGKVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + GP         + KK + LAL +AL  K  
Sbjct: 59  GKKPWAQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYDLKINKKQKRLALEYALQQKAN 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
              + +I+++  +  KTK    +F+AL    + +      +    LA RN+ +  L    
Sbjct: 119 EGKLFIIESINVESGKTKDAFAQFKALG-QRSTLFVTQVSNEKTFLAFRNLQSCYLADAS 177

Query: 180 GINVYDILRCSKLVLSKSAIEALEDR 205
            +N Y +     +V+ K+  + L  R
Sbjct: 178 ELNAYLVAAFRSVVIEKAVFDELVKR 203


>gi|255954255|ref|XP_002567880.1| Pc21g08410 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589591|emb|CAP95738.1| Pc21g08410 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 311

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 5/181 (2%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
             +  IL R + ++    R G + +K R +V  +  K+Y QKG+GRAR   K     RGG
Sbjct: 92  PTRHDILHRAVVYEGDSTRQGSASTKWRDDVHGSHKKLYAQKGSGRARAGDKMSPVRRGG 151

Query: 87  GKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRF-- 143
           G AFGP P      LP+K+   A R ALS +    +++V+DN +   E  + + +     
Sbjct: 152 GVAFGPHPRDFSTDLPRKIYDQAWRIALSHRLSRGELIVVDNTIDINEASSPFFIKNLIQ 211

Query: 144 -RALDLSNALIIDGCQLDRNFQLAA-RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201
                          + +  F  A  +   +   + V+ ++V ++L  ++LV+ K+A+  
Sbjct: 212 AHGWYHKGRSTFVTLEPNEMFSDAVEKFGNHARTICVEDLDVKNVLERARLVIEKNALHK 271

Query: 202 L 202
           +
Sbjct: 272 I 272


>gi|82540371|ref|XP_724509.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479172|gb|EAA16074.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 605

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 12/216 (5%)

Query: 3   ELSVR----NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSE 56
           E+ +     + +  +   I++  DIF +  +  IL +   +       G ++     + E
Sbjct: 204 EIPIYKFESDENDNNIKFITIPNDIFGVPIRSDILHKCYYFYRT-ALAGYTERMQLYKWE 262

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
              +  K   QK +G+AR + +       G K     P      + +K+    ++  LS 
Sbjct: 263 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPIRPFDQRTKINRKLLWKGMKILLSA 322

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRA-----LDLSNALIIDGCQLDRNFQLAARNIP 171
           KF  + I V+DN + K  KTKY V   R       + +  +      ++ NF  A  NI 
Sbjct: 323 KFAQDQIKVVDNFLIKSHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDNFLWACANIA 382

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           +I    V+G+N+Y++L+   +V +  A++ L    K
Sbjct: 383 SIKRENVEGVNIYNLLKYRYVVFTYKALKNLIYELK 418


>gi|9956063|gb|AAG02005.1| similar to Homo sapiens CGI-28 protein mRNA with GenBank Accession
           Number AF132962
          Length = 211

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/172 (34%), Positives = 92/172 (53%), Gaps = 4/172 (2%)

Query: 39  WQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIG 97
           WQ   KRI  +K+K R+EV   G K + QKGTGRARH S     +RGGG A GP  P   
Sbjct: 2   WQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSY 61

Query: 98  VHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG- 156
            + LP KVR+L L+ AL+ K   +D+ ++D+L       +YL          +++++   
Sbjct: 62  YYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDL 121

Query: 157 --CQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
              ++ ++   A   +   NL+P  G+NV+ +L+   LVL+   +  LED+ 
Sbjct: 122 THEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 173


>gi|269115072|ref|YP_003302835.1| 50S ribosomal protein L4 [Mycoplasma hominis]
 gi|23306474|gb|AAM08936.1| 50S ribosomal protein L4 [Mycoplasma hominis ATCC 23114]
 gi|268322697|emb|CAX37432.1| 50S ribosomal protein L4 [Mycoplasma hominis ATCC 23114]
          Length = 322

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 3/208 (1%)

Query: 3   ELSVRNLDGEDK--GVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           ++SV+  + E       ++ + +F L+      +   +  +   +R+   K+K R EV+ 
Sbjct: 115 KISVKKDNEEHVEFSSENLPKSVFGLEKIYNQAIFDAILSERGSRRLATHKTKTRGEVSG 174

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
           +G K + QK TG AR  S     F GGGK FGP      +    K        +      
Sbjct: 175 SGKKPWDQKHTGNARAGSLRSPIFVGGGKVFGPTTERNYNLKINKKTRRNALLSALTLLA 234

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
            +  +++      +  T+ L+ +     +++   +     +    L+ARN+PN+ +  V 
Sbjct: 235 KDHAVLVKEYSLSKISTRELLIKLNEDKIASLNKVLLVSNNETVFLSARNLPNVTVTKVT 294

Query: 180 GINVYDILRCSKLVLSKSAIEALEDRFK 207
            ++V  +L    LV+S   ++ LE   K
Sbjct: 295 SLSVESLLAADVLVISSDDVKYLEGLVK 322


>gi|54020071|ref|YP_115701.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 232]
 gi|81603667|sp|Q601L4|RL4_MYCH2 RecName: Full=50S ribosomal protein L4
 gi|148887158|sp|Q4A8H2|RL4_MYCH7 RecName: Full=50S ribosomal protein L4
 gi|148887159|sp|Q4AAE1|RL4_MYCHJ RecName: Full=50S ribosomal protein L4
 gi|53987244|gb|AAV27445.1| 50s ribosomal protein L4 [Mycoplasma hyopneumoniae 232]
 gi|144227504|gb|AAZ44280.2| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae J]
 gi|144575315|gb|AAZ53567.2| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 7448]
          Length = 214

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 1   MIELSVRNLDGEDKGVI-------SVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSK 52
           M ++S  ++  +    +        + + +F   +P    +   +  +   KR+   K K
Sbjct: 1   MNKISEISIQSQKTENLVKFNANDDLPKSLFEQKEPHFQAIFDSILSERASKRLSTHKVK 60

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALR 111
            R+EV+ TG K + QK TG+AR  SK    F GGG+AFGP         + KKV+ LA  
Sbjct: 61  NRAEVSGTGKKPWKQKSTGKARAGSKRSPIFVGGGRAFGPTTQRNYNLKVNKKVKKLAFI 120

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
            ALS    +  I+V D     +  TK LV + +   +     I     D N  L+ARN+P
Sbjct: 121 SALSQLAQNQQILVND-FSMNKISTKLLVDQLKIFKIDQLRHILIASSDPNLFLSARNLP 179

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205
           N+ L+    + V  +++   L++SK+ I  LE R
Sbjct: 180 NVELVKTNSLTVESLIKADLLIISKNEITNLEKR 213


>gi|68072025|ref|XP_677926.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498222|emb|CAH98556.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 557

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 12/216 (5%)

Query: 3   ELSVR----NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSE 56
           E+ +     + +  +   I++  DIF +  +  IL +   +       G ++     + E
Sbjct: 196 EIPIYKFESDENDNNIKFITIPNDIFGVPIRSDILHKCYYFYRT-ALAGYTERMQLYKWE 254

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
              +  K   QK +G+AR + +       G K     P      + +K+    ++  LS 
Sbjct: 255 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPIRPFDQRTKINRKLLWKGMKILLSA 314

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRA-----LDLSNALIIDGCQLDRNFQLAARNIP 171
           KF  + I V+DN + K  KTKY V   R       + +  +      ++ NF  A  NI 
Sbjct: 315 KFAQDQIKVVDNFLIKSHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDNFLWACANIA 374

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           +I    V+G+N+Y++L+   +V +  A++ L    K
Sbjct: 375 SIKRENVEGVNIYNLLKYRYVVFTYKALKNLIYELK 410


>gi|77409987|ref|ZP_00786569.1| ribosomal protein L4/L1 family [Streptococcus agalactiae COH1]
 gi|77171403|gb|EAO74690.1| ribosomal protein L4/L1 family [Streptococcus agalactiae COH1]
          Length = 109

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 54/105 (51%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M  + + +  G++   + ++E IF ++P + ++  V+  Q    R G    K RS V+  
Sbjct: 1   MANVKLFDQTGKEVSSVELNEAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGG 60

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKV 105
           G K + QKGTGRAR  S    Q+RGGG  FG  P    + L  KV
Sbjct: 61  GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGTTPRSYGYKLXXKV 105


>gi|145509084|ref|XP_001440486.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407703|emb|CAK73089.1| unnamed protein product [Paramecium tetraurelia]
          Length = 318

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 3/201 (1%)

Query: 10  DGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
           D +  G  I++ ++IF    ++ ++ R++R+     +     +    + A +G+K + QK
Sbjct: 42  DAQPTGQSIALDQEIFNQPIRRDLVQRLVRYTDLYDKKVTKATLALRDAAASGAKNHPQK 101

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
            TGRAR   +       G KA G         LP+KVR  A +  L+         VID 
Sbjct: 102 KTGRARQGHRQRPGRNKGIKAHGRKIRSLRIDLPRKVRLQAYKVGLTAALIEGKFTVIDT 161

Query: 129 LVSKECKTKYLVTRFRALDLSNALI--IDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
               E KTK+LV   +  +     +  +     D  F  A+RN+ N+    V+  N+  I
Sbjct: 162 EKLNEGKTKHLVQLMKGFESFTQPLLIVTSVDPDDLFLRASRNLENLETCTVKEFNIIKI 221

Query: 187 LRCSKLVLSKSAIEALEDRFK 207
           L+   ++++K AI  L +  K
Sbjct: 222 LKFKSILITKEAIIQLTESLK 242


>gi|46130896|ref|XP_389179.1| hypothetical protein FG09003.1 [Gibberella zeae PH-1]
          Length = 322

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 24/206 (11%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ +L   + ++    R G + +K R +V  +  KM  QKGTGRAR  +K     RG
Sbjct: 91  LPLRRDLLHLAVVYEGDNTRQGTASTKTRFDVHGSHRKMRPQKGTGRARMGTKQSPILRG 150

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT-------KY 138
           GGK FGP P      L +KV   A R ALS ++   D++V ++ +     T       KY
Sbjct: 151 GGKTFGPHPRDFGTHLNRKVYDKAWRTALSYRYRQGDLIVCEDGMDLVLPTDYEMVAGKY 210

Query: 139 LVTRFRALDLSN----------------ALIIDGCQLDRNFQLAARNIP-NINLLPVQGI 181
           L    +   L                    +            A   IP +   L ++ +
Sbjct: 211 LKDGLKEAYLKRYMTGVMSNLGLGRAAGRTLFVTGDRREALFDAMEQIPWDGRALGIEDV 270

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +V D+L   K+VL +S ++ L ++ +
Sbjct: 271 DVKDLLETGKVVLERSVLKELIEKHQ 296


>gi|307720137|ref|YP_003891277.1| 50S ribosomal protein L4P [Sulfurimonas autotrophica DSM 16294]
 gi|306978230|gb|ADN08265.1| LSU ribosomal protein L4P [Sulfurimonas autotrophica DSM 16294]
          Length = 204

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 4/202 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +   V N   E    +++ E           L   ++     +R   + +KGRSEV   G
Sbjct: 1   MSAIVLNEKMEKASELALPEAFSG--INPHNLYLYVKSAQAAQRANTATTKGRSEVRGGG 58

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCS 120
            K + QKG GRAR  S+    F GGGKAFG          + KK + LAL  AL++   +
Sbjct: 59  KKPWAQKGGGRARAGSRRSPIFVGGGKAFGSKNNHNYDLKVNKKQKKLALNFALNEHAQN 118

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + ++D++  +  KTK     F+AL   + L +    LD    LA  N+    ++    
Sbjct: 119 GTLFIVDSISVESGKTKDAAAMFKALGQRDTLFVKSL-LDEPTFLAFENLHQTYVVESNE 177

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N Y       +V+ K+  E L
Sbjct: 178 LNAYLAANYRSIVIEKAVWETL 199


>gi|148377808|ref|YP_001256684.1| 50S ribosomal protein L4 [Mycoplasma agalactiae PG2]
 gi|148291854|emb|CAL59244.1| 50S ribosomal protein L4 [Mycoplasma agalactiae PG2]
          Length = 300

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 3/191 (1%)

Query: 19  VSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77
           ++  +FA  K     +   +      +R G    K R+EV   G K + QKGTGRAR  S
Sbjct: 111 LNPKLFASDKIYSQAIFDTIISDRASRRQGTHDVKSRAEVRGGGKKPWRQKGTGRARAGS 170

Query: 78  KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
                + GGG+AFGP P       + KKVR  A    L+    S  ++V D    +   T
Sbjct: 171 TRSPIWVGGGRAFGPTPVRNYKLKVNKKVRFNAFVSVLTLLAQSKAVVVDD-FKLESIST 229

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           K  + +   L +     I     D     +  N+ N+  +    ++V +++    LVLS 
Sbjct: 230 KAAINKLSELGIKEQKHILIATNDEVTYKSVANLQNVICVKPTSVSVENLIWADVLVLST 289

Query: 197 SAIEALEDRFK 207
              E  E R K
Sbjct: 290 EGYENFEGRIK 300


>gi|39943994|ref|XP_361534.1| hypothetical protein MGG_04008 [Magnaporthe oryzae 70-15]
 gi|145014730|gb|EDJ99298.1| hypothetical protein MGG_04008 [Magnaporthe oryzae 70-15]
          Length = 342

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/209 (21%), Positives = 79/209 (37%), Gaps = 29/209 (13%)

Query: 25  ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFR 84
            L  ++ +L   + ++    R G + SK + +V  +  K   QKGTG AR   K     R
Sbjct: 104 DLPFRRDLLHLAVTYEGDGTRQGTASSKTKWDVHGSHRKQAPQKGTGNARVGWKQSPLRR 163

Query: 85  GGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR-- 142
           GGGK+ GP P      +  KV  LA R ALS ++   ++ V+ +           +    
Sbjct: 164 GGGKSHGPHPRDFSTRMNHKVYDLAWRTALSYRYRRGELFVVRDGSLDMPLPADFLALAA 223

Query: 143 -------------------------FRALDLSNALIIDGCQLDRNFQLAARNI--PNINL 175
                                    +      +  ++   +  R    ++  I       
Sbjct: 224 EGRLGRELEDGFVDRMVRETLNPLGWGKEGGRSTFVVSCDKAGRPNLFSSLEIAQKEARA 283

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALED 204
           L V  ++V DIL   ++V+ + A++ L +
Sbjct: 284 LEVDDVDVKDILETGRIVIERRALKRLIE 312


>gi|313678366|ref|YP_004056106.1| ribosomal protein, L4/L1 family [Mycoplasma bovis PG45]
 gi|312950123|gb|ADR24718.1| ribosomal protein, L4/L1 family [Mycoplasma bovis PG45]
          Length = 323

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 3/191 (1%)

Query: 19  VSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77
           ++  +FA  K     +   +      +R G    K R+EV   G K + QKGTGRAR  S
Sbjct: 134 LNPKLFASSKIYSQAIFDTIISDRASRRQGTHDVKSRAEVRGGGKKPWRQKGTGRARAGS 193

Query: 78  KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
                + GGG+AFGP P       + KKVR  A   AL+    S  +++ D    +   T
Sbjct: 194 TRSPIWVGGGRAFGPTPARNYKLKVNKKVRFNAFISALTLLAQSKAVVIDD-FKLESIST 252

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           K  + +   L + N   I     D     +  N+ N+  +    ++V +++    LVLS 
Sbjct: 253 KAAINKLNDLGIKNQKHILIATNDEVTYKSVANLQNVICVKPSSVSVENLIWADVLVLST 312

Query: 197 SAIEALEDRFK 207
              E  E R K
Sbjct: 313 EGYENFEGRIK 323


>gi|86153018|ref|ZP_01071223.1| ribosomal protein L4/L1 family [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843903|gb|EAQ61113.1| ribosomal protein L4/L1 family [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 190

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 4/186 (2%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  G 
Sbjct: 1   KVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGGGK 58

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSN 121
           K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK    
Sbjct: 59  KPWRQKGRGGARAGSTRTNVWIGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAAKG 118

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            +   D+L  +  KTK   T  + L + +ALI+    LD    LA RN+ N  ++ V  +
Sbjct: 119 ALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAYRNLANCYVVDVTEV 177

Query: 182 NVYDIL 187
           N Y ++
Sbjct: 178 NAYLVI 183


>gi|152993894|ref|YP_001359615.1| 50S ribosomal protein L4 [Sulfurovum sp. NBC37-1]
 gi|151425755|dbj|BAF73258.1| 50S ribosomal protein L4 [Sulfurovum sp. NBC37-1]
          Length = 196

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 11/204 (5%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++ +V            + +    L+     L    +  +   R   +++K RS V+  G
Sbjct: 1   MKTTVI-------KTTDLPKAF--LEVHPHNLYLYCKAYASGLRANTAQTKNRSAVSGGG 51

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALSDKFCS 120
            K + QKG GRAR  S     F GGG AFGP         + KK + LAL HAL++   +
Sbjct: 52  KKPWAQKGGGRARAGSLRSPIFVGGGVAFGPSTNKNYDQKVNKKQKKLALYHALAELAAN 111

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + V+DN+  +  KTK  +     L+  +  ++    +D    LA RN+ N  L+    
Sbjct: 112 ERLFVVDNVAIESGKTKDALAFVNGLEQRDV-LVVKEMIDDKTFLAFRNLQNAYLVEANE 170

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           +N Y       +V+ K+  + L +
Sbjct: 171 LNAYLAAAYHSVVIEKAVFDKLTE 194


>gi|224417886|ref|ZP_03655892.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491]
 gi|253827225|ref|ZP_04870110.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491]
 gi|313141428|ref|ZP_07803621.1| 50s ribosomal protein l4 [Helicobacter canadensis MIT 98-5491]
 gi|253510631|gb|EES89290.1| 50S ribosomal protein L4 [Helicobacter canadensis MIT 98-5491]
 gi|313130459|gb|EFR48076.1| 50s ribosomal protein l4 [Helicobacter canadensis MIT 98-5491]
          Length = 204

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  + +   +  G + + E   A       L   ++      R   + +K R  V+  
Sbjct: 1   MSKAIILDNGLKKSGELQLPESYKA--INSHNLYLYIKSFLASMRANNAMAKTRGRVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119
           G K ++QKG GRAR  S +   F GGG + GP         + KK + LAL++AL +K  
Sbjct: 59  GKKPWIQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYNLKVNKKQKKLALQYALQEKAD 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +  + V+D +     KTK     F+ L+  N L++     D    LA RN+ N  L+   
Sbjct: 119 NGSLFVVDKIQIPSGKTKDANAMFKTLNQRNVLLV-SEMFDEKTYLAFRNLKNCYLIDGA 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y       +V+ K+  EA+  
Sbjct: 178 ELNAYLAATFRSVVIEKALFEAITK 202


>gi|307128706|ref|YP_003880736.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri CARI]
 gi|306483168|gb|ADM90038.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri CARI]
          Length = 208

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 96/202 (47%), Gaps = 1/202 (0%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++L++ N +G   G     +     K    I+   ++   + +R G +KSK RSE+  + 
Sbjct: 1   MKLTIFNNNGIKTGRCLKFKKNLLKKENNNIIYLEIKRFLFSQRQGTNKSKERSEITGST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K+  QKG+G AR        FR GG+ FGP P      L K ++   ++  ++ K   N
Sbjct: 61  RKIQRQKGSGNARKGDIKNPIFRSGGRIFGPKPRNYNFKLNKNLKRRVIKDIINLKLKKN 120

Query: 122 DIMVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +I ++++   K  KTK +    +     +  ++I      + F L+ +N+ +I +L +  
Sbjct: 121 NIKILEDFDDKIIKTKLVFNLIKKLNINNKKILIIYDIYKKKFFLSYKNLKSIKILSINE 180

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N + +     L+  +SAI+ +
Sbjct: 181 LNSFHLANADYLIFFESAIKKI 202


>gi|148693200|gb|EDL25147.1| mitochondrial ribosomal protein L4, isoform CRA_a [Mus musculus]
          Length = 300

 Score =  117 bits (293), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 10/208 (4%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSE-VAYTGSKMYVQ 67
            + E  G+  +  D+FA  P+  I+ +V  WQ   +RI  + +K R+E +  T S    Q
Sbjct: 72  FEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAELLNITHSNTLCQ 131

Query: 68  KGTGRARH-----SSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSN 121
             +   R      ++ S +    GG A GP  P    + LP KVR+L L+ AL+ K   +
Sbjct: 132 PSSKFLRSQTSGDTNTSYATVPAGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQD 191

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPV 178
           D+ ++D+L       +YL    +     +++++      ++ +N   A   + + NL+P 
Sbjct: 192 DLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLIPA 251

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            G+NVY +L+   LVL+  ++  LED+ 
Sbjct: 252 VGLNVYSMLKHQTLVLTLPSVAFLEDKL 279


>gi|114675331|ref|XP_001163881.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 1 [Pan
           troglodytes]
          Length = 274

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+EV   G K + QK
Sbjct: 83  FEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQK 142

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           GTGRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 143 GTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMD 202

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQG 180
           +L       +YL          +++++      ++ ++   A   +   NL+P  G
Sbjct: 203 SLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 258


>gi|22547140|ref|NP_666500.1| 39S ribosomal protein L4, mitochondrial isoform b [Homo sapiens]
 gi|12653925|gb|AAH00756.1| Mitochondrial ribosomal protein L4 [Homo sapiens]
 gi|119604491|gb|EAW84085.1| mitochondrial ribosomal protein L4, isoform CRA_b [Homo sapiens]
          Length = 263

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+EV   G K + QK
Sbjct: 72  FEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQK 131

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           GTGRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 132 GTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMD 191

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQG 180
           +L       +YL          +++++      ++ ++   A   +   NL+P  G
Sbjct: 192 SLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247


>gi|55648223|ref|XP_512362.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 6 [Pan
           troglodytes]
 gi|114675325|ref|XP_001163982.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 3 [Pan
           troglodytes]
 gi|114675327|ref|XP_001164017.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 4 [Pan
           troglodytes]
 gi|114675329|ref|XP_001164062.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 5 [Pan
           troglodytes]
          Length = 263

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+EV   G K + QK
Sbjct: 72  FEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQK 131

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           GTGRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 132 GTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMD 191

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNINLLPVQG 180
           +L       +YL          +++++      ++ ++   A   +   NL+P  G
Sbjct: 192 SLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVG 247


>gi|145535756|ref|XP_001453611.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421333|emb|CAK86214.1| unnamed protein product [Paramecium tetraurelia]
          Length = 318

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 2/194 (1%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            I++ ++IF    ++ ++ R++R+     +     +    + A +G+K + QK TGRAR 
Sbjct: 49  SITLDQEIFNQPIRRDLVQRLVRYTDLYDKKVTKATLALRDAAASGAKNHPQKKTGRARQ 108

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
             +       G KA G         LP+KVR  A +  L+         VID     E K
Sbjct: 109 GHRQRPGRNKGIKAHGRKIRSLRIDLPRKVRLQAYKVGLTAALIEGKFTVIDTEKLNEGK 168

Query: 136 TKYLVTRFRALDLSNALI--IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193
           TK+LV   +  +     +  +     D  F  A+RN+ ++    V+  N+  IL+   ++
Sbjct: 169 TKHLVQLMKGFESFTQPLLIVTSVDPDDLFLRASRNLDSLETCTVKEFNIIKILKFKSIL 228

Query: 194 LSKSAIEALEDRFK 207
           ++K AI  L +  K
Sbjct: 229 ITKEAILQLTESLK 242


>gi|295670599|ref|XP_002795847.1| 54S ribosomal protein YmL6 [Paracoccidioides brasiliensis Pb01]
 gi|226284932|gb|EEH40498.1| 54S ribosomal protein YmL6 [Paracoccidioides brasiliensis Pb01]
          Length = 346

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +  K+  QKGTGRAR   K     RG
Sbjct: 149 LPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRG 208

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND-IMVIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LPKK+  LA R ALS ++     I+V DN+      + Y +    
Sbjct: 209 GGVAHGPHPRDFSTKLPKKIYDLAWRTALSYRYQRGQLIIVNDNITFPRDVSPYWLEDVF 268

Query: 145 ALDLSNAL----IIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
             +         ++          +  + I  +  +L  + ++V D+L  ++L++ K A+
Sbjct: 269 EKNQWGKNFGRSLLITEVKKERLFMGVKEISRHGRVLDREDVDVKDLLETARLIVEKQAL 328

Query: 200 EA 201
           + 
Sbjct: 329 DR 330


>gi|15829058|ref|NP_326418.1| 50S ribosomal protein L4 [Mycoplasma pulmonis UAB CTIP]
 gi|46577287|sp|Q98PY2|RL4_MYCPU RecName: Full=50S ribosomal protein L4
 gi|14090002|emb|CAC13760.1| 50S RIBOSOMAL PROTEIN L4 [Mycoplasma pulmonis]
          Length = 292

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 1/191 (0%)

Query: 18  SVSEDIFALKPQQG-ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
            ++  IF  +      +   +  +   +R G  K K R+EV+ TG K + QKGTG+AR  
Sbjct: 102 ELNSKIFEFEKNYDQAIFDCILSERASRRQGTHKVKNRAEVSGTGKKPWKQKGTGKARAG 161

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
           S     F GGG+AFGP           K   L    A       ++ +++     ++  T
Sbjct: 162 SLRNPIFVGGGRAFGPSVNRNYKISINKKVRLNALMASLFALAKSNSVLLKTFSLEKPST 221

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           K LV   R ++ SN   I     D+N  L+ARN+ N+ +  V  + + D++    L+LS 
Sbjct: 222 KDLVEELRKINASNLKRILLVSDDKNIFLSARNLKNVKVTKVTSLMIEDLVAADLLILSN 281

Query: 197 SAIEALEDRFK 207
             I+ LE   K
Sbjct: 282 ENIKYLEGLIK 292


>gi|71893545|ref|YP_278991.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae J]
 gi|72080532|ref|YP_287590.1| 50S ribosomal protein L4 [Mycoplasma hyopneumoniae 7448]
          Length = 206

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 3/190 (1%)

Query: 18  SVSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
            + + +F   +P    +   +  +   KR+   K K R+EV+ TG K + QK TG+AR  
Sbjct: 17  DLPKSLFEQKEPHFQAIFDSILSERASKRLSTHKVKNRAEVSGTGKKPWKQKSTGKARAG 76

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
           SK    F GGG+AFGP         + KKV+ LA   ALS    +  I+V D     +  
Sbjct: 77  SKRSPIFVGGGRAFGPTTQRNYNLKVNKKVKKLAFISALSQLAQNQQILVND-FSMNKIS 135

Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLS 195
           TK LV + +   +     I     D N  L+ARN+PN+ L+    + V  +++   L++S
Sbjct: 136 TKLLVDQLKIFKIDQLRHILIASSDPNLFLSARNLPNVELVKTNSLTVESLIKADLLIIS 195

Query: 196 KSAIEALEDR 205
           K+ I  LE R
Sbjct: 196 KNEITNLEKR 205


>gi|293363474|ref|ZP_06610230.1| ribosomal protein L4/L1 family protein [Mycoplasma alligatoris
           A21JP2]
 gi|292552823|gb|EFF41577.1| ribosomal protein L4/L1 family protein [Mycoplasma alligatoris
           A21JP2]
          Length = 288

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 1/203 (0%)

Query: 6   VRNLDGEDKGVISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           V+++  +      +  ++FA +   +  +   +      +R G  + K R++V+ TG K 
Sbjct: 86  VKSVANKVTFESKLPAELFASEKIYEQAIFDTILSDRASRRQGTHQVKNRAQVSGTGKKP 145

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM 124
           + QKGTGRAR  S     F GGG+AFGP           K    A   +      ++  +
Sbjct: 146 WRQKGTGRARTGSLRTPVFVGGGRAFGPQSERNYSLKVNKKVRFAAFVSALTLLANDKAV 205

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
            ID+L   +  TK LV +   L L++   +     D     +A N+ N+  +    ++V 
Sbjct: 206 AIDDLKLSKISTKDLVAKLTKLKLNDVRHVLVVTEDELVFKSAANLANVVTVKPNSLSVE 265

Query: 185 DILRCSKLVLSKSAIEALEDRFK 207
            ++    +V+S++ ++ LE + K
Sbjct: 266 LLVSADVMVISQAGLKVLEGKAK 288


>gi|225677501|gb|EEH15785.1| 50S ribosomal protein L4 [Paracoccidioides brasiliensis Pb03]
          Length = 263

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +  K+  QKGTGRAR   K     RG
Sbjct: 66  LPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRG 125

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND-IMVIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LPKK+  LA R ALS ++     I+V DN+      + Y +    
Sbjct: 126 GGVAHGPHPRDFSTKLPKKIYDLAWRTALSYRYQRGQLIIVNDNITFPRDVSPYWLEDVF 185

Query: 145 ALDLSNA----LIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAI 199
             +         ++          +  + I  +  +L  + ++V D+L  ++L++ K A+
Sbjct: 186 EKNQWGKSFGRSLLITEVKKERLFMGVKEISRHGRVLDREDVDVKDLLETARLIVEKQAL 245

Query: 200 EA 201
           + 
Sbjct: 246 DR 247


>gi|312069025|ref|XP_003137489.1| hypothetical protein LOAG_01903 [Loa loa]
 gi|307767347|gb|EFO26581.1| hypothetical protein LOAG_01903 [Loa loa]
          Length = 746

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 4/198 (2%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
               +IS+   IF   P+  +L R + WQ   + +  +K   + E+   G K + QK TG
Sbjct: 509 SRVDLISLHPCIFRTMPRIDLLHRNITWQENYRNLAITKQLSKKEMPGGGHKPWPQKKTG 568

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           R    S     FR GG A G   P    + LP  +R   L  A++ K   ND++++D+  
Sbjct: 569 RHHAGSIRSPHFRLGGFANGIRGPKTWFYVLPDAIRLEGLCVAVTIKHAQNDLVIVDDFA 628

Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDR---NFQLAARNIPNINLLPVQGINVYDIL 187
           S        V            ++   +      N      +IP  N++PV GIN + ++
Sbjct: 629 SLPSDEAQFVHDLADSRNWGYSVLFINESSEVSGNLAKVCDDIPTFNVMPVYGINCFSLV 688

Query: 188 RCSKLVLSKSAIEALEDR 205
           +   +V S +A+   + R
Sbjct: 689 KHDTVVFSLAALRLFQSR 706


>gi|47459071|ref|YP_015933.1| 50S ribosomal protein L4 [Mycoplasma mobile 163K]
 gi|81614326|sp|Q6KI54|RL4_MYCMO RecName: Full=50S ribosomal protein L4
 gi|47458400|gb|AAT27722.1| 50S ribosomal protein l4 [Mycoplasma mobile 163K]
          Length = 293

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 11/215 (5%)

Query: 3   ELSVRNLDGEDKG------VISVSEDIFAL---KPQQGILARVLRWQSWRKRIGCSKSKG 53
           ++ V +    +         +S+ + IF L   K     +   + ++   +R G   +K 
Sbjct: 80  KIKVLSSKTNEAKNILFKNTVSLPKGIFGLSEEKINTQAIFDSILFERASQRQGTHSTKT 139

Query: 54  RSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRH 112
           RSEV+  G K + QKGTGRAR  S     + GGG  FGP P       + KKVR+LA   
Sbjct: 140 RSEVSGGGKKPWKQKGTGRARAGSTRSPIWVGGGITFGPKPQKKYDFKINKKVRNLAFLS 199

Query: 113 ALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN 172
           +L+     N I+V D    ++  ++ L+ +   L ++N   I     D     + RN+ N
Sbjct: 200 SLTLLANKNAILVEDL-KLEKISSQELIKKLEDLKINNLKKILIVSDDEKIFKSGRNVQN 258

Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           ++++ +  + V  +     L+LSK  +  LE R K
Sbjct: 259 LHVVKLNSLTVELLNETHALLLSKKDLTTLESRVK 293


>gi|47094373|ref|ZP_00232067.1| ribosomal protein L4/L1 family [Listeria monocytogenes str. 4b
           H7858]
 gi|47017255|gb|EAL08094.1| ribosomal protein L4/L1 family [Listeria monocytogenes str. 4b
           H7858]
          Length = 149

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 71/130 (54%)

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
           S    Q+RGGG  FGP P    + LPKKVR LA++  LS K     ++V++ L     KT
Sbjct: 19  SIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKT 78

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           K      + + +    +I       N +L+ARN+  I ++P + I+V ++ +  KL+++K
Sbjct: 79  KEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESISVLEVAKHDKLIITK 138

Query: 197 SAIEALEDRF 206
           +A+E +E+  
Sbjct: 139 AAVEKVEEVL 148


>gi|322712679|gb|EFZ04252.1| 60S ribosomal protein L4 [Metarhizium anisopliae ARSEF 23]
          Length = 342

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 24/206 (11%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL   + ++    R G + SK R EV  +  K+  QKG+GRAR  ++     RG
Sbjct: 113 LPLRRDILHHAITFEGDNTRQGTASSKTRYEVHGSHRKVRPQKGSGRARLGTRQSPVLRG 172

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID-------NLVSKECKTKY 138
           GGK FGP P      L +KV   A R ALS ++   ++++ +           +    KY
Sbjct: 173 GGKTFGPKPRDFGTKLNRKVYDKAWRTALSYRYRRGELIICEDGMELALPPDFEMLADKY 232

Query: 139 LVTRFRALDLSN----------------ALIIDGCQLDRNFQLAARNIPN-INLLPVQGI 181
           +    R   L                    +            A   +P     L V+ +
Sbjct: 233 MRDGLRETYLQKYMTGVLRTLGLGRADGRTLFVTGDPRERLYEAMEQVPWEGRALDVEDV 292

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +V D+L   K+V+ +S ++ + +R +
Sbjct: 293 DVKDLLETGKVVMERSVLKEMIERHQ 318


>gi|322695303|gb|EFY87113.1| 60S ribosomal protein L4 precursor [Metarhizium acridum CQMa 102]
          Length = 342

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 85/206 (41%), Gaps = 24/206 (11%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL   + ++    R G + SK R EV  +  K+  QKG+GRAR  +K     RG
Sbjct: 113 LPLRRDILHHAITFEGDNTRQGTASSKTRHEVHGSHRKVRPQKGSGRARLGTKQSPVLRG 172

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID-------NLVSKECKTKY 138
           GGK FGP P      L +KV   A R ALS ++   ++++ +           +    KY
Sbjct: 173 GGKTFGPKPRDFGTKLNRKVYDKAWRTALSYRYRRGELIICEDGMELALPPDFEMLADKY 232

Query: 139 LVTRFRALDLSN----------------ALIIDGCQLDRNFQLAARNIPN-INLLPVQGI 181
           +    R   L                    +            A   +P     L V+ +
Sbjct: 233 MKDGLRETYLQKYMTGVLRTLGLGRADGRTLFITGDPRERLYEAMEQVPWEGQALDVEDV 292

Query: 182 NVYDILRCSKLVLSKSAIEALEDRFK 207
           +V D+L   K+V+ +S ++ + +R +
Sbjct: 293 DVKDLLETGKVVMERSVLKEMIERHQ 318


>gi|15612303|ref|NP_223956.1| 50S ribosomal protein L4 [Helicobacter pylori J99]
 gi|7674310|sp|Q9ZJR5|RL4_HELPJ RecName: Full=50S ribosomal protein L4
 gi|4155815|gb|AAD06789.1| 50S RIBOSOMAL PROTEIN L4 [Helicobacter pylori J99]
          Length = 215

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCL-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|237753022|ref|ZP_04583502.1| 50s ribosomal protein l4 [Helicobacter winghamensis ATCC BAA-430]
 gi|229375289|gb|EEO25380.1| 50s ribosomal protein l4 [Helicobacter winghamensis ATCC BAA-430]
          Length = 204

 Score =  115 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M    + + + +  G   + E           L   ++      R   + +K R  V+  
Sbjct: 1   MSAAIILDKNLKKSGEAQLPESY--KDINSHNLYLYIKSFLASMRANNAIAKTRGRVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG A GP      +  + KK + LAL++AL +K  
Sbjct: 59  GKKPWNQKGGGRARAGSITSPVFVGGGVAHGPSNNKNYNLKVNKKQKRLALQYALMEKAN 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +  + ++D +  +  KTK     F+AL+  N L +     D    LA RNI +  L+   
Sbjct: 119 NGSLFIVDKIQVESGKTKDAYMMFKALNQRNTLFV-SELFDEKTFLAFRNIKDCYLIDGV 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y +     +V+ KS  E++  
Sbjct: 178 ELNAYLVATFRSVVIEKSLFESITK 202


>gi|317014709|gb|ADU82145.1| 50S ribosomal protein L4 [Helicobacter pylori Gambia94/24]
          Length = 215

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 12/210 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNERNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  +AL +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDALFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEA 201
              ++ V  +N Y +   S +V+ ++A + 
Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAFQH 207


>gi|124512344|ref|XP_001349305.1| mitochondrial ribosomal protein L4 precursor, putative [Plasmodium
           falciparum 3D7]
 gi|23499074|emb|CAD51154.1| mitochondrial ribosomal protein L4 precursor, putative [Plasmodium
           falciparum 3D7]
          Length = 568

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 12/216 (5%)

Query: 3   ELSVRNLDGEDKGV----ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSE 56
           E+ +   + ++       ISV  DIF L  +  IL +   +       G ++     + E
Sbjct: 174 EIPIYKFEADENDDNIKYISVPNDIFGLPIRSDILHKCYYFYRT-ALAGYTERMQLYKWE 232

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
              +  K   QK +G+AR + +       G K     P      + +K     ++  LS 
Sbjct: 233 WPGSTKKYRSQKKSGKARMNWRKTCGRYLGVKNHPIRPFDQKTNINRKFLWKGMKILLSA 292

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRF-----RALDLSNALIIDGCQLDRNFQLAARNIP 171
           KF  + I V+DN + K  KTKY V        +  + +  +      ++ NF  A  NI 
Sbjct: 293 KFAQDQIKVVDNFLIKSHKTKYTVKYLRNILGKNCNSALLVHEGKTDVNDNFLWACANIA 352

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           ++    V+G+N+Y++L+   +V +  A++ +    K
Sbjct: 353 SVKRENVEGVNIYNLLKYRYVVFTYKALKNIIYELK 388


>gi|208435215|ref|YP_002266881.1| ribosomal protein L4 [Helicobacter pylori G27]
 gi|226730673|sp|B5Z8W6|RL4_HELPG RecName: Full=50S ribosomal protein L4
 gi|208433144|gb|ACI28015.1| ribosomal protein L4 [Helicobacter pylori G27]
          Length = 215

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSMELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVNELNAYLLAAFSSVVMEEAAFQHI 208


>gi|189095433|ref|YP_001936446.1| ribosomal protein L4 [Heterosigma akashiwo]
 gi|157694776|gb|ABV66052.1| 50S ribosomal protein L4 [Heterosigma akashiwo]
 gi|157778007|gb|ABV70193.1| 50S ribosomal protein L4 [Heterosigma akashiwo]
          Length = 231

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 19/222 (8%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +  + + D        +   +   K    ++ R    Q    R G + +K RSEV   G 
Sbjct: 8   KFPIIDGDSSKSESAKLKLRVQNEKGN-YLIHRAFVKQFIESRNGNANTKTRSEVRGGGR 66

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     ++GGG  FGP        L KK   LAL+  L +K  S  
Sbjct: 67  KPWQQKGTGRARAGSNRSPLWKGGGVTFGPKTKTYKIKLNKKEWRLALQTLLFNKKNSIR 126

Query: 123 IM---------VIDNLVSKECKTKYLVTRFRAL---------DLSNALIIDGCQLDRNFQ 164
           ++         +     S   KTK L+               ++ N ++I   +   N  
Sbjct: 127 VIKSFSETFERISKEQGSNPQKTKTLLNFLNQFVKIRNLNSNNIRNKILIVVPKKSLNLI 186

Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             ++N+ NI+++    +N+  +L    ++L   +++ +E+ +
Sbjct: 187 STSQNLKNIDIIAADNLNIKSLLDSKYILLCTESLKIIEETY 228


>gi|261838637|gb|ACX98403.1| ribosomal protein L4 [Helicobacter pylori 51]
          Length = 215

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKSRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y ++  S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLLVAFSSVVMEEAAFQHV 208


>gi|317013105|gb|ADU83713.1| 50S ribosomal protein L4 [Helicobacter pylori Lithuania75]
          Length = 215

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVNELNAYLLAAFSSVVMEEAAFQHV 208


>gi|261840033|gb|ACX99798.1| 50S ribosomal protein L4 [Helicobacter pylori 52]
          Length = 215

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDDKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|325996594|gb|ADZ51999.1| 50S ribosomal protein L4 [Helicobacter pylori 2018]
 gi|325998184|gb|ADZ50392.1| 50S ribosomal protein L4 [Helicobacter pylori 2017]
          Length = 215

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 12/210 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEA 201
              ++ V  +N Y +   S +V+ ++A + 
Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAFQH 207


>gi|242309320|ref|ZP_04808475.1| 50s ribosomal protein l4 [Helicobacter pullorum MIT 98-5489]
 gi|239523891|gb|EEQ63757.1| 50s ribosomal protein l4 [Helicobacter pullorum MIT 98-5489]
          Length = 204

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 4/205 (1%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  + + + +  G   + E           L   ++      R   + +K R  V+  
Sbjct: 1   MSKAIILDKELKKSGEAQLPESY--KSINSHNLYLYIKSFLASMRANNAMAKTRGRVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + GP         + KK + LAL++AL +K  
Sbjct: 59  GKKPWSQKGGGRARAGSITSPVFVGGGVSHGPSNNRNYNLKVNKKQKKLALQYALQEKAD 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           +  + ++D +     KTK   T F+ L+  N L +     D     A RN+    L+   
Sbjct: 119 NGSLFIVDKIQIPSGKTKDAYTMFKTLNQRNILFV-SEMFDEKTYFAFRNLKECYLIDGA 177

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            +N Y       +V+ K+  EA+  
Sbjct: 178 ELNAYLAATFRAVVIEKALFEAITK 202


>gi|313681320|ref|YP_004059058.1| LSU ribosomal protein l4p [Sulfuricurvum kujiense DSM 16994]
 gi|313154180|gb|ADR32858.1| LSU ribosomal protein L4P [Sulfuricurvum kujiense DSM 16994]
          Length = 203

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 4/204 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +   V N   E     ++ E           L   ++      R   + +K RS ++  G
Sbjct: 1   MSAIVLNEKFEKASEAALPESFSG--INPHNLYLYVKSYQASIRANTASAKTRSMISGGG 58

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCS 120
            K + QKG G AR  S+    F GG  A GP         + KK + LAL+ AL     +
Sbjct: 59  KKPWAQKGKGGARAGSRRSPIFVGGAIAHGPNTGRNYDQKINKKQKKLALKCALDALAQA 118

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + ++D +     KTK     F  L++ +AL++    LD N  LA RNI +  ++    
Sbjct: 119 GKLFIVDTIEVPSGKTKDAKVLFDKLNVRDALLVK-KILDENTYLAFRNISSTYVVEENE 177

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           +N +       +V+ K+  E L  
Sbjct: 178 LNAFLAATYRSVVIEKAVWENLTK 201


>gi|71003832|ref|XP_756582.1| hypothetical protein UM00435.1 [Ustilago maydis 521]
 gi|46096113|gb|EAK81346.1| hypothetical protein UM00435.1 [Ustilago maydis 521]
          Length = 438

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 58/256 (22%)

Query: 9   LDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
             G        + +S  +F    ++ ++   + +    +R G + +KGRS+V  +  K+ 
Sbjct: 136 QKGSSTSSKAYVPLSAHVFDAPARRDVIHSAVVYYLDAQRSGTASTKGRSDVRGSMRKLR 195

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKG+G+AR  + S    RGG  A GP P      LP++VR LALR ALS K+   +++V
Sbjct: 196 PQKGSGQARLGTMSNPILRGGAVAHGPRPRDHSTKLPRRVRELALRSALSSKWRQGNLLV 255

Query: 126 IDNLVSKECKT----------------------------------KYLVTRFRALDLSNA 151
           ++NL      +                                  K              
Sbjct: 256 VENLNWTAPPSSTGPLARLLGSKGWSDALFLTAPRDPQPSMRSLIKDARPSSSDPIYDEH 315

Query: 152 LIIDGCQLDRNFQLAARNIPNINLLPVQ---------------------GINVYDILRCS 190
             +   Q  RNF LA+ N+P   L+ +                       ++ Y++LR  
Sbjct: 316 QKLSHQQAIRNFVLASNNLPRAELIELDSLTEEYRDNIAKTSDDKKKPGELHAYEVLRRH 375

Query: 191 KLVLSKSAIEALEDRF 206
           K++    A+E LE++ 
Sbjct: 376 KVICDLGAVEWLEEKL 391


>gi|308064095|gb|ADO05982.1| 50S ribosomal protein L4 [Helicobacter pylori Sat464]
          Length = 215

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRTEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|19113019|ref|NP_596227.1| mitochondrial ribosomal protein subunit Yml6 [Schizosaccharomyces
           pombe 972h-]
 gi|74626916|sp|O74801|RL4P_SCHPO RecName: Full=60S ribosomal protein yml6, mitochondrial
 gi|3687498|emb|CAA21166.1| mitochondrial ribosomal protein subunit Yml6 [Schizosaccharomyces
           pombe]
          Length = 261

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +       + ++ IL R + +++   R G + SK R+E+  +G K+Y QKGTG AR    
Sbjct: 24  IPGSFLQERFRRDILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDA 83

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI-MVIDNLVSKECKTK 137
           S    RGG K+ GP P      L  +V +LA+R ALS +F +N++ ++ + +   + KT+
Sbjct: 84  SSPIRRGGAKSHGPKPRDFSTKLQTQVYNLAMRIALSTRFINNELTILENPINLSQPKTR 143

Query: 138 YLVTRFRAL---DLSNALIIDGCQL--------DRNFQLAARNI-PNINLLPVQGINVYD 185
            L+   +           +              + N  LA+R +  + + +PV    V D
Sbjct: 144 ILLEVLKQHKLGHEYGKALFVLNDNYFEDESLKNNNLLLASRQLGYHCSFIPVGEFQVRD 203

Query: 186 ILRCSKLVLSKSAIEALEDRF 206
            L+  KL +   A+  + ++F
Sbjct: 204 ALKFGKLFIDSEAMSLIVEKF 224


>gi|308185070|ref|YP_003929203.1| 50S ribosomal protein L4 [Helicobacter pylori SJM180]
 gi|308060990|gb|ADO02886.1| 50S ribosomal protein L4 [Helicobacter pylori SJM180]
          Length = 215

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|210135475|ref|YP_002301914.1| 50S ribosomal protein L4 [Helicobacter pylori P12]
 gi|226730672|sp|B6JNF6|RL4_HELP2 RecName: Full=50S ribosomal protein L4
 gi|210133443|gb|ACJ08434.1| 50S ribosomal protein L4 [Helicobacter pylori P12]
          Length = 215

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 12/210 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFNNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEA 201
              ++ V  +N Y +   S +V+ ++A + 
Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAFQH 207


>gi|291320505|ref|YP_003515769.1| 50S ribosomal protein L4 [Mycoplasma agalactiae]
 gi|290752840|emb|CBH40815.1| 50S ribosomal protein L4 [Mycoplasma agalactiae]
          Length = 300

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 3/191 (1%)

Query: 19  VSEDIFAL-KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSS 77
           ++  +FA  K     +   +      +R G    K R+EV   G K + QK TGRAR  S
Sbjct: 111 LNPKLFASDKIYSQAIFDTIISDRASRRQGTHDVKSRAEVRGGGKKPWRQKVTGRARAGS 170

Query: 78  KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT 136
                + GGG+AFGP P       + KKVR  A   AL+    S  ++V D    +   T
Sbjct: 171 TRSPIWVGGGRAFGPTPVRNYKLKVNKKVRFNAFVSALTLLAQSKAVVVDD-FKLESIST 229

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSK 196
           K  + +   L +     I     D     +  N+ N+  +    ++V +++    LVLS 
Sbjct: 230 KAAINKLSELGIKEQKHILIATNDEVTYKSVANLQNVICVKPTSVSVENLIWADVLVLST 289

Query: 197 SAIEALEDRFK 207
              E  E R K
Sbjct: 290 EGYENFEGRIK 300


>gi|188528106|ref|YP_001910793.1| 50S ribosomal protein L4 [Helicobacter pylori Shi470]
 gi|217033635|ref|ZP_03439063.1| hypothetical protein HP9810_899g71 [Helicobacter pylori 98-10]
 gi|308183428|ref|YP_003927555.1| 50S ribosomal protein L4 [Helicobacter pylori PeCan4]
 gi|226730674|sp|B2UV81|RL4_HELPS RecName: Full=50S ribosomal protein L4
 gi|188144346|gb|ACD48763.1| 50S ribosomal protein L4 [Helicobacter pylori Shi470]
 gi|216943981|gb|EEC23415.1| hypothetical protein HP9810_899g71 [Helicobacter pylori 98-10]
 gi|297380499|gb|ADI35386.1| 50S ribosomal protein L4 [Helicobacter pylori v225d]
 gi|308065613|gb|ADO07505.1| 50S ribosomal protein L4 [Helicobacter pylori PeCan4]
 gi|317178057|dbj|BAJ55846.1| 50S ribosomal protein L4 [Helicobacter pylori F16]
 gi|317178391|dbj|BAJ56179.1| 50S ribosomal protein L4 [Helicobacter pylori F30]
 gi|317181040|dbj|BAJ58826.1| 50S ribosomal protein L4 [Helicobacter pylori F32]
          Length = 215

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|46576793|sp|Q85FW2|RK4_CYAME RecName: Full=50S ribosomal protein L4, chloroplastic
          Length = 200

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 30  QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA 89
           + +L R LR      R   + +K R+E+   G K + QKGTGRAR  S+    +RGGG A
Sbjct: 21  KHLLHRALRTHMLSIRQWGAHTKTRAEIRGGGRKPWKQKGTGRARAGSRRSPLWRGGGVA 80

Query: 90  FGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS 149
           FGP  +     L +K    A + A     CS  I +++  + ++  ++ +      L   
Sbjct: 81  FGPRGVAMECKLNRKESRKATKIAFM--ACSKKIQIVNPPILEKPSSRTISQMLPPLPSR 138

Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             L I   + + +  L+ RNI  + L+  + I V  +L   ++ +S  AI  LE++ 
Sbjct: 139 PVLWILH-EKNPSLWLSCRNIKTLQLIQAEHIYVKPLLWAKQIWISHEAIPILENQL 194


>gi|254779860|ref|YP_003057966.1| 50S ribosomal protein L4 [Helicobacter pylori B38]
 gi|254001772|emb|CAX30003.1| 50S ribosomal subunit protein L4 [Helicobacter pylori B38]
          Length = 215

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIVDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|307637989|gb|ADN80439.1| LSU ribosomal protein L4p:L1e [Helicobacter pylori 908]
          Length = 215

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 12/210 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S     F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSIISPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEA 201
              ++ V  +N Y +   S +V+ ++A + 
Sbjct: 178 KCLVIDVSELNAYLLAAFSSVVMEEAAFQH 207


>gi|163783904|ref|ZP_02178878.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880825|gb|EDP74355.1| 50S ribosomal protein L4 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 126

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 83  FRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR 142
             GGG A GP P    +ALPKKVR  AL+  LS K    +I+++++      KTK  V  
Sbjct: 1   MVGGGVAHGPQPRDYYYALPKKVRKKALKGVLSIKLKDGEIIIVEDFSFDAPKTKNAVEV 60

Query: 143 FRALD-LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201
            + L   +  ++I   + D NF  + RN+P + L+PV+G+N YDIL   K+++ KSA E 
Sbjct: 61  LKNLGLENEKVLIVYNEKDDNFIKSFRNLPKVKLIPVEGLNTYDILNADKVLILKSAAEK 120

Query: 202 LEDRF 206
           + +R 
Sbjct: 121 INERL 125


>gi|108563688|ref|YP_628004.1| 50S ribosomal protein L4 [Helicobacter pylori HPAG1]
 gi|122386212|sp|Q1CRU2|RL4_HELPH RecName: Full=50S ribosomal protein L4
 gi|107837461|gb|ABF85330.1| ribosomal protein L4 [Helicobacter pylori HPAG1]
          Length = 215

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSVRANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCL-NMDECTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVNELNAYLLAAFSSVVMEEAAFQHV 208


>gi|30468183|ref|NP_849070.1| ribosomal protein L4 [Cyanidioschyzon merolae strain 10D]
 gi|30409283|dbj|BAC76232.1| 50S ribosomal protein L4 [Cyanidioschyzon merolae strain 10D]
          Length = 181

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 30  QGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA 89
           + +L R LR      R   + +K R+E+   G K + QKGTGRAR  S+    +RGGG A
Sbjct: 2   KHLLHRALRTHMLSIRQWGAHTKTRAEIRGGGRKPWKQKGTGRARAGSRRSPLWRGGGVA 61

Query: 90  FGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS 149
           FGP  +     L +K    A + A     CS  I +++  + ++  ++ +      L   
Sbjct: 62  FGPRGVAMECKLNRKESRKATKIAFM--ACSKKIQIVNPPILEKPSSRTISQMLPPLPSR 119

Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             L I   + + +  L+ RNI  + L+  + I V  +L   ++ +S  AI  LE++ 
Sbjct: 120 PVLWILH-EKNPSLWLSCRNIKTLQLIQAEHIYVKPLLWAKQIWISHEAIPILENQL 175


>gi|26554464|ref|NP_758398.1| 50S ribosomal protein L4 [Mycoplasma penetrans HF-2]
 gi|46577268|sp|Q8EUB4|RL4_MYCPE RecName: Full=50S ribosomal protein L4
 gi|26454474|dbj|BAC44802.1| ribosomal protein L4 [Mycoplasma penetrans HF-2]
          Length = 213

 Score =  114 bits (284), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 6/212 (2%)

Query: 1   MIELSVRNLDGEDKGVISV-SEDIF--ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57
           M  + +      +   + + ++ +F    K     +   +  +    R   + +  ++EV
Sbjct: 1   MSSVKLFKDLLGNTETVELKNKKLFISDKKINHQEIFNSVLVEEANSRQSTASTLTKAEV 60

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSD 116
              G K Y QK TGRAR  S     + GGG+AFGP P          K   LA + A++ 
Sbjct: 61  RGGGRKPYKQKHTGRARQGSIRNPHYVGGGRAFGPSPEKNYTLKQNSKAYKLAFQSAMTL 120

Query: 117 KFCSNDI-MVIDNLVSKECKTKYLVTRFRALDL-SNALIIDGCQLDRNFQLAARNIPNIN 174
           K     + ++++ +  KE  TK +    + +   +  ++      + NF  + +NI  + 
Sbjct: 121 KLNEQGLNLLVNKIDMKEPSTKTISKMLKKVSYENKKVLFVINDKNENFLKSCKNIQKVT 180

Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
                 ++V DIL     V+ + A + + + F
Sbjct: 181 SKMWNQVSVRDILNSDIAVIQEDAFDKISEVF 212


>gi|317182564|dbj|BAJ60348.1| 50S ribosomal protein L4 [Helicobacter pylori F57]
          Length = 215

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLVAAFSSVVMEEAAFQHV 208


>gi|308062603|gb|ADO04491.1| 50S ribosomal protein L4 [Helicobacter pylori Cuz20]
          Length = 215

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSTRANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|310794407|gb|EFQ29868.1| ribosomal protein L4/L1 family protein [Glomerella graminicola
           M1.001]
          Length = 326

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 25/204 (12%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ +L   + ++    R G + +K R EV  +  K++ QKGTGRAR  +K     RG
Sbjct: 95  LPLRRDLLHLAVVFEGDAARQGTASTKTRWEVRGSHRKLHPQKGTGRARAGTKQSPIRRG 154

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID------------------ 127
           GG + GP P      L +KV  +A R ALS ++    ++V +                  
Sbjct: 155 GGVSHGPKPRDFSTRLNRKVYDVAWRTALSYRYRRGQLVVCEDGMELPLPLDFTKLADAG 214

Query: 128 ---NLVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLPVQG 180
                ++ E + K+++    A +   A    L +   Q  R +            L V  
Sbjct: 215 AVGPQIAAEYRRKWMMQVLEANEWGKAHGRTLFVTDGQRPRLWDTMEAAGDQGRCLDVNE 274

Query: 181 INVYDILRCSKLVLSKSAIEALED 204
           ++V D+L   ++V+ ++A+  + +
Sbjct: 275 VDVKDLLEEGRVVIERTALREMIE 298


>gi|296272641|ref|YP_003655272.1| 50S ribosomal protein L4/L1e [Arcobacter nitrofigilis DSM 7299]
 gi|296096815|gb|ADG92765.1| ribosomal protein L4/L1e [Arcobacter nitrofigilis DSM 7299]
          Length = 195

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 3/191 (1%)

Query: 14  KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73
                + E           L   ++     +R   ++ K RSEV   G K   QKG+G A
Sbjct: 7   VKTSELPETF--KDVNSHNLYLYVKSYLAAQRANTARVKNRSEVRGGGKKPKAQKGSGGA 64

Query: 74  RHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE 133
           R  SK    F GGG+ FGP        + KK + LALR A++       + V+D++  + 
Sbjct: 65  RWGSKRSPLFVGGGQVFGPSARNYNQKINKKQKVLALRFAINTHVEKESLFVVDSVTLES 124

Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193
            KTK  V     L+  + LII    +D    LA RNI N  ++  Q +N Y       ++
Sbjct: 125 GKTKDAVAVINGLNQRDTLIIVDT-IDEKTYLAYRNIKNCYMIEKQEVNAYIAAAYHSIL 183

Query: 194 LSKSAIEALED 204
           + KS +EAL++
Sbjct: 184 VEKSVLEALKE 194


>gi|46399688|emb|CAF23137.1| putative 50S ribosomal protein L4 [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 196

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 20/195 (10%)

Query: 32  ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
           ++   +       R   + +K R+EV +T  K + QKG GRARH S    Q+RGGG+AFG
Sbjct: 1   MIKDYIVALRANARQWSASTKTRAEVKHTTKKAHPQKGQGRARHGSTVAPQYRGGGRAFG 60

Query: 92  PVPIIGVH-ALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150
           P P    H  + KK R  A+R  LS+K   N + +I++      KTK L    R  DL  
Sbjct: 61  PRPKFDQHVRINKKERKAAIRFLLSEKLKENKVWLIEDTAMDAPKTKTLAQFLRGFDLRG 120

Query: 151 ALIIDGC-------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
            ++  G                        +F  + RN+P  N +    IN YD++   +
Sbjct: 121 RVLFLGETTFTDVETEGKVQRVSISTDKHNHFVKSMRNLPRANFMLASNINGYDVMIARE 180

Query: 192 LVLSKSAIEALEDRF 206
           +VL++SA+  L    
Sbjct: 181 IVLTESALNELNQWL 195


>gi|296420041|ref|XP_002839589.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635772|emb|CAZ83780.1| unnamed protein product [Tuber melanosporum]
          Length = 285

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++    R G + +K R +V  +G K+  QKG+GRAR   K     RG
Sbjct: 99  LPTRRDILHRAITYEGDAARSGNANTKWRGDVHGSGRKIRPQKGSGRARLGDKKSPMLRG 158

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNLVSKECKTKYLVTRFR 144
           GG A GP P      LPKK+ +LA R A S ++    ++ V D L  +        +  +
Sbjct: 159 GGVAHGPKPRDFSTDLPKKMYNLAWRTAFSYRYRRGQLIVVEDALEIQANDPGLANSIIK 218

Query: 145 ALDL---SNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
                  ++  +    +   NF  A   +     +L  + ++V D+L   ++V+ + A+E
Sbjct: 219 KNGWGNENSRSLFIVNEERPNFMGAMEGLGSEGLVLTKEEVDVKDLLEMGRIVIEREALE 278

Query: 201 AL-EDR 205
              ++R
Sbjct: 279 WFRKER 284


>gi|11467718|ref|NP_050770.1| ribosomal protein L4 [Guillardia theta]
 gi|3914661|sp|O46895|RK4_GUITH RecName: Full=50S ribosomal protein L4, chloroplastic
 gi|3603043|gb|AAC35704.1| ribosomal protein L4 [Guillardia theta]
          Length = 223

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 4/179 (2%)

Query: 32  ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
           +L RVL  Q    R G + +K RSEV   G K + QKGTG AR  S +   ++GGG  FG
Sbjct: 42  LLHRVLTNQLINNRSGNACTKTRSEVEGGGKKPWKQKGTGNARAGSSNSPLWKGGGVTFG 101

Query: 92  PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV----TRFRALD 147
           P P    +   KK R LAL  AL  K  +  ++ +DNL     KT+ LV           
Sbjct: 102 PKPRTFSNKTNKKERLLALTTALYLKSNNTKVINLDNLDFTNLKTRDLVIKCSNLIENYK 161

Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
               ++              +NI N++L+   G+++  IL+   ++ +  A+  +++ F
Sbjct: 162 KDQKILFVAEPTASGLWRYVKNISNVDLIYTTGLDLKKILQAHHIIFTCKALNDVKEVF 220


>gi|15645931|ref|NP_208110.1| 50S ribosomal protein L4 [Helicobacter pylori 26695]
 gi|2500233|sp|P56032|RL4_HELPY RecName: Full=50S ribosomal protein L4
 gi|2314480|gb|AAD08357.1| ribosomal protein L4 (rpl4) [Helicobacter pylori 26695]
          Length = 215

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRY--ESINSHNLYLYVKHYLSSARANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIVDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|315587207|gb|ADU41588.1| ribosomal protein L4/L1 family protein [Helicobacter pylori 35A]
          Length = 215

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRY--ESINSHNLYLYVKHYLSSARANTAKSKNRTEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLVAAFSSVVMEEAAFQHV 208


>gi|294155416|ref|YP_003559800.1| 50S ribosomal protein L4 [Mycoplasma crocodyli MP145]
 gi|291600321|gb|ADE19817.1| 50S ribosomal protein L4 [Mycoplasma crocodyli MP145]
          Length = 360

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 2/207 (0%)

Query: 3   ELSVRNLDGEDKG-VISVSEDIFALK-PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           +++V             +  ++FA +   +  +   +      +R G  + K R++V+ T
Sbjct: 154 KVTVETSTKNLVKFDAKLPSELFASEKIYEQAIFDTILSDRASRRQGTHQVKNRAQVSGT 213

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G K + QKGTGRAR  S     F GGG+AFGP           K    A   +      +
Sbjct: 214 GKKPWRQKGTGRARTGSLRTPVFVGGGRAFGPQSEKNYSLKVNKKVRYAAFVSALTLLAN 273

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
           +  + ID+L   +  TK LV +   L +++   I     D     +A N+ N+  +    
Sbjct: 274 DKAVAIDDLKLNKISTKELVKKLTTLKINDVRHILIVTEDETLFKSAANLSNVVTVKPHS 333

Query: 181 INVYDILRCSKLVLSKSAIEALEDRFK 207
           ++V  ++    +V+SK++++ LE + K
Sbjct: 334 LSVELLIAADVMVISKNSLKVLEGKIK 360


>gi|317010001|gb|ADU80581.1| 50S ribosomal protein L4 [Helicobacter pylori India7]
          Length = 215

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSVRANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNQRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           ++ + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ADKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|198430347|ref|XP_002122114.1| PREDICTED: similar to mitochondrial ribosomal protein L4 [Ciona
           intestinalis]
          Length = 330

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 3/192 (1%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +   +F   P+  IL  V+RWQ   + +  S S+ R+E+     K + QKGTGRARH 
Sbjct: 95  VQLHPVLFDTHPRMDILHSVVRWQQEYREVDYSWSRTRAEIGRGKKKPWPQKGTGRARHG 154

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS--KE 133
           S +   +  GG + GP  P    + L        L  ALS K   ND+++I++       
Sbjct: 155 SSNSPLWVKGGISQGPRGPRASFYELNPNTLLDGLLIALSIKHIQNDLIIIESAQISQDM 214

Query: 134 CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLV 193
                 +      + S  L+    +     +  A +   +N++P+ G+NV  IL+  KLV
Sbjct: 215 PDFDEYLENRNLSEASMLLVHAENENISYLEHLAEDSKLLNIMPLYGLNVCSILKHDKLV 274

Query: 194 LSKSAIEALEDR 205
           LS+  ++ LE +
Sbjct: 275 LSRCILDELEHK 286


>gi|217032071|ref|ZP_03437571.1| hypothetical protein HPB128_16g31 [Helicobacter pylori B128]
 gi|298735657|ref|YP_003728182.1| 50S ribosomal protein L4 [Helicobacter pylori B8]
 gi|216946219|gb|EEC24827.1| hypothetical protein HPB128_16g31 [Helicobacter pylori B128]
 gi|298354846|emb|CBI65718.1| large subunit ribosomal protein L4 [Helicobacter pylori B8]
 gi|317011518|gb|ADU85265.1| 50S ribosomal protein L4 [Helicobacter pylori SouthAfrica7]
          Length = 215

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSVRANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCM-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIVDVSELNAYLLAAFSSVVMEEAAFQHV 208


>gi|302896424|ref|XP_003047092.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256728020|gb|EEU41379.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 321

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL   + ++    R G + +K R E+  +  KM  QKGTGRAR  +K     RG
Sbjct: 90  LPLRRDILHLAVVFEGDNTRQGTASTKNRWEINGSHRKMRPQKGTGRARLGTKQSPLLRG 149

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY------- 138
           GGK FGP P      L +KV   A R ALS ++   D++V ++ +     T +       
Sbjct: 150 GGKVFGPKPRDFGTGLNRKVYDKAWRTALSYRYRKGDLIVCEDGMDLALPTDFELLAGKY 209

Query: 139 ----------------LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPN-INLLPVQGI 181
                           ++        S   +            A   +P     L ++ +
Sbjct: 210 LKDGMKETYLKKYMTGMLGNLGLGRASGRTLFVTGNRREALFEAMEQVPWEGRALDLEDV 269

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
           +V D+L   K+VL +S ++ + +
Sbjct: 270 DVKDLLETGKVVLERSVLKEMIE 292


>gi|320592223|gb|EFX04662.1| 50S ribosomal protein l4 [Grosmannia clavigera kw1407]
          Length = 339

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 42/224 (18%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ +L   + ++    R G + +K R +V  +  KM  QKGTG AR  S+     RG
Sbjct: 91  LPLRRDLLHLAVVYEGDNTRQGTASTKTRYDVHGSHRKMRPQKGTGSARLGSRQSPLIRG 150

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI------------------- 126
           GGK+FGP P      L +KV   A R ALS ++   +++V                    
Sbjct: 151 GGKSFGPQPRDFGTDLNRKVYDRAWRTALSYRYRRGELVVCEDGLELPLPDAFLQAAQAG 210

Query: 127 -----------------------DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163
                                  DN  +    T   + +           I   +    F
Sbjct: 211 VLDRELEDGFVRRYVGSLLQGQADNFGTNTIGTIGTIGQAWGHASGRTTFITSDRRPNLF 270

Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
                   +   L V  ++V D+L   ++V+ ++A+  + +R +
Sbjct: 271 TSLEAAGEHGRALTVDDVDVKDLLETGRIVVERAALRYIIERHQ 314


>gi|78776488|ref|YP_392803.1| 50S ribosomal protein L4 [Sulfurimonas denitrificans DSM 1251]
 gi|109893659|sp|Q30TW3|RL4_SULDN RecName: Full=50S ribosomal protein L4
 gi|78497028|gb|ABB43568.1| LSU ribosomal protein L4P [Sulfurimonas denitrificans DSM 1251]
          Length = 204

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 4/202 (1%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +   V N   E    +++ E           L   ++      R   + +  R+EV   G
Sbjct: 1   MSAIVLNEKMEKASELALPESFSG--INPHNLYLYVKSAQAAMRANSASALTRAEVRGGG 58

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFCS 120
            K + QKG GRAR  S+    F GGGKAFGP         + KK + LAL  AL++    
Sbjct: 59  KKPWAQKGGGRARAGSRRSPVFVGGGKAFGPKNNRNYDLKVNKKQKKLALNFALNEHAQK 118

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             + ++D++     KTK   T F+AL+  + L +    LD    LA  NI +  ++    
Sbjct: 119 GSLFIVDSIEIASGKTKDAATLFKALNQRDTLFVKTV-LDEKTYLAFENIASTYVIEENE 177

Query: 181 INVYDILRCSKLVLSKSAIEAL 202
           +N Y       LV+ K+  E L
Sbjct: 178 LNAYLAANYRSLVIEKAVWENL 199


>gi|71894652|ref|YP_278760.1| 50S ribosomal protein L4 [Mycoplasma synoviae 53]
          Length = 201

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 2/180 (1%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
           +  Q  +   +  +   +R G  + K R+ V+ +G K + QKGTGRARHSS+    + GG
Sbjct: 18  EVHQQAIFDSILSERASRRQGTHQVKNRAAVSGSGKKPWKQKGTGRARHSSRRSPIWVGG 77

Query: 87  GKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA 145
           G+AFGP         + KKV+ LA R AL+       ++V D     +  TK L  + ++
Sbjct: 78  GRAFGPQSVKNYSLKVNKKVKQLAFRSALTMLVNDKAVLVED-FKMDKISTKDLSQKLKS 136

Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205
           L++     +     +     ++ N+ N+  L    +NV  ++R   L++   +++ L +R
Sbjct: 137 LNVDKLRHVILVSENATVFKSSANLKNVTTLKAHSLNVETLVRADVLLVENESMKLLTER 196


>gi|207091946|ref|ZP_03239733.1| 50S ribosomal protein L4 [Helicobacter pylori HPKX_438_AG0C1]
 gi|207108255|ref|ZP_03242417.1| 50S ribosomal protein L4 [Helicobacter pylori HPKX_438_CA4C1]
          Length = 215

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 12/211 (5%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSVELPKRYEG--INSHNLYLYVKHYLSSVRANSAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G       +  + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNKRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNLVSK--------ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
           +N + V++ +  K        +  TK     F+AL+  + L +    +D   +LA  N+ 
Sbjct: 119 ANKLFVVEKIAIKGVVEDNKRKHLTKEANQMFQALEQRDTLFVCL-NMDEYTELAFSNLK 177

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
              ++ V  +N Y +   S +V+ ++A + +
Sbjct: 178 KCLIIDVNELNAYLLAAFSSVVMEEAAFQHV 208


>gi|11465423|ref|NP_045186.1| ribosomal protein L4 [Cyanidium caldarium]
 gi|46396662|sp|Q9TLT3|RK4_CYACA RecName: Full=50S ribosomal protein L4, chloroplastic
 gi|6466326|gb|AAF12908.1|AF022186_30 unknown [Cyanidium caldarium]
          Length = 219

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 2/177 (1%)

Query: 32  ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
           ++ RV   Q+   R   + +K +S+V   G K + QKGTGRAR  S     +RGGG  FG
Sbjct: 40  VVHRVFSIQNKLSREHTASTKTKSQVRGGGKKPWKQKGTGRARAGSIRSPLWRGGGVVFG 99

Query: 92  PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL--S 149
           P P      + KK   LAL   LS+      ++     +     T+ L+   R+L++   
Sbjct: 100 PKPKNVFFKINKKEIRLALYTVLSNALPKTTVVSSLEGLPNFISTQALIKFLRSLNVSLD 159

Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           N ++I   + +    L+ RNI N+ L+    +NV  ++    LV++  A++ +   F
Sbjct: 160 NRVLIVVEKKETPLFLSCRNIKNLALIQADHLNVKSVILAQSLVVTLQALKIIYKTF 216


>gi|319955857|ref|YP_004167120.1| LSU ribosomal protein l4p [Nitratifractor salsuginis DSM 16511]
 gi|319418261|gb|ADV45371.1| LSU ribosomal protein L4P [Nitratifractor salsuginis DSM 16511]
          Length = 197

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 4/192 (2%)

Query: 14  KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRA 73
                + +    L+     L    +  +   R   +++K RS V+  G K + QKG GRA
Sbjct: 7   IKTTDLPQAF--LEVHPHNLYLYCKAYAANLRANTAQTKNRSAVSGGGKKPFAQKGGGRA 64

Query: 74  RHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           R  S     FRGGG  FGP         + KK + LAL HAL++K  +  + V+D++  +
Sbjct: 65  RQGSIRAPHFRGGGVVFGPTTDRNYTQKVNKKQKRLALMHALAEKAANEKLFVVDSVAIE 124

Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
             KTK            +  ++    +D    LA RN+    L+    +N Y       +
Sbjct: 125 SGKTKDAKAFVDGFGQRDL-LVVKEMIDEKTFLAFRNLQESYLIEENELNGYLAAAYHAI 183

Query: 193 VLSKSAIEALED 204
           V+ K+  + L  
Sbjct: 184 VMEKAVWDKLIK 195


>gi|148887418|sp|Q4A5C2|RL4_MYCS5 RecName: Full=50S ribosomal protein L4
 gi|144575209|gb|AAZ44049.2| 50S ribosomal protein L4 [Mycoplasma synoviae 53]
          Length = 229

 Score =  110 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 2/180 (1%)

Query: 27  KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGG 86
           +  Q  +   +  +   +R G  + K R+ V+ +G K + QKGTGRARHSS+    + GG
Sbjct: 46  EVHQQAIFDSILSERASRRQGTHQVKNRAAVSGSGKKPWKQKGTGRARHSSRRSPIWVGG 105

Query: 87  GKAFGPVP-IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA 145
           G+AFGP         + KKV+ LA R AL+       ++V D     +  TK L  + ++
Sbjct: 106 GRAFGPQSVKNYSLKVNKKVKQLAFRSALTMLVNDKAVLVED-FKMDKISTKDLSQKLKS 164

Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205
           L++     +     +     ++ N+ N+  L    +NV  ++R   L++   +++ L +R
Sbjct: 165 LNVDKLRHVILVSENATVFKSSANLKNVTTLKAHSLNVETLVRADVLLVENESMKLLTER 224


>gi|294944163|ref|XP_002784118.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239897152|gb|EER15914.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 497

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 8/198 (4%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG--RSEVAYTGSKMYVQKG 69
           E+ G I V   IFA   ++ IL     W       G  +     + E   +  K    K 
Sbjct: 117 EEIGSIIVPNSIFAEPIRKDILYFTYWWHRGCM-AGYQQDMQLFKWEWPGSNKKARSHKN 175

Query: 70  TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNL 129
            G++R   +       G  +    P        K+    +L+  LS KF   +I V+D+ 
Sbjct: 176 IGKSRMGRRKAPGKYDGVFSIPQRPREWRQGELKRRVWKSLKMMLSAKFAQGEITVVDSF 235

Query: 130 VSKECKTKYLVTRFR-----ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                KT+++    R       + +  + +    ++ NF+    +I  +    V+G++ Y
Sbjct: 236 NVSTHKTRHVAAHLRRLLGRHCNSALLIHVGTSDVNDNFRWGTAHIAQVRREDVEGVSTY 295

Query: 185 DILRCSKLVLSKSAIEAL 202
           ++L+  ++V+++ A+  L
Sbjct: 296 NLLKYRQIVITEQALHKL 313


>gi|114675333|ref|XP_001163944.1| PREDICTED: mitochondrial ribosomal protein L4 isoform 2 [Pan
           troglodytes]
          Length = 221

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 80/149 (53%), Gaps = 1/149 (0%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+EV   G K + QK
Sbjct: 72  FEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQK 131

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           GTGRARH S     +RGGG A GP  P    + LP KVR+L L+ AL+ K   +D+ ++D
Sbjct: 132 GTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMD 191

Query: 128 NLVSKECKTKYLVTRFRALDLSNALIIDG 156
           +L       +YL          +++++  
Sbjct: 192 SLELPTGDPQYLTELAHYRRWGDSVLLVD 220


>gi|84515209|ref|ZP_01002572.1| 50S ribosomal protein L4 [Loktanella vestfoldensis SKA53]
 gi|84511368|gb|EAQ07822.1| 50S ribosomal protein L4 [Loktanella vestfoldensis SKA53]
          Length = 109

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 61/105 (58%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           ++    NL+G   G + +++ IF LKP++ IL RV+RWQ  +   G     GRSEV+Y+ 
Sbjct: 1   MKADAINLEGAKAGSVELNDAIFGLKPRKDILHRVVRWQRNKAMAGTHDVLGRSEVSYST 60

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVR 106
            K+Y QKGTG ARH SK    FR GG   GP P    H L KK R
Sbjct: 61  KKIYRQKGTGGARHGSKGAPIFRHGGTYKGPTPRSHAHELTKKFR 105


>gi|123959698|gb|AAI28968.1| LOC100037111 protein [Xenopus laevis]
          Length = 169

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 3/148 (2%)

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCS 120
            K   QKG+GR+R  S     +RGGG A GP  P    + +P K+R L L+ AL+ K   
Sbjct: 1   KKPRQQKGSGRSRQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKLRVLGLKIALTTKLAQ 60

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNINLLPV 178
           +D+ +ID+L       +YL+         ++++I     +   N   A  N+  IN++P 
Sbjct: 61  DDLHIIDSLEISTPDPQYLIDLVNHRQWGDSVLIVDVNENLPENIFNATINLKKINVIPA 120

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
            G+NV+ +L+   +VL+ +A++ LE++ 
Sbjct: 121 TGLNVFSMLKHDTVVLTVAAVDFLEEKL 148


>gi|312218629|emb|CBX98574.1| similar to 50S ribosomal protein L4 [Leptosphaeria maculans]
          Length = 613

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++    R+G + +K R E+  +  K+  QKGTG+AR   K     RG
Sbjct: 115 LPTRRDILHRAIVYEGDNTRLGTASTKTRYEIRGSRKKVRPQKGTGKARLGDKKSPMLRG 174

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144
           GG AFGP P      LPKKV   A R ALS ++   +++++DN +  +   ++ L   F+
Sbjct: 175 GGVAFGPRPRDFGTDLPKKVYDRAWRTALSYRYRKGELIIVDNAMEIESPSSRLLEDIFK 234

Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNIN----LLPVQGINVYDILRCSKLVLSKSAIE 200
                               L  + + +++     L  + ++V D+L  S++++ + A+ 
Sbjct: 235 HQQKQLGKGRSLLVTLEQRPLLEQALADMDREEQALTWEEVDVKDLLELSRVMIEREALH 294

Query: 201 AL 202
            +
Sbjct: 295 NI 296


>gi|330927709|ref|XP_003301969.1| hypothetical protein PTT_13627 [Pyrenophora teres f. teres 0-1]
 gi|311322926|gb|EFQ89938.1| hypothetical protein PTT_13627 [Pyrenophora teres f. teres 0-1]
          Length = 565

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 25  ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFR 84
            L  ++ IL R + ++    R+G + +K R EV  +  K+  QKGTG AR   +     R
Sbjct: 81  NLPTRRDILHRAVVYEGDATRLGTASTKTRHEVHGSRRKVRPQKGTGHARLGDRMSPMLR 140

Query: 85  GGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRF 143
           GGG AFGP P      LPKKV  LA R ALS +F   +++++DN +  +   T+ L   F
Sbjct: 141 GGGVAFGPKPRDFASELPKKVYDLAFRTALSYRFRKGELIIVDNAMELESPSTRLLADIF 200

Query: 144 RALDL---SNALIIDGCQLDRNFQLAARNIPNIN-LLPVQGINVYDILRCSKLVLSKSAI 199
           R  +        ++   +     + A  ++      +    ++V  +L  S++++ + A+
Sbjct: 201 RYHEKLRGRGRSLMVTLEERPLLEQALLDMDRRKQAILWDQVDVKYLLELSRVIIERDAL 260

Query: 200 EAL 202
             +
Sbjct: 261 HNI 263


>gi|164656120|ref|XP_001729188.1| hypothetical protein MGL_3655 [Malassezia globosa CBS 7966]
 gi|159103078|gb|EDP41974.1| hypothetical protein MGL_3655 [Malassezia globosa CBS 7966]
          Length = 395

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 51/241 (21%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +S  +F   P Q  +   + +     R G + +K RS+VAY+G K+  QKGTGRAR S
Sbjct: 91  VPMSSHVFNTAPHQHAMHMAVVYYLDALRSGTASTKSRSDVAYSGKKLRPQKGTGRARLS 150

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK- 135
                  RGGG A GP P      LP+KVR LALR ALS +F    + V+ +L       
Sbjct: 151 DAGNPMLRGGGVAHGPKPRDFKTDLPRKVRELALRSALSARFREGRLHVVPSLDWYAPPM 210

Query: 136 -TKYLVTRFRALDLSNALIIDGCQLD--------------------------------RN 162
            T  L     A   +N L +   +                                  R+
Sbjct: 211 STNKLARLLSAKQWTNTLFLTAPRDPVSPVANERGSMRPSSVNLMYTDQQLTRHAQYIRH 270

Query: 163 FQLAARNIPNINLL-----------------PVQGINVYDILRCSKLVLSKSAIEALEDR 205
           F LA RN+P+++L+                     ++ Y +L   ++VL   A+E LE++
Sbjct: 271 FALAQRNLPDVDLVRLHELPPHPRPRLEHAKQPGELHAYQVLEFQRIVLDMGALEWLEEK 330

Query: 206 F 206
            
Sbjct: 331 L 331


>gi|189207547|ref|XP_001940107.1| 50S ribosomal protein L4 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187976200|gb|EDU42826.1| 50S ribosomal protein L4 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 575

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++    R+G + +K R EV  +  K+  QKGTG AR   +     RG
Sbjct: 92  LPTRRDILHRAVVYEGDATRLGTASTKTRHEVHGSRRKVRPQKGTGHARLGDRMSPMLRG 151

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144
           GG AFGP P      LPKKV  LA R ALS +F   +++++DN +  +   T+ L   FR
Sbjct: 152 GGVAFGPKPRDFSSELPKKVYDLAFRTALSYRFRKGELIIVDNAMELESPSTRLLADIFR 211

Query: 145 AL---DLSNALIIDGCQLDRNFQLAARNIPNIN-LLPVQGINVYDILRCSKLVLSKSAIE 200
                      ++   +     + A  ++      +    ++V  +L  S++++ + A++
Sbjct: 212 HHEKLWGRGRSLMVTLEERPLLEQALVDMDRRKQAILWNKVDVKYLLELSRIIIERDALQ 271

Query: 201 AL 202
            +
Sbjct: 272 NI 273


>gi|258567164|ref|XP_002584326.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237905772|gb|EEP80173.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 301

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 6/173 (3%)

Query: 35  RVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP 94
           R + ++    R G + +K RSEV  +  K+  QKGTGRAR   K     RGGG A GP P
Sbjct: 113 RAVVYEGDMTRQGTASTKWRSEVRGSRKKVRPQKGTGRARLGDKKSPMLRGGGVAHGPHP 172

Query: 95  IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKT-----KYLVTRFRALDLS 149
                 LP+K+   A R ALS ++    ++++++ +S    T     K +  R       
Sbjct: 173 RDFSTELPRKIYDKAWRTALSYRYRRGQLIIVNDNISMPKDTSVHYLKEIFDRNDWGRKF 232

Query: 150 NALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIEA 201
              ++           +   I  +  +L  + ++V D+L   +L++ K A++ 
Sbjct: 233 GRSLLITELKKEKLFESVEQIGEDARVLDREDVDVKDLLETGRLIVEKMALDR 285


>gi|315930641|gb|EFV09663.1| 50S ribosomal protein L4 (BL4) [Campylobacter jejuni subsp. jejuni
           305]
          Length = 171

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 4/174 (2%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M ++ V N   E  G + +       +     L   ++      R   + +KGRS+V+  
Sbjct: 1   MSKVVVLNDKLEKAGELDLPSKY--AEVNPHNLYLYVKSYLASLRANTAHTKGRSDVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG G AR  S   + + GG  AFGP         + KK + LAL  AL+DK  
Sbjct: 59  GKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNKKQKRLALERALADKAA 118

Query: 120 SNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI 173
              +   D+L  +  KTK      + L + +ALI+    LD    LA RN+ N 
Sbjct: 119 KGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDL-LDEKTLLAYRNLANC 171


>gi|109946760|ref|YP_663988.1| 50S ribosomal protein L4 [Helicobacter acinonychis str. Sheeba]
 gi|123362794|sp|Q17ZD7|RL4_HELAH RecName: Full=50S ribosomal protein L4
 gi|109713981|emb|CAJ98989.1| 50S ribosomal protein L4 [Helicobacter acinonychis str. Sheeba]
          Length = 215

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 10/210 (4%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           M +  V +   ++KG + + +           L   ++      R   +KSK R+EV+  
Sbjct: 1   MSKAIVLDSHLKEKGSMELPKRYEG--INSHNLYLYVKHYLSSVRANTAKSKNRAEVSGG 58

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFC 119
           G K + QKG GRAR  S +   F GGG + G          + KK + LAL +AL +K  
Sbjct: 59  GRKPWAQKGGGRARAGSITSPVFVGGGVSHGATNNRNYNLKINKKQKRLALEYALEEKAQ 118

Query: 120 SNDIMVIDNL----VSKECKTKYLVTRFRAL---DLSNALIIDGCQLDRNFQLAARNIPN 172
           +N + V++ +    V +  K K+L      +         +     +D   +LA  N+  
Sbjct: 119 ANKLFVVEKIAIKGVVEYNKRKHLAKEANKMFQALEQRDTLFVCMNMDEYTELAFSNLKK 178

Query: 173 INLLPVQGINVYDILRCSKLVLSKSAIEAL 202
             ++ V  +N Y +   S +V+ + A + +
Sbjct: 179 CLVIDVSELNAYLLAAFSSVVMEEVAFQHV 208


>gi|169625680|ref|XP_001806243.1| hypothetical protein SNOG_16116 [Phaeosphaeria nodorum SN15]
 gi|160705705|gb|EAT76488.2| hypothetical protein SNOG_16116 [Phaeosphaeria nodorum SN15]
          Length = 499

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/182 (26%), Positives = 89/182 (48%), Gaps = 5/182 (2%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++    R+G + +K R EV  +  K+  QKG+GRAR   +     RG
Sbjct: 36  LPTRRDILHRAVVYEGDSTRLGTASTKTRYEVHGSRRKIRPQKGSGRARLGDRKSPMLRG 95

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFR 144
           GG AFGP P      LPKKV  LA R ALS +F   +++++DN +  +    + L   F+
Sbjct: 96  GGVAFGPKPRDFATELPKKVYDLAWRTALSYRFRKGELIIVDNAIEIESPSPRLLGDIFK 155

Query: 145 ALDLSN---ALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKSAIE 200
             +        ++   +     + A   +      L  + ++V ++L  S++++ + A+ 
Sbjct: 156 YHEKIQGRGRSLMVTLEERPLLEDALEQMGRGGQALTWEEVDVKNLLELSRVMIERDALH 215

Query: 201 AL 202
            +
Sbjct: 216 NI 217


>gi|77407531|ref|ZP_00784358.1| ribosomal protein L4 [Streptococcus agalactiae H36B]
 gi|77173859|gb|EAO76901.1| ribosomal protein L4 [Streptococcus agalactiae H36B]
          Length = 136

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 66/126 (52%)

Query: 81  SQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV 140
           +Q+RGGG  FGP P    + LP+KVR LAL+   S K   +  + ++ L     KT    
Sbjct: 10  TQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEXLSFAAPKTAEFA 69

Query: 141 TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           +   AL + + +++   + +    L+ARN+PN+ +      +V DI+   KL+++K AI 
Sbjct: 70  SVLSALSIDSKVLVILEEGNEFAALSARNLPNVTVATATTASVLDIVNADKLLVTKEAIS 129

Query: 201 ALEDRF 206
            +E   
Sbjct: 130 TIEGVL 135


>gi|171692683|ref|XP_001911266.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946290|emb|CAP73091.1| unnamed protein product [Podospora anserina S mat+]
          Length = 326

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 25/205 (12%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL   + ++    R G +++K R EVA +  K+  QKG+GRAR  +K     RG
Sbjct: 87  LPLRRDILHLAVVYEGDNTRQGTAQAKTRWEVAGSHRKVRPQKGSGRARVGNKQSPLQRG 146

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID------------------ 127
           GGK+ GP        L +KV  LA R ALS ++   +++V +                  
Sbjct: 147 GGKSHGPRNRDFGTKLNRKVYDLAWRTALSYRYRRGELIVTEDGLDLPLPEDFLQQAQDG 206

Query: 128 ---NLVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDRNFQLAARNIPNINLLPVQG 180
                +      KY+     A+    A      I G +    F        N   L ++ 
Sbjct: 207 LLTRELEDAFIEKYVGEMLGAMQWGKAHGRTTFITGEERMNLFTAMGVAGENGRALELED 266

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           ++V D+L   ++V+  S ++ +  R
Sbjct: 267 VDVKDLLETGRIVVESSVLKEMIKR 291


>gi|159477929|ref|XP_001697061.1| mitochondrial ribosomal protein L4 [Chlamydomonas reinhardtii]
 gi|158274973|gb|EDP00753.1| mitochondrial ribosomal protein L4 [Chlamydomonas reinhardtii]
          Length = 124

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/123 (34%), Positives = 64/123 (52%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMY 65
           + +LD    G+  +    F +  +  IL RV+R+   + + G  K+K R+EV+  G K +
Sbjct: 1   IYSLDERPLGLAPLPGAAFNVPVRIDILHRVVRYWRAKWQQGTHKAKSRAEVSGGGKKPW 60

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QK TGRAR  S     ++GGG +  P P    HALP+  R L +R ALS K       V
Sbjct: 61  NQKKTGRARQGSIRSPLWKGGGVSHAPRPRSHAHALPRSTRLLGMRCALSAKINEGRFFV 120

Query: 126 IDN 128
           +D+
Sbjct: 121 VDD 123


>gi|116199351|ref|XP_001225487.1| hypothetical protein CHGG_07831 [Chaetomium globosum CBS 148.51]
 gi|88179110|gb|EAQ86578.1| hypothetical protein CHGG_07831 [Chaetomium globosum CBS 148.51]
          Length = 319

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 26/205 (12%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL   + ++  + R G + SK R EV  +  K+  QKG+GRAR   K     +G
Sbjct: 89  LPLRRDILHLAVVYEGDKTRQGTASSKTRFEVHGSHRKLRPQKGSGRARVGIKQSPLMKG 148

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID------------------ 127
           GGK FGP P      L +KV  LA R ALS ++   +++V +                  
Sbjct: 149 GGKTFGPKPRDFSTKLNRKVYDLAWRTALSYRYRRGELIVTEDGLELPLPEEFLQLAESG 208

Query: 128 ---NLVSKECKTKY----LVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
                +     +KY    +       D      I G +    F        N   L ++ 
Sbjct: 209 AMGRELEDSFISKYVGELMTALQWDKDNGRTTFITGDRRPNLFTGLDIAGENGRALELED 268

Query: 181 INVYDILRCSKLVLSKSAI-EALED 204
           ++V D+L   ++V+ ++A+ E +++
Sbjct: 269 VDVKDLLETGRIVIERTALREMIKE 293


>gi|218659827|ref|ZP_03515757.1| 50S ribosomal protein L4 [Rhizobium etli IE4771]
          Length = 117

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/112 (60%), Positives = 87/112 (77%)

Query: 96  IGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
                 PKKVR+L +R ALS K  ++D++VIDNLV+ E KTK L + F  L L+NAL I 
Sbjct: 6   QPRARPPKKVRALGIRDALSAKIKADDVIVIDNLVAAEAKTKALASAFETLGLTNALFIG 65

Query: 156 GCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           G +LD NF+LAA+NIPNI++LP+QGINVYDI+R  KLVLSK+A+EALE+RFK
Sbjct: 66  GAELDGNFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERFK 117


>gi|256370781|ref|YP_003108606.1| 50S ribosomal protein L4 [Candidatus Sulcia muelleri SMDSEM]
 gi|256009573|gb|ACU52933.1| 50S ribosomal subunit protein L4 [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 204

 Score =  106 bits (264), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 3/203 (1%)

Query: 2   IELSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           ++L++ N +G + G  + +  D    K    I+   ++     +R G +KSK RSE+  +
Sbjct: 1   MKLNILNKNGFETGRFLKIKNDSLKEKKN-HIIYLEIKRYFSAQRQGTNKSKERSEITGS 59

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K+  QKG+G AR  +     FR GG+ FGP P      L K  + LA +  +  K   
Sbjct: 60  TKKIQRQKGSGNARKGNIKNPLFRSGGRIFGPKPKKFNFKLNKLFKVLAKKLLIYFKIKK 119

Query: 121 NDI-MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
           N + ++ D  + K+                  L+I   + D+NF +A+RN+  +N++ ++
Sbjct: 120 NKVKILEDFFLKKKKTFLIKKLITTLNLEKKKLLIIINKKDKNFFIASRNLKLLNVISIE 179

Query: 180 GINVYDILRCSKLVLSKSAIEAL 202
            +N++ +     L+  +S  + L
Sbjct: 180 ELNIFYLANSDYLIFFESVFKKL 202


>gi|320533935|ref|ZP_08034505.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320133855|gb|EFW26233.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 141

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 2/133 (1%)

Query: 71  GRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           GRAR  S    QF GGG   GP P       PKK+++ ALR ALSD+  +  + VI   V
Sbjct: 1   GRARQGSTRAPQFVGGGTVHGPQPRDYTQRTPKKMKAAALRSALSDRARNGRVHVITEFV 60

Query: 131 SKE-CKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
           +     TK  +   R L      ++   + D   +L+ RN P  ++L    +N YD+L+ 
Sbjct: 61  TTTVPSTKNALVALRNLTD-RKALVIVDRQDDLSRLSLRNAPEAHVLWADQLNTYDVLKS 119

Query: 190 SKLVLSKSAIEAL 202
             +V + S ++A 
Sbjct: 120 DDVVFTASGLDAF 132


>gi|325973272|ref|YP_004250336.1| 50S ribosomal protein L4 [Mycoplasma suis str. Illinois]
 gi|325989707|ref|YP_004249406.1| 50S ribosomal protein L4 [Mycoplasma suis KI3806]
 gi|323574792|emb|CBZ40452.1| 50S ribosomal protein L4 [Mycoplasma suis]
 gi|323651874|gb|ADX97956.1| 50S ribosomal protein L4 [Mycoplasma suis str. Illinois]
          Length = 223

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 9/213 (4%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALK---PQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           E+ +  LDGE +  I  S+ I   K        + +    +   KR+    +K + EV+ 
Sbjct: 6   EIKIYTLDGEVESSIKFSDFIPDWKSDFYYSDAIFQTTVSEQQSKRLARPHTKTKGEVSG 65

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL-ALRHALSDKF 118
            G K Y QK TGRAR  S+   QF GGG AFGP   +  +    K     A+R + +   
Sbjct: 66  GGKKPYRQKHTGRARQGSRRNPQFVGGGVAFGPRKEVNHYKKVNKRIRALAIRSSWTLAL 125

Query: 119 CSNDIMVIDNLVSKECK---TKYLVTRFRALDLSNALIID--GCQLDRNFQLAARNIPNI 173
             N +  I +   +      TK   +    L       +      L  +  L ARN+PN+
Sbjct: 126 NENRVFGISSKKLENFPANRTKIFYSFLGKLGFQGEKRVYLIVKSLSEDIVLGARNLPNL 185

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            ++ V  I ++ +L   +++LS    E L+  +
Sbjct: 186 KVVKVNSITIFSLLNARRIILSNEGFEWLKTNY 218


>gi|115938906|ref|XP_001186449.1| PREDICTED: similar to mitochondrial ribosomal protein L4 (L4mt)
           [Strongylocentrotus purpuratus]
          Length = 560

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++ +L+    G++ +   +FA  P+  IL R + WQ   KRI  +K+K R+EV   G K 
Sbjct: 97  TINSLEDNKLGLLDLHPHVFATFPRLDILHRNVLWQRNYKRISMAKAKSRAEVRGGGKKP 156

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKGTGRARH S     + GGGKA GP  P    + LP+K+R+  LR AL+ K+  +D+
Sbjct: 157 WRQKGTGRARHGSTRSPIWIGGGKALGPRGPRSYWYVLPEKIRAHGLRVALTVKYTQDDL 216

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
            ++D+L        YL    +      +++   
Sbjct: 217 HIVDSLDIPSADPGYLQDLCKERYWGESVLFVD 249


>gi|115712808|ref|XP_792959.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 486

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKM 64
           ++ +L+    G++ +   +FA  P+  IL R + WQ   KRI  +K+K R+EV   G K 
Sbjct: 23  TINSLEDNKLGLLDLHPHVFATFPRLDILHRNVLWQRNYKRISMAKAKSRAEVRGGGKKP 82

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI 123
           + QKGTGRARH S     + GGGKA GP  P    + LP+K+R+  LR AL+ K+  +D+
Sbjct: 83  WRQKGTGRARHGSTRSPIWIGGGKALGPRGPRSYWYVLPEKIRAHGLRVALTVKYTQDDL 142

Query: 124 MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
            ++D+L        YL    +      +++   
Sbjct: 143 HIVDSLDIPSADPGYLQDLCKERYWGESVLFVD 175


>gi|213646336|ref|ZP_03376389.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 117

 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSN 121
            K + QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQD 116

Query: 122 D 122
            
Sbjct: 117 R 117


>gi|307069691|ref|YP_003878168.1| putative 50S ribosomal subunit protein L4 [Candidatus Zinderia
           insecticola CARI]
 gi|306482951|gb|ADM89822.1| putative 50S ribosomal subunit protein L4 [Candidatus Zinderia
           insecticola CARI]
          Length = 208

 Score =  105 bits (261), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 1/189 (0%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           V  +IF       ++ +V+       R   SK K RSEV +   K++ QKGTGRAR  + 
Sbjct: 18  VLNNIFNYPYNLSLIHQVIISYLSNNRKIISKQKNRSEVKHNKKKLWKQKGTGRARVGNI 77

Query: 79  SVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTK 137
           S   +RGGGK F           + KK+  +++   LS     N +++++N +    KTK
Sbjct: 78  SSPLWRGGGKIFPNTSNENYRKKINKKMYKISISSILSQLNRENRLLILNNFLIDNFKTK 137

Query: 138 YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKS 197
            ++ +   +    + +    +L+ N   + +N+ NI  + +  IN   ++   K++L ++
Sbjct: 138 NILKKINKITYKKSSLFILDKLNFNILYSFKNLYNIFFIYINKINPISLINFQKIILMEN 197

Query: 198 AIEALEDRF 206
            +  ++   
Sbjct: 198 TLYKIQKWL 206


>gi|85081598|ref|XP_956751.1| 60S ribosomal protein L4, mitochondrial precursor [Neurospora
           crassa OR74A]
 gi|28917827|gb|EAA27515.1| 60S ribosomal protein L4, mitochondrial precursor [Neurospora
           crassa OR74A]
 gi|38566840|emb|CAE76146.1| related to ribosomal protein YML6, mitochondrial [Neurospora
           crassa]
          Length = 349

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL   + ++    R G + +K R EV  +  KM  QKGTG AR  ++     +G
Sbjct: 114 LPLRRDILHLAVIYEGDSTRRGMASTKTRYEVHGSHKKMSPQKGTGNARRGTRQSPLMKG 173

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLV----- 140
           GGK FGP P      L KKV  LA R ALS ++   +++V ++           +     
Sbjct: 174 GGKTFGPKPRDFSTKLNKKVYDLAWRTALSYRYKRGELIVTEDG-LDLPLPNDFLWLAGG 232

Query: 141 ----------TRFRALDLSNALIIDGCQLDRNFQLAARNIPNI-----------NLLPVQ 179
                        + +      +  G +  R   +     PN+             L + 
Sbjct: 233 GKLSRELEDGYVRKWVHEFMTSLNWGKEAGRTTFITGDKRPNLFTGFELAGAEGRALELW 292

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            ++V D+L   ++V+ +SA++ + +
Sbjct: 293 DVDVKDLLETGRIVIERSALKEMIE 317


>gi|283794898|ref|YP_003359251.1| ribosomal protein L4 [Cryptomonas paramecium]
 gi|253981870|gb|ACT46787.1| ribosomal protein L4 [Cryptomonas paramecium]
          Length = 214

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 4/190 (2%)

Query: 16  VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARH 75
            I+++      +  +    R+L  Q+  +R   + SK R+EV   G K + QKGTGRAR 
Sbjct: 23  TITLNLKT-CAEVSKFFFHRILTIQNKNQRCKTACSKTRAEVRGGGRKPWKQKGTGRARA 81

Query: 76  SSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
            S     ++GGG  FGP P +    +  K R LA+   L        I+        + +
Sbjct: 82  GSSVSPLWKGGGVVFGPKPTVYNKKINFKERQLAIFTGLYACSYKIVIVRNFVSSIAQPR 141

Query: 136 TKYLVTRFRALDL---SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
           TK  +    + D    S  ++I   +       + RN+  I +   + + + DI     +
Sbjct: 142 TKAFLGLLSSFDPSLLSKRILILVPKATETLYSSCRNVEKITIGSRKTLTLRDIFLADSI 201

Query: 193 VLSKSAIEAL 202
           ++++ A+   
Sbjct: 202 LIAEEALPEF 211


>gi|297613186|ref|NP_001066789.2| Os12g0488600 [Oryza sativa Japonica Group]
 gi|255670313|dbj|BAF29808.2| Os12g0488600 [Oryza sativa Japonica Group]
          Length = 346

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 1/131 (0%)

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K Y QKGTGRARH +    QFRGG    GP P      L KKVR L L+ ALS +     
Sbjct: 173 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGK 232

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNAL-IIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++V ++L     KTK +V+    ++ +  + ++DG  +D+  +LA +N+  +N+LP  G+
Sbjct: 233 LLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSIGL 292

Query: 182 NVYDILRCSKL 192
           NVY IL+   L
Sbjct: 293 NVYSILQHDTL 303


>gi|7670462|dbj|BAA95082.1| unnamed protein product [Mus musculus]
          Length = 184

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSD 116
           +  G K + QKG+GRARH S     + GGG A GP  P    + LP KVR+L L+ AL+ 
Sbjct: 11  SGGGRKPWQQKGSGRARHGSIRSPLWLGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTV 70

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG---CQLDRNFQLAARNIPNI 173
           K   +D+ ++D+L       +YL    +     +++++      ++ +N   A   + + 
Sbjct: 71  KLMQDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSF 130

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           NL+P  G+NVY +L+   LVL+  ++  LED+ 
Sbjct: 131 NLIPAVGLNVYSMLKHQTLVLTLPSVALLEDKL 163


>gi|226295376|gb|EEH50796.1| 50S ribosomal protein L4 [Paracoccidioides brasiliensis Pb18]
          Length = 272

 Score =  102 bits (253), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 20/176 (11%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL R + ++  + R G + +K R +V  +  K+  QKGTGRAR   K     RG
Sbjct: 101 LPLRRDILHRAIVYEGDKTRQGTASTKWRDDVHGSRRKIRPQKGTGRARLGDKKSPMLRG 160

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA 145
           GG A GP P      LPKK+  LA R             + D     +    +  +    
Sbjct: 161 GGVAHGPHPRDFSTKLPKKIYDLAWRTRW----------LEDVFEKNQWGKSFGRSLLIT 210

Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201
                 L +   ++ R          +  +L  + ++V D+L  ++L++ K A++ 
Sbjct: 211 EVKKERLFMGVKEISR----------HGRVLDREDVDVKDLLETARLIVEKQALDR 256


>gi|219117581|ref|XP_002179583.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408636|gb|EEC48569.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 184

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 85/179 (47%), Gaps = 20/179 (11%)

Query: 49  SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVR 106
           +K+K  SEV+ +G K+  QKGTG AR        FRGG KA GP  +       L KKVR
Sbjct: 4   AKTKTISEVSGSGRKIRNQKGTGMARAGHSRPPHFRGGAKAHGPKNVTDYGNTKLNKKVR 63

Query: 107 SLALRHALSDKFCSNDIMVIDN-LVSKECKTKYLVTRFRALDLSNA----LIIDGCQLDR 161
            LAL HALS K    +++++++       KTK L       D+        +I    +  
Sbjct: 64  KLALVHALSQKLLEGNLIILNSLKELPSHKTKELTRFLEPWDIGGKDGATALILDAYISE 123

Query: 162 -------------NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
                        N  +A+ NI  I +       VYDIL+  KLVL+ +A+E LEDR +
Sbjct: 124 EEGQPQSYKGVPMNLWVASSNIYRIKVGNHLAACVYDILKHEKLVLTLAALEKLEDRLR 182


>gi|256071067|ref|XP_002571863.1| 50S ribosomal protein L4 [Schistosoma mansoni]
 gi|238657011|emb|CAZ28093.1| 50S ribosomal protein L4, putative [Schistosoma mansoni]
          Length = 409

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 58/249 (23%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS-KMYVQKGTGRA 73
           G+I +  DIFA+ P+  ++ + L WQ+  + I       R+E++Y    K + QKGTG+A
Sbjct: 101 GMIDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCITTRAELSYGTRKKPWPQKGTGKA 160

Query: 74  RHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK 132
           RH ++    +  GG+  GP  P    + L    R   L   LS K      +V++     
Sbjct: 161 RHGNRRTHIWLTGGQCKGPRGPESFYYLLSYGERLAGLLSMLSIKHAQVIFVVVEKNNEL 220

Query: 133 ECKTKYLVTRFRAL------------------DLSNALIIDGCQLDRNFQLAARNIP--- 171
                  +   R                        +  ID  + D     +  N+    
Sbjct: 221 SAIYIRQLADLRCWGPSILFVDAHSPASQLAVPCPGSENIDNNETDNMNF-SYDNLAISL 279

Query: 172 ----------------------------------NINLLPVQGINVYDILRCSKLVLSKS 197
                                              + L+PV  +NV+ ++    LV+S  
Sbjct: 280 ACGSYENHVKSEISPESSAFKLDSIAPRATHPGRGLTLMPVHSLNVWSMVHHDTLVISLK 339

Query: 198 AIEALEDRF 206
           A+E LE+R 
Sbjct: 340 ALEMLEERL 348


>gi|323649930|gb|ADX97051.1| mitochondrial 39S ribosomal protein l4 [Perca flavescens]
          Length = 209

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/128 (39%), Positives = 67/128 (52%), Gaps = 1/128 (0%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           D E  G+  +  D+FA+ P+  IL  V  WQ   KRI  + +K RSEV   G K + QKG
Sbjct: 82  DSEPLGLAQLHPDVFAVHPRLDILHEVETWQRNYKRISHASTKIRSEVRGGGRKPWKQKG 141

Query: 70  TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN 128
           +GRARH S     ++GGG A GP  P    + LP KVR   L+ ALS K     + ++D+
Sbjct: 142 SGRARHGSIRSPLWKGGGVANGPRGPTSYFYMLPMKVRVQGLKVALSSKMAQQYLHIVDS 201

Query: 129 LVSKECKT 136
           L       
Sbjct: 202 LNIPSPDP 209


>gi|324556508|gb|ADY49811.1| 50S ribosomal protein L4 [Ascaris suum]
          Length = 96

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 49/94 (52%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           +    I++++D+FA+ P +  L   +  Q    R G    K RS V+  G K + QKGTG
Sbjct: 3   KKVDSITLNDDVFAITPNEQALFDAVMLQRANVRQGTHSVKNRSAVSGGGRKPWRQKGTG 62

Query: 72  RARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKV 105
           RAR  +    Q+RGGG  FGP P      + KKV
Sbjct: 63  RARQGTIRAPQWRGGGVVFGPTPRKYTLKMNKKV 96


>gi|326926873|ref|XP_003209621.1| PREDICTED: 60S ribosomal protein L4-like [Meleagris gallopavo]
          Length = 325

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  ++  V        R        +  +  +E 
Sbjct: 55  ISVYSEKGEASGKNVTLP-AVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTSAES 113

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 114 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVTQKRYAICS 173

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      +I    +V+++ V    KTK  V   + L   N +      
Sbjct: 174 ALAASALPALVMSKGHRIEEIPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYAS 233

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 234 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIRAFRNIPGITLLDVNKLNLLRLAPGGHV 293

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 294 GRFCIWTESAFRKLDDLY 311


>gi|327285147|ref|XP_003227296.1| PREDICTED: 60S ribosomal protein L4-like [Anolis carolinensis]
          Length = 311

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 41  ISVYSEKGEVSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNSRQPYAVSELAGHQTSAESW 100

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 101 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNITQKRYAICSA 160

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 161 LAASALPALVMSKGHRIEEIPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 220

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I +L V  +N+  +     + 
Sbjct: 221 RMRAGKGKMRNRRRIQRKGPCIIFNEDNGIIKAFRNIPGITVLNVNKLNILRLAPGGHVG 280

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 281 RFCIWTESAFRKLDELY 297


>gi|116755015|ref|YP_844133.1| 50S ribosomal protein L4P [Methanosaeta thermophila PT]
 gi|121694875|sp|A0B9W9|RL4_METTP RecName: Full=50S ribosomal protein L4P
 gi|116666466|gb|ABK15493.1| LSU ribosomal protein L4P [Methanosaeta thermophila PT]
          Length = 251

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 80/258 (31%), Gaps = 60/258 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC---------SKSK 52
           +   + ++ G   G I +   IF  + +  ++ R +      +             + ++
Sbjct: 1   MNAKIIDISGNPVGEIVLP-AIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSAR 59

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
                        +  G   A           GG  +  PVP  +    + +K R  A+R
Sbjct: 60  SWGPGHGVSRVPRIVTGRRAAAVPMAR-----GGRASHPPVPSKVLSEKINEKERIKAIR 114

Query: 112 HALSDKFCSNDI------------MVIDNLVSKECKTKYLVTRFRALDLS---------- 149
            A++     + +            +V+   +    KT  L     A  L           
Sbjct: 115 SAVAATAKPDIVAARGHLFSGELPIVVRGEIESISKTSELRRFLMAAGLWDDVMRAKNGR 174

Query: 150 ----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RC 189
                              I+     D     AARN+P ++ +    +N  ++L      
Sbjct: 175 KVRAGKGKIRGRRFRQPRSILIVAAADNGIGRAARNLPGVDFVTADRLNA-ELLAPGTHA 233

Query: 190 SKL-VLSKSAIEALEDRF 206
            +L V S+ +++ LE+R 
Sbjct: 234 GRLTVWSEPSLKVLEERL 251


>gi|74000602|ref|XP_866420.1| PREDICTED: similar to 60S ribosomal protein L4 (L1) isoform 7
           [Canis familiaris]
          Length = 295

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 247 GRFCIWTESAFRKLDDLY 264


>gi|73667661|ref|YP_303676.1| 50S ribosomal protein L4P [Methanosarcina barkeri str. Fusaro]
 gi|109893602|sp|Q46G96|RL4_METBF RecName: Full=50S ribosomal protein L4P
 gi|72394823|gb|AAZ69096.1| LSU ribosomal protein L4P [Methanosarcina barkeri str. Fusaro]
          Length = 253

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 84/256 (32%), Gaps = 52/256 (20%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRS 55
           M      +L G+    I + + +F +  +  ++ + +      +         +  +  +
Sbjct: 1   MATAKTIDLTGKVVREIELPD-VFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSA 59

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHAL 114
               +G           +  ++  V   RGG +A  P P       +  K R  A+R A+
Sbjct: 60  RGWGSGRGTSHVPRLVNSSRAA-RVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAI 118

Query: 115 S------------DKFCSNDIMVIDNLVSKECKTKYLVTRFR------------------ 144
           +              F +   +V +N +    KTK ++   +                  
Sbjct: 119 AATRDPTLVSLRGHIFEAELPIVTENALEDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIR 178

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSKL 192
                           ++           AARN+  +++  V  +N  ++L       +L
Sbjct: 179 AGRGKLRGRKYKHKKSVLIVAGESAPILKAARNLSGVDVATVDSLNA-ELLAPGTHAGRL 237

Query: 193 -VLSKSAIEALEDRFK 207
            + ++SA+E LE  F+
Sbjct: 238 TIWTESAVEKLEGAFQ 253


>gi|302308292|ref|NP_985172.2| AER316Cp [Ashbya gossypii ATCC 10895]
 gi|299789385|gb|AAS52996.2| AER316Cp [Ashbya gossypii ATCC 10895]
          Length = 269

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 21/212 (9%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E    + V   +  +  ++ IL R + +++  KR+G S    RSE  Y+  K+  QKGTG
Sbjct: 52  EPVSFMPVPMSVLGVPLRRDILWRAVVYENDNKRVGSSNPPSRSENGYSRRKLLPQKGTG 111

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSD-------------- 116
           RAR    +     GGG+A     P      LP+K+ S A   ALS               
Sbjct: 112 RARVGDANSPTRHGGGRAHARSAPNDYTTKLPRKIYSQAFSIALSHQYRQGNMYAIGLEE 171

Query: 117 --KFCSNDIMVIDNLVSKECKTKY--LVTRFRALDLSNALIIDGCQLDRNFQLAA--RNI 170
             K    D+ V+D L S+          T      L N  ++      R   +A      
Sbjct: 172 SGKLSEGDLPVLDLLPSETNPHPDAVFETFLNEFGLQNKRLLFIIDEPRPSLMAFTESFK 231

Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
             ++++  + ++V DILR  ++ +   A++ L
Sbjct: 232 DKVDIVQKEFVDVNDILRAHRIFIESEALKYL 263


>gi|289619254|emb|CBI54221.1| unnamed protein product [Sordaria macrospora]
          Length = 349

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 27/205 (13%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ IL   + ++    R+G + SK R EV  +  KM  QKGTG AR  +K     +G
Sbjct: 114 LPLRRDILHLAVIYEGDSTRLGMASSKTRYEVHGSHKKMIAQKGTGHARRGTKQSPLQKG 173

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYL------ 139
           GGK+FGP P      L KKV  LA R ALS ++   +++V ++                 
Sbjct: 174 GGKSFGPKPRDFSTKLNKKVYDLAWRTALSYRYKRGELIVTEDG-LDLPLPDDFLWLAGG 232

Query: 140 ---------VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNI-----------NLLPVQ 179
                        + +      +  G +  R   +     PN+             L + 
Sbjct: 233 GKLSRELEDAYVRKWVREFMTGLNWGKEAGRTTFITGDKRPNLFTGFELAGAEGRALELW 292

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            ++V D+L   ++V+ +SA++ +  
Sbjct: 293 DVDVKDLLETGRIVIERSALKEMIK 317


>gi|50303315|ref|XP_451599.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640731|emb|CAH01992.1| KLLA0B01540p [Kluyveromyces lactis]
          Length = 262

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 23/207 (11%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           V   +F    ++ +L R + +++  KR+G S   GRS+V Y+  K+  QKG+G AR    
Sbjct: 50  VPTSVFDAPLRRDLLWRAVVYENDSKRVGSSNPPGRSDVGYSRRKILPQKGSGMARAGDA 109

Query: 79  SVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI----------- 126
           +      GG+A     P     ALPKKV SLA  +ALS ++ + ++ VI           
Sbjct: 110 NSPIRHNGGRALARTAPNDYTTALPKKVYSLAFNNALSHQYRNGNVFVIGSGDGISETSQ 169

Query: 127 -DNLVSKECKTKY--------LVTRFRALDLSNALIIDGCQLDRNFQLAA--RNIPNINL 175
            D    +                   +  +L N  ++      R    +   R    +N+
Sbjct: 170 ADLNELEILPIGEGSEDGDIVFEKFLKHYELQNKKLLFVINEPRPGLFSFTERFQDKVNI 229

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEAL 202
           +  + ++V D+L+  ++ +   A+E L
Sbjct: 230 VQKEFVDVNDLLKAHRIFIELEALEYL 256


>gi|300120113|emb|CBK19667.2| unnamed protein product [Blastocystis hominis]
          Length = 162

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 11  GEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           GE     ++++  +F +  ++ IL RV+ WQ  ++R G    K  SEV+ +  K + QKG
Sbjct: 4   GEQTSDLVTLNNRVFGMPLREDILQRVVVWQLAKRRQGTHCVKTLSEVSGSNRKPFPQKG 63

Query: 70  TGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104
           TGRAR   K   Q RGG K  GP P    + LP K
Sbjct: 64  TGRARQGQKRAPQMRGGYKPMGPRPRDYDYPLPMK 98


>gi|331227810|ref|XP_003326573.1| 60S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309305563|gb|EFP82154.1| 60S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 456

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 57/258 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58
           ++VR+  G+    I +   +F    +  ++  + +  +  KR   + S     +  +E  
Sbjct: 87  VNVRSTSGQSSSTIPLP-AVFTAPIRNDVVQDIHKNLAKNKRQAYAVSSKAGEQTSAESW 145

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G G  R    +      GG+ F P             K R  A+  A
Sbjct: 146 GTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKIWRKWHVKTNLKQRRYAIVSA 205

Query: 114 LS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           ++               +K     ++V D + S   KTK  V   + L   + ++     
Sbjct: 206 IAATAVPSLVLARGHRIEKIAEVPLVVADEVES-ISKTKEAVAILKTLKAHSDVVKVSNS 264

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D+    A RNIP + L+ V  +N+  +     +
Sbjct: 265 RKTRAGKGKMRGRRYRQRRGPLVIYNEDKGIVRAFRNIPGVELVCVHRLNLLQLAPGGHI 324

Query: 193 ----VLSKSAIEALEDRF 206
               + ++ A   L++ +
Sbjct: 325 GRFCIWTQGAFAQLDELY 342


>gi|114657762|ref|XP_001174724.1| PREDICTED: similar to ribosomal protein isoform 1 [Pan troglodytes]
          Length = 477

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 58  ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 116

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 117 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 176

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 177 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 236

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 237 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 296

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L++ +
Sbjct: 297 GRFCIWTESAFRKLDELY 314


>gi|226329481|ref|ZP_03804999.1| hypothetical protein PROPEN_03390 [Proteus penneri ATCC 35198]
 gi|225202667|gb|EEG85021.1| hypothetical protein PROPEN_03390 [Proteus penneri ATCC 35198]
          Length = 105

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++  G     ++VSE  F     + ++ +V+   +   R G    K R+EV+ +G
Sbjct: 1   MELVMKDAQGA----LTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVSGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKK 104
            K + QKGTGRAR  S     +R GG +F   P      + KK
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVSFAAKPQDHSQKVNKK 99


>gi|326511094|dbj|BAJ91894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 362

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 88/259 (33%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V + +GE  G +++   +F    +  ++ +V +  +  KR        +  +  +E
Sbjct: 5   PTVTVFSGNGEASGSLALP-SVFTAPIRLDVVQQVHKSMNKNKRQAYGVFNKAGHQHSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G+G AR    +      GG+ F P          + +  R  A+ 
Sbjct: 64  SWGTGRAVARIPRIAGSGTARAGQGAFGNMCRGGRMFAPTKTFRKWHVKINQNQRRYAVA 123

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL+     + +              +V+ +      KTK  V   + +   + ++    
Sbjct: 124 SALAASALPSLVLARGHRVEQIQEVPLVLADSAESLKKTKEAVELLKTVKAYSDIVKVSN 183

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                     + D     A RNIP +   PV  +N+  +     
Sbjct: 184 SRKIRAGKGKMRNRRHRQRRGPLVVYKNDEGIVKALRNIPGVETCPVTALNLLQLAPGGH 243

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ ++ A  AL++ +
Sbjct: 244 VGRFVIWTEGAFGALDEVY 262


>gi|119598180|gb|EAW77774.1| ribosomal protein L4, isoform CRA_b [Homo sapiens]
          Length = 477

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 58  ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 116

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 117 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 176

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 177 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 236

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 237 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 296

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L++ +
Sbjct: 297 GRFCIWTESAFRKLDELY 314


>gi|326504742|dbj|BAK06662.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 362

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 86/259 (33%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V    GE  G +++   +F    +  ++ +V +  +  KR        +  +  +E
Sbjct: 5   PTVTVYAASGEASGSLALP-SVFTAPIRLDVVQQVHKSMNKNKRQAYGVFENAGHQHSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G+G AR    +      GG+ F P          + +  R  A+ 
Sbjct: 64  SWGTGRAVARIPRIAGSGTARAGQGAFGNMCRGGRMFAPTKTFRKWHVKINQNQRRYAVA 123

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL+     + +              +V+ +      KTK  V   + +   + ++    
Sbjct: 124 SALAASALPSLVLARGHRVEQIQEVPLVLADSAESLKKTKEAVELLKTVKAYSDIVKVSN 183

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                     + D     A RNIP +   PV  +N+  +     
Sbjct: 184 SRKIRAGKGKMRNRRHRQRRGPLVVYKNDEGIVKALRNIPGVETCPVSALNLLQLAPGGH 243

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ ++ A  AL++ +
Sbjct: 244 VGRFVIWTEGAFGALDEVY 262


>gi|74000604|ref|XP_866430.1| PREDICTED: similar to 60S ribosomal protein L4 (L1) isoform 8
           [Canis familiaris]
          Length = 309

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 247 GRFCIWTESAFRKLDDLY 264


>gi|241567444|ref|XP_002402322.1| ribosomal protein L4, putative [Ixodes scapularis]
 gi|215500018|gb|EEC09512.1| ribosomal protein L4, putative [Ixodes scapularis]
          Length = 417

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 79/260 (30%), Gaps = 60/260 (23%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           ++V N   E  G       +F    +  I+  V    S   R   + SK       +E  
Sbjct: 10  VNVYNDKNELSGTHVALPAVFKAPIRPDIVNFVHVNMSKNNRQPYAVSKEAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRRINVAQKRYAICSA 129

Query: 114 L----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS---------- 149
           +          S      +I    +V+ + +    KTK  V   + +             
Sbjct: 130 VAATGVPGLVLSKGHKIEEIPEVPLVVSDKIQDLKKTKEAVLFLKKVKAWTDVEKVYKSR 189

Query: 150 ----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR----- 188
                               +   + D     A RNIP ++ L V  +N   +L+     
Sbjct: 190 RLRAGKGKMRNRRRIQRLGPLVVFEADNGITRAFRNIPGVDTLRVDKLN---LLKMAPGG 246

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ ++SA   L+  +
Sbjct: 247 HVGRFVIWTESAFRRLDKLY 266


>gi|11499508|ref|NP_070749.1| 50S ribosomal protein L4P [Archaeoglobus fulgidus DSM 4304]
 gi|3914743|sp|O28355|RL4_ARCFU RecName: Full=50S ribosomal protein L4P
 gi|2648622|gb|AAB89332.1| LSU ribosomal protein L4P (rpl4P) [Archaeoglobus fulgidus DSM 4304]
          Length = 252

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 84/253 (33%), Gaps = 50/253 (19%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++  V NL GE    I + E +FA + +  I+ R +      +R        S      E
Sbjct: 1   MKAKVLNLKGEVTEEIELPE-VFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
               G            R +   V Q  GG +A  P P       + KK    AL+ A++
Sbjct: 60  NWGPGHGYARVPRWKLGRRA-VVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIA 118

Query: 116 DKFCSNDI------------MVIDNLVSKECKTKYLVTRFR------------------- 144
                  +             V+ N +    +TK +   FR                   
Sbjct: 119 ATANEELVRQRSHVFEGELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRA 178

Query: 145 -------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL-V 193
                     +    ++     D     AA+N+P ++ + V+ +NV  +       +L V
Sbjct: 179 GRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTV 238

Query: 194 LSKSAIEALEDRF 206
            +KSA+E L +  
Sbjct: 239 WTKSAVEYLGEWL 251


>gi|213408030|ref|XP_002174786.1| 50S ribosomal protein L4 [Schizosaccharomyces japonicus yFS275]
 gi|212002833|gb|EEB08493.1| 50S ribosomal protein L4 [Schizosaccharomyces japonicus yFS275]
          Length = 245

 Score = 94.8 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 14/197 (7%)

Query: 24  FALKP-QQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQ 82
           F  +P ++ IL + + +++ R R G + +K RSE+  +G K+  QKGTGRAR    S   
Sbjct: 25  FLTEPLRRDILQKAVVFEANRDRAGTANTKSRSEINCSGKKLRPQKGTGRARLGDASSPM 84

Query: 83  FRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR 142
            RGG  A GP P      +P K+ S A+R ALS++F  N+++V+D+ +  E  T  L+  
Sbjct: 85  LRGGAVAHGPKPRDFTTKMPTKIFSKAMRVALSERFRQNELLVLDSPLHTEQLTSKLLNA 144

Query: 143 FRALDL------------SNALIIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRC 189
           F  L               +         ++ F  A  ++  +   LP   + +   L+ 
Sbjct: 145 FVKLHDLGAPYGRTLFILDDLSYSTSAATNKRFIEATTSLGRHCEFLPASQLQIRHALKF 204

Query: 190 SKLVLSKSAIEALEDRF 206
            KL +   A   L   +
Sbjct: 205 GKLAIEHKAFSTLYQLY 221


>gi|21228227|ref|NP_634149.1| 50S ribosomal protein L4P [Methanosarcina mazei Go1]
 gi|46396644|sp|Q8PV49|RL4_METMA RecName: Full=50S ribosomal protein L4P
 gi|20906683|gb|AAM31821.1| LSU ribosomal protein L4 [Methanosarcina mazei Go1]
          Length = 253

 Score = 94.8 bits (234), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 82/256 (32%), Gaps = 52/256 (20%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRS 55
           M      +L G   G I +   +F    +  ++ + +      +         +  K  +
Sbjct: 1   MATAKTIDLTGRTVGEIELP-AVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSA 59

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHAL 114
               +G  +        +  ++  V   +GG +A  P P       +  K R  A+R A+
Sbjct: 60  TGWGSGRGVSHVPRLKNSSRAA-RVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAI 118

Query: 115 S------------DKFCSNDIMVIDNLVSKECKTKYLVTRFR------------------ 144
           +              F +   +V  N +    +TK ++                      
Sbjct: 119 AATIDPTLVNLRGHIFEAELPIVAVNDLENLERTKQVIEFLEAAGLYEDVLRAKYGRHIR 178

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSKL 192
                           ++     +     AARN+  ++++ V  +N  ++L       +L
Sbjct: 179 AGRGKLRGRKYKHKKSVLIVAGENSPILKAARNLSGVDVVTVDSLNA-ELLAPGTHAGRL 237

Query: 193 -VLSKSAIEALEDRFK 207
            V ++SAI  LE  F+
Sbjct: 238 TVWTESAIGKLEGAFQ 253


>gi|311245330|ref|XP_003121789.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L4 [Sus
           scrofa]
          Length = 512

 Score = 94.4 bits (233), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 93  ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 151

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 152 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 211

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 212 ALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYAS 271

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 272 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 331

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L++ +
Sbjct: 332 GRFCIWTESAFRKLDELY 349


>gi|146422131|ref|XP_001487007.1| hypothetical protein PGUG_00384 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146388128|gb|EDK36286.1| hypothetical protein PGUG_00384 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 236

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 89/199 (44%), Gaps = 4/199 (2%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E K  + +    F    ++ IL   + +++   R+G      +S+  Y+  K++ QKGTG
Sbjct: 37  EPKTFVPLPASFFDAPFRRDILWSAVVYEADGARVGSGYVPTKSDKLYSNRKLHPQKGTG 96

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           RAR    +        KA G   P      LP+K+ + A++ A+SD++   +I ++++ V
Sbjct: 97  RARVGDANSPIRDNEIKAHGIKAPHDWSTDLPRKIYNKAVKTAISDQYRKGNIFIVEDGV 156

Query: 131 SKECKTKYLVTRF--RALDLSNALIIDGCQLDRNFQLAARNIP-NINLLPVQGINVYDIL 187
             +   +    +F          L+    +   N   +   +    +++  + + V D+L
Sbjct: 157 DFKYAHQDATKQFVEAHSLDKLHLLFITNEQRTNLLESTEYLGTKGDVIVKEAVQVRDLL 216

Query: 188 RCSKLVLSKSAIEALEDRF 206
           + +++ +   A++ +  ++
Sbjct: 217 KANRIYIEADALKWMIGKY 235


>gi|62087534|dbj|BAD92214.1| ribosomal protein L4 variant [Homo sapiens]
          Length = 441

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 22  ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 80

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 81  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 140

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 141 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 200

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 201 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 260

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L++ +
Sbjct: 261 GRFCIWTESAFRKLDELY 278


>gi|34764037|ref|ZP_00144923.1| LSU ribosomal protein L1E (= L4P) [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886201|gb|EAA23491.1| LSU ribosomal protein L1E (= L4P) [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 127

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 66/126 (52%), Gaps = 2/126 (1%)

Query: 83  FRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTR 142
             GGG  FGP P      + KKVR+LALR ALS K  + +++V+D    +  KTK +V  
Sbjct: 1   MVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGNVLVLDYDGIETPKTKVIVNL 60

Query: 143 FRALDLSNALIIDGCQL--DRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200
              +D     +     L  D N  L+ARN+ N  +L    I VY +L+  K++L+K A+ 
Sbjct: 61  VNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVILQPNEIGVYWLLKQEKVILTKEALA 120

Query: 201 ALEDRF 206
            +E+  
Sbjct: 121 VVEEVL 126


>gi|76803058|ref|YP_331153.1| 50S ribosomal protein L4P [Natronomonas pharaonis DSM 2160]
 gi|109893609|sp|Q3IMY7|RL4_NATPD RecName: Full=50S ribosomal protein L4P
 gi|76558923|emb|CAI50519.1| ribosomal protein L4.eR [Natronomonas pharaonis DSM 2160]
          Length = 248

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 86/253 (33%), Gaps = 54/253 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++ +VR+LDG+D G + +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MKATVRDLDGDDAGEVELP-AVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALS 115
              +G  M       R    ++ V Q   G  A  P         +  K R LA R A++
Sbjct: 60  SPGSGRGM---AHVPRQNGRAREVPQAVSGRPAHPPKAEKDRGLDINTKERKLATRSAIA 116

Query: 116 DKFCSNDI--------------MVIDNLVSKECKTKYLVTRF------------------ 143
               ++ +              +V+ +      KT+  V                     
Sbjct: 117 ATANADRVEERGHEFDEETDLPLVVSDEFEDLVKTQEAVDVLEALGVYDDIERAEDGKTV 176

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
                  R    +    +     D    LAARN+   ++     +NV D+    +  +L 
Sbjct: 177 RAGRGTTRGRKYTEPKSVLVVTSDDQ-SLAARNLAGSDVATADEVNVEDLAPGTQAGRLT 235

Query: 193 VLSKSAIEALEDR 205
           + ++SA+  + +R
Sbjct: 236 LWTESALAEVAER 248


>gi|330508497|ref|YP_004384925.1| 50S ribosomal protein L4/L1 family [Methanosaeta concilii GP-6]
 gi|328929305|gb|AEB69107.1| ribosomal protein L4/L1 family [Methanosaeta concilii GP-6]
          Length = 257

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 84/250 (33%), Gaps = 52/250 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           ++ +V +L G   G I +   +F  + +  I+ R +      +         +     + 
Sbjct: 1   MKTNVIDLSGNAAGEIELP-AVFEEEYRPDIIKRAVLAAQANRLQAYGPHFYAGMNTSAV 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHALS 115
              TG            R ++  V    GG ++  P P       + KK R  A+R A++
Sbjct: 60  SWGTGHGTSRVLRLKNGRRAA-GVPMAVGGRRSHAPQPNAVYSEKVNKKERRKAIRSAIA 118

Query: 116 ------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS-------------- 149
                        KF     +V  N +    KT  ++    A  L               
Sbjct: 119 ATASSGLVEARGHKFSRELPVVAKNDLEALSKTSDIIKFLMAAGLWDDVLRAKAGRHIRA 178

Query: 150 ------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSKL- 192
                          ++     D     AARN+P ++ + V  +N  ++L    R  +L 
Sbjct: 179 GKGKLRGRKYKGRKSLLIVAGNDAGLGKAARNLPGVDFVTVDMLNA-ELLAPGTRAGRLT 237

Query: 193 VLSKSAIEAL 202
           V ++S++E L
Sbjct: 238 VWTESSLEKL 247


>gi|328910078|gb|AEB61674.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens LL3]
          Length = 100

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 56/99 (56%)

Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167
           +A++  LS K   N+I+V+++L     KTK +    + L +    +I     +    L+A
Sbjct: 1   MAIKSVLSSKVNDNNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADANEAVSLSA 60

Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           RNIP + ++   GINV D++   KL+++K+A+E +E+  
Sbjct: 61  RNIPGVTVVQANGINVLDVVNHEKLLITKAAVEKVEEVL 99


>gi|85101200|ref|XP_961104.1| 60S ribosomal protein L4-A [Neurospora crassa OR74A]
 gi|12718316|emb|CAC28667.1| probable ribosomal protein RPL4A [Neurospora crassa]
 gi|28922643|gb|EAA31868.1| 60S ribosomal protein L4-A [Neurospora crassa OR74A]
          Length = 361

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 76/264 (28%), Gaps = 60/264 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +++   DG+  G   V   +F    +  I+  V    +  KR        +  +  +E
Sbjct: 5   PTVTIIGADGKATGTTEVLPKVFGAPIRPDIVKHVHTGMAKNKRQPYSVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKVNQGQKRFATA 124

Query: 112 ----------------HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR----------- 144
                           H +S       ++V     S   KT   +   +           
Sbjct: 125 SALAASAAAPLLMARGHQVST-VPEVPLVVDSAAFSGVNKTANALALLKAVGAGADVQKA 183

Query: 145 -----------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDI 186
                                   L++   + D ++     RNIP +   PV  +N+  +
Sbjct: 184 KASKKLRAGKGKLRDRRHRQRRGPLVVYSAETDGKDLIKGFRNIPGVETSPVDALNLLQL 243

Query: 187 LRCSKL----VLSKSAIEALEDRF 206
                L    V + +AI+ L+  +
Sbjct: 244 APGGHLGRFIVWTSAAIKELDAVY 267


>gi|37779080|gb|AAP20200.1| ribosomal protein L4 [Pagrus major]
          Length = 367

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G   V   +F    +  ++  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGETAGKNVVMPAVFKAPIRPDVVNFVHTNMRKNSRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 VAASAIPALVMSKGHRIEEIPEVPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I L  V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNQDAGVTKAFRNIPGITLQNVNKLNLLRLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|254582070|ref|XP_002497020.1| ZYRO0D13552p [Zygosaccharomyces rouxii]
 gi|238939912|emb|CAR28087.1| ZYRO0D13552p [Zygosaccharomyces rouxii]
          Length = 258

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 27/209 (12%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           V  ++ A   ++ IL R + +++  KR+G S   GRS+  Y+  K++ QKGTGRAR    
Sbjct: 47  VPTNVLAAPLRRDILWRAVVYENDNKRVGSSNPPGRSDNGYSRRKLFPQKGTGRARAGDA 106

Query: 79  SVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS------ 131
           +      GG+A     P      LP K+ S A R+ALS ++    + VI           
Sbjct: 107 NSPIRSTGGRALPRKAPNDFSTELPSKLYSAAFRNALSYQYQQGKLFVIGGQNLLQDTNE 166

Query: 132 -----------------KECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP-NI 173
                             +   K  +  +         I+   +   +          N+
Sbjct: 167 LDLNELEILPRDPESNDGDLIFKKFLKEYNLQKKKLLFIV--SEPRESLLQYTEEFKENV 224

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEAL 202
           +++  + I+V DIL+  ++ +   A+E L
Sbjct: 225 DIVQQEFIDVNDILKAHRIFIELEALEYL 253


>gi|225706604|gb|ACO09148.1| 60S ribosomal protein L4-A [Osmerus mordax]
          Length = 376

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G   V   +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+D+ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEIPEVPLVVDDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I L  V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCIIYNQDAGVTKAFRNIPGITLQNVNKLNLLRLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|12846949|dbj|BAB27375.1| unnamed protein product [Mus musculus]
          Length = 419

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGFKKTKEAVQLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|39645153|gb|AAH63811.1| Ribosomal protein L4 [Rattus norvegicus]
 gi|51980641|gb|AAH81801.1| Ribosomal protein L4 [Rattus norvegicus]
 gi|149041947|gb|EDL95788.1| rCG58071, isoform CRA_a [Rattus norvegicus]
          Length = 421

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|297672005|ref|XP_002814110.1| PREDICTED: 60S ribosomal protein L4-like [Pongo abelii]
          Length = 427

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVQGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNGIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L++ +
Sbjct: 247 GRFCIWTESAFRKLDELY 264


>gi|321251817|ref|XP_003192188.1| ribosomal protein L4 [Cryptococcus gattii WM276]
 gi|317458656|gb|ADV20401.1| Ribosomal protein L4, putative [Cryptococcus gattii WM276]
          Length = 407

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 91/250 (36%), Gaps = 64/250 (25%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           I++  D+FA   ++ IL R + W   + R G   +K RS VAY+G K+  QKGTG+AR  
Sbjct: 126 IALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQKGTGKARAG 185

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK- 135
             S    RGG       P     ALP+KVR L++R ALS K  +  + V+ NL     K 
Sbjct: 186 DASSGTRRGGAPIHPIFPKNWAQALPRKVRDLSMRIALSSKLQAGLLRVVPNLNEAGWKG 245

Query: 136 ----TKYLVTRFRALDLSNALIIDGCQLD-RNFQL-AARNIPNINLL------------- 176
                + L       +   +  +   + D       A   +  +N L             
Sbjct: 246 TNEARRALADGLAFPEAEASEKVQATKSDVEPLAKDAVEAVEKVNELEGTIPEVTPSAIE 305

Query: 177 --------PVQGINV------------------------------------YDILRCSKL 192
                   P + ++V                                    YDIL+   L
Sbjct: 306 PVSIPRFGPAKDLSVLFLYSPFKPSDEIADFIRVTRNIPGVEVLSTEEVQVYDILKYRWL 365

Query: 193 VLSKSAIEAL 202
           V+   A++  
Sbjct: 366 VMEGEAVDWF 375


>gi|30794450|ref|NP_077174.1| 60S ribosomal protein L4 [Mus musculus]
 gi|22001911|sp|Q9D8E6|RL4_MOUSE RecName: Full=60S ribosomal protein L4
 gi|12842070|dbj|BAB25458.1| unnamed protein product [Mus musculus]
 gi|13097450|gb|AAH03459.1| Ribosomal protein L4 [Mus musculus]
 gi|26353248|dbj|BAC40254.1| unnamed protein product [Mus musculus]
 gi|62825991|gb|AAH94036.1| Ribosomal protein L4 [Mus musculus]
 gi|74139207|dbj|BAE38489.1| unnamed protein product [Mus musculus]
 gi|74177798|dbj|BAE38990.1| unnamed protein product [Mus musculus]
 gi|74185075|dbj|BAE39140.1| unnamed protein product [Mus musculus]
 gi|74188888|dbj|BAE39218.1| unnamed protein product [Mus musculus]
 gi|74194326|dbj|BAE24683.1| unnamed protein product [Mus musculus]
 gi|124376026|gb|AAI32324.1| Ribosomal protein L4 [Mus musculus]
 gi|124376376|gb|AAI32322.1| Ribosomal protein L4 [Mus musculus]
 gi|148694109|gb|EDL26056.1| ribosomal protein L4 [Mus musculus]
          Length = 419

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|20089943|ref|NP_616018.1| 50S ribosomal protein L4P [Methanosarcina acetivorans C2A]
 gi|46396645|sp|Q8TRU6|RL4_METAC RecName: Full=50S ribosomal protein L4P
 gi|19914904|gb|AAM04498.1| ribosomal protein L4 [Methanosarcina acetivorans C2A]
          Length = 253

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 83/256 (32%), Gaps = 52/256 (20%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRS 55
           M      +L G+  G + +   +F    +  ++ + +      +         S  +  +
Sbjct: 1   MATAKTIDLTGKAVGEVELP-AVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSA 59

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHAL 114
               +G  +        +  ++  V   +GG +A  P P       +  K R  A+R A+
Sbjct: 60  RGWGSGRGVSHVPRLVNSSRAA-RVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAI 118

Query: 115 S------------DKFCSNDIMVIDNLVSKECKTKYLVTRFR------------------ 144
           +              F +   +V  N +    +TK ++                      
Sbjct: 119 AATTDPTLVSLRGHIFEAELPIVAVNDLESLERTKQVIEFLEAAGLYEDVLRAKYGRHIR 178

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSKL 192
                           ++     +     AARN+  ++++ V  +N  ++L       +L
Sbjct: 179 AGRGKLRGRKYKHKKSVLIVAGENTPILKAARNLSGVDVVTVDSLNA-ELLAPGTHAGRL 237

Query: 193 -VLSKSAIEALEDRFK 207
            V ++SAI  LE  F+
Sbjct: 238 TVWTESAIGKLEGAFQ 253


>gi|58262906|ref|XP_568863.1| ribosomal protein L4 [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57223513|gb|AAW41556.1| ribosomal protein L4, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 406

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 62/119 (52%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           I++  D+FA   ++ IL R + W   + R G   +K RS VAY+G K+  QKGTG+AR  
Sbjct: 126 IALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQKGTGKARAG 185

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
             S    RGG       P     ALP+KVR L +R ALS K  +  + V+ NL     K
Sbjct: 186 DASSGTRRGGAPIHPIFPKNWAQALPRKVRELGMRVALSSKLKAGLLRVVPNLNEAGWK 244



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
           +F    RNIP + +L  + + VYDIL+   LV+   A++  
Sbjct: 334 DFVRVTRNIPGVEVLSTEEVQVYDILKYRWLVMEGEAVDWF 374


>gi|134108222|ref|XP_777062.1| hypothetical protein CNBB2940 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259747|gb|EAL22415.1| hypothetical protein CNBB2940 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 406

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/119 (38%), Positives = 62/119 (52%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           I++  D+FA   ++ IL R + W   + R G   +K RS VAY+G K+  QKGTG+AR  
Sbjct: 126 IALPPDVFAQPIRRDILHRCVVWYLSQLRSGTKSTKSRSTVAYSGRKLIPQKGTGKARAG 185

Query: 77  SKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
             S    RGG       P     ALP+KVR L +R ALS K  +  + V+ NL     K
Sbjct: 186 DASSGTRRGGAPIHPIFPKNWAQALPRKVRELGMRVALSSKLKAGLLRVVPNLNEAGWK 244



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
           +F    RNIP + +L  + + VYDIL+   LV+   A++  
Sbjct: 334 DFVRVTRNIPGVEVLSTEEVQVYDILKYRWLVMEGEAVDWF 374


>gi|296212254|ref|XP_002752764.1| PREDICTED: 60S ribosomal protein L4-like [Callithrix jacchus]
          Length = 437

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCHGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRVEEVPELPLVVEDKVEGYKKTKEAVLILKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRASKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSQLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|208965460|dbj|BAG72744.1| ribosomal protein L4 [synthetic construct]
          Length = 427

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L++ +
Sbjct: 247 GRFCIWTESAFRKLDELY 264


>gi|50425441|ref|XP_461314.1| DEHA2F22330p [Debaryomyces hansenii CBS767]
 gi|49656983|emb|CAG89715.1| DEHA2F22330p [Debaryomyces hansenii]
          Length = 255

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 15/205 (7%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +    F    ++  L   + +++ R R+G      + +  Y+  K++ QKGTGRAR  
Sbjct: 46  VPLPTQFFDAPLRRDFLWSAVVYEADRARVGSGYVITKGDKLYSNRKLHPQKGTGRARTG 105

Query: 77  SKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECK 135
             +        KA G   P      LP KV S A + ALSD++ +  + +I    S    
Sbjct: 106 DANSPIRDNEVKAHGVKAPHDWSTRLPSKVYSKAFQTALSDQYRNGKVFIIGGDKSATKA 165

Query: 136 TKYLVTRFRA-LDLSNALIIDGCQLDRNFQL----AAR-NI--------PNINLLPVQGI 181
           +  +V  F+     +    ++   LDR   L    A R N+           ++L  + +
Sbjct: 166 SDDVVADFKYDHPEATRQFVEAHDLDRLSLLFITDAQRDNLINSTEYVGKKADVLIKEAV 225

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
            V DIL+ +++ +   A++    ++
Sbjct: 226 EVRDILKANRIYIEAPALQWFIGKY 250


>gi|11968086|ref|NP_071955.1| 60S ribosomal protein L4 [Rattus norvegicus]
 gi|1710511|sp|P50878|RL4_RAT RecName: Full=60S ribosomal protein L4; AltName: Full=60S ribosomal
           protein L1
 gi|1165139|emb|CAA57671.1| ribosomal protein L4 [Rattus norvegicus]
          Length = 421

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 76/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 114 LSDKFCSNDIMVIDNLVSKEC--------------KTKYLVTRFRALDLSNALIIDGC-- 157
           L+       +M   + V +                KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|16579885|ref|NP_000959.2| 60S ribosomal protein L4 [Homo sapiens]
 gi|114657764|ref|XP_001174726.1| PREDICTED: similar to ribosomal protein isoform 2 [Pan troglodytes]
 gi|22002063|sp|P36578|RL4_HUMAN RecName: Full=60S ribosomal protein L4; AltName: Full=60S ribosomal
           protein L1
 gi|432359|dbj|BAA04887.1| ribosomal protein [Homo sapiens]
 gi|12655035|gb|AAH01365.1| Ribosomal protein L4 [Homo sapiens]
 gi|13543304|gb|AAH05817.1| Ribosomal protein L4 [Homo sapiens]
 gi|14043526|gb|AAH07748.1| Ribosomal protein L4 [Homo sapiens]
 gi|14124944|gb|AAH07996.1| Ribosomal protein L4 [Homo sapiens]
 gi|14602748|gb|AAH09888.1| Ribosomal protein L4 [Homo sapiens]
 gi|14603400|gb|AAH10151.1| Ribosomal protein L4 [Homo sapiens]
 gi|15779181|gb|AAH14653.1| Ribosomal protein L4 [Homo sapiens]
 gi|17932934|dbj|BAB79458.1| ribosomal protein L4 [Homo sapiens]
 gi|44890465|gb|AAH66925.1| Ribosomal protein L4 [Homo sapiens]
 gi|60656419|gb|AAX32773.1| ribosomal protein L4 [synthetic construct]
 gi|66267594|gb|AAH95427.1| Ribosomal protein L4 [Homo sapiens]
 gi|119598182|gb|EAW77776.1| ribosomal protein L4, isoform CRA_c [Homo sapiens]
 gi|123982748|gb|ABM83115.1| ribosomal protein L4 [synthetic construct]
 gi|123997415|gb|ABM86309.1| ribosomal protein L4 [synthetic construct]
 gi|158255670|dbj|BAF83806.1| unnamed protein product [Homo sapiens]
 gi|158257150|dbj|BAF84548.1| unnamed protein product [Homo sapiens]
          Length = 427

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|90075136|dbj|BAE87248.1| unnamed protein product [Macaca fascicularis]
          Length = 427

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|19112671|ref|NP_595879.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe 972h-]
 gi|15214260|sp|Q9P784|RL4B_SCHPO RecName: Full=60S ribosomal protein L4-B
 gi|7630164|emb|CAB88236.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe]
          Length = 363

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 79/259 (30%), Gaps = 54/259 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +S+ N DG           +F    +  ++  V    +  KR        +  +  +E
Sbjct: 6   PTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A+ 
Sbjct: 66  SWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIA 125

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            A++            + I       +V+D+ V    KTK  V   + +     +I    
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVAN 185

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A RNIP + ++ V+ +N+  +     
Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ +KSA   L+  F
Sbjct: 246 LGRFVIWTKSAFGLLDSVF 264


>gi|109081580|ref|XP_001110778.1| PREDICTED: 60S ribosomal protein L4-like isoform 4 [Macaca mulatta]
          Length = 427

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|75076107|sp|Q4R5P9|RL4_MACFA RecName: Full=60S ribosomal protein L4
 gi|67970467|dbj|BAE01576.1| unnamed protein product [Macaca fascicularis]
          Length = 427

 Score = 92.1 bits (227), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHSIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L++ +
Sbjct: 247 GRFCIWTESAFRKLDELY 264


>gi|323164884|gb|EFZ50675.1| 50S ribosomal protein L4 [Shigella sonnei 53G]
          Length = 104

 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1   MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPK 103
            K + QKGTGRAR  S     +R GG  F   P      L +
Sbjct: 57  KKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKLTR 98


>gi|91083757|ref|XP_971634.1| PREDICTED: similar to ribosomal protein L4e [Tribolium castaneum]
 gi|270006788|gb|EFA03236.1| hypothetical protein TcasGA2_TC013168 [Tribolium castaneum]
          Length = 404

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 84/258 (32%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV N   E+  G   V   +F    +  ++  V +  S   R        +  +  +E 
Sbjct: 10  VSVYNEKSEEVKGETVVLPAVFKAPIRPDVVNFVHQQLSMNHRQAYCVSDKAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNVNQRRYALAS 129

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S     + +    +V+ + V +  KTK  V   R +     +      
Sbjct: 130 AVAASGVPALVMSKGHVIDQVPELPLVVSDKVQEMNKTKQAVQFLRRIKAWADIQKVYKS 189

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D+  + A RNIP I+L+ V+ +N+  +      
Sbjct: 190 QRFRAGKGKMRNRRRIQRRGPLVVYHKDQGLRRAFRNIPGIDLISVEKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA + L+  F
Sbjct: 250 GRFVIWTESAFQRLDKLF 267


>gi|20093852|ref|NP_613699.1| 50S ribosomal protein L4P [Methanopyrus kandleri AV19]
 gi|46396647|sp|Q8TY91|RL4_METKA RecName: Full=50S ribosomal protein L4P
 gi|19886781|gb|AAM01629.1| Ribosomal protein L4 [Methanopyrus kandleri AV19]
          Length = 260

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 88/259 (33%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +E  V NL+GE+   + +    F    ++ ++ R +      +R        +  +  +E
Sbjct: 1   MEAPVFNLEGEEVDTVELP-SFFEEPVRKDLIRRAVLAAQANRRQPYGTDPRAGFRTSAE 59

Query: 57  VAYTGSK---MYVQKGTGRARHSS-KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
               G     +   KG           V+Q  GG KA  P P       + +K R  ALR
Sbjct: 60  SWGAGHGVAMVPRVKGRRHPAAGRAARVAQAVGGQKAHAPTPEKDWTQRVNRKERRAALR 119

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLS-------- 149
            AL+       +              +V+ + +    K + +   F+++ L         
Sbjct: 120 SALAATAKPEFVKERGHVIDDVPHLPVVVVDELKSLNKAREVREFFKSVGLWADVERAKS 179

Query: 150 ------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LR 188
                                ++     D   +L ARN P ++++    + V  +     
Sbjct: 180 NRRIRAGKGKRRGRRYVKPKSVLIVVDEDEGIKLGARNHPGVDVVEAMHLGVEHLAPGAH 239

Query: 189 CSKL-VLSKSAIEALEDRF 206
             +L V +  A+E LE+R 
Sbjct: 240 PGRLTVFTPGALEVLEERL 258


>gi|302693781|ref|XP_003036569.1| hypothetical protein SCHCODRAFT_83802 [Schizophyllum commune H4-8]
 gi|300110266|gb|EFJ01667.1| hypothetical protein SCHCODRAFT_83802 [Schizophyllum commune H4-8]
          Length = 370

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 82/259 (31%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSE 56
             ++VR   GE    + +   +F    +  ++A V +  +  KR   +       +  +E
Sbjct: 5   PTVNVRTSSGEASTSLPLP-AVFTAPIRLDVVAAVHKSVAKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          + +  R  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRFATV 123

Query: 112 HALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            +L+            + I       +VID+      KTK  V   + L     ++    
Sbjct: 124 SSLAATALPSLVLARGHRIEEIEEVPLVIDSAAESFTKTKEAVALLKTLKAYRDVVKVSN 183

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A RN+P + L+ V+ +NV  +     
Sbjct: 184 SRKLRAGKGKLRNRRHRQRRGPLVVYNEDNGIVKAFRNLPGVELVNVRRLNVLQLAPGGH 243

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ ++ A   L++ F
Sbjct: 244 LGRFVIWTEGAFGLLDEVF 262


>gi|315425681|dbj|BAJ47338.1| large subunit ribosomal protein L4e [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427563|dbj|BAJ49162.1| large subunit ribosomal protein L4e [Candidatus Caldiarchaeum
           subterraneum]
          Length = 272

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 95/258 (36%), Gaps = 54/258 (20%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEV 57
            ++V NL+GE    I++   IF+   ++ +++R     +            S  K   E 
Sbjct: 16  TVNVYNLEGEAAETITLP-SIFSAPLREDLVSRAYIHLATHSLQPKGASKMSGHKHSIES 74

Query: 58  AYTG---SKMYVQKGTGRARHSSKSVSQFRGGGKA-FGPVPIIGVHA-LPKKVRSLA--- 109
              G   +++   KG G  ++ +  +     GG+    P P   +H  + KK    A   
Sbjct: 75  WGPGFGIARISRIKGRGTPKYGAGGMVPSAVGGRPTHPPTPEKKIHKQINKKELRNALLA 134

Query: 110 ----LRHALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      K   + I       +++D+ +    KT  +      L L + L   G +
Sbjct: 135 ALAFTASPQHVKTRGHRITEQTLLPIIVDDGLEALSKTAEVRRVLIKLGLGDELKRCGVK 194

Query: 159 L-------------------------DRNFQLAARNIPNINLLPVQGINVYDI---LRCS 190
                                     DR    AA NIP + ++  + ++V  +    +  
Sbjct: 195 KVRAGKGKMRGRRYKRRKGPLIVVAADRGVGKAASNIPGVEVVTAKDLSVLHLAPGAKPG 254

Query: 191 KL-VLSKSAIEALEDRFK 207
           +L + +KSA++ALE+R K
Sbjct: 255 RLTLFTKSALKALEERLK 272


>gi|149692303|ref|XP_001497144.1| PREDICTED: similar to ribosomal protein L4 [Equus caballus]
          Length = 422

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 247 GRFCIWTESAFRKLDDLY 264


>gi|57108289|ref|XP_535522.1| PREDICTED: similar to ribosomal protein L4 isoform 1 [Canis
           familiaris]
 gi|74000590|ref|XP_852791.1| PREDICTED: similar to ribosomal protein L4 isoform 1 [Canis
           familiaris]
 gi|74004019|ref|XP_849762.1| PREDICTED: similar to ribosomal protein L4 isoform 2 [Canis
           familiaris]
          Length = 422

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 247 GRFCIWTESAFRKLDDLY 264


>gi|328847985|gb|EGF97261.1| hypothetical protein MELLADRAFT_46232 [Melampsora larici-populina
           98AG31]
 gi|328851234|gb|EGG00391.1| hypothetical protein MELLADRAFT_73186 [Melampsora larici-populina
           98AG31]
          Length = 350

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 2/142 (1%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +S+ +F    +  I+ R + ++    R G + +K RSEVA +G K+  QKGTGRAR    
Sbjct: 76  LSKYVFGQPNRPDIIHRCVMFERSLMRSGSANTKTRSEVAMSGRKLRPQKGTGRARIGDA 135

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN--LVSKECKT 136
           S    R GG AFGP P      + +KV  L LR  LS ++   +++++D   +   E  +
Sbjct: 136 SSPTLRKGGVAFGPKPKDWSQGIQRKVWELGLRTVLSQRWRDGNLILVDRFSMNDTEYGS 195

Query: 137 KYLVTRFRALDLSNALIIDGCQ 158
           + L         S+A++I G  
Sbjct: 196 EQLAELITQKGWSDAMLIAGGD 217


>gi|325068032|ref|ZP_08126705.1| 50S ribosomal protein L4 [Actinomyces oris K20]
          Length = 123

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 90  FGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKE-CKTKYLVTRFRALDL 148
            GP P       PKK+++ ALR ALSD+  +  + VI   V+     TK  +   R L  
Sbjct: 2   HGPQPRDYTQRTPKKMKAAALRSALSDRARNGRVHVITEFVTTTVPSTKNALVALRNLTD 61

Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
               ++   + D   +L+ RN P  ++L    +N YD+L+   +V + S ++A 
Sbjct: 62  -RKALVIVDRQDDLSRLSLRNAPEAHVLWADQLNTYDVLKSDDVVFTASGLDAF 114


>gi|213512258|ref|NP_001135255.1| 60S ribosomal protein L4-A [Salmo salar]
 gi|209155410|gb|ACI33937.1| 60S ribosomal protein L4-A [Salmo salar]
 gi|221220200|gb|ACM08761.1| 60S ribosomal protein L4-A [Salmo salar]
          Length = 388

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +S+ +  GE  G   V   +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISIYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+D+ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D+    A RNIP I L  V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCIIYNQDQGVTKAFRNIPGITLQNVNKLNLLRLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+  +
Sbjct: 248 RFCIWTESAFRKLDQLY 264


>gi|197632149|gb|ACH70798.1| ribosomal protein L4-b [Salmo salar]
          Length = 388

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +S+ +  GE  G   V   +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISIYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+D+ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D+    A RNIP I L  V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCIIYNQDQGVTKAFRNIPGITLQNVNKLNLLRLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+  +
Sbjct: 248 RFCIWTESAFRKLDQLY 264


>gi|10120922|pdb|1FFK|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
           Haloarcula Marismortui At 2.4 Angstrom Resolution
 gi|14278036|pdb|1GIY|F Chain F, Crystal Structure Of The Ribosome At 5.5 A Resolution.
           This File, 1giy, Contains The 50s Ribosome Subunit. The
           30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
           In The File 1gix
 gi|28373725|pdb|1ML5|FF Chain f, Structure Of The E. Coli Ribosomal Termination Complex
           With Release Factor 2
 gi|66361022|pdb|1YL3|F Chain F, Crystal Structure Of 70s Ribosome With Thrs Operator And
           Trnas. Large Subunit. The Coordinates For The Small
           Subunit Are In The Pdb Entry 1yl4.
 gi|88192262|pdb|2B66|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release
           Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
           File Contains The 50s Subunit From A Crystal Structure
           Of Release Factor Rf1, Trnas And Mrna Bound To The
           Ribosome And Is Described In Remark 400
 gi|88192325|pdb|2B9N|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of Release
           Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
           File Contains The 50s Subunit From A Crystal Structure
           Of Release Factor Rf1, Trnas And Mrna Bound To The
           Ribosome And Is Described In Remark 400.
 gi|88192380|pdb|2B9P|F Chain F, 50s Ribosomal Subunit From A Crystal Structure Of The
           Ribosome In Complex With Trnas And Mrna With A Stop
           Codon In The A-Site. This File Contains The 50s Subunit
           From A Crystal Structure Of The Ribosome In Complex With
           Trnas And Mrna With A Stop Codon In The A-Site And Is
           Described In Remark 400
          Length = 246

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 83/251 (33%), Gaps = 52/251 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           +E ++ +LDG   G + + + +F    +  ++ + +R     ++        +  +  +E
Sbjct: 1   MEATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
              +G     Q    +    ++ V Q   G  A  P         L  K R LA+R AL+
Sbjct: 60  SFGSGRG---QAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALA 116

Query: 116 DKFCSNDI-------------MVIDNLVSKECKTKYLVTRF------------------- 143
               ++ +             +V+ +      KT+ +V+                     
Sbjct: 117 ATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKA 176

Query: 144 -----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVL 194
                R         I     D     AARN+   ++     +N  D+          V 
Sbjct: 177 GQGSARGRKYRRPASILFVTSDEPST-AARNLAGADVATASEVNTEDLAPGGAPGRLTVF 235

Query: 195 SKSAIEALEDR 205
           ++SA+  + +R
Sbjct: 236 TESALAEVAER 246


>gi|296213527|ref|XP_002753304.1| PREDICTED: 60S ribosomal protein L4-like [Callithrix jacchus]
          Length = 428

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|255717917|ref|XP_002555239.1| KLTH0G04642p [Lachancea thermotolerans]
 gi|238936623|emb|CAR24802.1| KLTH0G04642p [Lachancea thermotolerans]
          Length = 254

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 23/209 (11%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + V   +     ++ IL + + +++  KR+G S   GRSE  Y+  K+  QKG+G+AR  
Sbjct: 40  VPVPASVLDAPLRRDILWKAVVYENDNKRVGSSNPPGRSENGYSRRKLLPQKGSGKARAG 99

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI--------- 126
             +      G +A     P      LP+KV S A  +ALS ++   ++ +I         
Sbjct: 100 DANSPTRHNGARALARSAPNDYTTKLPQKVYSQAFINALSYQYRRGNLFIIGGTHSLCET 159

Query: 127 ---DNLVSKECKTKY--------LVTRFRALDLSNALIIDGCQLDRN--FQLAARNIPNI 173
              D    +   T               +  +L    ++      R   F+ +     N+
Sbjct: 160 HDLDVNELEVLPTSLENDDGELVFEKFLQEHELQKQNLLFVINAPRGGLFRYSEPFKENV 219

Query: 174 NLLPVQGINVYDILRCSKLVLSKSAIEAL 202
           N++  + ++V DIL+  ++ +   A+E L
Sbjct: 220 NIVQKEFVDVNDILKARRIFIELEALEYL 248


>gi|62460480|ref|NP_001014894.1| 60S ribosomal protein L4 [Bos taurus]
 gi|73917531|sp|Q58DW0|RL4_BOVIN RecName: Full=60S ribosomal protein L4
 gi|61553010|gb|AAX46334.1| ribosomal protein L4 [Bos taurus]
 gi|74267758|gb|AAI02522.1| Ribosomal protein L4 [Bos taurus]
 gi|296483623|gb|DAA25738.1| 60S ribosomal protein L4 [Bos taurus]
          Length = 422

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|331215175|ref|XP_003320268.1| 50S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309299258|gb|EFP75849.1| 50S ribosomal protein L4 [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 339

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +S  +F    +  I+ R + ++    R G + +K RSEVA +G K+  QKG+GRAR    
Sbjct: 60  LSSFVFGQPFRSDIIHRCVNFERSLMRSGSANTKTRSEVAMSGRKLRPQKGSGRARLGDA 119

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--ECKT 136
           S    R GG AFGP P      + +KV  L LR  LS ++    ++V+D       E  +
Sbjct: 120 SSPTLRKGGAAFGPKPKDWAQGIQRKVWELGLRTILSQRWREGRLIVVDKFEMDGQEEAS 179

Query: 137 KYLVTRFRALDLSNALIIDG 156
           + L         S+A++I G
Sbjct: 180 EQLARLMNQRAWSSAVMIAG 199


>gi|312177|emb|CAA51666.1| ribosomal protein L2 [Schizosaccharomyces pombe]
          Length = 357

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 78/259 (30%), Gaps = 54/259 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +S+ N DG           +F    +  ++  V    +  KR        +  +  +E
Sbjct: 6   PTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G +R    +       G+ F            + +  +  A  
Sbjct: 66  SWGTGRALARIPRVGGGGTSRSGQAAFGNMCRSGRMFASTKTWRKWHVKVNQNEKRYATC 125

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            A++            + I       +V+D+ V    KTK  V   + +     +I    
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVAN 185

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A RNIP + ++ V+ +N+  +     
Sbjct: 186 SRKLRAGKGKLANRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ +KSA   L+  F
Sbjct: 246 LGRFVIWTKSAFGLLDSVF 264


>gi|197097764|ref|NP_001125225.1| 60S ribosomal protein L4 [Pongo abelii]
 gi|75055142|sp|Q5RCR3|RL4_PONAB RecName: Full=60S ribosomal protein L4
 gi|55727377|emb|CAH90444.1| hypothetical protein [Pongo abelii]
          Length = 427

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKARNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L++ +
Sbjct: 247 GRFCIWTESAFRKLDELY 264


>gi|321262877|ref|XP_003196157.1| 60s ribosomal protein L4-B [Cryptococcus gattii WM276]
 gi|317462632|gb|ADV24370.1| 60s ribosomal protein L4-B, putative [Cryptococcus gattii WM276]
          Length = 363

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V +  GE  G + +   +F    +  ++ +V +  +  +R        +  +  +E
Sbjct: 5   PTVTVWSATGESSGSLPLP-AVFTAPIRLDVVQQVHKSIAKNRRQAYAVAENAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          + +  R  A+ 
Sbjct: 64  SWGTGRAVARIPRVGGGGTQRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRYAVA 123

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL+     + +              +V+ + +    KTK  V   + +     +     
Sbjct: 124 SALAASALPSLVLARGHRIEQIQEVPLVLSSSIESTDKTKAAVELLKTVAAYPDISKVSN 183

Query: 158 Q--------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A +N+P +   PV+ +N+  +     
Sbjct: 184 SRKIRAGKGKMRNRRYRQRRGPLVVYAKDEGIVRAFKNVPGVETCPVESLNLLQLAPGGH 243

Query: 192 L----VLSKSAIEALEDRF 206
           +    + ++SAI AL+  +
Sbjct: 244 VGRFIIWTESAIAALDSVY 262


>gi|125557447|gb|EAZ02983.1| hypothetical protein OsI_25124 [Oryza sativa Indica Group]
          Length = 405

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGR 54
           +SV+ L+G+    +   ++++E +F    +  ++  V R  S  KR   +       +  
Sbjct: 9   VSVKALEGDMATDNSSSLALAE-VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTS 67

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   +R +A
Sbjct: 68  AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVA 127

Query: 110 LRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  AL+            + I       +VI +      KT   +   +           
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKA 187

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   +I           A RN+P +++  V+ +N+ D+  
Sbjct: 188 KDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAP 247

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ ++SA + LE+ +
Sbjct: 248 GGHLGRFVIWTESAFKKLEEVY 269


>gi|323164883|gb|EFZ50674.1| 50S ribosomal protein L4 [Shigella sonnei 53G]
          Length = 102

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164
           +   AL+  LS+    + ++V++    +  KTK L  + + + L + LII G +LD N  
Sbjct: 1   MYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLF 59

Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           LAARN+  +++    GI+   ++   K+V++  A++ +E+  
Sbjct: 60  LAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 101


>gi|66525285|ref|XP_392071.2| PREDICTED: 60S ribosomal protein L4 isoform 1 [Apis mellifera]
          Length = 429

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 82/257 (31%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +++     E  G       +F    +  I+  V +  S   R        +  +  +E  
Sbjct: 10  VTIYTDKNESSGDTISLPAVFKAPIRPDIVNFVHQQVSKNSRQPYCVSKEAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRINVNQKRYAMVSA 129

Query: 114 L----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
           +          S      +I    +V+ + + +  KTK  V   R +   N +       
Sbjct: 130 IAASGVPALVQSKGHMVQEIPELPLVVSDKIQEYNKTKQAVIFLRRIKAWNDIQKVYKSQ 189

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D+  + A RNIP ++L+ +  +N+  +       
Sbjct: 190 RFRAGKGKMRNRRRIQRRGPLIVYHQDQGIRKAFRNIPGVDLMNINKMNLLKLAPGGHVG 249

Query: 192 --LVLSKSAIEALEDRF 206
             ++ +KSA E L+  +
Sbjct: 250 RFVIWTKSAFEKLDALY 266


>gi|164690933|dbj|BAF98649.1| ribosomal protein L4 [Solea senegalensis]
          Length = 369

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G   V   +F    +  ++  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGESSGKNVVMPAVFKAPIRPDVVNFVHTNMRKNSRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++  ++G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPCERGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGXRIEEIPEVPLVVEDKVEHYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D     A RNIP I L  V  +N+  +       
Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCIIYNQDAGIIKAFRNIPGITLQNVNKLNLLRLAPGGHIG 247

Query: 192 --LVLSKSAIEALEDRF 206
             L+ ++SA   L++ +
Sbjct: 248 RFLIWTESAFRKLDELY 264


>gi|58259908|ref|XP_567364.1| Ras2 [Cryptococcus neoformans var. neoformans JEC21]
 gi|134116412|ref|XP_773160.1| hypothetical protein CNBJ1550 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255781|gb|EAL18513.1| hypothetical protein CNBJ1550 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229414|gb|AAW45847.1| Ras2, putative [Cryptococcus neoformans var. neoformans JEC21]
          Length = 363

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 84/259 (32%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V +  GE  G + +   +F    +  ++ +V +  +  +R        +  +  +E
Sbjct: 5   PTVTVWSATGEASGSLPLP-AVFTAPIRLDVVQQVHKSIAKNRRQAYAVAENAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          + +  R  A+ 
Sbjct: 64  SWGTGRAVARIPRVGGGGTQRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRYAVA 123

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL+     + +              +V+ + V    KTK  V   + +     +     
Sbjct: 124 SALAASALPSLVLARGHRIEQIQEVPLVLSSSVESTEKTKAAVELLKTVAAYPDISKVSN 183

Query: 158 Q--------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A +N+P +   PV+ +N+  +     
Sbjct: 184 SRKIRAGKGKMRNRRYRQRRGPLVVYAKDEGIVRAFKNVPGVETCPVESLNLLQLAPGGH 243

Query: 192 L----VLSKSAIEALEDRF 206
           +    + ++SAI AL+  +
Sbjct: 244 VGRFIIWTESAIAALDSVY 262


>gi|307775447|ref|NP_001182746.1| ribosomal protein L4-like [Oryctolagus cuniculus]
          Length = 425

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 247 GRFCIWTESAFRKLDDLY 264


>gi|19113302|ref|NP_596510.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe 972h-]
 gi|19858781|sp|P35679|RL4A_SCHPO RecName: Full=60S ribosomal protein L4-A; AltName: Full=L2
 gi|3810827|emb|CAA21788.1| 60S ribosomal protein L2 [Schizosaccharomyces pombe]
          Length = 363

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 79/259 (30%), Gaps = 54/259 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +S+ + DG           +F    +  ++  V    +  KR        +  +  +E
Sbjct: 6   PTVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAE 65

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A+ 
Sbjct: 66  SWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIS 125

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            A++            + I       +V+D+ V    KTK  V   + +     ++    
Sbjct: 126 SAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVAN 185

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A RNIP + ++ V+ +N+  +     
Sbjct: 186 SRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGH 245

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ +KSA   L+  F
Sbjct: 246 LGRFVIWTKSAFGLLDSVF 264


>gi|313103625|pdb|3IZ5|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
 gi|315113297|pdb|3IZR|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
 gi|34393487|dbj|BAC83047.1| putative 60S ribosomal protein L4/L1 [Oryza sativa Japonica Group]
 gi|125599330|gb|EAZ38906.1| hypothetical protein OsJ_23326 [Oryza sativa Japonica Group]
 gi|215686382|dbj|BAG87643.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737561|dbj|BAG96691.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737607|dbj|BAG96737.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737716|dbj|BAG96846.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215765851|dbj|BAG87548.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 405

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGR 54
           +SV+ L+G+    +   ++++E +F    +  ++  V R  S  KR   +       +  
Sbjct: 9   VSVKALEGDMATDNSSSLALAE-VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTS 67

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   +R +A
Sbjct: 68  AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVA 127

Query: 110 LRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  AL+            + I       +VI +      KT   +   +           
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKA 187

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   +I           A RN+P +++  V+ +N+ D+  
Sbjct: 188 KDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAP 247

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ ++SA + LE+ +
Sbjct: 248 GGHLGRFVIWTESAFKKLEEVY 269


>gi|297606826|ref|NP_001059041.2| Os07g0180900 [Oryza sativa Japonica Group]
 gi|255677563|dbj|BAF20955.2| Os07g0180900 [Oryza sativa Japonica Group]
          Length = 425

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGR 54
           +SV+ L+G+    +   ++++E +F    +  ++  V R  S  KR   +       +  
Sbjct: 29  VSVKALEGDMATDNSSSLALAE-VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTS 87

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   +R +A
Sbjct: 88  AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVA 147

Query: 110 LRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  AL+            + I       +VI +      KT   +   +           
Sbjct: 148 VASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKA 207

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   +I           A RN+P +++  V+ +N+ D+  
Sbjct: 208 KDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAP 267

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ ++SA + LE+ +
Sbjct: 268 GGHLGRFVIWTESAFKKLEEVY 289


>gi|55926194|ref|NP_001007480.1| 60S ribosomal protein L4 [Gallus gallus]
 gi|53135834|emb|CAG32462.1| hypothetical protein RCJMB04_25p23 [Gallus gallus]
          Length = 421

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 81/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  ++  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGEASGKNVTLP-AVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      +I    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEIPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIRAFRNIPGITLLDVNKLNLLRLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 247 GRFCIWTESAFRKLDDLY 264


>gi|15825945|pdb|1JJ2|C Chain C, Fully Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution
 gi|20150990|pdb|1KQS|C Chain C, The Haloarcula Marismortui 50s Complexed With A
           Pretranslocational Intermediate In Protein Synthesis
 gi|22218924|pdb|1K8A|E Chain E, Co-Crystal Structure Of Carbomycin A Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|22218958|pdb|1K9M|E Chain E, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
           Subunit Of Haloarcula Marismortui
 gi|22219001|pdb|1KD1|E Chain E, Co-Crystal Structure Of Spiramycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|22219328|pdb|1M1K|E Chain E, Co-Crystal Structure Of Azithromycin Bound To The 50s
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|24159023|pdb|1M90|E Chain E, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
           Sparsomycin Bound To The 50s Ribosomal Subunit
 gi|34811120|pdb|1K73|E Chain E, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 gi|34811150|pdb|1KC8|E Chain E, Co-Crystal Structure Of Blasticidin S Bound To The 50s
           Ribosomal Subunit
 gi|34811189|pdb|1N8R|E Chain E, Structure Of Large Ribosomal Subunit In Complex With
           Virginiamycin M
 gi|34811219|pdb|1NJI|E Chain E, Structure Of Chloramphenicol Bound To The 50s Ribosomal
           Subunit
 gi|37927903|pdb|1Q7Y|E Chain E, Crystal Structure Of Ccdap-Puromycin Bound At The Peptidyl
           Transferase Center Of The 50s Ribosomal Subunit
 gi|37927938|pdb|1Q81|E Chain E, Crystal Structure Of Minihelix With 3' Puromycin Bound To
           A- Site Of The 50s Ribosomal Subunit.
 gi|37927974|pdb|1Q82|E Chain E, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
           The 50s Ribosomal Subunit
 gi|37928010|pdb|1Q86|E Chain E, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
           Simultaneously At Half Occupancy To Both The A-Site And
           P- Site Of The The 50s Ribosomal Subunit.
 gi|39654675|pdb|1QVF|C Chain C, Structure Of A Deacylated Trna Minihelix Bound To The E
           Site Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|39654708|pdb|1QVG|C Chain C, Structure Of Cca Oligonucleotide Bound To The Trna Binding
           Sites Of The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|50513472|pdb|1S72|C Chain C, Refined Crystal Structure Of The Haloarcula Marismortui
           Large Ribosomal Subunit At 2.4 Angstrom Resolution
 gi|55670538|pdb|1W2B|C Chain C, Trigger Factor Ribosome Binding Domain In Complex With 50s
 gi|66360786|pdb|1YHQ|C Chain C, Crystal Structure Of Azithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360819|pdb|1YI2|C Chain C, Crystal Structure Of Erythromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360852|pdb|1YIJ|C Chain C, Crystal Structure Of Telithromycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360885|pdb|1YIT|C Chain C, Crystal Structure Of Virginiamycin M And S Bound To The
           50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360918|pdb|1YJ9|C Chain C, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
           Haloarcula Marismortui Containing A Three Residue
           Deletion In L22
 gi|66360951|pdb|1YJN|C Chain C, Crystal Structure Of Clindamycin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|66360984|pdb|1YJW|C Chain C, Crystal Structure Of Quinupristin Bound To The G2099a
           Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753128|pdb|1VQ4|C Chain C, The Structure Of The Transition State Analogue "daa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753160|pdb|1VQ5|C Chain C, The Structure Of The Transition State Analogue "raa" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753192|pdb|1VQ6|C Chain C, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753224|pdb|1VQ7|C Chain C, The Structure Of The Transition State Analogue "dca" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753255|pdb|1VQ8|C Chain C, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 gi|83753287|pdb|1VQ9|C Chain C, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
           Sparsomycin Bound To The Large Ribosomal Subunit Of
           Haloarcula Marismortui
 gi|83753318|pdb|1VQK|C Chain C, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
           The Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753349|pdb|1VQL|C Chain C, The Structure Of The Transition State Analogue "dcsn"
           Bound To The Large Ribosomal Subunit Of Haloarcula
           Marismortui
 gi|83753380|pdb|1VQM|C Chain C, The Structure Of The Transition State Analogue "dan" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753412|pdb|1VQN|C Chain C, The Structure Of Cc-Hpmn And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|83753443|pdb|1VQO|C Chain C, The Structure Of Ccpmn Bound To The Large Ribosomal
           Subunit Haloarcula Marismortui
 gi|83753475|pdb|1VQP|C Chain C, The Structure Of The Transition State Analogue "rap" Bound
           To The Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|145580175|pdb|2OTJ|C Chain C, 13-Deoxytedanolide Bound To The Large Subunit Of
           Haloarcula Marismortui
 gi|145580206|pdb|2OTL|C Chain C, Girodazole Bound To The Large Subunit Of Haloarcula
           Marismortui
 gi|171848839|pdb|2QA4|C Chain C, A More Complete Structure Of The The L7L12 STALK OF THE
           Haloarcula Marismortui 50s Large Ribosomal Subunit
 gi|208435497|pdb|2QEX|C Chain C, Negamycin Binds To The Wall Of The Nascent Chain Exit
           Tunnel Of The 50s Ribosomal Subunit
 gi|228311914|pdb|3CXC|C Chain C, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
           To The 50s Ribosomal Subunit Of H. Marismortui
          Length = 246

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 52/251 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           ++ ++ +LDG   G + + + +F    +  ++ + +R     ++        +  +  +E
Sbjct: 1   MQATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
              +G     Q    +    ++ V Q   G  A  P         L  K R LA+R AL+
Sbjct: 60  SFGSGRG---QAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALA 116

Query: 116 DKFCSNDI-------------MVIDNLVSKECKTKYLVTRF------------------- 143
               ++ +             +V+ +      KT+ +V+                     
Sbjct: 117 ATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKA 176

Query: 144 -----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVL 194
                R         I     D     AARN+   ++     +N  D+          V 
Sbjct: 177 GQGSARGRKYRRPASILFVTSDEPST-AARNLAGADVATASEVNTEDLAPGGAPGRLTVF 235

Query: 195 SKSAIEALEDR 205
           ++SA+  + +R
Sbjct: 236 TESALAEVAER 246


>gi|313125791|ref|YP_004036061.1| LSU ribosomal protein l4p [Halogeometricum borinquense DSM 11551]
 gi|312292156|gb|ADQ66616.1| LSU ribosomal protein L4P [Halogeometricum borinquense DSM 11551]
          Length = 248

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 96/255 (37%), Gaps = 58/255 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           ++ ++R+L+G+D G + + E +F    +  ++ R +      ++        +  +  +E
Sbjct: 1   MQATIRDLNGDDAGTLDLPE-VFETAYRPDLIKRAVLAAQANRKQAYGADPYAGMRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115
              +G  M       R    ++ V     G KA  P         + KK R LA+R AL+
Sbjct: 60  SLGSGRGM---SHDPRENGRARRVPHAVSGRKAHPPKAEKDQGKEINKKERKLAVRSALA 116

Query: 116 ----------DKFCSND-----IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD 160
                          ++     ++V D+      KTK +V+   +L +     ++  + +
Sbjct: 117 ATTDAELVAERGHRFDEDLDLPLVVSDDFE-DLVKTKEVVSLLESLGVHAD--VEHSEDN 173

Query: 161 RNFQ--------------------------LAARNIPNINLLPVQGINVYDIL---RCSK 191
           +  +                           AARN+  +++     +N  D+       +
Sbjct: 174 KKVRAGQGKARGRKYKRPKSILFVTSEEPSKAARNLAGVDVATASNVNAEDLAPGTHAGR 233

Query: 192 L-VLSKSAIEALEDR 205
           L + ++SA+E + DR
Sbjct: 234 LTIFTESAVEEVADR 248


>gi|291222349|ref|XP_002731171.1| PREDICTED: ribosomal protein L4-like [Saccoglossus kowalevskii]
          Length = 400

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 77/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           ++V +   E  G       +F    +  I+  V        R   + SK       +E  
Sbjct: 10  INVYSEKNELSGTTITLPAVFKAPIRPDIVNFVHANLRKNSRQPYAVSKAAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRRVNVNQKRYAMCSA 129

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +VI + V +  KTK  V   R     + +       
Sbjct: 130 IASTGIPALIMSKGHRIEEIPEVPLVIADKVQEFKKTKEAVAFLRKFKAWSDIQKVYKSK 189

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 190 RMRAGKGKMRNRRRIQRLGPCIIYDQDNGLTRAFRNIPGITLLNVSKLNLLRVAPGGHVG 249

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 250 RFCIWTESAFRKLDNLY 266


>gi|40889023|gb|AAA60281.2| ribosomal protein L4 [Homo sapiens]
          Length = 426

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 78/256 (30%), Gaps = 53/256 (20%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  ++  V        R        +  + R+E  
Sbjct: 8   ISVYSEKGESSGKNVTLPAVFKAPIRPDMVNFVHTNLRKNNRQPYAVSELAGHQTRAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +     +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEFPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 -----------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL-- 192
                                    D     A RNIP I LL V  +N+  +     +  
Sbjct: 188 RMRAGKGKMRNRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGR 247

Query: 193 --VLSKSAIEALEDRF 206
             + ++SA   L++ +
Sbjct: 248 FCIWTESAFRKLDELY 263


>gi|54261775|ref|NP_998272.1| 60S ribosomal protein L4 [Danio rerio]
 gi|29436531|gb|AAH49520.1| Ribosomal protein L4 [Danio rerio]
 gi|45767784|gb|AAH67580.1| Ribosomal protein L4 [Danio rerio]
 gi|94733359|emb|CAK04709.1| ribosomal protein L4 [Danio rerio]
 gi|148726470|emb|CAN88105.1| ribosomal protein L4 [Danio rerio]
          Length = 375

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G   V   +F    +  I+  V       KR        +  +  +E  
Sbjct: 8   ISVYSEKGETSGKNVVMPAVFRAPIRPDIVNFVHTNMRKNKRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVNQKRYAMCSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     ++      +I    +V+D+ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPSLVMAKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I L  V  +++  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRKGPCIIYNEDNGVTRAFRNIPGITLQSVSRLDLLKLAPGGHIG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++ A   L+D +
Sbjct: 248 RFCIWTEGAFRKLDDLY 264


>gi|260942525|ref|XP_002615561.1| hypothetical protein CLUG_04443 [Clavispora lusitaniae ATCC 42720]
 gi|238850851|gb|EEQ40315.1| hypothetical protein CLUG_04443 [Clavispora lusitaniae ATCC 42720]
          Length = 244

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 13/200 (6%)

Query: 20  SEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKS 79
             +      ++  L   + +++ + R+G      + +  ++  K++ QKGTGRAR    +
Sbjct: 42  PTNFLNQPLRRDFLWSAVVYEADKARVGSGYVPTKGDKWFSNRKLHPQKGTGRARVGDAN 101

Query: 80  VSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKY 138
                 G KA G   P      LP K+ S A + A SD++ +  + VI    + E ++  
Sbjct: 102 SPIRDNGLKAHGIKAPHDWSTRLPSKIYSRAFQTAFSDQYRNGKLFVIGGAQANEGESNV 161

Query: 139 LVTRFRALDLS------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI 186
           +  ++   D              + L I   Q D   +  A      ++L  + + V D+
Sbjct: 162 VDFKYEYPDQMRQFVEAHDLEHLHLLFITDGQRDNLLKATADMGKKCDVLVKEAVEVRDL 221

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           L+ +++ + +SA+     ++
Sbjct: 222 LKANRIFIEQSALNWFVSQY 241


>gi|77409634|ref|ZP_00786307.1| ribosomal protein L4 [Streptococcus agalactiae COH1]
 gi|77171757|gb|EAO74953.1| ribosomal protein L4 [Streptococcus agalactiae COH1]
          Length = 113

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 55/112 (49%)

Query: 95  IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALII 154
               + L +KVR LAL+   S K   +  + ++NL     KT    +   AL + + +++
Sbjct: 1   RSYGYKLLQKVRRLALKSVYSAKVAEDKFVAVENLSFAAPKTAEFASVLSALSIDSKVLV 60

Query: 155 DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
              + +    L+ARN+PN+ +      +V DI+   KL+++K AI  +E   
Sbjct: 61  ILEEGNEFAALSARNLPNVTVATATTASVLDIVNADKLLVTKEAISTIEGVL 112


>gi|55378383|ref|YP_136233.1| 50S ribosomal protein L4P [Haloarcula marismortui ATCC 43049]
 gi|57015333|sp|P12735|RL4_HALMA RecName: Full=50S ribosomal protein L4P; AltName: Full=Hl6;
           AltName: Full=Hmal4
 gi|188596004|pdb|3CC2|C Chain C, The Refined Crystal Structure Of The Haloarcula
           Marismortui Large Ribosomal Subunit At 2.4 Angstrom
           Resolution With Rrna Sequence For The 23s Rrna And
           Genome-Derived Sequences For R-Proteins
 gi|188596035|pdb|3CC4|C Chain C, Co-Crystal Structure Of Anisomycin Bound To The 50s
           Ribosomal Subunit
 gi|188596066|pdb|3CC7|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2487u
 gi|188596097|pdb|3CCE|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535a
 gi|188596128|pdb|3CCJ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation C2534u
 gi|188596159|pdb|3CCL|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation U2535c. Density For Anisomycin Is
           Visible But Not Included In Model.
 gi|188596190|pdb|3CCM|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2611u
 gi|188596221|pdb|3CCQ|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488u
 gi|188596252|pdb|3CCR|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation A2488c. Density For Anisomycin Is
           Visible But Not Included In The Model.
 gi|188596283|pdb|3CCS|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482a
 gi|188596314|pdb|3CCU|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2482c
 gi|188596345|pdb|3CCV|C Chain C, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
           23s Rrna Mutation G2616a
 gi|188596376|pdb|3CD6|C Chain C, Co-Cystal Of Large Ribosomal Subunit Mutant G2616a With
           Cc- Puromycin
 gi|194368707|pdb|3CPW|C Chain C, The Structure Of The Antibiotic Linezolid Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|206581910|pdb|3CMA|C Chain C, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
           Large Ribosomal Subunit Of Haloarcula Marismortui
 gi|206581943|pdb|3CME|C Chain C, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
           Ribosomal Subunit Of Haloarcula Marismortui
 gi|228312144|pdb|3G4S|C Chain C, Co-Crystal Structure Of Tiamulin Bound To The Large
           Ribosomal Subunit
 gi|228312200|pdb|3G6E|C Chain C, Co-Crystal Structure Of Homoharringtonine Bound To The
           Large Ribosomal Subunit
 gi|228312236|pdb|3G71|C Chain C, Co-Crystal Structure Of Bruceantin Bound To The Large
           Ribosomal Subunit
 gi|290790038|pdb|3I55|C Chain C, Co-Crystal Structure Of Mycalamide A Bound To The Large
           Ribosomal Subunit
 gi|290790069|pdb|3I56|C Chain C, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
           Large Ribosomal Subunit
 gi|148802|gb|AAA86860.1| ribosomal protein L6 [Haloarcula marismortui]
 gi|55231108|gb|AAV46527.1| 50S ribosomal protein L4 [Haloarcula marismortui ATCC 43049]
          Length = 246

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 52/251 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           ++ ++ +LDG   G + + + +F    +  ++ + +R     ++        +  +  +E
Sbjct: 1   MQATIYDLDGNTDGEVDLPD-VFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
              +G     Q    +    ++ V Q   G  A  P         L  K R LA+R AL+
Sbjct: 60  SFGSGRG---QAHVPKQDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALA 116

Query: 116 DKFCSNDI-------------MVIDNLVSKECKTKYLVTRF------------------- 143
               ++ +             +V+ +      KT+ +V+                     
Sbjct: 117 ATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKA 176

Query: 144 -----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVL 194
                R         I     D     AARN+   ++     +N  D+          V 
Sbjct: 177 GQGSARGRKYRRPASILFVTSDEPST-AARNLAGADVATASEVNTEDLAPGGAPGRLTVF 235

Query: 195 SKSAIEALEDR 205
           ++SA+  + +R
Sbjct: 236 TESALAEVAER 246


>gi|156536919|ref|XP_001608023.1| PREDICTED: similar to ribosomal protein L4 [Nasonia vitripennis]
          Length = 431

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           ++V     E  G       +F    +  ++  V +  S   R   S SK       +E  
Sbjct: 10  ITVFTEKSEASGETISLPSVFKAPIRPDVVNFVHQQVSKNSRQPYSVSKEAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNVNQKRYAIVSA 129

Query: 114 L----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ- 158
           +          S      ++    +V+ + + +  KTK  V   R +   N +       
Sbjct: 130 IAASGVPALVQSKGHMIQEVPEFPLVVSDKIQEYNKTKQAVIFLRRIKAWNDIQKVYKSQ 189

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D+  + A RNIP ++L+ +  IN+  +       
Sbjct: 190 RFRAGKGKMRNRRRIQRRGPLIVYGNDQGIRKAFRNIPGVDLMNINKINLLKLAPGGHVG 249

Query: 192 --LVLSKSAIEALEDRF 206
             ++ +KSA E L+  +
Sbjct: 250 RFVIWTKSAFEKLDALY 266


>gi|328849864|gb|EGF99037.1| hypothetical protein MELLADRAFT_50803 [Melampsora larici-populina
           98AG31]
          Length = 377

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 84/258 (32%), Gaps = 57/258 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58
           ++VR+  G   G + +   +F +  +  ++A + +  +   R   + S     +  +E  
Sbjct: 7   VNVRSPAGASSGTVPLP-AVFTVPIRNDVIAAIHKNLAKNNRQPYAVSSKAGEQTSAESW 65

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G G  R    +      GG+ F P             K R  A   A
Sbjct: 66  GTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKIWRKWHVKTNLKQRRYATVSA 125

Query: 114 LS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           ++               +K     ++V D + S   KT+      +AL     ++     
Sbjct: 126 IAATAVPSLVLARGHRIEKVQEIPLVVSDEIES-LQKTRDAANVLKALAAQPDVLKVSSS 184

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D+    A RN+P + ++ V  +N+  +     +
Sbjct: 185 RTMRAGKGKMRGRRYRQRRGPLIIYNEDKGITRAFRNLPGVEIISVHRLNLLQLAPGGHI 244

Query: 193 ----VLSKSAIEALEDRF 206
               + + SA   L+D +
Sbjct: 245 GRFCIWTASAFAQLDDLY 262


>gi|194704098|gb|ACF86133.1| unknown [Zea mays]
          Length = 404

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 85/261 (32%), Gaps = 59/261 (22%)

Query: 4   LSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55
           +SV+ L+G+       I++   +F    +  ++    +  S  KR   +       +  +
Sbjct: 9   VSVKALEGDMVTDAPGIALPP-VFGAPIRPDVVRFTHKLLSCNKRQPYAVSRRAGHQTSA 67

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +      GG+ F P          +   +R +A+
Sbjct: 68  ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRRVNVNLRRVAV 127

Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA----------- 145
             AL+        +   + I       +VI +      KT   +   +            
Sbjct: 128 ASALAATAVPALVQARGHRIETVPEMPLVISDSAESIEKTSQALKILKQVGAYADAEKAK 187

Query: 146 ----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                                  ++           A RN+P +++  V+ +N+ D+   
Sbjct: 188 DSVGIRPGKGKMRNRRYINRKGPLVVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPG 247

Query: 190 SK----LVLSKSAIEALEDRF 206
                 ++ ++SA + LE+ +
Sbjct: 248 GHLGRFVIWTESAFKKLEEVY 268


>gi|226497070|ref|NP_001147047.1| 60S ribosomal protein L4 [Zea mays]
 gi|195606864|gb|ACG25262.1| 60S ribosomal protein L4 [Zea mays]
          Length = 404

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 85/261 (32%), Gaps = 59/261 (22%)

Query: 4   LSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55
           +SV+ L+G+       I++   +F    +  ++    +  S  KR   +       +  +
Sbjct: 9   VSVKALEGDMVTDAPGIALPP-VFGAPIRPDVVRFTHKLLSCNKRQPYAVSRRAGHQTSA 67

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +      GG+ F P          +   +R +A+
Sbjct: 68  ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRRVNVNLRRVAV 127

Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA----------- 145
             AL+        +   + I       +VI +      KT   +   +            
Sbjct: 128 ASALAATAVPALVQARGHRIETVPEMPLVISDSAESIEKTSQALKILKQVGAYTDAEKAK 187

Query: 146 ----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                                  ++           A RN+P +++  V+ +N+ D+   
Sbjct: 188 DSVGIRPGKGKMRNRRYINRKGPLVVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPG 247

Query: 190 SK----LVLSKSAIEALEDRF 206
                 ++ ++SA + LE+ +
Sbjct: 248 GHLGRFVIWTESAFKKLEEVY 268


>gi|284165493|ref|YP_003403772.1| 50S ribosomal protein L4P [Haloterrigena turkmenica DSM 5511]
 gi|284015148|gb|ADB61099.1| 50S ribosomal protein L4P [Haloterrigena turkmenica DSM 5511]
          Length = 250

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 93/257 (36%), Gaps = 60/257 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +E +VR+LDG + G + +   +F    +  ++AR +R     ++        +  +  +E
Sbjct: 1   MEATVRDLDGAEAGSVELP-AVFETNYRPDLIARAVRVAQANRKQDYGADEFAGLRTPAE 59

Query: 57  VAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRH 112
              +G  M     Q+G GR       V Q   G KA  P        ++  K + LA+R 
Sbjct: 60  SFGSGRGMAHVPRQEGRGR------RVPQTVKGRKAHPPKAEKDQSESINTKAKKLAVRS 113

Query: 113 ALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFR-------------- 144
           A++    +  +              +V+D+      KT+ +V                  
Sbjct: 114 AIAATTDAEIVAERGHEFDGDLELPVVVDDEFEDLQKTREVVDFLEATGLADDIERADEG 173

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRC 189
                           +   I+     +     AARN+   ++     +N  D+    + 
Sbjct: 174 RSVRSGQGKARGRKYKTPTSILFVTSSETGPSRAARNLAGADVTTAAEVNAEDLAPGAQP 233

Query: 190 SKL-VLSKSAIEALEDR 205
            +L V ++SA+E + DR
Sbjct: 234 GRLTVWTESALEEVADR 250


>gi|294496016|ref|YP_003542509.1| 50S ribosomal protein L4P [Methanohalophilus mahii DSM 5219]
 gi|292667015|gb|ADE36864.1| LSU ribosomal protein L4P [Methanohalophilus mahii DSM 5219]
          Length = 253

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 88/255 (34%), Gaps = 52/255 (20%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRS 55
           M+  ++ ++ G  KG I++ + +F    +  ++ R +     ++         +  +  +
Sbjct: 1   MVTANILDISGNSKGEITLPD-VFEEIYRPDLIKRTVLSSQSKRYQPYGPKMYAGMETSA 59

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHAL 114
               +G  +               V Q  GG +   P P       + KK + LA+R A+
Sbjct: 60  VSWGSGRGVAQIPRLVNGSR-VARVPQAVGGRRTHPPKPEADRTEKVNKKEKRLAVRSAI 118

Query: 115 SDKFCSNDI------------MVIDNLVSKECKTKYLVTRFR------------------ 144
           +    +  +            +V ++ +    KT  ++   +                  
Sbjct: 119 AATINAELVKGRGHVCDSSLPIVAEDALQDVEKTAEVIKFLKTAGAYDDVLRAKDSRSIR 178

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSKL 192
                           ++     +     +ARN+  +++  V  +   ++L    +  +L
Sbjct: 179 AGKGKMRGRKYKHKKSVLIVAGSESPIFRSARNLSGVDVTTVDSLYT-ELLAPGAKAGRL 237

Query: 193 -VLSKSAIEALEDRF 206
            V ++SAI +LED F
Sbjct: 238 TVWTESAISSLEDMF 252


>gi|254449313|ref|ZP_05062758.1| ribosomal protein L4/L1 family [gamma proteobacterium HTCC5015]
 gi|198261072|gb|EDY85372.1| ribosomal protein L4/L1 family [gamma proteobacterium HTCC5015]
          Length = 101

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 106 RSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQL 165
              A+    S+      ++V++++     KTK LV + + ++L + L++     D N  L
Sbjct: 1   YRGAMASIFSELVRQERLVVVEDITVDAPKTKQLVGKLKEMELESVLLV-SETDDINLYL 59

Query: 166 AARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           AARN+ ++++  V G++  D++R  K++++  +++ +E++ K
Sbjct: 60  AARNLNSVDVTDVAGLSPVDLIRFDKVLITVDSLKRVEEQLK 101


>gi|8488|emb|CAA31759.1| unnamed protein product [Drosophila melanogaster]
          Length = 407

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 10  VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           A+          S     + +    +V+ + V K  KTK  V   R L +   +      
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D   + A RNIP I  + V  +NV  +      
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNVLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFARLNDLF 267


>gi|302832173|ref|XP_002947651.1| component of cytosolic 80S ribosome and 60S large subunit [Volvox
           carteri f. nagariensis]
 gi|300266999|gb|EFJ51184.1| component of cytosolic 80S ribosome and 60S large subunit [Volvox
           carteri f. nagariensis]
          Length = 410

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 77/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV N++  +    +    +F    +  I+  +    +  KR        +  +  +E  
Sbjct: 8   VSVINIETGEAAEQTALPAVFTAPIRPDIVRTIHTNMAKNKRQAYAVFMKAGHQTAAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 68  GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKVNVNQKRYAVCSA 127

Query: 114 LS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFR--------------- 144
           L+            + I       +V+ + V    KT   +   +               
Sbjct: 128 LAASALPSLVMARGHRIEQVPEVPLVLSDAVEGLKKTSKALEILKKIGALPDVEKSKDSK 187

Query: 145 -----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                         +     +     D     A RN+P + +  V  +N+  +     L 
Sbjct: 188 SLRSGKGKLRNRRYVMRKGPLVVFANDEGISKAFRNLPGVEVTSVDRLNLLQLAPGGHLG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + SKSA E L+  F
Sbjct: 248 RFCIWSKSAFEKLDKIF 264


>gi|61654616|gb|AAX48834.1| L4/L1 [Suberites domuncula]
          Length = 357

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 83/257 (32%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V + +G+D    ++   +F    +  ++  V       KR        +  +  +E  
Sbjct: 6   VTVFSDEGKDVAQTTLP-AVFKAPIRTDVIQFVHTNMRKNKRQPYAVSTKAGHQTSAESW 64

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          + +  R  A+  A
Sbjct: 65  GTGRAVARIPRVRGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWHRRINQNQRRYAMCSA 124

Query: 114 LSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFR--------------- 144
           L+       +              +V+DN + K  KTK  +   +               
Sbjct: 125 LAATALPALVTARGHRIDNIGEVPLVVDNAIEKLTKTKDAIKLLKALNAYPDVQKSKDSK 184

Query: 145 -----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                         +     +     D+    A RN+P + LL V  +N+  +     + 
Sbjct: 185 KVRPGKGKMRNRRYVQRKGPLVIYNEDQGITRAFRNLPGVELLKVDRMNLLLLAPGGHIG 244

Query: 193 ---VLSKSAIEALEDRF 206
              + S+ A E L+  +
Sbjct: 245 RFCIWSRGAFEKLDALY 261


>gi|300710376|ref|YP_003736190.1| 50S ribosomal protein L4P [Halalkalicoccus jeotgali B3]
 gi|299124059|gb|ADJ14398.1| 50S ribosomal protein L4P [Halalkalicoccus jeotgali B3]
          Length = 250

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 56/255 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++ +  +LDGE+ G I + E +F    +  ++ R +      ++        S  +  +E
Sbjct: 1   MQATTLDLDGEEAGEIDLPE-VFETTFRPDLIKRAVLAAQANRQQDYGADPFSGKRTSAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
              TG  M     +         V Q  GG +A  P         +  K R LA R A++
Sbjct: 60  SLGTGRGMARVPRSNGQGK---RVPQAVGGRRAHPPKAEKDRTLDINTKERKLATRSAIA 116

Query: 116 DKFCSN---------------DIMVIDNLVSKECKTKYLVTRFR---------------- 144
               ++                ++V D    +  KTK +++                   
Sbjct: 117 ATTDTDLVAERGHRFGEDVSLPLVVSDEFE-ELIKTKEVLSFLESVGIADDIERAEDGRS 175

Query: 145 ----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191
                             I+     +     AARN+  +++   + ++  D+       +
Sbjct: 176 VRAGRGKTRGRKYKQPKSILFVTSSEAGPSKAARNLAGVDVATAREVSAEDLAPGTHAGR 235

Query: 192 L-VLSKSAIEALEDR 205
           L V ++SAIE +  R
Sbjct: 236 LTVWTESAIEEVAGR 250


>gi|171692867|ref|XP_001911358.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946382|emb|CAP73183.1| unnamed protein product [Podospora anserina S mat+]
          Length = 361

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 75/264 (28%), Gaps = 60/264 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V   DG+  G   V   +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 5   PTVTVLGADGKATGATEVLPKVFSAPIRPDIVKHVHTGMAKNKRQPYSVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRS---- 107
              TG    ++    G G  R    +       G+ F P          + +  +     
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKVNQGQKRFATA 124

Query: 108 ------------LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR----------- 144
                       +A  H +S       +++         KT   V   +           
Sbjct: 125 SALAASAVAPLLMARGHQVST-VPEVPLVIDSAAFGVASKTAAAVGLLKAVGAGPELEKV 183

Query: 145 -----------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDI 186
                                   L++     D +      RNIP +   PV  +N+  +
Sbjct: 184 KASKKLRAGKGKLRGRRHRQRRGPLVVYSPSTDGKELVQGFRNIPGVETSPVDALNLLQL 243

Query: 187 LRCSK----LVLSKSAIEALEDRF 206
                    ++ + +AI+ L+  +
Sbjct: 244 APGGHLGRFVIWTSAAIKELDAVY 267


>gi|323452815|gb|EGB08688.1| hypothetical protein AURANDRAFT_60076 [Aureococcus anophagefferens]
          Length = 379

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 73/266 (27%), Gaps = 61/266 (22%)

Query: 1   MIE----LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KS 51
           M E    +SV + +G       +   +F    +  ++  V    +   R   +       
Sbjct: 1   MAETRPVVSVYSPEGAVASTTPLP-AVFNAPIRPDLVRFVHTNIAKNARQAYAVNMKAGH 59

Query: 52  KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVR 106
           +  +E   TG    ++   +G G  R    +      GG+ F P          +    R
Sbjct: 60  QTSAESWGTGRAVSRIPRVQGGGTQRSGQGAFGNMCRGGRMFAPTKTWRKWHRKVNLNER 119

Query: 107 SL---------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR------- 144
                              R  + D      ++V  ++     KTK  V   +       
Sbjct: 120 RYAICSAIAASACPPLVMARGHVVDAVPEMPLVVDGSVEGSVAKTKAAVALLKALGAEAD 179

Query: 145 --------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                                       ++     D     A RN+P ++L  +  +N+ 
Sbjct: 180 ADKCAASKKLRAGKGKMRNRRYVGRKGPLVIYEDKDAELPRAVRNLPGVDLCHIDRLNLL 239

Query: 185 DILRCSKL----VLSKSAIEALEDRF 206
            +     +    V +  A   L+  +
Sbjct: 240 LLAPGGHVGRFCVWTSGAFAKLDALY 265


>gi|307205264|gb|EFN83644.1| 60S ribosomal protein L4 [Harpegnathos saltator]
          Length = 424

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 81/260 (31%), Gaps = 60/260 (23%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V     E  G       +F    +  ++  V +  S   R        +  +  +E  
Sbjct: 9   ITVYTDKNEASGDAISLPSVFKAPIRPDVVNFVHQQISKNSRQPYCVSKEAGHQTSAESW 68

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  AL  A
Sbjct: 69  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRINVNQKRYALVSA 128

Query: 114 L----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ- 158
           +          S      ++    +V+ N +    KTK  V   R + + N +       
Sbjct: 129 IAASGVPALVQSKGHMIQEVPEFPLVVSNKIETYNKTKQAVIFLRRIKVWNDIQKVYKSQ 188

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILR----- 188
                                     D     A RNIP ++L+ +  +N   +L+     
Sbjct: 189 RFRAGKGKMRNRRRIQRRGPLIVYGKDEGLCKAFRNIPGVDLMNINKMN---LLKMAPGG 245

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +KSA E L+  +
Sbjct: 246 HVGRFVIWTKSAFEQLDALY 265


>gi|260794820|ref|XP_002592405.1| hypothetical protein BRAFLDRAFT_118418 [Branchiostoma floridae]
 gi|229277624|gb|EEN48416.1| hypothetical protein BRAFLDRAFT_118418 [Branchiostoma floridae]
          Length = 394

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 80/257 (31%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V N  GE   V      +     +  I+  V        R        +  +  +E  
Sbjct: 10  ITVHNEKGESTSVTVTMPAVMKAPIRPDIVQSVHANVRKNSRQPYCVSKLAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    R  A+  A
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNINQRRYAICCA 129

Query: 114 LS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
           LS            + I       +V+ + V +  KTK  V   R L   N +       
Sbjct: 130 LSASALPALVMAKGHRIEEIPEVPLVVGDKVQEMKKTKEAVQLLRKLKAWNDIQKVYNSK 189

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D     A RNIP I LLPV  +N+  I       
Sbjct: 190 RIRAGKGKMRNRRFVKKRGPCIIYDKDNGIVRAFRNIPGITLLPVDKLNLLKIAPGGHLG 249

Query: 192 --LVLSKSAIEALEDRF 206
             L+ ++SAI+ L+  +
Sbjct: 250 RFLIWTESAIQKLDALY 266


>gi|27694877|gb|AAH41744.1| Rpl4-b-prov protein [Xenopus laevis]
          Length = 375

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R   + SK       +E  
Sbjct: 12  ISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 72  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     +     A RNIP I LL V  +N+  +     + 
Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+D +
Sbjct: 252 RFCIWTESAFRKLDDLY 268


>gi|15678034|ref|NP_275148.1| 50S ribosomal protein L4P [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|3122746|sp|O26111|RL4_METTH RecName: Full=50S ribosomal protein L4P
 gi|2621050|gb|AAB84523.1| ribosomal protein L4 (E.coli ) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 254

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 96/257 (37%), Gaps = 54/257 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +++ V +L+GE    + + E IF  + +  ++ R +      +         +  +  ++
Sbjct: 1   MKIKVYSLEGEAIDEMELPE-IFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQ 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  + +         ++  V Q  GG +A  P P    H  + +K R LA+R A++
Sbjct: 60  SYGAGRGVAMVPRIKNGSRAA-FVPQAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVA 118

Query: 116 DKFCSN---------------DIMVIDN--LVSKECKTKYLVTRFRALDLSNALI----- 153
                +                ++V D   ++ +   T+ +  +   +D           
Sbjct: 119 ATARKDLVEARGHRIENVPQLPLVVDDELSMIKRTADTREVFRKLGIMDDIVRAREGKKI 178

Query: 154 ------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSK 191
                             +     D+     ARN P ++++ V+ +N  ++L       +
Sbjct: 179 RAGKGKMRGRKYRTPRGPLIVVGDDKGITRGARNHPGVDVVRVENLNA-ELLAPGTHPGR 237

Query: 192 L-VLSKSAIEALEDRFK 207
           L V ++SAIE L++ F+
Sbjct: 238 LTVFTRSAIEKLDELFQ 254


>gi|320580201|gb|EFW94424.1| 60S ribosomal protein L4-B [Pichia angusta DL-1]
          Length = 701

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 82/261 (31%), Gaps = 56/261 (21%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
            ++SV +LDG+     S+    +F    +  I+  V    +  KR        +  +  +
Sbjct: 4   PQVSVVSLDGKATSS-SLPLPAVFKAPIRPDIVHSVFTRVNKNKRQAYAVAENAGHQTSA 62

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +      GG+ F P          +    +  A 
Sbjct: 63  ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKIWRRWHVKVNLNEKRYAT 122

Query: 111 RHALSDKFCSNDIMVIDNLVSKEC--------------KTKYLVTRFRALDLSNALIIDG 156
             A++     + ++   + V +                KTK  V   +A+     ++   
Sbjct: 123 ASAIAATAVQSLVLARGHRVEEIPQIPLVVSSDLESVTKTKEAVAVLKAVGAHKDVVKVI 182

Query: 157 CQL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                        D+    A RN+P +   PV  + +  +    
Sbjct: 183 KSKKMRAGKGKLRGRRFTQRRGPLIVYGEDKGLVKAFRNLPGVETAPVTALGLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRFK 207
                ++ ++SA  AL+  ++
Sbjct: 243 HLGRFVIWTESAFAALDSVYQ 263


>gi|313200082|ref|YP_004038740.1| 50S ribosomal protein L4/l1e [Methylovorus sp. MP688]
 gi|312439398|gb|ADQ83504.1| ribosomal protein L4/L1e [Methylovorus sp. MP688]
          Length = 98

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 52/97 (53%)

Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169
           +R  LS+    + + VI+  V +  KTK LV + + L     +++     D N  L+ARN
Sbjct: 1   MRSILSELVRQDRLSVIEEFVVETPKTKALVEKIKGLGYGEGVLVLVDGFDENLYLSARN 60

Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +PN+ ++  Q  +   ++R   +V +K+A++ LE+  
Sbjct: 61  LPNVLVVEAQYADPVSLVRFPNVVATKAAVKKLEEML 97


>gi|304314254|ref|YP_003849401.1| 50S ribosomal protein L1e [Methanothermobacter marburgensis str.
           Marburg]
 gi|302587713|gb|ADL58088.1| 50S ribosomal protein L1e [Methanothermobacter marburgensis str.
           Marburg]
          Length = 254

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 94/262 (35%), Gaps = 64/262 (24%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC---------SKSK 52
           +++ V +L+GE    + + E IF  + +  ++ R +      +             + +K
Sbjct: 1   MKIKVYSLEGEAIDEMELPE-IFNEEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAK 59

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALR 111
                        ++ G+  A      V Q  GG +A  P P    H  + +K R LA+R
Sbjct: 60  SYGAGRGVAMVPRIKNGSRAA-----FVPQAVGGRRAHPPRPQKNYHERINRKERRLAIR 114

Query: 112 HALSDKFCSN---------------DIMVIDN--LVSKECKTKYLVTRF----------- 143
            A++     +                ++V D    + +   T+ +  +            
Sbjct: 115 SAVAATAMRDLVEARGHRIENVPQVPLVVDDELSRIKRTADTREVFRKLGIMDDIVRAKE 174

Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--- 187
                        R        +I     D+   L ARN P ++++ V+ +N  ++L   
Sbjct: 175 GKKIRAGKGKMRGRKYRTPKGPLIVVGD-DKGIALGARNHPGVDVVTVENLNA-ELLAPG 232

Query: 188 -RCSKL-VLSKSAIEALEDRFK 207
               +L V ++SAIE LE  F+
Sbjct: 233 THPGRLTVFTRSAIEKLEGLFQ 254


>gi|288931511|ref|YP_003435571.1| 50S ribosomal protein L4P [Ferroglobus placidus DSM 10642]
 gi|288893759|gb|ADC65296.1| 50S ribosomal protein L4P [Ferroglobus placidus DSM 10642]
          Length = 251

 Score = 88.2 bits (217), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 54/255 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++  V +L GE    I +    F  + +  I+ + +      +R        + +    E
Sbjct: 1   MKAKVYSLTGEVVEEIELPAA-FNEEFRPDIIRKAVHAIQSHRRQPYGPNPLAGTDYAWE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
               G            R  +  V Q  GG +A  P         + KK    ALR AL+
Sbjct: 60  NWGPGYGYARVPRWKLGRR-AVVVPQAVGGRRAHPPKVQKKWAEKINKKEMRKALRSALA 118

Query: 116 DKFCSN--------------DIMVIDNLVSKECKTKYLVTRFR--------------ALD 147
                                I+V D    K  KTK ++  F+                 
Sbjct: 119 ATINEEIVRARNHVFEGELPKIVVDDFENLK--KTKEIIEVFKAIGVYADVERAKERKRY 176

Query: 148 LSNALIIDGCQLDR------------NFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
            +    + G +               +   AA+N+  ++++  + +NV  +       +L
Sbjct: 177 RAGKGKMRGRRFKTKKSVLVVVSKVCDAMKAAKNLAGVDVVLAKDLNVELLAPGGHAGRL 236

Query: 193 -VLSKSAIEALEDRF 206
            V +KSAI  L +R 
Sbjct: 237 TVYTKSAIAQLGERL 251


>gi|328768374|gb|EGF78420.1| hypothetical protein BATDEDRAFT_17297 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 370

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V +  G   G +++   +F    +  I+  V    +  KR        +  +  +   
Sbjct: 7   VTVFSEKGSTIGTVTLP-AVFTAPIRDDIVNFVHTNVAKNKRQAYAVSVKAGHQTSAISW 65

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G+G  R    +      GG+ F P          + +  R  A   A
Sbjct: 66  GTGRAVARIPRVSGSGTHRAGQAAFGNMCRGGRMFAPTKVWRKWHVKVNQNQRRFATASA 125

Query: 114 LSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRA-------------- 145
           L+     + +              +V+ + V    KTK  +   +               
Sbjct: 126 LAASALPSLVLARGHKIEQIDEVPLVVSSAVEAFTKTKAAIALLKQLKAYSDVEKVVNSK 185

Query: 146 ------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                               +     +     A  NIP +    V  +N+  +       
Sbjct: 186 KLRAGVGKLRNRRHTQRRGPLVIYDNNEGIARAFSNIPGVETCSVNALNILQLAPGGHVG 245

Query: 192 --LVLSKSAIEALEDRF 206
             ++ +++A E L+  +
Sbjct: 246 RFVIWTQAAFEKLDALY 262


>gi|72005577|ref|XP_783473.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115955810|ref|XP_001190853.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 385

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 73/258 (28%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           ++V N   E  G  +++   +F    +  I+           R        +  +  +E 
Sbjct: 10  VTVYNEKNEVTGTNVTLP-AVFKAPIRPDIVNYAHTNMRKNSRQPYAVKRIAGHQTSAES 68

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P               +  A+  
Sbjct: 69  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKIWRKWHTRTNISQKRFAMCS 128

Query: 113 ALSDKFCSNDIMVIDNLVSKEC--------------KTKYLVTRFRALDLSNALIIDGC- 157
           AL+       +M   +++                  KTK  V   +       +      
Sbjct: 129 ALAASAVPALVMSKGHMIMGTPEVPLVVSDKVQDFKKTKEAVYFLKRFKAWEDIKKVYKS 188

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP + LL V  +N+  +     +
Sbjct: 189 RRMRAGKGKMRNRRFVRRLGPLVVYDQDNGITRAFRNIPGVTLLQVSRLNLLRLAPGGHV 248

Query: 193 ----VLSKSAIEALEDRF 206
               V ++SA   L+  +
Sbjct: 249 GRFCVWTESAFNKLDGLY 266


>gi|62083421|gb|AAX62435.1| ribosomal protein L4 [Lysiphlebus testaceipes]
          Length = 429

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 80/257 (31%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V     E          +F    +  I+  +    S  KR        +  +  +E  
Sbjct: 10  VTVFTEKNEASKETISLPAVFKAPIRPDIVNTIHVQISKNKRQPYCVSEKAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  AL   
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKPWRRWHRKINVNQKRYALVSA 129

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159
                     +S      D+    +V+++ + +  KTK  V   R +     +       
Sbjct: 130 IAASGVPALVMSKGHMIQDVPEFPLVVEDKIQEYTKTKQAVIFLRRIKAWTDVKKVYNSK 189

Query: 160 --------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D+  + A RNIP ++L+ V  +N+  +       
Sbjct: 190 RLRAGKGKMRNRRHVQRRGPLIIYGQDKGLKKAFRNIPGVDLMNVNKMNLLKLAPGGHVG 249

Query: 192 --LVLSKSAIEALEDRF 206
             ++ +KSA + L+  +
Sbjct: 250 RFVIWTKSAFDKLDALY 266


>gi|311334504|emb|CBN08633.1| ribosomal protein L4 [Microcosmus squamiger]
          Length = 359

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 76/256 (29%), Gaps = 60/256 (23%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  G   G       +F    +  I+  V    S   R        +  +  +E  
Sbjct: 8   VSVYSEKGVASGTTITLPAVFKAPIRPDIVNFVHTNVSKNHRQPYAVKSIAGEQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ + P               R  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQAAFGNMCRGGRMYAPTKTWRRWHRKCNTNQRRYAMCSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S       I    +V+++ V +  KTK  V   + L     +       
Sbjct: 128 LAASALPALIMSKGHKIEQIPEVPLVVEDKVQQYKKTKEAVLLLKKLKAWEDIKKVKDSK 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILR----- 188
                                     D     A RNIP I L+ V  +   D+L+     
Sbjct: 188 RIRAGKGKMRNRRRTMRRGPCVIYDKDEGISKAFRNIPGITLISVDRL---DLLKIAPGG 244

Query: 189 --CSKLVLSKSAIEAL 202
                L+ ++SA ++L
Sbjct: 245 HVGRFLIWTESAFKSL 260


>gi|254292179|ref|ZP_04962949.1| ribosomal protein L4 [Vibrio cholerae AM-19226]
 gi|150421908|gb|EDN13885.1| ribosomal protein L4 [Vibrio cholerae AM-19226]
          Length = 102

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164
           +   A++  LS+      ++V++N   +  KTK LV + + L+L++ LI+ G ++D N  
Sbjct: 1   MYRGAMKSILSELVRQERLIVVENFSVEAPKTKALVAKLKELELNDVLIVTG-EVDENLF 59

Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           LAARN+  +++  V GI+   ++   K++++ +A++ +E+  
Sbjct: 60  LAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAVKQVEEML 101


>gi|289621746|emb|CBI51657.1| unnamed protein product [Sordaria macrospora]
          Length = 361

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 75/264 (28%), Gaps = 60/264 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +++   DG+  G   V   +F    +  I+  V    +  KR        +  +  +E
Sbjct: 5   PTVTIIGADGKATGATEVLPKVFGAPIRPDIVKHVHTGMAKNKRQPYSVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKVNQGQKRFATA 124

Query: 112 ----------------HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR----------- 144
                           H +S       +++     S   KT   +   +           
Sbjct: 125 SALAASAAAPLLMARGHQVSS-VPEVPLVIDSAAFSGANKTANALALLKAVGAGADVEKA 183

Query: 145 -----------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDI 186
                                   L++   + D ++     RNI  +   PV  +N+  +
Sbjct: 184 KASKKLRAGKGKLRGRRHRQRRGPLVVYSAETDGKDLVQGFRNIAGVETSPVDALNLLQL 243

Query: 187 LRCSKL----VLSKSAIEALEDRF 206
                L    V + +AI+ L+  +
Sbjct: 244 APGGHLGRFIVWTSAAIKELDAVY 267


>gi|21702612|gb|AAM76008.1|AF481103_18 ribosomal protein L4 [Candidatus Tremblaya princeps]
          Length = 198

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 3/172 (1%)

Query: 32  ILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
           +L +VL       R  CS  + R EV+++  K + QKG GRAR    S   +RGGG+AF 
Sbjct: 22  LLRQVLNAYHASLRPSCSTQRSRGEVSHSTRKPWRQKGLGRARAGMTSSPLWRGGGRAFP 81

Query: 92  PVPIIGV-HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN 150
                     + K++  L+L   +        + ++D L     KT+ L  R  +   S 
Sbjct: 82  SRTAASRLVRINKRMARLSLHVQIVRAARQGRLAIVDALRIAPSKTREL--RCASAQPST 139

Query: 151 ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
            +++   +L  N   AARN+  ++++  +GI+       S++V+++ A E +
Sbjct: 140 MVVVGKSELCYNAYRAARNVSGLSIVAQRGISPRAFHLSSRIVMTRKAAEDI 191


>gi|282164891|ref|YP_003357276.1| 50S ribosomal protein L4P [Methanocella paludicola SANAE]
 gi|282157205|dbj|BAI62293.1| 50S ribosomal protein L4P [Methanocella paludicola SANAE]
          Length = 250

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 85/249 (34%), Gaps = 49/249 (19%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           +E ++ +  G+    + V E +F    +  ++ + +      +         + +   + 
Sbjct: 1   MEANILDKSGKKASTMEVPE-VFNEPFRPDVIKKAVLAAQANRLQPYGPDRTAGTLTSAH 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
              +G              ++  V+Q +GG  A  P P       +  K R LA+R A +
Sbjct: 60  SWGSGRGAAHVPRLTNGSRAA-RVTQAKGGRSAHAPNPNKDYSEKINDKERILAIRSAAA 118

Query: 116 ------------DKFCSNDIMVIDNLVSKECKTKYLVTRF-------------------- 143
                        KF     +++ + +    KTK +V                       
Sbjct: 119 ATMNKELVKARGYKFEGELPLIVSDDIESFTKTKEVVELLTAIGLEADLERAKIKQVRGG 178

Query: 144 -----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL-VL 194
                         ++     D+   +AARNIP  +++ +  +N   +    +  +L V 
Sbjct: 179 RGKMRGRQYKKKVGVLIVVGEDKGIVMAARNIPGCDVVTLDEVNTELLAPGTQAGRLTVW 238

Query: 195 SKSAIEALE 203
           S+SA++ +E
Sbjct: 239 SESALKMME 247


>gi|195108985|ref|XP_001999073.1| GI24311 [Drosophila mojavensis]
 gi|193915667|gb|EDW14534.1| GI24311 [Drosophila mojavensis]
          Length = 401

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 10  VSVYTEKNEAVKEKNICLPAVFKAPIRPDVVNEVHQLMRRNNRQAYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           A+          S     + +    +V+ + V K  KTK  V   R + +   +      
Sbjct: 130 AIAASGVPALVQSKGHIIDGVSEFPLVVSDEVQKLQKTKQAVVFLRRMKIWADIQKVYKS 189

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETISVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFARLNDLF 267


>gi|292656684|ref|YP_003536581.1| 50S ribosomal protein L4.eR [Haloferax volcanii DS2]
 gi|291370536|gb|ADE02763.1| ribosomal protein L4.eR [Haloferax volcanii DS2]
          Length = 248

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 86/253 (33%), Gaps = 54/253 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           ++ ++R+L+G+D G I + E +F    +  ++ R +      ++        ++ +  +E
Sbjct: 1   MQATIRDLNGDDAGSIDLPE-VFETAYRPDLIKRAVIAAQANRKQPYGADPYARLRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115
              +G  M               V     G +A  P         +  K R LA+R AL+
Sbjct: 60  SMGSGRGMSHDPRQNGVAR---RVPHAVSGRRAHPPKAEKDQGKEINTKERKLAVRSALA 116

Query: 116 ----------DKFCSND-----IMVIDNLV------------------------SKECKT 136
                          +D     ++V D+                           +  K 
Sbjct: 117 ATTDPELVAERGHRFDDDVELPLVVSDDFEDLVKTQEVVDLLQSLGVSDDIERSEENKKV 176

Query: 137 KYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
           K    + R    +    I     D     AARN+  +++     ++  D+       +L 
Sbjct: 177 KSGQGKLRGRKYTRPKSILFVTADEP-SKAARNLAGVDVATAANVSAEDLAPGTHAGRLT 235

Query: 193 VLSKSAIEALEDR 205
           + ++SA+E + +R
Sbjct: 236 LFTESALEEVAER 248


>gi|298674801|ref|YP_003726551.1| 50S ribosomal protein L4P [Methanohalobium evestigatum Z-7303]
 gi|298287789|gb|ADI73755.1| 50S ribosomal protein L4P [Methanohalobium evestigatum Z-7303]
          Length = 253

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 89/255 (34%), Gaps = 50/255 (19%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
           M +++V +L G  K  I +   +F    +  ++ + +      +         +     +
Sbjct: 1   MSKVNVIDLSGNVKSEIDLP-QVFNESLRPDLIKKAVLSSQANRLQPYGPYARAGLNTSA 59

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHAL 114
               +G  + +      +  ++  V Q  GG +A  P P       + KK + LA+R A+
Sbjct: 60  VSWGSGRGVAMVPRLANSSRAA-RVPQSVGGRRAHPPKPETDRTEKINKKEKKLAIRSAI 118

Query: 115 S------------DKFCSNDIMVIDNLVSKECKTKYLVTRFR------------------ 144
           +              F     +V D+ +    KTK +V  F+                  
Sbjct: 119 AATTNPELAKKRGHVFDVELPVVADDELENLTKTKDVVNFFKTAGLYKDVLRAKEGKHVR 178

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
                           ++     + +   AARN+P + +  +  +N   +       +L 
Sbjct: 179 AGKGKSRGRKYRQKKSVLIVVSDNNSVIKAARNLPGVEVATIGSLNAELLAPGTHAGRLT 238

Query: 193 VLSKSAIEALEDRFK 207
           V ++SAI +LE  ++
Sbjct: 239 VWTESAISSLEGMYR 253


>gi|226329482|ref|ZP_03805000.1| hypothetical protein PROPEN_03391 [Proteus penneri ATCC 35198]
 gi|225202668|gb|EEG85022.1| hypothetical protein PROPEN_03391 [Proteus penneri ATCC 35198]
          Length = 102

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164
           +   AL+  LS+    + ++V++    +  KTK L  + + + L +  +I    LD N  
Sbjct: 1   MYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDV-LIITADLDENLY 59

Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           LAARN+  +++     I+   ++   K+V++  A++ +E+  
Sbjct: 60  LAARNLYKVDVRDAATIDPVSLIAFDKVVMTADAVKQVEEML 101


>gi|310765597|gb|ADP10547.1| 50S ribosomal protein L4 [Erwinia sp. Ejp617]
          Length = 102

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164
           +   AL+  LS+    + ++V++    +  KTK LV + + + L + LII G +L+ N  
Sbjct: 1   MYRGALKSILSELVRQDRLIVVEKFSLEAPKTKLLVEKLKDMALEDVLIITG-ELEENLF 59

Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           LAARN+  +++     I+   ++   K+V++  A++ +E+  
Sbjct: 60  LAARNLYKVDVRDAAAIDPVSLIAFDKVVMTADAVKQVEEML 101


>gi|126277469|ref|XP_001376078.1| PREDICTED: similar to ribosomal protein L4 [Monodelphis domestica]
          Length = 435

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  G+  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGDVSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    KTK  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|193704510|ref|XP_001945463.1| PREDICTED: 60S ribosomal protein L4-like isoform 1 [Acyrthosiphon
           pisum]
 gi|328707724|ref|XP_003243482.1| PREDICTED: 60S ribosomal protein L4-like isoform 2 [Acyrthosiphon
           pisum]
          Length = 459

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV +   E+ G       +F    +  +++ V    S   R   + SK       +E  
Sbjct: 10  VSVYSEKNEETGETVALATVFKAPIRPDVVSFVHDNVSKNSRQPYAVSKLAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  A    
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTRVWRRWHRKINVTQKRYATVSA 129

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153
                     +S      ++    +V+ + + +  KTK     + R +A      +I   
Sbjct: 130 IAASGVPALVMSKGHLVQEVPEFPLVVSDKIQEYTKTKQATIFLHRIKAWKDIQKVIKSR 189

Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               +     D+  + A RNIP ++L+ ++ +N+  +     + 
Sbjct: 190 RLRAGKGKMRNRRHVQRRGPLIVYSKDQGLRKAFRNIPGVDLINIRKLNLLHLAPGGHVG 249

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA + L+D +
Sbjct: 250 RFIIWTQSAFQKLDDLY 266


>gi|327400871|ref|YP_004341710.1| 50S ribosomal protein L4P [Archaeoglobus veneficus SNP6]
 gi|327316379|gb|AEA46995.1| 50S ribosomal protein L4P [Archaeoglobus veneficus SNP6]
          Length = 252

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 82/250 (32%), Gaps = 50/250 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++ +V NL+GE    I +   +F  + +  I+ + +      +R        S     +E
Sbjct: 1   MKANVLNLNGEVVEEIELP-VVFKEELRPDIIRKAVHAIQSHRRQPYGPNPLSGINYAAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
               G               +  V Q   G +A  P         + +K    ALR A++
Sbjct: 60  NWGPGHGYARVPRLKTGSR-AVKVPQAVKGRRAHPPKVQKKWEEKINRKEMRKALRSAIA 118

Query: 116 DKFCSNDI----MVIDNLVSKE--------CKTKYLVTRFR------------------- 144
               +  +     V D  V K          KTK +   F+                   
Sbjct: 119 ATAIAEVVKQRNHVFDGDVPKIVVDDFEGLSKTKEVAEVFKAIGVYSDVVRAAERKRVRA 178

Query: 145 -------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL-V 193
                     +    ++       +   AARN+P ++++  + +NV  +       +L V
Sbjct: 179 GKGKMRGRRYIGKKSVLVVVSKPCSVMNAARNLPGVDVVLAKDLNVELLAPGTHPGRLTV 238

Query: 194 LSKSAIEALE 203
            +KSA+  LE
Sbjct: 239 WTKSALNVLE 248


>gi|164655483|ref|XP_001728871.1| hypothetical protein MGL_4038 [Malassezia globosa CBS 7966]
 gi|159102757|gb|EDP41657.1| hypothetical protein MGL_4038 [Malassezia globosa CBS 7966]
          Length = 373

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 81/259 (31%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++VR +DG   G + +   +F    +  ++  +    +  KR        +  +  +E
Sbjct: 5   PTVNVRGIDGAASGSLPLP-AVFNAPIRPDVVQAIHSNLAKNKRQPYAVASNAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG  F P            +  R  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMARGGHMFAPTRVWRRWFIKTNQTQRRYATA 123

Query: 112 HALSDK----------FCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL+                +I    +++ N +    KTK  +   +AL+  + +I    
Sbjct: 124 SALAATALPALVLARGHRVEEIEEVPLIVSNEIESFTKTKQAIAALKALNAYDDVIKVSN 183

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A RN+P + +  V  +N+  +     
Sbjct: 184 SRKIRAGIGKLRNRRHTQRRGPLVIYNQDNGIVKAFRNLPGVEIASVHSLNLLQLAPGGH 243

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ ++ A + L+  F
Sbjct: 244 LGRFVIWTEDAFKQLDKIF 262


>gi|313217111|emb|CBY38286.1| unnamed protein product [Oikopleura dioica]
 gi|313225068|emb|CBY20861.1| unnamed protein product [Oikopleura dioica]
          Length = 350

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 83/258 (32%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57
           +SV   DG      I++   +F    +  ++  V    +   R   + +     +  +E 
Sbjct: 8   VSVYGADGSATAEQINLP-AVFKAPIRTDVVQFVHSNIAKNARQPYAVAGNAGEQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G +R  + +      GG+ F P          +    R  A   
Sbjct: 67  WGTGRAVARIPRVRGGGTSRSGAAAFGNMCRGGRMFNPNKTWRNWHRRVNVTQRRYATVS 126

Query: 113 AL------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFR-------------- 144
           A+      S       ++        VID+      KTK  V+  +              
Sbjct: 127 AIAATGIPSLAMAKGHVVSRVPEFPLVIDSGAEAIKKTKAAVSVLKAVGAIDDVNRVKET 186

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                          +     +   Q D     A RNIP + LLPV  +N+  +     +
Sbjct: 187 RRQRAGRGKMRNRRRVQKRGPLVVYQNDDGIVQAMRNIPGVTLLPVDQLNLLKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               V + +A +AL+  +
Sbjct: 247 GRFTVYTANAFKALDTVY 264


>gi|326493892|dbj|BAJ85408.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 459

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV +   E+ G       +F    +  +++ V    S   R   + SK       +E  
Sbjct: 10  VSVYSEKNEETGETVALATVFKAPIRPDVVSFVHDNVSKNSRQPYAVSKLAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  A    
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTRVWRRWHRKINVTQKRYATVSA 129

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKY---LVTRFRALDLSNALI--- 153
                     +S      ++    +V+ + + +  KTK     + R +A      +I   
Sbjct: 130 IAASGVPALVMSKGHLVQEVPEFPLVVSDKIQEYTKTKQATIFLHRIKAWKDIQKVIKSR 189

Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               +     D+  + A RNIP ++L+ ++ +N+  +     + 
Sbjct: 190 RLRAGKGKMRNRRHVQRRGPLIVYSKDQGLRKAFRNIPGVDLINIRKLNLLHLAPGGHVG 249

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA + L+  +
Sbjct: 250 RFIIWTQSAFQKLDSLY 266


>gi|159473354|ref|XP_001694804.1| ribosomal protein L4, component of cytosolic 80S ribosome and 60S
           large subunit [Chlamydomonas reinhardtii]
 gi|158276616|gb|EDP02388.1| ribosomal protein L4 [Chlamydomonas reinhardtii]
          Length = 410

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 79/258 (30%), Gaps = 56/258 (21%)

Query: 4   LSVRNLD-GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           + V +++ GE    +++   +F    +  I+  +    +  KR        +  +  +E 
Sbjct: 8   VEVHSIETGEKAAQVALP-AVFTAPIRPDIVRTIHTNMAKNKRQAYAVFMKAGHQTAAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKINVNQKRYAVVS 126

Query: 113 ALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFR-------------- 144
           AL+       +M              V+D+ V    KT   +   +              
Sbjct: 127 ALAASALPALVMARGHKIEQVPMVPLVLDDAVEGVKKTSKALEILKKIGALPDVEKSKDS 186

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                          +     +     D     A RN+P + +  V  +N+  +     L
Sbjct: 187 KSLRAGKGKMRNRRYVMRKGPLVVFANDEGISKAFRNLPGVEVTSVDRLNLLQLAPGGHL 246

Query: 193 ----VLSKSAIEALEDRF 206
               + SKSA E L+  F
Sbjct: 247 GRFCIWSKSAFEKLDKVF 264


>gi|308496497|ref|XP_003110436.1| hypothetical protein CRE_05535 [Caenorhabditis remanei]
 gi|308243777|gb|EFO87729.1| hypothetical protein CRE_05535 [Caenorhabditis remanei]
          Length = 243

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 1/122 (0%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQ 67
            ++ E  G++ +  DIF   P+  IL R L WQS  + +  +K   ++E+   G K + Q
Sbjct: 100 TIEDEKLGLVDLHPDIFRATPRIDILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKPWPQ 159

Query: 68  KGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVI 126
           K TGRA   S    QF  GG A G   P    + LP  VR   L  AL+ K   +D+ ++
Sbjct: 160 KKTGRAHVGSIRAPQFIRGGFANGVRGPRTWFYMLPDAVRIQGLCVALTLKHAQDDLHIV 219

Query: 127 DN 128
           DN
Sbjct: 220 DN 221


>gi|318087124|gb|ADV40154.1| putative ribosomal protein L4 [Latrodectus hesperus]
          Length = 317

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 81/257 (31%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           ++V N + E  G       ++    +  I+  V    +  +R   + SK       +E  
Sbjct: 10  ITVYNDNNEPSGKAITLPVVYRAPIRPDIVNYVHMNMAKNRRHPYAVSKEAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    R  A+   
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQRRYAICSA 129

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS---------- 149
                     +S      +I    +V+ + V +  KTK  V   R +             
Sbjct: 130 IAATGVPALVMSKGHRIEEIPEVPLVVSDKVQEYTKTKQAVQFLRKIKAWSDIQKVYSSK 189

Query: 150 ----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                               +   + D+    A RNIP I  + V+ +N+  +       
Sbjct: 190 RFRAGKGKMRNRRRIQRLGPVIVYRKDQGLTRAFRNIPGIETINVEKLNLLRLAPGGHVG 249

Query: 192 --LVLSKSAIEALEDRF 206
             ++ ++SA   L+  +
Sbjct: 250 RFVIWTESAFRRLDAIY 266


>gi|313227627|emb|CBY22774.1| unnamed protein product [Oikopleura dioica]
          Length = 351

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 83/258 (32%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57
           +SV   DG      I++   +F    +  ++  V    +   R   + +     +  +E 
Sbjct: 8   VSVYGADGSATAEQINLP-AVFKAPIRTDVVQFVHSNIAKNARQPYAVAGNAGEQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G +R  + +      GG+ F P          +    R  A   
Sbjct: 67  WGTGRAVARIPRVRGGGTSRSGAAAFGNMCRGGRMFNPNKTWRNWHRRVNVTQRRYATVS 126

Query: 113 AL------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFR-------------- 144
           A+      S       ++        VID+      KTK  V+  +              
Sbjct: 127 AIAATGIPSLAMAKGHVVNNVPEFPLVIDSSAEALKKTKAAVSVLKKVGAIDDVNRVKET 186

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                          +     +   + D     A RNIP + LLPV  +N+  +     +
Sbjct: 187 RRFRAGRGKMRNRRRVQKRGPLVVYKNDDGIVQAMRNIPGVTLLPVDQLNLLKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + +  A +AL++ +
Sbjct: 247 GRFTIYTSEAFKALDNVY 264


>gi|170291101|ref|YP_001737917.1| 50S ribosomal protein L4P [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170175181|gb|ACB08234.1| Ribosomal protein L4 [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 265

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 93/260 (35%), Gaps = 58/260 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +E+ V NL+GE  G I +   +F L  +Q I+ RV   Q   +         +  +  +E
Sbjct: 4   MEVPVYNLNGEVIGRIELPP-LFELDVRQDIIRRVYLSQLTARIQPQGRDPLAGLRTSAE 62

Query: 57  VAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG---VHALPKKVRSLAL 110
               G  +      KG G       + +    GG      P         + KK R LA+
Sbjct: 63  SLGVGHGIARVPRVKGRGYPAAGRAARAVMAVGGA-KTKAPRSWKVVWERVNKKERRLAI 121

Query: 111 RHALSDKFCSNDI-------------MVIDNLVSKECKTKYL------------------ 139
             A++       +             +V+ + +    KT  L                  
Sbjct: 122 GSAIAATSHPELVGARHRIPEGIALPIVVSDDIESIAKTSDLHKLLKKLGLEEELERCKR 181

Query: 140 ----------VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187
                       R R    +   +I   + D   +LA+RNIP ++ + ++ ++V  +   
Sbjct: 182 RFGKIRAGRGKMRGRVRQRARGPLIIYSREDSPLKLASRNIPGVDAVSLRNLSVMHLAPG 241

Query: 188 -RCSKL-VLSKSAIEALEDR 205
            +  +L + S+S+I ALE+ 
Sbjct: 242 GKPGRLTIWSESSIRALEEV 261


>gi|899428|emb|CAA28844.1| ribosomal protein L1b (396 AA) [Xenopus laevis]
 gi|224829|prf||1202260B ribosomal protein L1b
          Length = 396

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R   + SK       +E  
Sbjct: 7   ISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 126

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 127 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 186

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     +     A RNIP I LL V  +N+  +     + 
Sbjct: 187 RMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVG 246

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+D +
Sbjct: 247 RFCIWTESAFRKLDDLY 263


>gi|289579899|ref|YP_003478365.1| 50S ribosomal protein L4P [Natrialba magadii ATCC 43099]
 gi|289529452|gb|ADD03803.1| 50S ribosomal protein L4P [Natrialba magadii ATCC 43099]
          Length = 250

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 91/254 (35%), Gaps = 54/254 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +E +VR+LDG D G + +   +F  + +  ++AR +R     ++        +  +  +E
Sbjct: 1   MEATVRDLDGSDAGSVDLP-AVFDTQYRPDLIARAVRVAQANRKQDYGADEFAGKRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
              +G  M       R    ++ V Q   G KA  P        ++  K + LA+R A++
Sbjct: 60  SFGSGRGM---AHVPRQDGRARRVPQAVKGRKAHPPKAEKDWSESINTKEKKLAVRSAIA 116

Query: 116 DKFCSNDI--------------MVIDNLVSKECKTKYLVTRFR----------------- 144
               +  +              +V+ +      KT+ +V                     
Sbjct: 117 ATTDAEIVAERGHAFDDDAEIPVVVSDEFEDLHKTQEVVEFLEAAGLEDDIKRADEGRSV 176

Query: 145 ---------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSKL 192
                        +   I+     +     AARN+   ++     +N  D+    +  +L
Sbjct: 177 RAGQGKARGRKYKTPTSILFVTSSETGPSRAARNLAGADVATAAEVNAEDLAPGAQPGRL 236

Query: 193 -VLSKSAIEALEDR 205
            V ++SA+E + DR
Sbjct: 237 TVWTESALEEVADR 250


>gi|156353812|ref|XP_001623105.1| predicted protein [Nematostella vectensis]
 gi|156209766|gb|EDO31005.1| predicted protein [Nematostella vectensis]
          Length = 358

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 82/257 (31%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           ++V N +GE  G  ++   +F    +  ++  V    +  KR   + +K       +E  
Sbjct: 7   ITVFNENGESAGQTTLP-AVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESW 65

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +  + R  A+  A
Sbjct: 66  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSA 125

Query: 114 LSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFR--------------- 144
           L+       IM              VI + +    KT   V   +               
Sbjct: 126 LAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSK 185

Query: 145 -----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                         +     +     D+  + A RN+P + L  V  +N+  +     L 
Sbjct: 186 KIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLG 245

Query: 193 ---VLSKSAIEALEDRF 206
              + S+ A E L+  +
Sbjct: 246 RFIIWSQGAFEKLDAIY 262


>gi|293332597|ref|NP_001168309.1| hypothetical protein LOC100382075 [Zea mays]
 gi|223947375|gb|ACN27771.1| unknown [Zea mays]
          Length = 403

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 59/261 (22%)

Query: 4   LSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55
           +SV+ L+G+       I++   +F    +  ++    +  S  KR   +       +  +
Sbjct: 9   VSVKALEGDMVTDAPGIALPP-VFGAPIRPDVVRFTHKLLSCNKRQPYAVSRRAGHQTSA 67

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +      GG+ F P          +   +R +A+
Sbjct: 68  ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRRVNINLRRVAV 127

Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA----------- 145
             AL+        +   + I       +VI +      KT   +   +            
Sbjct: 128 ASALAATAVPALVQARGHRIESVPEMPLVISDSAESIEKTSQALKILKQIGAHADAEKAK 187

Query: 146 ----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                                  +I           A RN+P +++  V+ +N+ D+   
Sbjct: 188 DSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPG 247

Query: 190 SK----LVLSKSAIEALEDRF 206
                 ++ ++SA   LE+ +
Sbjct: 248 GHLGRFVIWTQSAFNKLEEVY 268


>gi|147898584|ref|NP_001082721.1| 60S ribosomal protein L4-B [Xenopus laevis]
 gi|292495032|sp|P02385|RL4B_XENLA RecName: Full=60S ribosomal protein L4-B; AltName: Full=L1B
 gi|32822849|gb|AAH54956.1| Rpl4-b protein [Xenopus laevis]
          Length = 401

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R   + SK       +E  
Sbjct: 12  ISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 72  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     +     A RNIP I LL V  +N+  +     + 
Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+D +
Sbjct: 252 RFCIWTESAFRKLDDLY 268


>gi|257387877|ref|YP_003177650.1| ribosomal protein L4/L1e [Halomicrobium mukohataei DSM 12286]
 gi|257170184|gb|ACV47943.1| ribosomal protein L4/L1e [Halomicrobium mukohataei DSM 12286]
          Length = 247

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 89/252 (35%), Gaps = 53/252 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           ++ ++ +LDG     + +   +F    +  ++A  +R Q   ++        +  +  +E
Sbjct: 1   MQATIYDLDGNAGDEVDLP-AVFETTVRPDLIATAVRAQQANRKQDYGSDEYAGLRTPAE 59

Query: 57  VAYTGSKM-YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHAL 114
              +G  M +V +  G+AR     V Q  GG  A  P         +  K R LA R A+
Sbjct: 60  SFGSGRGMAHVPREGGQAR----RVPQAVGGRPAHPPKAEKDRSLTINDKERKLATRSAI 115

Query: 115 SDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-- 158
           +    S  +              +V+D+      KT+ +V    +L +   +        
Sbjct: 116 AATADSELVAERGHEFDDDLELPLVVDDSFEDLQKTQAVVDTLESLGVHADIERADDTKI 175

Query: 159 ---------------------LDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL-V 193
                                       AARN+   ++   + +N  D+       +L +
Sbjct: 176 KAGKGSARGRKYRRPSSILFVTSEEPSKAARNLAGADVTTAREVNAEDLAPGTAPGRLTI 235

Query: 194 LSKSAIEALEDR 205
            ++SA+  + +R
Sbjct: 236 WTESALAEVSER 247


>gi|1487948|emb|CAA68182.1| ribosomal protein L4 [Canis sp.]
          Length = 420

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 79/258 (30%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 7   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 126 ALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 185

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A R  P I LL V  +N+  +     +
Sbjct: 186 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRKHPGITLLNVSKLNILKLAPGGHV 245

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 246 GRFCIWTESAFRKLDDLY 263


>gi|170280411|gb|ACB12079.1| ribosomal protein L4 [Heliothis virescens]
          Length = 426

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 78/255 (30%), Gaps = 57/255 (22%)

Query: 4   LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57
           +SV     E     S+    +F    +  ++  V    S   R   S SK       +E 
Sbjct: 10  VSVYTEKSEAVAGASLPLPFVFKAPIRPDLVNDVHVSMSKNARQPYSVSKEAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108
             TG    ++   +G G  R    +      GG+ F P          +  + R      
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAAVAA 129

Query: 109 -----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
                        R  + +K     ++V D  V +  KTK  V   R +   + ++    
Sbjct: 130 AVAASGVPALVQARGHIIEKVPELPLVVSDK-VQEINKTKQAVIFLRRIKAWSDVLKVYK 188

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D+    A RNIP + +L V  +N+  +     
Sbjct: 189 SQRLRAGKGKMRNRRRVQRKGPLIIYHKDQGLTRAFRNIPGVEMLNVDKLNLLKLAPGGH 248

Query: 192 L----VLSKSAIEAL 202
           L    + ++SA + L
Sbjct: 249 LGRFCIWTQSAFDRL 263


>gi|316973901|gb|EFV57444.1| 60S ribosomal protein L4-A [Trichinella spiralis]
          Length = 387

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 76/258 (29%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  G      I + + +F    +  +++ +        R        +  +  +E 
Sbjct: 6   VSVYDEKGNLTEETIKLPD-VFKAPLRPDLVSFIHAQMRLNARQPYAVSRKAGHQTSAES 64

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 65  WGTGRAVSRIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTSVWRRWHRRINVAQKRYAICS 124

Query: 113 ALSDKFCSNDIMVIDNLVSKEC--------------KTKYLVTRFR-------------- 144
           A++     + IM   + +S+                KTK  V   +              
Sbjct: 125 AIAATGIPSLIMARGHSISEIPEVPLVVCDKLEGYKKTKDAVAFLKAVKAWSDIEKVYNS 184

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                +     +   + A RNIP I+ L V  +N+  +     L
Sbjct: 185 RRHRAGKGKMRNRRWKQKKGPLIIYNHNNGIKQAFRNIPGISFLQVDNLNLLKLAPGGHL 244

Query: 193 ----VLSKSAIEALEDRF 206
               + +  A + L   +
Sbjct: 245 GRFCIWTAGAFKKLNALY 262


>gi|320581244|gb|EFW95465.1| 60S ribosomal protein YmL6, mitochondrial precursor [Pichia angusta
           DL-1]
          Length = 262

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 20/208 (9%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           V         ++ +L   +  +   KR+G S   GRS+  ++  K+  QKG+GRAR    
Sbjct: 50  VHNAFLNAPIRRDVLWLAVVMELDNKRVGASNPPGRSDHKFSRHKLLPQKGSGRARVGDA 109

Query: 79  SVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV------- 130
           +      G  A     P      LP+KV  +A R ALS  + +  + V+           
Sbjct: 110 NSPIRFRGAYALARTAPNDFSTDLPQKVYDMAYRIALSSAYKAGKLFVVGEHEAAGSELL 169

Query: 131 ----------SKECKTKYLVTRFRALDLSNALIIDGCQLDR-NFQLAA-RNIPNINLLPV 178
                         +              N L I G      N   A  +    + +L  
Sbjct: 170 PGDSFNLELTHSHPRALDTFVAKHGFSKLNVLFIPGEYDPEANLAKAVSKYSDKVRILRK 229

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           + + V D+L+  +LV+SK A+     ++
Sbjct: 230 EDVEVRDLLKADRLVVSKDALVYFAAKY 257


>gi|84994848|ref|XP_952146.1| 60S ribosomal subunit protein L4/L1 [Theileria annulata strain
           Ankara]
 gi|65302307|emb|CAI74414.1| 60S ribosomal subunit protein L4/L1, putative [Theileria annulata]
          Length = 426

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 83/247 (33%), Gaps = 48/247 (19%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV ++  E +   ++   +F+   +  ++  V    S  KR   + S+       +   
Sbjct: 7   VSVFSVSTEKRMGSTIMPRVFSTPLRSDLVHYVHTNMSKNKRQAYAISRMSGYQTSARSW 66

Query: 59  YTGSKMYVQK---GTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG  +       G G  R    + + F   G  F P          +  K + LAL  +
Sbjct: 67  GTGRALSRTPRVKGGGTHRSGQAAYANFCRAGGMFAPTRTWRHWHRKINLKEKRLALAVS 126

Query: 114 ----------LSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRAL------------- 146
                     +S       +    +V+D+ +    KT+  V    ++             
Sbjct: 127 VAATASVPLVMSRGHRVESVPELPLVLDDTMETLTKTRDAVELLNSMGLADELKRVSVTK 186

Query: 147 -------DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLS 195
                        ++         + A RNIP ++++ V+ +N+  +         ++ S
Sbjct: 187 RTKRKGKKRPVGPLVVMRSTAVEGKRAFRNIPGVDVMSVEHMNLLKLAPAGTLGRLVIFS 246

Query: 196 KSAIEAL 202
           KSA E L
Sbjct: 247 KSAFELL 253


>gi|312385773|gb|EFR30192.1| hypothetical protein AND_00368 [Anopheles darlingi]
          Length = 429

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 83/259 (32%), Gaps = 57/259 (22%)

Query: 4   LSVRNLDGEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +SV     E      IS+   +F    +  +++ V +     KR        +  +  +E
Sbjct: 10  ISVYTEKNEAAKDKGISLP-VLFKAPIRPDVVSEVSQLMRRNKRQPYAVSEAAGHQTSAE 68

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++   +G G  R    +      GG+ F P          +   ++  AL 
Sbjct: 69  SWGTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKTWRRWHRKINVNLKRYALV 128

Query: 112 HAL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL          S     + I    +V+ + + K  KTK  V   R   +   +     
Sbjct: 129 SALAATGVPALVQSRGHVIDGISELPLVVSDDIQKFQKTKQAVKFLRRSKVWADVQKVYN 188

Query: 158 Q--------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D   + A RNIP ++ + V  +N+  +     
Sbjct: 189 SQRLRAGRGKMRNRRRIQRRGPLVIYAKDEGLRKAFRNIPGVDTMNVFKLNLLKLAPGGH 248

Query: 192 L----VLSKSAIEALEDRF 206
           +    V ++SA   L++ +
Sbjct: 249 VGRLCVWTESAFAKLDEIY 267


>gi|322372167|ref|ZP_08046708.1| 50S ribosomal protein L4P [Haladaptatus paucihalophilus DX253]
 gi|320548176|gb|EFW89849.1| 50S ribosomal protein L4P [Haladaptatus paucihalophilus DX253]
          Length = 248

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 95/255 (37%), Gaps = 58/255 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++ +VR+L+GED   + + + +F    +  ++ R +      ++        +  +  +E
Sbjct: 1   MQATVRDLNGEDADTVDLPD-VFDTTVRTDLIKRAVLAAQANRKQDYGTDPHAGMRTSAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
              +G  M     T      +  V    GG  A  P        ++ KK R LA+R A++
Sbjct: 60  SPGSGRGMAHIPRTNG---RAARVPSAVGGRPAHPPKAEKDRSLSINKKERKLAVRSAIA 116

Query: 116 DKFCSN---------------DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD 160
               +                 ++V D+      KT+ +V+   A+ +     I+  + +
Sbjct: 117 ATADAELVAERGHDFDEETELPLVVSDDFE-DLVKTQEVVSFLEAVGIDAD--IERAEEN 173

Query: 161 RNFQ--------------------------LAARNIPNINLLPVQGINVYDIL---RCSK 191
           +  +                           AARN+   ++   + +N  D+    +  +
Sbjct: 174 KKVRAGRGKTRGRKYKTPKSILFVTSEEPSRAARNLAGADVATAREVNAEDLAPGTQAGR 233

Query: 192 L-VLSKSAIEALEDR 205
           L V ++SA+E + DR
Sbjct: 234 LTVWTESALEEVADR 248


>gi|254577101|ref|XP_002494537.1| ZYRO0A03828p [Zygosaccharomyces rouxii]
 gi|238937426|emb|CAR25604.1| ZYRO0A03828p [Zygosaccharomyces rouxii]
          Length = 362

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 76/259 (29%), Gaps = 54/259 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            ++SV++L+G+          +FA   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVSVQSLEGKATSSAVPLPAVFAAPIRADIVHSVFTSVNKNKRQAYSVSPQAGMQHSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G       +      GG+ F P          + +  +  A  
Sbjct: 64  SWGTGRAVARIPRVAGGGTHAAGQGAFGNMCRGGRMFAPTKTWRRWNVKVNQNEKRYATA 123

Query: 112 HAL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
            A+          +       I    +V+ N +    +TK  V+  +             
Sbjct: 124 SAIAASGVASLVLARGHRVEKIPEIPLVVSNDLESITRTKEAVSALKSLGAGADLVKVVR 183

Query: 145 -------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188
                                 +     D     A RN+P +    V  +N+  +     
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAQDNGLVKAFRNVPGVETCDVTALNLLQLAPGAH 243

Query: 189 -CSKLVLSKSAIEALEDRF 206
               ++ ++ A   L+  +
Sbjct: 244 LGRFVIWTEGAFSKLDKVW 262


>gi|303244464|ref|ZP_07330799.1| 50S ribosomal protein L4P [Methanothermococcus okinawensis IH1]
 gi|302485162|gb|EFL48091.1| 50S ribosomal protein L4P [Methanothermococcus okinawensis IH1]
          Length = 256

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 91/257 (35%), Gaps = 55/257 (21%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRS 55
           ++++ V N+DG +KG   +   +F  + +  ++ R        +         +  +  +
Sbjct: 4   IMKVKVYNMDGSEKGETELP-AVFETEYRPDLIRRAFLSSLTARLQPKGVDFMAGKRTSA 62

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL 114
           +    G      K TG+ +     V Q  GG +   P    I    + +K R  AL  A+
Sbjct: 63  KSIGKGHGRARVKRTGQGQ--GAFVPQAVGGRRCHPPKVEKILYERINRKERLKALMSAI 120

Query: 115 SDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRA--------------- 145
           +    S  +              +++DN      KTK ++  F+                
Sbjct: 121 AASANSEIVKSRGHVIDEVPSIPLIVDNEFENLKKTKEVLETFKNLGLDKDVERAKEGIK 180

Query: 146 ------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCS 190
                            ++++    L      A++N+P ++++    + V  I       
Sbjct: 181 IRAGIGKLRGRKYRKPKSVLVVVSSLCDAV-KASKNLPGVDVITADDLGVMHIAPGADAG 239

Query: 191 KL-VLSKSAIEALEDRF 206
           +L + ++ A+E L +RF
Sbjct: 240 RLTLWTEKAVEKLNERF 256


>gi|92090659|sp|Q28346|RL4_CANFA RecName: Full=60S ribosomal protein L4; AltName: Full=60S ribosomal
           protein L1
 gi|187609301|pdb|2ZKR|CC Chain c, Structure Of A Mammalian Ribosomal 60s Subunit Within An
           80s Complex Obtained By Docking Homology Models Of The
           Rna And Proteins Into An 8.7 A Cryo-Em Map
          Length = 421

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 79/258 (30%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A R  P I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRKHPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA   L+D +
Sbjct: 247 GRFCIWTESAFRKLDDLY 264


>gi|65082|emb|CAA28843.1| unnamed protein product [Xenopus laevis]
          Length = 396

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R   + SK       +E  
Sbjct: 12  ISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 72  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     +     A RNIP I LL V  +N+  +     + 
Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+D +
Sbjct: 252 RFCIWTESAFRKLDDLY 268


>gi|284162459|ref|YP_003401082.1| ribosomal protein L4/L1e [Archaeoglobus profundus DSM 5631]
 gi|284012456|gb|ADB58409.1| ribosomal protein L4/L1e [Archaeoglobus profundus DSM 5631]
          Length = 252

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 78/249 (31%), Gaps = 56/249 (22%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAY 59
            V NL GE    I +   +F  + +  I+ R +      +R        +      E   
Sbjct: 4   KVLNLKGEIVEEIELP-KVFETEFRPDIIKRAVLAIQSHRRQPYGTNPLAGVDYAWENWG 62

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118
            G               +  V Q  GG +A  P         + KK +  AL  A++   
Sbjct: 63  PGYGYARVPRWKIGSR-AVVVPQAVGGRRAHPPKVQKKWAEKINKKEKRKALMSAIAATA 121

Query: 119 CSN--------------DIMVIDNLVSKECKTKYLVTRFR-------------------- 144
                             I+V D    K  KTK +   F+                    
Sbjct: 122 NPELVKARNHVFEGELPKIVVDDIESIK--KTKEVAEIFKAIGVYADVERAKETKRVRAG 179

Query: 145 ------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL-----V 193
                    +    ++     D     AA+N+P ++ + V+ +NV ++L    +     V
Sbjct: 180 KGKMRGRRYVMKRSVLLVVGKDDGVIKAAKNLPGVDAVLVKDLNV-ELLAPGCVAGRLTV 238

Query: 194 LSKSAIEAL 202
            +KSAIE L
Sbjct: 239 WTKSAIEYL 247


>gi|62897675|dbj|BAD96777.1| ribosomal protein L4 variant [Homo sapiens]
          Length = 427

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 80/258 (31%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHANLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 113 ALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           AL+       +M              V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMPKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEALEDRF 206
               +  +SA   L++ +
Sbjct: 247 GRFCIWIESAFRKLDELY 264


>gi|242018771|ref|XP_002429847.1| 60S ribosomal protein L4, putative [Pediculus humanus corporis]
 gi|212514865|gb|EEB17109.1| 60S ribosomal protein L4, putative [Pediculus humanus corporis]
          Length = 671

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 82/260 (31%), Gaps = 60/260 (23%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V N   E  G   V   +F    +  ++  V    +  KR        +  +  +E  
Sbjct: 10  VTVYNDKNESTGTTIVLPSVFKAPIRPDVVNFVHDQMAKNKRQPYCVSEKAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+   P          +    R  A+   
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMASPTKPWRRWHRKINLNQRRYAMVSA 129

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S     N+I    +VI + + +  KTK  V   R +     +       
Sbjct: 130 LAASGVPALVMSKGHMINEIPELPLVISDKIQEYTKTKQAVVFLRRIKAWKDIEKVYKSR 189

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILR----- 188
                                     ++  + A RNIP ++L+ V  +   D+L+     
Sbjct: 190 RFRAGKGKMRNRRRIQRRGPLIVYSKNQGIRRAFRNIPGVDLINVSKL---DLLKVAPGG 246

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ ++SA + L   +
Sbjct: 247 HVGRFVIWTESAFKTLNALY 266


>gi|291397386|ref|XP_002715120.1| PREDICTED: ribosomal protein L4-like, partial [Oryctolagus
           cuniculus]
          Length = 290

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 77/254 (30%), Gaps = 56/254 (22%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           LSV +  GE  G  +++   +F    Q  I+  V        R        +  +  +E 
Sbjct: 8   LSVYSEKGESSGKNVTLP-AMFKAPIQPDIVNFVHTNVRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG     +   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVAGIPRVRGGGTHRSGQGAFRNMCRGGRMFAPTKTWCHWHRRVNTTQKWYAICS 126

Query: 113 ALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           AL+       +M              V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAALALPALVMSKGHGIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I LL V  +N+  +     +
Sbjct: 187 QRMRAGKGKMRNRRRTQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKLAPGGHV 246

Query: 193 ----VLSKSAIEAL 202
               + ++SA   L
Sbjct: 247 GRFCIWTESAFRKL 260


>gi|261327248|emb|CBH10224.1| 60S ribosomal protein L4 [Trypanosoma brucei gambiense DAL972]
          Length = 328

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 81/257 (31%), Gaps = 55/257 (21%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV +  + +  G  S+   +F    +  ++  V    +   R   +       K  +E 
Sbjct: 7   VSVYSASEDKVVGTCSLP-AVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ V    KTK  +T  + +   + +      
Sbjct: 126 ALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNI  ++L  V  +N+  +     + 
Sbjct: 186 RQIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGHVG 245

Query: 193 ---VLSKSAIEALEDRF 206
              + +KSA E L+  F
Sbjct: 246 RFIIWTKSAFEKLDKIF 262


>gi|148233066|ref|NP_001080545.1| 60S ribosomal protein L4-A [Xenopus laevis]
 gi|292495031|sp|P08429|RL4A_XENLA RecName: Full=60S ribosomal protein L4-A; AltName: Full=L1A
 gi|27882641|gb|AAH43895.1| Rpl-4 protein [Xenopus laevis]
 gi|77748123|gb|AAI06316.1| Rpl-4 protein [Xenopus laevis]
 gi|224828|prf||1202260A ribosomal protein L1a
          Length = 396

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R   + SK       +E  
Sbjct: 12  ISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 72  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     +     A RNIP I LL V  +N+  +     + 
Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+D +
Sbjct: 252 RFCIWTESAFRKLDDLY 268


>gi|257053360|ref|YP_003131193.1| 50S ribosomal protein L4P [Halorhabdus utahensis DSM 12940]
 gi|256692123|gb|ACV12460.1| ribosomal protein L4/L1e [Halorhabdus utahensis DSM 12940]
          Length = 247

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 84/253 (33%), Gaps = 55/253 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           ++ ++ +LDG+    I + + +F    +  ++   +      ++        +  +  +E
Sbjct: 1   MQATLHDLDGDAADEIELPD-VFETPYRPDLIKNAVLAAQANRKQDHGADEYAGMRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPI-IGVHALPKKVRSLALRHALS 115
              +G     Q    +    S+ V Q  GG +A  P        AL  K R LA R A++
Sbjct: 60  SQGSGRG---QAHVPQQDGRSRRVPQTVGGRRAHPPKAEADPAPALNDKERKLATRSAIA 116

Query: 116 DKFCSN---------------DIMVIDNLVSKECKTKYLVTRF----------------- 143
               +                 ++V D+      KT+ +V                    
Sbjct: 117 ATADAELVDARGHAFDDETDLPLVVSDDFE-DLVKTQAVVDVLEALGVDADIERADDRTV 175

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
                  R         +     +     AARN+   ++   + +N  D+       +L 
Sbjct: 176 RAGQGTTRGRKYRTPKSVLFVTSEEP-SKAARNLAGADVTTAREVNAEDLAPGTDAGRLT 234

Query: 193 VLSKSAIEALEDR 205
           + ++SAI  + DR
Sbjct: 235 LWTESAIAEVADR 247


>gi|296413694|ref|XP_002836544.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295630371|emb|CAZ80735.1| unnamed protein product [Tuber melanosporum]
          Length = 413

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 77/265 (29%), Gaps = 61/265 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +++   DG   G  +    +F    +  I+ +V    +  KR        +  +  +E
Sbjct: 43  PTVTIHGADGTPCGNTATLPSVFKAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGHQTSAE 102

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRS---- 107
              TG    ++    G G  R    +       G+ F P          +    +     
Sbjct: 103 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHVKINLGQKRFATA 162

Query: 108 ------------LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSN----- 150
                        A  H +S       +++ D+  +   KT+  V   +++         
Sbjct: 163 SALAASAAAPLVQARGHRIST-VPELPLVIADSAFADMSKTRAAVELLKSVGAYQDVTKA 221

Query: 151 -------------------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                     +I    +  ++   + RNIP +    V  +N+  
Sbjct: 222 SKSRKIRAGKGKLRGRRHRQRRGPLVIINPTDENAQSVVKSFRNIPGVETASVTSLNLLQ 281

Query: 186 ILRCSK----LVLSKSAIEALEDRF 206
           +         +V ++SA  AL   +
Sbjct: 282 LAPGGHLGRFVVWTESAFNALNTVY 306


>gi|312220746|emb|CBY00687.1| similar to 60S ribosomal protein L4 [Leptosphaeria maculans]
          Length = 371

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 74/261 (28%), Gaps = 60/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +++ +  GE     +   ++F    +  I+  V    +  +R        +  +  +E
Sbjct: 4   PTVTIISAKGEASSDTATVPNVFKAPIRPDIVHAVHTGMNKNRRQPYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A  
Sbjct: 64  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINQNQKRFATA 123

Query: 112 HALSDKFCSNDIMVIDNLVSKEC-----------------KTKYLVTRFR---------- 144
            A++       ++   + +S                    KT   V   +          
Sbjct: 124 SAIAASGSPALLLARGHHISTVPEVPLVVSSTAFADGAIKKTSAAVALLKAVGAGGDVEK 183

Query: 145 -------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                     +I +  +  ++  LA RNIP +    V  +N+  
Sbjct: 184 AKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKDLVLAFRNIPGVETSSVYSLNLLQ 243

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     L    V + SA  AL
Sbjct: 244 LAPGGHLGRFIVWTSSAFSAL 264


>gi|50285453|ref|XP_445155.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524458|emb|CAG58055.1| unnamed protein product [Candida glabrata]
          Length = 362

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 78/260 (30%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V++L GE          +FA   +  ++  V    +  KR        +  +  +E
Sbjct: 4   PQVTVQSLTGEATSSSVPLPAVFAAPIRPDLVHSVFVSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          + +  +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 124 SAIAASAVASLVLARGHRVEKIPEIPLVVSKDLESIKKTKEAVAALKAVGAGADLLKVIK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +  +PV  +N+  +    
Sbjct: 184 SKKMRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETVPVTALNLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 243 HLGRFVIWTEAAFAKLDQVW 262


>gi|284009776|ref|NP_001165003.1| 60S ribosomal protein L4 [Xenopus (Silurana) tropicalis]
 gi|89266823|emb|CAJ83407.1| ribosomal protein L4 [Xenopus (Silurana) tropicalis]
 gi|189442539|gb|AAI67741.1| Unknown (protein for MGC:186651) [Xenopus (Silurana) tropicalis]
 gi|197246565|gb|AAI68597.1| Unknown (protein for MGC:185639) [Xenopus (Silurana) tropicalis]
          Length = 396

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 12  ISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 71

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 72  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALI------ 153
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 132 LAASALPALVMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191

Query: 154 --------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     +     A RNIP I LL V  +N+  +     + 
Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVVYNENNGIVKAFRNIPGITLLNVSKLNLLRLAPGGHVG 251

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+D +
Sbjct: 252 RFCIWTESAFRKLDDLY 268


>gi|170035401|ref|XP_001845558.1| 60S ribosomal protein L4 [Culex quinquefasciatus]
 gi|167877374|gb|EDS40757.1| 60S ribosomal protein L4 [Culex quinquefasciatus]
          Length = 436

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 82/258 (31%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +S+     E     +++   +F    +  +++ V +     +R        +  +  +E 
Sbjct: 10  VSIYTEKNEAVKDKNIALPYVFKAPIRPDVVSEVSQLMRRNRRQPYAVSEAAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +   ++  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNLKRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           A+          S     + +    +V+ + V K  KTK  V   R   +   +      
Sbjct: 130 AIAASGVPALVQSRGHVIDGLSELPLVVSDDVQKFQKTKQAVAFLRRSKVWADVQKVYKS 189

Query: 159 --------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D   + A RNIP ++ + V  +N+  +     +
Sbjct: 190 QRLRAGRGKMRNRRRVQRRGPLVIYAKDEGLRKAFRNIPGVDTMKVTRLNLLKLAPGGHV 249

Query: 193 ----VLSKSAIEALEDRF 206
               V ++SA   L + +
Sbjct: 250 GRLCVWTESAFAQLNEIY 267


>gi|195395011|ref|XP_002056130.1| GJ10395 [Drosophila virilis]
 gi|194142839|gb|EDW59242.1| GJ10395 [Drosophila virilis]
          Length = 401

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 10  VSVYTEKNEAVKEKNICLPAVFKAPIRPDVVNEVHQLMRRNNRQPYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           A+          S     + +    +V+ + V K  KTK  V   R L +   +      
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKLQKTKQAVVFLRRLKVWADIQKVYKS 189

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYHKDEGLRKAFRNIPGIETISVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFSRLNDLF 267


>gi|313622213|gb|EFR92739.1| 50S ribosomal protein L4 [Listeria innocua FSL J1-023]
          Length = 91

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 47/90 (52%)

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
           K     ++V++ L     KTK      + + +    +I       N +L+ARN+  I ++
Sbjct: 1   KVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVI 60

Query: 177 PVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           P + I+V ++ +  KL+++K+A+E +E+  
Sbjct: 61  PAESISVLEVAKHDKLIITKAAVEKVEEVL 90


>gi|229077412|ref|ZP_04210064.1| hypothetical protein bcere0023_1260 [Bacillus cereus Rock4-2]
 gi|228705888|gb|EEL58222.1| hypothetical protein bcere0023_1260 [Bacillus cereus Rock4-2]
          Length = 78

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 43/76 (56%)

Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
               KTK ++   + L +    +I     + + +L+ARNIP + ++   G+NV D+L   
Sbjct: 2   LNAPKTKDMLAVLKGLTVEKKALIVTADANESVELSARNIPGVTVITADGVNVLDVLHHD 61

Query: 191 KLVLSKSAIEALEDRF 206
           KL+++K+A+E +E+  
Sbjct: 62  KLIMTKAAVEKVEEVL 77


>gi|313756|emb|CAA29796.1| L1a protein [Xenopus laevis]
          Length = 396

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R   + SK       +E  
Sbjct: 12  ISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESW 71

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 72  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSA 131

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 132 LAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQ 191

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     +     A RNIP I LL V  +N+  +     + 
Sbjct: 192 RMRAGKGKMRNRRRIQRRGPCVIYNENNGLVKAFRNIPGITLLNVSKLNLLRLALGGHVG 251

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L+D +
Sbjct: 252 RFCIWTESAFRKLDDLY 268


>gi|156085304|ref|XP_001610129.1| ribosomal protein RPL4A [Babesia bovis]
 gi|154797381|gb|EDO06561.1| ribosomal protein RPL4A [Babesia bovis]
          Length = 360

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 82/251 (32%), Gaps = 51/251 (20%)

Query: 2   IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55
            E+SV N  DGE  G  ++   +F+   +  ++  V    S  +R   + SK       +
Sbjct: 5   PEVSVHNATDGERVG-ATLMPKVFSAPLRLDLVRIVHTNMSKNRRQAYAVSKMSGYQTSA 63

Query: 56  EVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
               TG  M      KG G  R    + + F   G  + P          +  K +  AL
Sbjct: 64  RSWGTGRAMARVPRVKGGGTHRAGQAAYANFCRAGGMYAPTRVWRRWHRKVNLKEKRQAL 123

Query: 111 R----------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------ 144
                        +S       +    MV+D+ + +  KTK  V                
Sbjct: 124 ASALAATAVVPVVMSRGHRIEALREVPMVVDDAIEQINKTKDAVKLLETIGLGAELKRID 183

Query: 145 ---------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192
                            +I         + A RNIP + +  V+ +N+  +     L   
Sbjct: 184 KVTGRARDGRKKRPVGPLIILRATAVEGKRAFRNIPGVEVACVERLNLLKLAPAGALGRL 243

Query: 193 -VLSKSAIEAL 202
            V SKSA EAL
Sbjct: 244 CVWSKSAFEAL 254


>gi|76642853|ref|XP_871569.1| PREDICTED: 60S ribosomal protein L4-like isoform 2 [Bos taurus]
 gi|297486440|ref|XP_002695663.1| PREDICTED: 60S ribosomal protein L4-like [Bos taurus]
 gi|296476944|gb|DAA19059.1| 60S ribosomal protein L4-like [Bos taurus]
          Length = 422

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 77/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSKKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G         +      GG+ F P        H +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGRTHHSGQGAFGNMCRGGRMFAPTKTWQRWHHRVNTTQKRYAICSE 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      ++    +V+++ V    K+K  V   + L   N +       
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKSKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A R+IP I LL V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNRHRIQRRGPCIIYNEDNGIIKAFRSIPGITLLNVSKLNILKLAPGGYVG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L++ +
Sbjct: 248 RFCIWTESAFRKLDELY 264


>gi|125773997|ref|XP_001358257.1| GA18932 [Drosophila pseudoobscura pseudoobscura]
 gi|54637993|gb|EAL27395.1| GA18932 [Drosophila pseudoobscura pseudoobscura]
          Length = 401

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R        +  +  +E 
Sbjct: 10  VSVYTEKNEAAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQPYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS--------- 149
           A+          S     + +    +V+ + V K  KTK  V   R L +          
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKLQKTKQAVIFLRRLKIWADIQKVYKS 189

Query: 150 -----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                +     D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRVARRGPLVVYHKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFSRLNDLF 267


>gi|225713364|gb|ACO12528.1| 60S ribosomal protein L4 [Lepeophtheirus salmonis]
          Length = 386

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 77/253 (30%), Gaps = 54/253 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++VR+  G   G       +F    +  +++ +    +  +R        +  +  +E  
Sbjct: 10  VTVRSEKGLPAGSTVTLPAVFKAPIRPDVVSFIHHEVAKNRRQPYAVNQDAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG  F P          +    +  A+  A
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPTKTFRRWHRKVNVAQKRYAMCSA 129

Query: 114 LS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF---------------- 143
           ++            + I       +V+ + V    KTK  +                   
Sbjct: 130 IASSGVPALVMAKGHQIQDVHEVPLVVQDKVESYTKTKDAMILLHRLKAWKDIDQVYKSK 189

Query: 144 ----------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                         +     +     D   + A RNIP  + + V+ +N+  +     + 
Sbjct: 190 RMRPGKGKMRNRRRIQKLGPLIVYNKDEGVRRAFRNIPGCDTIQVENLNLLKLAPGGHVG 249

Query: 193 ---VLSKSAIEAL 202
              + ++SA + L
Sbjct: 250 RFCIWTESAFKKL 262


>gi|44968095|gb|AAS49583.1| ribosomal protein L4 [Gallus gallus]
          Length = 280

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 55/246 (22%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYV 66
             +++   +F    +  ++  V        R        +  +  +E   TG    ++  
Sbjct: 2   KNVTLP-AVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPR 60

Query: 67  QKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR----------HAL 114
            +G G  R    +      GG+ F P          +    +  A+             +
Sbjct: 61  VRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNVTQKRYAICSALAASALPALVM 120

Query: 115 SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC------------- 157
           S      +I    +V+++ V    KTK  V   + L   N +                  
Sbjct: 121 SKGHRIEEIPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 180

Query: 158 -------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIE 200
                          D     A RNIP I LL V  +N+  +     +    + ++SA  
Sbjct: 181 RRRIQRRGPCIIYNEDNGIIRAFRNIPGITLLDVNKLNLLRLAPGGHVGRFCIWTESAFR 240

Query: 201 ALEDRF 206
            L+D +
Sbjct: 241 KLDDLY 246


>gi|242032693|ref|XP_002463741.1| hypothetical protein SORBIDRAFT_01g005210 [Sorghum bicolor]
 gi|241917595|gb|EER90739.1| hypothetical protein SORBIDRAFT_01g005210 [Sorghum bicolor]
          Length = 404

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 76/245 (31%), Gaps = 56/245 (22%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQK 68
           I +++ +     +  I+  V +  S   R        +  +  +E   TG    ++    
Sbjct: 25  IPLAD-VLRAPLRPDIVRFVHKLLSCNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVP 83

Query: 69  GTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALS-------DKFC 119
           G G  R    +      GG+ F P          +   +R +A+  ALS           
Sbjct: 84  GGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNIHLRRVAIASALSATTVPSLVLAR 143

Query: 120 SNDI-------MVIDNLVSKECKTKYLVTRFRA--------------------------- 145
            + +       +V+ +      KT   +   +                            
Sbjct: 144 GHRVESVPELPLVVSDSAESIEKTTQAIKILKQLGAYADAEKAKDSVGIRPGKGKMRNRR 203

Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEA 201
                  ++           A RN+P +++  V+ +N+ D+         ++ ++SA + 
Sbjct: 204 YINRKGPLVVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKK 263

Query: 202 LEDRF 206
           L++ +
Sbjct: 264 LDEVY 268


>gi|189188410|ref|XP_001930544.1| 60S ribosomal protein L4-A [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972150|gb|EDU39649.1| 60S ribosomal protein L4-A [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 371

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V +  GE         ++F    +  I+  V    +  +R        +  +  +E
Sbjct: 4   PTVTVVSAKGEATTDTVPVPNVFKAPIRPDIVHAVHTGMNKNRRQPYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATA 123

Query: 112 HALSDKFCSNDIMVIDNLVSKEC-----------------KTKYLVTRFR---------- 144
            AL+       ++   + +S                    KT   V   +          
Sbjct: 124 SALAASGSPALLLARGHAISTVPEVPLVISSTAFADAAIKKTSAAVALLKAVGAGADVEK 183

Query: 145 -------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                     +I +  +  +   LA RNIP +    V  +N+  
Sbjct: 184 ARNTRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVLAFRNIPGVETSSVYSLNLLQ 243

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + SA  AL+  +
Sbjct: 244 LAPGGHLGRFIVWTSSAFTALDKVY 268


>gi|330925322|ref|XP_003301002.1| hypothetical protein PTT_12401 [Pyrenophora teres f. teres 0-1]
 gi|311324565|gb|EFQ90874.1| hypothetical protein PTT_12401 [Pyrenophora teres f. teres 0-1]
          Length = 371

 Score = 85.1 bits (209), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V +  GE         ++F    +  I+  V    +  +R        +  +  +E
Sbjct: 4   PTVTVVSAKGEATTDTVPVPNVFKAPIRPDIVHAVHTGMNKNRRQPYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFATA 123

Query: 112 HALSDKFCSNDIMVIDNLVSKEC-----------------KTKYLVTRFR---------- 144
            AL+       ++   + +S                    KT   V   +          
Sbjct: 124 SALAASGSPALLLARGHAISTVPEVPLVISSTAFADAAIKKTSAAVALLKAVGAGADVEK 183

Query: 145 -------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                     +I +  +  +   LA RNIP +    V  +N+  
Sbjct: 184 ARNTRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVLAFRNIPGVETSSVYSLNLLQ 243

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + SA  AL+  +
Sbjct: 244 LAPGGHLGRFIVWTSSAFTALDKVY 268


>gi|242211343|ref|XP_002471510.1| 60S ribosomal protein L4/L1/L2 [Postia placenta Mad-698-R]
 gi|220729369|gb|EED83244.1| 60S ribosomal protein L4/L1/L2 [Postia placenta Mad-698-R]
          Length = 372

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 86/259 (33%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++VR+  GE    + +   +     +  ++ +V +  +  KR        +  +  +E
Sbjct: 5   PTVNVRSTSGEASSSLPLP-AVLTAPIRLDVVQQVHKSIAKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          + +  R  A+ 
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQGQRRFAVV 123

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL+            + I       +VI + V    KTK  V   ++L     ++    
Sbjct: 124 SALAASALPSLVLARGHRIEEIEEVPLVISSEVESFAKTKQAVALLKSLKAYTDVVKVSN 183

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D+    A RN+P + L+ V+ +N+  +     
Sbjct: 184 SRKLRAGKGKLRNRRHRQRRGPLVVYNEDKGIVKAFRNLPGVELVNVRRLNLLQLAPGGH 243

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ ++SA   L++ F
Sbjct: 244 LGRFVIWTESAFGLLDEVF 262


>gi|168002016|ref|XP_001753710.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695117|gb|EDQ81462.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V+++DG +KG  +    +F    +  ++  V    +  KR        +  +  +E  
Sbjct: 11  VTVQSVDGSEKGAQATLPAVFLAPIRPDVVGAVHSALAKNKRQPYAVSVKAGHQTSAESW 70

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 71  GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRKINLNQKRYAIASA 130

Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR--------------- 144
           L+            + I       +V+ +      KT   V   +               
Sbjct: 131 LAASAIPSLVLARGHKIEQVPEVPLVLADGAEGIEKTSAAVKLLKSVGAYADVEKVKASH 190

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                               ++           A RNIP + ++ V  +N+  +     L
Sbjct: 191 SIRAGKGKMRNRRYVSRRGPLVVYGTEGAKLVKAFRNIPGVEVVSVNHLNLLQLAPGGHL 250

Query: 193 ----VLSKSAIEALEDRF 206
               V +KSA E L+  +
Sbjct: 251 GRFIVWTKSAFEKLDVVY 268


>gi|168014976|ref|XP_001760027.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688777|gb|EDQ75152.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V+++DG +KG  +    +F    +  ++A V    +  KR        +  +  +E  
Sbjct: 11  VTVQSIDGGEKGAQASLPAVFLAPIRPDVVATVHTALAKNKRQPYAVSVKAGHQTSAESW 70

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 71  GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKVNLNQKRYAIASA 130

Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS---------- 149
           L+            + I       +V+ +      KT   V   + +             
Sbjct: 131 LAASAVPSLVLARGHKIEQVPEVPLVLADGAEHIEKTSAAVKLLKLMGAYADVEKVKASH 190

Query: 150 -----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                               ++           A RNIP + ++ V  +N+  +     L
Sbjct: 191 SIRAGKGKMRNRRYVSRRGPLVVYGTEGAKLVKAFRNIPGVEIVSVDRLNLLQLAPGGHL 250

Query: 193 ----VLSKSAIEALEDRF 206
               + +KSA E L+  F
Sbjct: 251 GRFIIWTKSAFEKLDSVF 268


>gi|194746355|ref|XP_001955646.1| GF18868 [Drosophila ananassae]
 gi|190628683|gb|EDV44207.1| GF18868 [Drosophila ananassae]
          Length = 401

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV     E     S+    +F    +  ++  V +      R        +  +  +E 
Sbjct: 10  VSVYTEKNEAAKDKSICLPAVFKAPIRPDVVNDVHQLLRRNNRQPYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS--------- 149
           A+          S     + +    +V+ + V K  KTK  V   R L +          
Sbjct: 130 AIAASGVPALVQSKGHIIDGVSEFPLVVSDEVQKLQKTKQAVIFLRRLKIWADIQKVYKS 189

Query: 150 -----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                +     D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRVARRGPLVVYHKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFSRLNDLF 267


>gi|195037353|ref|XP_001990125.1| GH18408 [Drosophila grimshawi]
 gi|193894321|gb|EDV93187.1| GH18408 [Drosophila grimshawi]
          Length = 401

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 10  VSVYTEKNEALKEKNICLPAVFKAPIRPDVVNEVHQLMRRNNRQPYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS--------- 149
           A+          S     + I    +V+ + V K  KTK  V   R + +          
Sbjct: 130 AIAASGVPALVQSKGHVIDGISEFPLVVSDEVQKLQKTKQAVVFLRRMKVWADIQKVYKS 189

Query: 150 -----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                +     D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRIARKGPLVVYHKDEGLRQAFRNIPGIETICVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFSRLNDLF 267


>gi|226466798|emb|CAX69534.1| putative mitochondrial ribosomal protein L4 isoform a [Schistosoma
           japonicum]
          Length = 450

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 14  KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS-KMYVQKGTGR 72
            G++ +  DIFA+ P+  ++ + L WQ+  + I       R+E+ Y    K + QK TG+
Sbjct: 96  VGMVDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCITTRAELPYGTRKKPWPQKKTGK 155

Query: 73  ARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVS 131
           ARH ++    +  GG+  GP  P    + LP   R   L   L+ K   ND+ ++D+ + 
Sbjct: 156 ARHGNRRTHIWLTGGQCKGPRGPESFFYVLPYNERLAGLLSMLTIKHAQNDLHIVDDFML 215

Query: 132 KE 133
            E
Sbjct: 216 SE 217



 Score = 42.0 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 172 NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            + L+PV  +NV+ ++    LV+S  A+E LE + 
Sbjct: 355 GLTLMPVHSLNVWSMVHHDTLVISLKALEILETKL 389


>gi|18978196|ref|NP_579553.1| 50S ribosomal protein L4P [Pyrococcus furiosus DSM 3638]
 gi|46396648|sp|Q8TZZ9|RL4_PYRFU RecName: Full=50S ribosomal protein L4P
 gi|18894005|gb|AAL81948.1| LSU ribosomal protein L4P [Pyrococcus furiosus DSM 3638]
          Length = 255

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 90/256 (35%), Gaps = 53/256 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           +++ V +L+G+  G I +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFDLNGQPVGEIELP-KVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  M   +        +  V   RGG +   P     +   + KK + LAL  A++
Sbjct: 60  NIGKGHSMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIA 119

Query: 116 DKFCSN---------------DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL- 159
                +                ++V+D+L  K  KT+     F+ L + + ++    +  
Sbjct: 120 ATANYDLVRARGHIIDNVPQLPLIVVDDLQ-KVQKTRETREIFKKLGIWDDIVRAKEKSG 178

Query: 160 -------------------------DRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191
                                    +    L ARN P ++++ V  + V  +       +
Sbjct: 179 VRAGKGKMRGRRYKKAKGPLIVVGKNEGIVLGARNHPGVDVVVVDNLGVEHLAPGTHPGR 238

Query: 192 L-VLSKSAIEALEDRF 206
           L V + SAIE L + +
Sbjct: 239 LTVWTVSAIERLRELY 254


>gi|326427311|gb|EGD72881.1| Ras2 [Salpingoeca sp. ATCC 50818]
          Length = 372

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 71/259 (27%), Gaps = 56/259 (21%)

Query: 3   ELSVR-NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +++V     G   G +++   +F    +  ++  V    +   R        +  +  + 
Sbjct: 7   QVTVYGTSKGASVGQVALP-AVFTAPIRTDVVHFVHTNMAKNSRQPYAVSERAGHQHSAA 65

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G+G +R    +       G+ F P          + K  R  A  
Sbjct: 66  SWGTGRAVSRIPRVAGSGTSRSGQGAFGNMCRKGRMFAPTKIWRHWHRRINKNQRRFATA 125

Query: 112 HAL-------------SDKFCSNDIMVIDNLVSKECKTKYLV------------------ 140
            AL                     + ++ +   +  KT                      
Sbjct: 126 SALAASALPSLVEARGHSIAKLQQVPLVVSNEVESMKTTKAAVALLKTLGAYNDVDRCKN 185

Query: 141 ---------TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                 +   + +     A RN+P + L PV+ ++V  +     
Sbjct: 186 SRSLRSGKGKWRNRRHTMRRGPLVCYKKNNGIVRAFRNLPGVELCPVESLSVLKLAPGGH 245

Query: 192 L----VLSKSAIEALEDRF 206
           +    + ++ A   L   F
Sbjct: 246 VGRFIIWTEGAFNHLNKLF 264


>gi|318068006|ref|NP_001187034.1| ribosomal protein L4 [Ictalurus punctatus]
 gi|15293869|gb|AAK95127.1|AF401555_1 ribosomal protein L4 [Ictalurus punctatus]
          Length = 385

 Score = 84.4 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G   V   +F    +  ++  V       KR        +  +  +E  
Sbjct: 8   ISVYSDKGETSGKNVVLPAVFTAPIRPDVVNFVHTNMRKNKRHAYAVSEQAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINVTQKRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     ++      +I    +V+D+ V    KTK  V   + L   N +       
Sbjct: 128 LAGSALPALVMAKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP + +  V  +N+  +     + 
Sbjct: 188 RMRAGKGKMRNGRRIQRKGPCIIYNEDNGVTKAFRNIPGVTMQRVTKLNLLKLAPGGHIG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + +++A   L+D +
Sbjct: 248 RFCIWTEAAFRKLDDLY 264


>gi|221119707|ref|XP_002157151.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 375

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 79/256 (30%), Gaps = 61/256 (23%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEVA 58
           ++V +  GE    I +   +F    +  ++  V    S   R        + ++  +   
Sbjct: 8   VTVLSDQGEKLKQIPLP-AVFKAPIRPDVVNFVHSNMSKNSRQAFSVHKHAGAQTSATSW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          + +  R  A+  A
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRHVNQNQRRYAVCSA 126

Query: 114 LSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFR--------------- 144
           L+       +              +V  N +    KTK  V   +               
Sbjct: 127 LAATALPALVMARGHKIENLTEVPVVCSNNIENLTKTKAAVQFLKKINAYEDVQKCQDSK 186

Query: 145 -----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR----- 188
                               +   + D   + A RN+P ++L+ V  +N   +L+     
Sbjct: 187 KIRAGKGKMRNRRYTMRRGPLVVFKEDHGIKQAFRNLPGVDLIQVDRLN---LLKLCPGG 243

Query: 189 --CSKLVLSKSAIEAL 202
                ++ S+SA E L
Sbjct: 244 HLGRFVIWSESAFERL 259


>gi|289739703|gb|ADD18599.1| ribosomal protein L4 [Glossina morsitans morsitans]
          Length = 405

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV +   E     ++    +F    +  ++  + +     KR   +       +  +E 
Sbjct: 10  VSVYSEKNEQIKEKNICLPAVFKAPIRPDVVNDIHQLMRRNKRQPYAVSEQAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRKINVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           A+          S     + +    +V+ + V K  KTK  V   R + +   +      
Sbjct: 130 AIAASGVPALVQSKGHIIDGVSEFPLVVSDEVQKLQKTKQAVVFLRRMKIWADIQKVYKS 189

Query: 159 --------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLIIYFKDEGLRRAFRNIPGIETMCVDKMNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L + F
Sbjct: 250 GRFVIWTESAFARLNELF 267


>gi|195143979|ref|XP_002012974.1| GL23641 [Drosophila persimilis]
 gi|194101917|gb|EDW23960.1| GL23641 [Drosophila persimilis]
          Length = 401

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R        +  +  +E 
Sbjct: 10  VSVYTEKNEAAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQPYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           A+          S     + +    +V+ + V K  KTK  V   R L +   +      
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKLQKTKQAVIFLRRLKIWADIQKVYKS 189

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRVARRGPLVVYHKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFSRLNDLF 267


>gi|158291187|ref|XP_312665.4| AGAP002306-PA [Anopheles gambiae str. PEST]
 gi|157018256|gb|EAA07484.5| AGAP002306-PA [Anopheles gambiae str. PEST]
          Length = 435

 Score = 84.4 bits (207), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 83/259 (32%), Gaps = 57/259 (22%)

Query: 4   LSVRNLDGEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +SV +   E      +++   IF    +  ++  V +     +R        +  +  +E
Sbjct: 10  VSVYSDKNEAVKDKGVALP-AIFKAPIRPDVVNEVSQLMRRNRRQAYAVSEAAGHQTSAE 68

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++   +G G  R    +      GG+ F P          +   ++  AL 
Sbjct: 69  SWGTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKPWRRWHRKININLKRYALV 128

Query: 112 HAL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL          S     + I    +V+ + + K  KTK  VT  R   +   +     
Sbjct: 129 SALAASGVPALVQSRGHIIDGISELPLVVSDDIQKFQKTKQAVTFLRRSKVWADVQKVYK 188

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D   + A RNIP ++ + V  +N+  +     
Sbjct: 189 SQRLRAGRGKMRNRRRVQRRGPLIIYDRDEGLRRAFRNIPGVDTMRVSKMNLLKLAPGGH 248

Query: 192 L----VLSKSAIEALEDRF 206
           +    V ++SA   L+  +
Sbjct: 249 VGRLCVWTESAFAKLDGLY 267


>gi|315283849|ref|ZP_07871906.1| 50S ribosomal protein L4 [Listeria marthii FSL S4-120]
 gi|313606526|gb|EFR83353.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL F2-208]
 gi|313612508|gb|EFR86593.1| 50S ribosomal protein L4 [Listeria marthii FSL S4-120]
          Length = 90

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 46/89 (51%)

Query: 118 FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLP 177
                ++V++ L     KTK      + + +    +I       N +L+ARN+  I ++P
Sbjct: 1   VNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIP 60

Query: 178 VQGINVYDILRCSKLVLSKSAIEALEDRF 206
            + I+V ++ +  KL+++K+A+E +E+  
Sbjct: 61  AESISVLEVAKHDKLIITKAAVEKVEEVL 89


>gi|312137076|ref|YP_004004413.1| lsu ribosomal protein l4p [Methanothermus fervidus DSM 2088]
 gi|311224795|gb|ADP77651.1| LSU ribosomal protein L4P [Methanothermus fervidus DSM 2088]
          Length = 255

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 53/255 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++ +V +LDGE    + + E IF    +  ++ R +      +         +  +  + 
Sbjct: 1   MKANVYSLDGEVIEKVKLPE-IFEEHLRPDLIKRAVLSIQTARIQPWGPNKMAGKRTTAV 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  + +          +  V Q  GG KA  P P    H  + +K R LALR A++
Sbjct: 60  SRGAGYGIAMVPRIKTPPERAAFVPQAVGGRKAHPPKPEKIYHERINRKERRLALRSAIA 119

Query: 116 DKFCSN---------------DIMVIDNLV--SKECKTKYLVTRFRALDLSNALI----- 153
                                 ++V D L    K  +T+ +  +   +D           
Sbjct: 120 ATANKELVKQRGHRIDNVPEIPLIVEDKLSTLKKTRETREVFKKLGVMDDIIRAKKGRKI 179

Query: 154 ------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK---- 191
                             +     DR   L ARN P ++++ V+ +NV ++L        
Sbjct: 180 RSGKGKMRGRKYRKPKGPLIVVDEDRGIVLGARNHPGVDIVTVENLNV-ELLAPGTHPGR 238

Query: 192 -LVLSKSAIEALEDR 205
             + +KSA+E LE+ 
Sbjct: 239 FTIYTKSALEKLEEM 253


>gi|94991546|ref|YP_599645.1| 50S ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096]
 gi|94993444|ref|YP_601542.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10750]
 gi|94545054|gb|ABF35101.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096]
 gi|94546952|gb|ABF36998.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10750]
          Length = 98

 Score = 84.4 bits (207), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 45/97 (46%)

Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169
           ++   S K   +  + ++ L     KT        AL +   +++   + +    L+ARN
Sbjct: 1   MKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARN 60

Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +PN+ +      +V DI+   KL+++K AI  +E+  
Sbjct: 61  LPNVTVATAATASVLDIVNADKLLVTKEAISTIEEVL 97


>gi|195453977|ref|XP_002074029.1| GK12825 [Drosophila willistoni]
 gi|194170114|gb|EDW85015.1| GK12825 [Drosophila willistoni]
          Length = 427

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 36  VSVYTEKNEAVKEKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQPYAVSELAGHQTSAES 95

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 96  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTYRRWHRKVNVNQRRYALVS 155

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS--------- 149
           A+          S     + +    +V+ + V K  KTK  V   R L +          
Sbjct: 156 AIAASGVPALVQSKGHIIDGVSEFPLVVSDEVQKLQKTKQAVVFLRRLKIWADIQKVYKS 215

Query: 150 -----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                +     D   + A RNIP I  + V  +N+  +      
Sbjct: 216 QRFRAGRGTMRDRRRIARRGPLVVYHKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHV 275

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 276 GRFVIWTESAFSRLNDLF 293


>gi|324513506|gb|ADY45549.1| 60S ribosomal protein L4 [Ascaris suum]
          Length = 505

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 54/253 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V N   E          +F    +  I+  +       KR        +  +  +E  
Sbjct: 163 VTVYNEKNEPTETQIKLPGVFRAPIRPDIVNFIHDQIRKNKRQPYAVSTEAGHQTSAESW 222

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 223 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVYRRWHRRVNVAQKRYAIVSA 282

Query: 114 LS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS---------- 149
           L+        +   + I        V+ + +    KT+  VT  R   +           
Sbjct: 283 LAASGVPGLVQARGHIIDQIPEVPFVVTDKIEAFRKTREAVTFLRRSHVWADIEKVYNSK 342

Query: 150 ----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                               +     D     A RNIP ++L  V  +N+  I       
Sbjct: 343 RYRAGKGKGRNRRYKSKLGPVVVYSQDNGVVKAFRNIPGVDLQCVDRLNLLKIAPGGHMG 402

Query: 192 --LVLSKSAIEAL 202
             ++ ++SA   L
Sbjct: 403 RLIIWTESAFRKL 415


>gi|70909603|emb|CAJ17227.1| ribosomal protein L4e [Biphyllus lunatus]
          Length = 404

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 57/255 (22%)

Query: 4   LSVRNLDGEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +SV +   +      I++   +F    +  ++  V +  S   R        +  +  +E
Sbjct: 10  VSVYDEKSKQVTESNIALP-AVFKAPIRPDVVNFVHQQISMNHRQPYSVSDKAGHQTSAE 68

Query: 57  VAYTGSK---MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG     +   +G G  R    +      GG+ F P          +    R  AL 
Sbjct: 69  SWGTGRAVAHIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNINQRRYALA 128

Query: 112 HAL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS-------- 149
            A+          S     + I    +V+ + + +  KTK  VT  R +           
Sbjct: 129 SAVAASGVPALVLSKGHVIDQIPELPLVVSDKIQELKKTKEAVTFLRRVKAWGDIQKVYK 188

Query: 150 ------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                 +     D   + A RNIP I+L+ V  +++  +     
Sbjct: 189 SQRFRAGKGKMRNRRRIQRKGPLVVYSKDDGLRRAFRNIPGIDLISVDKLSLLKLAPGGH 248

Query: 192 ----LVLSKSAIEAL 202
               ++ ++SA + L
Sbjct: 249 VGRFVIWTESAFQKL 263


>gi|302408459|ref|XP_003002064.1| 54S ribosomal protein YmL6 [Verticillium albo-atrum VaMs.102]
 gi|261358985|gb|EEY21413.1| 54S ribosomal protein YmL6 [Verticillium albo-atrum VaMs.102]
          Length = 303

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 44/205 (21%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           L  ++ +L   + ++    R G   +K R EV  +  K++ QKG GRAR  +K     RG
Sbjct: 89  LPLRRDLLHLAVIYEGDAHRQGTGSTKTRWEVHGSHRKVHPQKGLGRARVGTKQSPIRRG 148

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRF-- 143
           GG                 V  +A R ALS ++   +++V ++   +    +        
Sbjct: 149 GG-----------------VYDVAWRTALSYRYRRGELLVCEDG-MELPLPRDFTDLLLA 190

Query: 144 ------------------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
                                           L I   +    F        +   L V 
Sbjct: 191 GYVDEPVARQYRRKWTEQVLAANAWGRADGRTLFITADKRPLLFDSMVDAGMHGRCLEVG 250

Query: 180 GINVYDILRCSKLVLSKSAIEALED 204
            ++V D+L   ++V+ ++A+  L +
Sbjct: 251 DVDVKDLLEEGRVVIERAALRELLE 275


>gi|322784371|gb|EFZ11342.1| hypothetical protein SINV_03492 [Solenopsis invicta]
          Length = 424

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           ++V     E  G  IS+   +F    +  I+  V +  S   R        +  +  +E 
Sbjct: 10  ITVYTEKSEPSGDTISLP-SVFKAPIRPDIVNVVHQLISTNIRQPYCVSKEAGHQTSAES 68

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P        H +    +  AL  
Sbjct: 69  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHHRVNVNQKRYALVS 128

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           A+          S      ++    +V+ + + +  KTK  V   R +   N +      
Sbjct: 129 AIAASGVPALVQSKGHLIQEVPEFPLVVSDKIQEYTKTKQAVIFLRRIKAWNDIQKVYKS 188

Query: 159 L--------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D+  + A RNIP ++L+ +  +N+  +      
Sbjct: 189 QRFRAGKGKMRNRRRIQRRGPLIVYGHDQGIRKAFRNIPGVSLMNINKMNLLKLAPGGHV 248

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ +KSA E L+  +
Sbjct: 249 GRFVIWTKSAFEQLDALY 266


>gi|73997307|ref|XP_852986.1| PREDICTED: similar to ribosomal protein L4 [Canis familiaris]
          Length = 411

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 77/255 (30%), Gaps = 61/255 (23%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR---- 111
             TG           AR    +      GG+ F P          +    +  A+     
Sbjct: 67  WGTGRA--------VARIPRGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALA 118

Query: 112 ------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC---- 157
                   +S      ++    +V+++ V    KTK  V   + L   N +         
Sbjct: 119 ASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRL 178

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192
                                   D     A RNIP I LL V  +N+  +     +   
Sbjct: 179 RAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRF 238

Query: 193 -VLSKSAIEALEDRF 206
            + ++SA   L+D +
Sbjct: 239 CIWTESAFRKLDDLY 253


>gi|24650747|ref|NP_524538.2| ribosomal protein L4 [Drosophila melanogaster]
 gi|56405290|sp|P09180|RL4_DROME RecName: Full=60S ribosomal protein L4; AltName: Full=L1
 gi|10726816|gb|AAG22173.1| ribosomal protein L4 [Drosophila melanogaster]
 gi|17862306|gb|AAL39630.1| LD21756p [Drosophila melanogaster]
 gi|220946742|gb|ACL85914.1| RpL4-PA [synthetic construct]
 gi|220956346|gb|ACL90716.1| RpL4-PA [synthetic construct]
          Length = 401

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 10  VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           A+          S     + +    +V+ + V K  KTK  V   R L +   +      
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFARLNDLF 267


>gi|194907117|ref|XP_001981490.1| GG11580 [Drosophila erecta]
 gi|195503641|ref|XP_002098736.1| RpL4 [Drosophila yakuba]
 gi|190656128|gb|EDV53360.1| GG11580 [Drosophila erecta]
 gi|194184837|gb|EDW98448.1| RpL4 [Drosophila yakuba]
          Length = 401

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 10  VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           A+          S     + +    +V+ + V K  KTK  V   R L +   +      
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFARLNDLF 267


>gi|167518295|ref|XP_001743488.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778587|gb|EDQ92202.1| predicted protein [Monosiga brevicollis MX1]
          Length = 364

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 76/256 (29%), Gaps = 56/256 (21%)

Query: 2   IELSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
            +++V +  DG  KG  ++   +F    +  ++  V    S  +R        +  +  +
Sbjct: 5   PQVTVFSAEDGSAKGSTTMP-AVFTAPIRTDVVHFVHTNMSKNRRQPYAVKDSAGHEHSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G +R    +       G+ F P          + K  R  A 
Sbjct: 64  ESWGTGRAVSRIPRVSGGGTSRSGQGAFGNMCRKGRMFAPTKVWRHWNRRINKNQRRYAT 123

Query: 111 RHALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFR------------ 144
             AL+       +              +VI++ V    KT   V   +            
Sbjct: 124 ASALAASALPALVEARGHRIGDLPQVPLVIESSVETFQKTAKAVELLKAVGAFEDVERSR 183

Query: 145 --------ALDLSNALII------DGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                        N   I           +     A RN+P ++   V  +N+  +    
Sbjct: 184 ESRKLRPGHGKWRNRRHIQRRGPLVVYGKNTGVVEAFRNLPGVDTCSVDALNLLQLAPGG 243

Query: 191 KL----VLSKSAIEAL 202
            +    V ++ A   L
Sbjct: 244 HVGRFIVWTEDAFNKL 259


>gi|237829767|ref|XP_002364181.1| 60s ribosomal protein L4, putative [Toxoplasma gondii ME49]
 gi|77696463|gb|ABB00910.1| 60S ribosomal subunit protein L4 [Toxoplasma gondii]
 gi|211961845|gb|EEA97040.1| 60s ribosomal protein L4, putative [Toxoplasma gondii ME49]
 gi|221481095|gb|EEE19503.1| 60S ribosomal protein L4, putative [Toxoplasma gondii GT1]
 gi|221507043|gb|EEE32647.1| 60S ribosomal protein L4, putative [Toxoplasma gondii VEG]
          Length = 416

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 77/257 (29%), Gaps = 59/257 (22%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV    DG   G  S+   +F    +  ++  V    +  +R        +  +  +E 
Sbjct: 8   VSVYKPEDGTASGT-SLMPSVFLSPLRPDLVRFVHTNMAKNRRQPYGVAPNAGYQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G  R    +      GG  F P          +    +  A+  
Sbjct: 67  WGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGGMFAPNKTWRRWHRKVNVTQKRHAVAS 126

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRF--------------- 143
                      ++     +++    +V+   + K  KT+  V                  
Sbjct: 127 AVAATGLPALVMARGHRIDEVPELPLVVSEKLEKVSKTREAVKILETLGCTAELERVRAS 186

Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                        R   +    ++   + D     A RNIP + L  V  +N+  +    
Sbjct: 187 AKKLRAGKGKMRGRRTHMRRGPLVVYAE-DNGVTRAFRNIPGVELCKVDSLNLLQLAPGG 245

Query: 191 KL----VLSKSAIEALE 203
            L    + + SA + L+
Sbjct: 246 ALGRFCLYTASAFKRLQ 262


>gi|268306392|gb|ACY95317.1| ribosomal protein L4 [Manduca sexta]
          Length = 439

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 80/260 (30%), Gaps = 59/260 (22%)

Query: 4   LSVRNLDGEDK--GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +SV +   E      I +   +F    +  ++  V    S   R        +  +  +E
Sbjct: 10  VSVYSEKSEVVAGKTIPLP-FVFKAPIRPDLVNDVHVSMSKNARQPYCVSKEAGHQTSAE 68

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108
              TG    ++   +G G  R    +      GG+ F P          +  + R     
Sbjct: 69  SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAAVA 128

Query: 109 ------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
                         R  + +K     ++V D  V +  KTK  V   R +   + ++   
Sbjct: 129 AALAASGVPALVQARGHIIEKIPELPLVVSDK-VQEITKTKQAVIFLRRVKAWSDVLKVY 187

Query: 157 C--------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                                        D+    A RNIP + +L V  +N+  +    
Sbjct: 188 KSQRLRAGKGKMRNRRRVQRKGPLIIYHKDKGLSRAFRNIPGVEMLNVNKLNLLKLAPGG 247

Query: 191 KL----VLSKSAIEALEDRF 206
            L    + ++SA + L+  F
Sbjct: 248 HLGRFIIWTQSAFDRLDALF 267


>gi|240104059|ref|YP_002960368.1| 50S ribosomal protein L4P [Thermococcus gammatolerans EJ3]
 gi|259491577|sp|C5A285|RL4_THEGJ RecName: Full=50S ribosomal protein L4P
 gi|239911613|gb|ACS34504.1| LSU ribosomal protein L4P (rpl4P) [Thermococcus gammatolerans EJ3]
          Length = 255

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 85/255 (33%), Gaps = 51/255 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +++ V NL+GE    I +   +F+   +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFNLEGEPVEEIELP-KVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  M   +        +  V   RGG +   P     +   + KK R LA+  A++
Sbjct: 60  NIGKGHGMARVERIKTPPRFAAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIA 119

Query: 116 DKFCSN---------------DIMVID--NLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                +                ++V+D    V K  +T+ +  +    D       +   
Sbjct: 120 ATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWDDIERAKRNTKI 179

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
                                   +      ARN P ++++ V  + V  +       +L
Sbjct: 180 RAGKGKMRGRRYKKAKGPLIVVAKNEGIVQGARNHPGVDVVTVDNLGVELLAPGTHPGRL 239

Query: 193 -VLSKSAIEALEDRF 206
            + +K AIE L++ +
Sbjct: 240 TIWTKGAIERLKEIY 254


>gi|110668740|ref|YP_658551.1| 50S ribosomal protein L4P [Haloquadratum walsbyi DSM 16790]
 gi|121687180|sp|Q18GF0|RL4_HALWD RecName: Full=50S ribosomal protein L4P
 gi|109626487|emb|CAJ52948.1| ribosomal protein L4.eR [Haloquadratum walsbyi DSM 16790]
          Length = 248

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 82/253 (32%), Gaps = 54/253 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           +E ++ NL+G+    + +   +F    +  ++ R +      ++        +  +  +E
Sbjct: 1   METTIHNLNGDKADTLELP-AVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115
              +G  M               V Q   G KA  P         +  K R LA + A++
Sbjct: 60  SFGSGRGMAHVPRENGQAR---RVPQAVSGRKAHPPKAEKDQSKSVNTKERKLAFQSAVA 116

Query: 116 DKFCSNDI--------------MVIDNLVSKECKTKYLVTRF------------------ 143
                + +              +V+ +   +  KT+ +V                     
Sbjct: 117 ATADPSQVEERGHQFENDVELPLVVSDEFEELIKTQEVVDVLESLGVHADIVRSDENKSI 176

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
                  R         I     D     AARN+   +++    ++  D+    +  +L 
Sbjct: 177 RAGRGKTRGRKYRRPKSILFITSDEP-SKAARNLAGADVVTAANVSAEDLAPGTQPGRLT 235

Query: 193 VLSKSAIEALEDR 205
           V ++SAI+ + DR
Sbjct: 236 VYTESAIKEVADR 248


>gi|212275964|ref|NP_001130508.1| hypothetical protein LOC100191607 [Zea mays]
 gi|195619738|gb|ACG31699.1| 60S ribosomal protein L4 [Zea mays]
          Length = 404

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 55/240 (22%)

Query: 22  DIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQKGTGRA 73
           D+     +  I+  V +  S   R        +  +  +E   TG    ++    G G  
Sbjct: 29  DVLRAPIRPDIVRFVHKLLSCNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTH 88

Query: 74  RHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALS-------DKFCSNDI- 123
           R    +      GG+ F P          +   +R +A+  ALS            + + 
Sbjct: 89  RAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIHLRRVAIASALSATAVPSLVLARGHRVE 148

Query: 124 ------MVIDNLVSKECKTKYLVTRFRA---------------------------LDLSN 150
                 +V+ +      KT   +   +                                 
Sbjct: 149 SVPELPLVVSDSAESIEKTAQAINILKQLGAYADAEKAKDSVGIRPGKGKMRNRRYINRK 208

Query: 151 ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
             ++           A RN+P +++  V+ +N+ D+         ++ ++ A + L++ +
Sbjct: 209 GPLVVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVY 268


>gi|84489707|ref|YP_447939.1| 50S ribosomal protein L4P [Methanosphaera stadtmanae DSM 3091]
 gi|109893604|sp|Q2NFV7|RL4_METST RecName: Full=50S ribosomal protein L4P
 gi|84373026|gb|ABC57296.1| 50S ribosomal protein L1e [Methanosphaera stadtmanae DSM 3091]
          Length = 259

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 96/260 (36%), Gaps = 58/260 (22%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
           M +++V +L G+    I + E IF  + +  ++ R +      +         +  +  +
Sbjct: 1   MAKINVYSLKGDITEEIELPE-IFEEEYRPDVIKRAVISMQTARIQPWGTDPMAGKRTTA 59

Query: 56  EVAYTGSK---MYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALR 111
           E   +G     +   KG+ +A      V Q  GG KA  P      H  + KK R+LA+R
Sbjct: 60  ESFGSGRGAAMVPRVKGSSKAAF----VPQAIGGRKAHPPRVNTIYHEKINKKERTLAIR 115

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALI---- 153
            A++       +               VID+ +     TK     F+ L + + ++    
Sbjct: 116 SAIAATANKELVEQRGHQVSELEQIPFVIDDEIETVKTTKETREIFKDLGIMDDIVRAKK 175

Query: 154 ----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---R 188
                                 +     DR   L ARN   ++++ V  IN   +     
Sbjct: 176 GRKIKSGKGKLRGRKYRTPKGPLVVVGNDRGISLGARNHAGVDVVEVNNINAELLAPGTH 235

Query: 189 CSKL-VLSKSAIEALEDRFK 207
             +L + +KSAIE L D F+
Sbjct: 236 AGRLTIYTKSAIEKLGDLFQ 255


>gi|74004017|ref|XP_859663.1| PREDICTED: similar to ribosomal protein L4 isoform 4 [Canis
           familiaris]
          Length = 411

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 77/255 (30%), Gaps = 61/255 (23%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR---- 111
             TG           AR    +      GG+ F P          +    +  A+     
Sbjct: 67  WGTGRA--------VARIPRGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALA 118

Query: 112 ------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC---- 157
                   +S      ++    +V+++ V    KTK  V   + L   N +         
Sbjct: 119 ASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRM 178

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192
                                   D     A RNIP I LL V  +N+  +     +   
Sbjct: 179 RAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRF 238

Query: 193 -VLSKSAIEALEDRF 206
            + ++SA   L+D +
Sbjct: 239 CIWTESAFRKLDDLY 253


>gi|321479331|gb|EFX90287.1| hypothetical protein DAPPUDRAFT_205304 [Daphnia pulex]
          Length = 370

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 83/258 (32%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           ++V N   E  G  I +   IF    +  I++ V +  S  +R        +  +  +E 
Sbjct: 10  ITVYNEKAEASGTSIQLP-AIFRAPIRPDIVSFVQQQMSMNRRHPYCVSEKAGHQTSAES 68

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    +  AL  
Sbjct: 69  WGTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKIWRRWHRKINVNQKRFALCS 128

Query: 113 AL------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           A+      S       ++        V+ + V +  KTK  V   R L     +      
Sbjct: 129 AVAASGIPSLVMSKGHLINDVPEMPLVVSDKVQEYKKTKQAVVLLRRLRAWTDVQKVYKT 188

Query: 159 --------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D+    A RNIP ++++ V  +N+  +     +
Sbjct: 189 RRFRAGKGKMRNRRRTSKLGPLVIYGRDQGLTKAFRNIPGVSMISVNKLNLMKLAPGGHV 248

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA + L   +
Sbjct: 249 GRFCIWTESAFQRLNALY 266


>gi|168005784|ref|XP_001755590.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693297|gb|EDQ79650.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 403

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V+ +DG DKG  +    +F    +  ++A V    +  KR        +  +  +E  
Sbjct: 10  VTVQGVDGADKGAQATLPAVFLAPIRPDVVATVHTALAKNKRQPYAVSTKAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 70  GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKVNLNQKRYAIASA 129

Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR--------------- 144
           L+            + I       +V+ +      KT   V   +               
Sbjct: 130 LAASAVPSLVLARGHRIEQVPEVPLVLGDGAEGIEKTSLAVKLLKSVGAYTDVEKVKASH 189

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                               ++           + RNIP + ++ V  +N+  +     L
Sbjct: 190 AIRAGKGKMRNRRYVSRRGPLVVYGTEGAKLVKSFRNIPGVEVVSVNRLNLLQLAPGGHL 249

Query: 193 ----VLSKSAIEALEDRF 206
               V +KSA E L+  +
Sbjct: 250 GRFIVWTKSAFEKLDSIY 267


>gi|222480856|ref|YP_002567093.1| ribosomal protein L4/L1e [Halorubrum lacusprofundi ATCC 49239]
 gi|254803738|sp|B9LSS6|RL4_HALLT RecName: Full=50S ribosomal protein L4P
 gi|222453758|gb|ACM58023.1| ribosomal protein L4/L1e [Halorubrum lacusprofundi ATCC 49239]
          Length = 248

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 83/255 (32%), Gaps = 58/255 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +  +V +LDG D G + +   IF    +  ++ R +      ++        +  +  +E
Sbjct: 1   MNATVHDLDGGDAGSVELP-AIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115
              +G  +     +         V     G  A  P         L  K R LA+R A++
Sbjct: 60  SFGSGRGLAHIPRSENVAR---RVPNAVSGRAAHPPKAEKDQTKSLNDKERQLAIRSAIA 116

Query: 116 DKFCSNDI--------------MVIDNLVSKECKTKYLVTRF------------------ 143
               +  +              +V+ +      KT+  +                     
Sbjct: 117 ATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADADIERAEEGRSV 176

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSK 191
                    R      ++++   +       AARN+  +++   + +N  D+       +
Sbjct: 177 RAGRGKTRGRKYSQPKSVLVVTSEEP---SRAARNLSGVDVATAREVNAEDLAPGAHPGR 233

Query: 192 L-VLSKSAIEALEDR 205
           L + ++SAIE + DR
Sbjct: 234 LTLWTESAIEEVADR 248


>gi|194689338|gb|ACF78753.1| unknown [Zea mays]
 gi|224031407|gb|ACN34779.1| unknown [Zea mays]
          Length = 404

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 55/240 (22%)

Query: 22  DIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQKGTGRA 73
           D+     +  I+  V +  S   R        +  +  +E   TG    ++    G G  
Sbjct: 29  DVLRAPIRPDIVRFVHKLLSCNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTH 88

Query: 74  RHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALS-------DKFCSNDI- 123
           R    +      GG+ F P          +   +R +A+  ALS            + + 
Sbjct: 89  RAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIHLRRVAIASALSATAVPSLVLARGHRVE 148

Query: 124 ------MVIDNLVSKECKTKYLVTRFRA---------------------------LDLSN 150
                 +V+ +      KT   +   +                                 
Sbjct: 149 SVPELPLVVSDSAESIEKTAQAINILKQLGAYADAEKAKDSVGIRPGKGKMRNRRYINRK 208

Query: 151 ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
             ++           A RN+P +++  V+ +N+ D+         ++ ++ A + L++ +
Sbjct: 209 GPLVVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVY 268


>gi|256810688|ref|YP_003128057.1| 50S ribosomal protein L4P [Methanocaldococcus fervens AG86]
 gi|256793888|gb|ACV24557.1| 50S ribosomal protein L4P [Methanocaldococcus fervens AG86]
          Length = 252

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 93/256 (36%), Gaps = 56/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++  V NL+GE    I +   +F  + +  ++ R        +         +  +  ++
Sbjct: 1   MKAVVYNLNGEAVKEIDLP-AVFEEEYRPDLIRRAFLSAFTARLQPKGSDPLAGMRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
               G      +     +  +  V Q  GG +A  P    I    + KK R  A++ A++
Sbjct: 60  NIGKGHG--RARVDRVPQGWAARVPQAVGGRRAHPPKVEKILWERVNKKERIKAIKSAIA 117

Query: 116 DKFCSNDI-------------MVIDNLVSKECKTKYLVTRF------------------- 143
                  +             +V+++   +  KTK +   F                   
Sbjct: 118 ATANPELVKERGHVFDNENLPIVVESSFEELQKTKDVFAVFEKLGISSDVIRAKNGIKIR 177

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191
                    R     + L++ G + +    LA+RN+P ++++  + + +  +       +
Sbjct: 178 AGKGKMRGRRYKKPRSVLVVVGDKCN--AILASRNLPGVDVITAKDLGIIHLAPGGVAGR 235

Query: 192 L-VLSKSAIEALEDRF 206
           L V ++SA+E L++RF
Sbjct: 236 LTVWTESALEKLKERF 251


>gi|315304953|ref|ZP_07875045.1| 50S ribosomal protein L4 [Listeria ivanovii FSL F6-596]
 gi|313626678|gb|EFR95719.1| 50S ribosomal protein L4 [Listeria ivanovii FSL F6-596]
          Length = 86

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 46/85 (54%)

Query: 122 DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
            ++V++ L     KTK      + + +    +I       N +L+ARN+  I ++P + I
Sbjct: 1   KLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESI 60

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
           +V ++ +  KL+++K+A+E +E+  
Sbjct: 61  SVLEVAKHDKLIITKAAVEKVEEVL 85


>gi|289191590|ref|YP_003457531.1| 50S ribosomal protein L4P [Methanocaldococcus sp. FS406-22]
 gi|288938040|gb|ADC68795.1| 50S ribosomal protein L4P [Methanocaldococcus sp. FS406-22]
          Length = 252

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 93/256 (36%), Gaps = 56/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           ++  V NL+GE    I +   +F  + +  ++ R        +         +  +  ++
Sbjct: 1   MKAVVYNLNGEAVKEIDLP-AVFEEEYRPDLIKRAFLSAFTARLQPKGSDPMAGMRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
               G      +     +  +  V Q  GG +A  P    I    + KK R  A++ A++
Sbjct: 60  NIGKGHG--RARVDRVPQGWAARVPQAVGGRRAHPPKVEKILWERVNKKERIKAIKSAIA 117

Query: 116 DKFCSNDI-------------MVIDNLVSKECKTKYLVTRF------------------- 143
                  +             +V+++   +  KTK +   F                   
Sbjct: 118 ATANPELVKERGHIFETENLPIVVESSFEELQKTKDVFAVFEKLGISSDVIRAKNGIKIR 177

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191
                    R     + L++ G + +    LA+RN+P ++++  + + +  +       +
Sbjct: 178 AGKGKMRGRRYKKPRSILVVVGDKCN--AILASRNLPGVDVITAKDLGIIHLAPGGVAGR 235

Query: 192 L-VLSKSAIEALEDRF 206
           L V ++SA+E L++RF
Sbjct: 236 LTVWTESALEKLKERF 251


>gi|312065488|ref|XP_003135815.1| 60S ribosomal protein L4 [Loa loa]
 gi|307769036|gb|EFO28270.1| 60S ribosomal protein L4 [Loa loa]
          Length = 394

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 76/253 (30%), Gaps = 54/253 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +++ N   E          +F    +  I++ V       KR        +  +  +E  
Sbjct: 7   VTIYNDKSEATDSQIKLPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSIEAGHQTSAESW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWHRRVNVAQKRYAMVSA 126

Query: 114 LS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159
           ++        +   + I        V+ + V    KTK  V+  R       +       
Sbjct: 127 IAASGVPALVQARGHIIDQIPEVPFVVVDKVESFKKTKEAVSFLRRSHFWADIEKVYNSK 186

Query: 160 --------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNIP ++LLPV  +N+  +     L 
Sbjct: 187 RNRAGKGKGRNRRHKAKLGPLIVYSQDNGIVKAFRNIPGVHLLPVDHLNLLKVAPGGHLG 246

Query: 193 ---VLSKSAIEAL 202
              + ++SA   L
Sbjct: 247 RLIIWTESAFRKL 259


>gi|325958532|ref|YP_004289998.1| 50S ribosomal protein L4P [Methanobacterium sp. AL-21]
 gi|325329964|gb|ADZ09026.1| 50S ribosomal protein L4P [Methanobacterium sp. AL-21]
          Length = 260

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 89/263 (33%), Gaps = 59/263 (22%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
           M ++ V +L+GE    I + E IF    +  ++ R +      +         +  +  +
Sbjct: 1   MEKIKVYSLEGEVVDEIELPE-IFTEVYRPDLIKRAVISSQTARIQPWGTDPMAGKRTTA 59

Query: 56  EVAYTGSK--MYVQKGTGRARHSSKSVSQFRGGGKAFGPVP---IIGVHALPKKVRSLAL 110
           +   +G    M  +    R    SK+    +  G      P    I    + +K R LA+
Sbjct: 60  KSFGSGRGAAMVPRVKGSRHPAGSKAAFIPQAIGGRKAHPPKTERIIHEKINRKERRLAI 119

Query: 111 RHALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRF------------- 143
           R A++       +               V+D+ +    +TK     F             
Sbjct: 120 RSAVAATANREIVEARGHKIQNLDQVPFVVDDELETVKRTKDTREIFAKLGLLDDVCRAK 179

Query: 144 ---------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL- 187
                          +       L++ G   D+   L ARN   ++++ V  +N   +  
Sbjct: 180 AGRTIRAGRGKMRGRKYKTSKGPLLVVGE--DKGISLGARNHAGVDVVVVNHLNAELLAP 237

Query: 188 --RCSKL-VLSKSAIEALEDRFK 207
                +L + +KSA+E L + FK
Sbjct: 238 GTHPGRLTIYTKSAVEKLGELFK 260


>gi|154150076|ref|YP_001403694.1| 50S ribosomal protein L4P [Candidatus Methanoregula boonei 6A8]
 gi|166234683|sp|A7I5P0|RL4_METB6 RecName: Full=50S ribosomal protein L4P
 gi|153998628|gb|ABS55051.1| ribosomal protein L4/L1e [Methanoregula boonei 6A8]
          Length = 248

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 93/257 (36%), Gaps = 62/257 (24%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC---------SKSK 52
           ++  V+ ++G     I +   +F+ + +  ++ + +      +R            S + 
Sbjct: 1   MKAQVKTIEGGVAKDIELP-AMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAV 59

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGP-VPIIGVHALPKKVRSLALR 111
           G            ++ G+  A+     V Q +GG +A  P    + +  +  K +  A R
Sbjct: 60  GWGSGRGASHVPRLKNGSRAAK-----VPQAKGGREAHPPVTAKVLIKEINAKEKQKAFR 114

Query: 112 HALSDKFCSNDI------------MVIDNLVSKECKTKYLVTRF---------------- 143
            A++    ++ I            ++ ++      KT+ +++                  
Sbjct: 115 SAVAASIRADLISSRGHRFEGTVPLIFEDKFENLAKTQEVISALTNIGVYSDIERSKESR 174

Query: 144 -----------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRC 189
                      R      +L+I     +     AARN+  ++++ V  +NV  +   ++ 
Sbjct: 175 KVRAGRGKLRGRRYKQRKSLLIVTSGPE---FRAARNLAGVDVVTVDQLNVEHLAPGMQA 231

Query: 190 SKL-VLSKSAIEALEDR 205
            +L V ++SA+  LE R
Sbjct: 232 GRLTVWTESAVIRLEGR 248


>gi|116198121|ref|XP_001224872.1| hypothetical protein CHGG_07216 [Chaetomium globosum CBS 148.51]
 gi|88178495|gb|EAQ85963.1| hypothetical protein CHGG_07216 [Chaetomium globosum CBS 148.51]
          Length = 365

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 74/265 (27%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V   DG+  G   V   +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 5   PTVTVIGADGKATGATEVLPKVFSAPIRPDIVKHVHTGMAKNKRQPYSVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108
              TG    ++    G G  R    +       G+ F P          + +  +     
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKINQGQKRFATA 124

Query: 109 ------------ALRHALSDKFCSNDIMVI--------------------------DNLV 130
                         R           ++V                           D   
Sbjct: 125 SALAASAVAPLLMARGHQVATVPEVPLVVDSSAVAGEAVAKTAAALALLKAVGAGADVEK 184

Query: 131 SKECKT----KYLVTRFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
            K  K     K  +   R       L++   + D ++     RNI  +   PV  +N+  
Sbjct: 185 VKGSKKVRAGKGKLRGRRHRQRRGPLVVYSAEADGKDLVKGFRNITGVETCPVDALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + +AI+ L+  +
Sbjct: 245 LAPGGHLGRFIVWTSAAIKELDAVY 269


>gi|269866679|ref|XP_002652355.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220062675|gb|EED41702.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 160

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 41  SWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA 100
               R   +  K R+ V   G K + QKGTGRAR  S     +RGGG+AF          
Sbjct: 1   MAGMRSANAVQKNRAAVRGGGRKPWKQKGTGRARAGSIRSPIWRGGGRAFPGGNENYTQK 60

Query: 101 LPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD 160
           + KK+ + A+R  L++      + +I      E +++            N L++ G ++ 
Sbjct: 61  VNKKMWAGAMRTVLAELLRQGRLQIIQQEDFGEPRSRLGRDWLSRAGGDNVLLVMG-EVP 119

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILR 188
            N  L  RN P + +   + +   D+L 
Sbjct: 120 LNLFLGLRNFPRVGIAGWKDVGPADLLN 147


>gi|254172972|ref|ZP_04879646.1| ribosomal protein, L4/L1 family [Thermococcus sp. AM4]
 gi|214033128|gb|EEB73956.1| ribosomal protein, L4/L1 family [Thermococcus sp. AM4]
          Length = 255

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 51/255 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +++ V NL+GE    I +   +F+   +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFNLEGEPVEEIELP-KVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  M   +        +  V   RGG +   P     +   + KK R LA+  A++
Sbjct: 60  NIGKGHGMARVERIKTPPRFAAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIA 119

Query: 116 DKFCSN---------------DIMVIDN--LVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                +                ++V+D+   V K  +T+ +  +    D       +   
Sbjct: 120 ATANPDLVKARGHVTDNVPAFPLVVVDDLEKVFKTAQTREIFKKLGIWDDIERAKRNTKI 179

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
                                   +      ARN P ++++ V  + V  +       +L
Sbjct: 180 RAGKGKMRGRRYKKAKGPLIVVAKNEGIVQGARNHPGVDVVTVDNLGVELLAPGTHPGRL 239

Query: 193 -VLSKSAIEALEDRF 206
            V +K AIE L + +
Sbjct: 240 TVWTKGAIERLREIY 254


>gi|325119378|emb|CBZ54931.1| 50S ribosomal protein L4P, related [Neospora caninum Liverpool]
          Length = 416

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 77/257 (29%), Gaps = 59/257 (22%)

Query: 4   LSVR-NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV    DG   G  S+   +F    +  ++  V    +  +R        +  +  +E 
Sbjct: 8   VSVYKTEDGTASGT-SLMPSVFLSPLRPDLVRFVHTNLAKNRRQPYGVAPNAGYQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G  R    +      GG  F P          +    +  A+  
Sbjct: 67  WGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGGMFAPNKTWRRWHRKVNVTQKRHAVAS 126

Query: 113 ALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF--------------- 143
           A++            + I       +V+   V K  KT+  V                  
Sbjct: 127 AIAATGLPALVMARGHRIDEVPELPLVVSEKVEKVTKTREAVKILETLGCGAELERVRAS 186

Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                        R   +    ++   + D     A RNIP + L  V  +N+  +    
Sbjct: 187 AKKLRAGKGKMRGRRTHIRRGPLVVYAE-DNGVTRAFRNIPGVELCKVDSLNLLQLAPGG 245

Query: 191 KL----VLSKSAIEALE 203
            L    + + SA + L+
Sbjct: 246 ALGRFCLYTASAFKRLQ 262


>gi|50288489|ref|XP_446674.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525982|emb|CAG59601.1| unnamed protein product [Candida glabrata]
          Length = 285

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 35/230 (15%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E    I VS ++ +L  ++ IL + + +++ ++R+G S   GRS+  ++  K+  QKG+G
Sbjct: 50  EPNSFIPVSANVLSLPLRRDILWQAVVYENDKRRVGASNPPGRSDKGFSRKKLLPQKGSG 109

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI---- 126
           +AR    +      GG+A     P      L KKV S A   ALS ++   ++ VI    
Sbjct: 110 KARVGDANSPIRHNGGRALARTAPNDYSTELNKKVYSTAFFTALSHQYKLGNLFVIGKEG 169

Query: 127 -------------------DNLVSKECKTKYLVTRFRALD----------LSNALIIDGC 157
                               +   K  K   L   +  +               L+    
Sbjct: 170 EIAKNDVEILDIDLGQKPVPSDKIKPNKMAELENEYCEMYFKKFLAENNLFKQRLLFVTN 229

Query: 158 QLDRNFQLAARNIP-NINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +       A+      I+++  + + V DILR  K+ +   A++ +  ++
Sbjct: 230 EPREKLLHASDKYKDKIDIIQKEHLEVNDILRAGKIYIELEALKGISAKY 279


>gi|165940381|ref|ZP_02228894.1| 50S ribosomal protein L4 [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165911690|gb|EDR30354.1| 50S ribosomal protein L4 [Yersinia pestis biovar Orientalis str.
           IP275]
          Length = 92

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 115 SDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNIN 174
           S+    + +++++    +  KTK L  + + + L + LI+ G +LD N  LAARN+  ++
Sbjct: 1   SELVRQDRLIIVEKFSVEAPKTKLLAQKLKDMALEDVLIVTG-ELDENLFLAARNLYKVD 59

Query: 175 LLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +  V GI+   ++   K+V++  A++ +E+  
Sbjct: 60  VRDVAGIDPVSLIAFDKVVMTADAVKQVEEML 91


>gi|50548125|ref|XP_501532.1| YALI0C06820p [Yarrowia lipolytica]
 gi|49647399|emb|CAG81835.1| YALI0C06820p [Yarrowia lipolytica]
          Length = 363

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 56/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
            ++SV  + G D GV  V   +F    +  I+  V    +  KR   + +     +  +E
Sbjct: 5   PQVSVHGVSGSDAGVTIVLPAVFKAPIRPDIVHSVWTGVAKNKRQAYAVASNAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G+G  R    +      GG+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVGGSGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHVKVNLNEKRYATA 124

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR------------- 144
            A++            + +       +V+ N +    KTK  V   +             
Sbjct: 125 SAIAASAVAPLVLARGHRVETIAEVPLVVSNDIESLTKTKDAVAALKAVGAHRDVARVVK 184

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                                 ++   + ++    A RNIP +    V+ +N+  +   S
Sbjct: 185 SKTIRAGKGKLRNRRWTQRRGPLVVYSE-NKGLVKAFRNIPGVETCDVRHLNLLQLAPGS 243

Query: 191 K----LVLSKSAIEAL 202
                ++ ++ A   L
Sbjct: 244 HLGRFVIWTEGAFNLL 259


>gi|170578226|ref|XP_001894323.1| 60S ribosomal protein L4 [Brugia malayi]
 gi|158599144|gb|EDP36835.1| 60S ribosomal protein L4, putative [Brugia malayi]
          Length = 385

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 77/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V N   E          +F    +  I++ V       KR        +  +  +E  
Sbjct: 7   VTVYNDKSEPTDTQIRLPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWHRRVNVAQKRYAMVSA 126

Query: 114 LS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS---------- 149
           ++        +   + I        V+ + V    KTK  V+  R               
Sbjct: 127 IAASGIPALVQARGHIIDQIPEVPFVVVDKVESFKKTKEAVSFLRRSHFWADIEKVYNSK 186

Query: 150 ----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               +     D     A RNIP ++LLPV  +N+  +     L 
Sbjct: 187 RNRAGKGKGRNRRYKAKLGPLVVYNQDNGVVKAFRNIPGVHLLPVDKLNLLKVAPGGHLG 246

Query: 193 ---VLSKSAIEALEDRF 206
              + ++SA   L   +
Sbjct: 247 RLIIWTESAFRKLNRIY 263


>gi|325068031|ref|ZP_08126704.1| 50S ribosomal protein L4P [Actinomyces oris K20]
          Length = 69

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 3  ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           + V +  G+  G + +  ++F       ++ +V+  Q    R G   +K R +V   G 
Sbjct: 6  TVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDVRGGGR 65

Query: 63 KMYV 66
          K Y 
Sbjct: 66 KPYR 69


>gi|288560109|ref|YP_003423595.1| ribosomal protein L4p Rpl4p [Methanobrevibacter ruminantium M1]
 gi|288542819|gb|ADC46703.1| ribosomal protein L4p Rpl4p [Methanobrevibacter ruminantium M1]
          Length = 254

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 84/256 (32%), Gaps = 52/256 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++++V ++ GE K  I +   IF  + +  ++ R +      +         +  +  +E
Sbjct: 1   MKVNVYSIQGEVKEEIELP-AIFNEEYRPDLIKRAVLSAQSARIQPWGNDPMAGKRTSAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALS 115
              +G    +         ++  V Q  GG KA            +  K R  A+R A++
Sbjct: 60  SWGSGRGAAMVPRIKTGARAA-FVPQAIGGRKAHPVRAAKNHHEKINNKERRFAIRSAVA 118

Query: 116 DKFCSN---------------DIMVIDN--LVSKECKTKYLVTRFRALDLSNALI----- 153
                                 ++V D+   V K  +T+ +       D           
Sbjct: 119 ATVNEELVAGRGHRIENLEQVPVIVEDDLETVKKTSETREIFKALGVYDDVIKAKDSKKI 178

Query: 154 ------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
                             +     D+   L ARN   ++++ V  +N   +       +L
Sbjct: 179 RAGRGKTRGRKYKSGKGPLVVVSEDKGIGLGARNHAGVDVVAVDNLNAELLAPGTHAGRL 238

Query: 193 -VLSKSAIEALEDRFK 207
            + +KSA+E L   F+
Sbjct: 239 TIYTKSAVEKLGGLFQ 254


>gi|156841505|ref|XP_001644125.1| hypothetical protein Kpol_1053p3 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114761|gb|EDO16267.1| hypothetical protein Kpol_1053p3 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 362

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 78/260 (30%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V++L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVQSLTGEATSTALPLPAVFSAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 HALSDKFCSNDIMVIDNLVSKEC--------------KTKYLVTRFR------------- 144
            A++    ++ ++   + V K                KTK  V   +             
Sbjct: 124 SAIAASAVASLVLARGHKVEKIPEIPLVVSKDLESIKKTKEAVAALKAVGAQADLVKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +    V  +++  +    
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKAFRNVPGVETANVASLSLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ ++SA   L+  +
Sbjct: 243 HLGRFVIWTESAFAKLDQVW 262


>gi|168002086|ref|XP_001753745.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695152|gb|EDQ81497.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 403

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V+++DG +K   +    +F    +  ++A V    +  KR        +  +  +E  
Sbjct: 10  VTVQSVDGAEKSAQTTLPAVFLAPIRPDVVATVHTALAKNKRQAYAVSSKAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 70  GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKVNLNQKRYAIASA 129

Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR--------------- 144
           L+            + I       +V+ +      KT   V   +               
Sbjct: 130 LAASAVPSLVLARGHKIEQVPEVPLVLSDGAEAIEKTSAAVKLLKTLGAYTDVEKVKASH 189

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                               ++           A RNIP + ++ V  +N+  +     L
Sbjct: 190 AIRAGKGKMRNRRYVSRRGPLVVYGTEGAKLVKAFRNIPGVEVVSVNRLNLLQLAPGGHL 249

Query: 193 ----VLSKSAIEALEDRF 206
               V +KSA E L+D F
Sbjct: 250 GRFIVWTKSAFEKLDDIF 267


>gi|149234672|ref|XP_001523215.1| hypothetical protein LELG_05441 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453004|gb|EDK47260.1| hypothetical protein LELG_05441 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 297

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 28/217 (12%)

Query: 17  ISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
           I +    F  +   ++ +L   + +++   R+G +    +S+  Y+G K+  QKGTGRAR
Sbjct: 79  IPLPTWFFRTEQPTRRDLLWNAVVYEADADRVGSNYVTLKSDKPYSGRKLRPQKGTGRAR 138

Query: 75  HSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSK 132
             + +        KA     P      L KK    A++ AL+ ++   ++ V  +    K
Sbjct: 139 LGTGNSPHLDNEVKAHAIKGPHDWSTDLNKKQYDQAMQVALTSQYKQGNLFVTQNECQFK 198

Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQ---------------LDRNFQ--------LAARN 169
           +   +   +      L    ++                    D+  +         A R 
Sbjct: 199 QSNLEVAQSFVSTHRLEQLSMLFITDGERENLSQSMRQFFISDKKLENLSKPEKIKALRK 258

Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +    +L  + + V DIL+ +++ + K A+E L  ++
Sbjct: 259 LKG-RVLSKEEVQVRDILKANRVFVEKPALEWLIAKY 294


>gi|50553556|ref|XP_504189.1| YALI0E20493p [Yarrowia lipolytica]
 gi|49650058|emb|CAG79784.1| YALI0E20493p [Yarrowia lipolytica]
          Length = 271

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 11/192 (5%)

Query: 25  ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFR 84
             +  + +L R + +++ R+R+G S   GR ++ Y+  K++ QKG G+AR          
Sbjct: 67  GAQVHKDLLWRAVVYEADRQRVGASNPPGREQMGYSTRKLHKQKGMGKARVGDAGSPTRT 126

Query: 85  GGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDN----LVSKECKTKYL 139
            GG A     P      LPK+V + A+R AL+ ++    + V+D       S +  T + 
Sbjct: 127 QGGFALDRNAPNKMATGLPKQVYASAIRAALTSQYQEGRLFVVDGPCELPESVKDNTTFG 186

Query: 140 VTRFR-----ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
               +             ++D  +   +  L   N+   +++P + I V DIL+   +V+
Sbjct: 187 QQWLQGELGFGKKEMTVFLVDTERPILDSVLGKDNLK-ADIVPKEFIEVRDILKARNVVV 245

Query: 195 SKSAIEALEDRF 206
               ++ L  ++
Sbjct: 246 EYDVLKWLAAKY 257


>gi|190408215|gb|EDV11480.1| 60S ribosomal protein YmL6, mitochondrial precursor [Saccharomyces
           cerevisiae RM11-1a]
 gi|259148550|emb|CAY81795.1| EC1118_1M3_1255p [Saccharomyces cerevisiae EC1118]
          Length = 286

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 29/215 (13%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + V     A   ++ IL R + +++  +R+G S   GRSE  ++  K+  QKG+GRAR  
Sbjct: 58  VPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRRKLMPQKGSGRARVG 117

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--- 132
             +      GG+A     P      LP KV S+A  +ALS ++ S  + VI         
Sbjct: 118 DANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFVIGGEKVDLIS 177

Query: 133 -------------ECKTKYLVTRFRALDLSNAL-----------IIDGCQLDRNFQLAAR 168
                           T      F    +               +    +       ++ 
Sbjct: 178 PTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFLEEFQLKGKRLLFITDKTREGLIKSSD 237

Query: 169 NIP-NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
                ++++  + + V DILR   + +   A+E L
Sbjct: 238 PYKQKVDVIQKELVEVNDILRAQAVFIELEALEYL 272


>gi|156844943|ref|XP_001645532.1| hypothetical protein Kpol_1004p49 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116196|gb|EDO17674.1| hypothetical protein Kpol_1004p49 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 280

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 32/223 (14%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E    + VS        ++ IL + + +++ R+R+G S   GRSE  Y+  K++ QKGTG
Sbjct: 51  EPVSFVPVSSTHLNAPIRRDILWQAVVYENDRRRVGASNPPGRSENGYSRRKLHKQKGTG 110

Query: 72  RARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLV 130
           RAR    +      GG+A     P   V  LP K+ S A  +ALS ++ S +++VI N  
Sbjct: 111 RARVGDANSPTRHNGGQALARTAPNNYVTDLPAKLYSKAFINALSHQYQSGNLIVIGNKD 170

Query: 131 ------------------------SKECKTKY-----LVTRFRALDLSNALIIDGCQLDR 161
                                       +T               +L    ++      +
Sbjct: 171 YRSSTLEEVLEDSSCPTDLNQIELLPSTETGEGADLVFDKFLNEHNLGKKRLLFITSFPK 230

Query: 162 --NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
               +   ++   ++++P + I V DIL+  K+ +   A+  L
Sbjct: 231 FDFMENTQKHSEKVDVIPKELIEVNDILKAQKIFIDLEALSYL 273


>gi|256270863|gb|EEU06001.1| Yml6p [Saccharomyces cerevisiae JAY291]
          Length = 287

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 29/215 (13%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + V     A   ++ IL R + +++  +R+G S   GRSE  ++  K+  QKG+GRAR  
Sbjct: 59  VPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRRKLMPQKGSGRARVG 118

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--- 132
             +      GG+A     P      LP KV S+A  +ALS ++ S  + VI         
Sbjct: 119 DANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFVIGGEKVDLIS 178

Query: 133 -------------ECKTKYLVTRFRALDLSNAL-----------IIDGCQLDRNFQLAAR 168
                           T      F    +               +    +       ++ 
Sbjct: 179 PTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFLEEFQLKGKRLLFITDKTREGLIKSSD 238

Query: 169 NIP-NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
                ++++  + + V DILR   + +   A+E L
Sbjct: 239 PYKQKVDVIQKELVEVNDILRAQAVFIELEALEYL 273


>gi|6323616|ref|NP_013687.1| Yml6p [Saccharomyces cerevisiae S288c]
 gi|1710566|sp|P51998|RL4P_YEAST RecName: Full=54S ribosomal protein YmL6, mitochondrial; Flags:
           Precursor
 gi|575694|emb|CAA86630.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|151946136|gb|EDN64367.1| conserved protein [Saccharomyces cerevisiae YJM789]
 gi|285813978|tpg|DAA09873.1| TPA: Yml6p [Saccharomyces cerevisiae S288c]
          Length = 286

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 29/215 (13%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + V     A   ++ IL R + +++  +R+G S   GRSE  ++  K+  QKG+GRAR  
Sbjct: 58  VPVPTSTVAAPLRRDILWRAVVYENDNRRVGASNPPGRSENGFSRRKLMPQKGSGRARVG 117

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSK--- 132
             +      GG+A     P      LP KV S+A  +ALS ++ S  + VI         
Sbjct: 118 DANSPTRHNGGRALARTAPNDYTTELPSKVYSMAFNNALSHQYKSGKLFVIGGEKVDLIS 177

Query: 133 -------------ECKTKYLVTRFRALDLSNAL-----------IIDGCQLDRNFQLAAR 168
                           T      F    +               +    +       ++ 
Sbjct: 178 PTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFLEEFQLKGKRLLFITDKTREGLIKSSD 237

Query: 169 NIP-NINLLPVQGINVYDILRCSKLVLSKSAIEAL 202
                ++++  + + V DILR   + +   A+E L
Sbjct: 238 PYKQKVDVIQKELVEVNDILRAQAVFIELEALEYL 272


>gi|126136939|ref|XP_001384993.1| hypothetical protein PICST_32454 [Scheffersomyces stipitis CBS
           6054]
 gi|126092215|gb|ABN66964.1| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 245

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 16/205 (7%)

Query: 17  ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHS 76
           + +         ++  L   + +++ + R+G      + +  ++  K+  QKG+G+AR  
Sbjct: 39  VPLPASFMDAPTRRDFLWSAVVYEADKARVGSGYVPTKGDKLFSNKKLRPQKGSGKARVG 98

Query: 77  SKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-DNLVSKEC 134
             +      G KA G   P      L  KV   A + A S+++ +  + VI  + V+ E 
Sbjct: 99  DANSPTRDNGIKAHGIKAPHDWSTGLNSKVYHKAFQAAFSEQYKNGKVFVIGGDQVASEY 158

Query: 135 KTKYLVTRFRAL------------DLSNALIIDGCQLDRNFQLAARNI-PNINLLPVQGI 181
            T  L  ++                  N L I   Q D     +   I    ++L  + +
Sbjct: 159 DTTELDFKYEHPEATRQFVQSHNLQKLNLLFITDAQRDNLIN-STEYIGKRASVLVKEAV 217

Query: 182 NVYDILRCSKLVLSKSAIEALEDRF 206
            V D+L+ +++ +   A++    R+
Sbjct: 218 EVRDLLKANRIYIELPALQWFIGRY 242


>gi|57641476|ref|YP_183954.1| 50S ribosomal protein L4P [Thermococcus kodakarensis KOD1]
 gi|73917535|sp|Q5JDI0|RL4_PYRKO RecName: Full=50S ribosomal protein L4P
 gi|57159800|dbj|BAD85730.1| LSU ribosomal protein L4P [Thermococcus kodakarensis KOD1]
          Length = 255

 Score = 82.4 bits (202), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 83/255 (32%), Gaps = 51/255 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           +++ V NL+GE    I +   +F+   +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFNLEGEPVEEIELP-KVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  M   +    +   +  V    GG +   P     +   + KK R LA+  A++
Sbjct: 60  NIGKGHGMARVERIKTSPRFAAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIA 119

Query: 116 DKFCSN---------------DIMVID--NLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                +                ++V D    V K  +T+ +  +    D       +   
Sbjct: 120 ATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKI 179

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
                                   +      ARN P ++++ V  + V  +       +L
Sbjct: 180 RAGKGKMRGRRYKKAKGPLIVVAKNEGIVQGARNHPGVDVVTVDNLGVEYLAPGTHPGRL 239

Query: 193 -VLSKSAIEALEDRF 206
            + +K AIE L + +
Sbjct: 240 TIWTKGAIERLREIY 254


>gi|15668349|ref|NP_247145.1| 50S ribosomal protein L4P [Methanocaldococcus jannaschii DSM 2661]
 gi|1710567|sp|P54015|RL4_METJA RecName: Full=50S ribosomal protein L4P
 gi|1498950|gb|AAB98162.1| LSU ribosomal protein L4P (rplD) [Methanocaldococcus jannaschii DSM
           2661]
          Length = 252

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 93/256 (36%), Gaps = 56/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++  V NL+GE    I +   +F  + +  ++ R        +         +  +  ++
Sbjct: 1   MKAVVYNLNGEAVKEIDLP-AVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
               G      +     +  +  V Q  GG +A  P    I    + KK R  A++ A++
Sbjct: 60  NIGKGHG--RARVDRVPQGWAARVPQAVGGRRAHPPKVEKILWERVNKKERIKAIKSAIA 117

Query: 116 DKFCSNDI-------------MVIDNLVSKECKTKYLVTRF------------------- 143
                  +             +++++   +  KTK +   F                   
Sbjct: 118 ATANPELVKERGHVFETENLPIIVESSFEELQKTKDVFAVFEKLGISDDVIRAKNGIKIR 177

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191
                    +     + L++ G + +    LA+RN+P ++++  + + +  +       +
Sbjct: 178 AGKGKMRGRKYKKPRSILVVVGDKCN--AILASRNLPGVDVITAKDLGIIHLAPGGVAGR 235

Query: 192 L-VLSKSAIEALEDRF 206
           L V ++SA+E L++RF
Sbjct: 236 LTVWTESALEKLKERF 251


>gi|148693201|gb|EDL25148.1| mitochondrial ribosomal protein L4, isoform CRA_b [Mus musculus]
          Length = 194

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  I+ +V  WQ   +RI  + +K R+EV+  G K + QK
Sbjct: 67  FEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQK 126

Query: 69  GTGRARHSSKSVSQFRGGG 87
           G+GRARH S     +RGG 
Sbjct: 127 GSGRARHGSIRSPLWRGGE 145


>gi|148642821|ref|YP_001273334.1| 50S ribosomal protein L4P [Methanobrevibacter smithii ATCC 35061]
 gi|222445052|ref|ZP_03607567.1| hypothetical protein METSMIALI_00669 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350379|ref|ZP_05975796.1| 50S ribosomal protein L4P [Methanobrevibacter smithii DSM 2374]
 gi|226730693|sp|A5UL88|RL4_METS3 RecName: Full=50S ribosomal protein L4P
 gi|148551838|gb|ABQ86966.1| ribosomal protein L1e [Methanobrevibacter smithii ATCC 35061]
 gi|222434617|gb|EEE41782.1| hypothetical protein METSMIALI_00669 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861162|gb|EFC93460.1| 50S ribosomal protein L4P [Methanobrevibacter smithii DSM 2374]
          Length = 254

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 58/259 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC---------SKSK 52
           ++ +V +++GE K  I +   IF  + +  ++ R +      +             + +K
Sbjct: 1   MKANVYSMEGEVKEEIELP-AIFNEEYRPDLIKRAVISAQTARVQPWGNDPEAGKRTSAK 59

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRH 112
           G      T     ++ G+  A        +                  +  K R  A+R 
Sbjct: 60  GWGSGRGTARVPRIKNGSKAAFVPMAVGGRRAHP----TRAEKNHHEKINIKERRFAIRS 115

Query: 113 ALSDKFCSN----------------DIMVIDNLVSKECK-TKYLVTRFRALDLSNALI-- 153
           A++                       I+  D    K  K T+ +       D        
Sbjct: 116 AVAATANKELVENRGHRLGDLEQVPIIVEDDICSVKTTKQTREIFQNLGVYDDITRAKEG 175

Query: 154 ---------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RC 189
                                +     D   +L ARN   ++++ V+ +N   +      
Sbjct: 176 KRIRAGRGKTRGRKYKKVKGPLLVVGEDNGIKLGARNHAGVDVVTVENLNAELLAPGTHP 235

Query: 190 SKL-VLSKSAIEALEDRFK 207
            +L + +KSA+E L   F+
Sbjct: 236 GRLTIFTKSAVEKLGGLFQ 254


>gi|147919333|ref|YP_686931.1| 50S ribosomal protein L4P [uncultured methanogenic archaeon RC-I]
 gi|110622327|emb|CAJ37605.1| 50S ribosomal protein L4P [uncultured methanogenic archaeon RC-I]
          Length = 253

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 90/252 (35%), Gaps = 52/252 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
           +E+++ +  G+    I+V   +F  + +  I+ + +      +       +    ++ + 
Sbjct: 1   MEVTILSKSGKKSA-ITVP-AVFNEEYRPDIIKKAVLAAQANRLQPYGPDRTAGTLS-SA 57

Query: 62  SKMYVQKGTGRARHSSKS-------VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113
            K     G G A+    +       V   RGG  + GP P  I    +  K R  A+R A
Sbjct: 58  KKHSWGSGRGAAQVPRLANGSRAAVVPHARGGRASHGPNPLRIYTEKINDKERIKAIRSA 117

Query: 114 LS------------DKFCSNDIMVIDNLVSKECKTKYLVTRF------------------ 143
           ++             K+     +V+D+ +    KT  ++                     
Sbjct: 118 VAATTNPELVKARGYKYEGALPVVVDSEIESLKKTSEVMELLTALGFAADLARSKQKTVR 177

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
                           ++     D   +LAARNIP +++  +  +NV  +    +  +L 
Sbjct: 178 AGKGKMRGRQYKKKVGLLIVIAEDNGIKLAARNIPGVDVATLDELNVEMLAPGTQAGRLT 237

Query: 193 VLSKSAIEALED 204
           + ++ A++ L +
Sbjct: 238 LWTEGAMKLLTE 249


>gi|156062570|ref|XP_001597207.1| 60S ribosomal protein L4 [Sclerotinia sclerotiorum 1980]
 gi|154696737|gb|EDN96475.1| 60S ribosomal protein L4 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 373

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 76/266 (28%), Gaps = 62/266 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +SV + DG   G       +F    +  I+  V    +  KR        +  +  +E
Sbjct: 5   PTVSVLSADGTATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLGQKRFATV 124

Query: 112 ----------------HALSDKFCSNDIM------------------------------- 124
                           H +S+      ++                               
Sbjct: 125 SALAASGVPALLFARGHQISEVAEVPLVINSEVFEGAKIARTAAAAGLLKTVGALKDVEK 184

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           V D+   +  K K L  R         ++ DG    +    A RN+P +    V  +N+ 
Sbjct: 185 VKDSRKLRAGKGK-LRGRRHRQRRGPLVVYDGATDGKELVRAFRNLPGVETCDVYSLNLL 243

Query: 185 DILRCSKL----VLSKSAIEALEDRF 206
            +     L    + S SA +AL++ +
Sbjct: 244 QLAPGGHLGRFIIWSSSAFKALDNIY 269


>gi|1350686|sp|P49165|RL4_URECA RecName: Full=60S ribosomal protein L4; AltName: Full=L1
 gi|929961|gb|AAA74021.1| ribosomal protein [Urechis caupo]
          Length = 386

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 77/258 (29%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           ++V +  G      +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 7   ITVHSDKGAASESNVTLP-AVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL-- 110
             TG    ++   +G G  R    +      G + F P          +    R  AL  
Sbjct: 66  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVS 125

Query: 111 --------RHALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S   C   I    +V+ + V    KTK  V   R L     +      
Sbjct: 126 AIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNS 185

Query: 159 --------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A RNIP I L+ V  +N+  +     +
Sbjct: 186 RRFRAGKGKLRNRRAIQRRGPLIIYGTDNGISRAFRNIPGITLVNVNRLNLLSMAPGGHV 245

Query: 193 ----VLSKSAIEALEDRF 206
               + ++SA + L++ +
Sbjct: 246 GRFCIWTESAFKQLDNIY 263


>gi|320163444|gb|EFW40343.1| ribosomal protein L4 [Capsaspora owczarzaki ATCC 30864]
          Length = 397

 Score = 81.7 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 73/259 (28%), Gaps = 57/259 (22%)

Query: 4   LSVRN--LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           + V +          +++   +F    +  ++  V    +   R        +  +  + 
Sbjct: 7   VQVFSHEAANTKVASVALP-AVFKAPIRPDVVTSVHTSMNKNHRQAYAVSEYAGHQTSAI 65

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    R  A  
Sbjct: 66  SWGTGRAVARIPRVSGGGTHRAGQGAYGNMCRGGRMFAPTKTWRKWHRKINVNQRRFATC 125

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                        +     + I    +V+ N V    KTK  V   +             
Sbjct: 126 SALAASAIPSLVFARGHKIDGINEVPLVVANGVEALNKTKAAVAFLKLVGAYADVEKVKE 185

Query: 145 -------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                           +     +   + D     A RNIP + L+ V  +N+  +     
Sbjct: 186 SRKVRTGQGKMRNRRHVQRLGPMIVYRNDNGITRAFRNIPGVELIQVDRLNLLKLAPGGH 245

Query: 192 ----LVLSKSAIEALEDRF 206
               L+ +++A E L+  +
Sbjct: 246 LGRFLIWTQAAFERLDALY 264


>gi|70909605|emb|CAJ17228.1| ribosomal protein L4e [Eucinetus sp. APV-2005]
          Length = 432

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 86/259 (33%), Gaps = 57/259 (22%)

Query: 4   LSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57
           + V +   E   G +     +F    +  ++  V +  S+  R   S SK       +E 
Sbjct: 10  IGVYSEKSEQVKGKVIPLPVVFKAPIRPDVVNFVHQQVSFNHRQPYSVSKEAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  A+  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWYRRVNVNQRRYAVAS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS--------- 149
           A+          S     ++I    +V+ + + +  KTK  V   R +            
Sbjct: 130 AVAASGIPALVQSKGHIIDNIPELPLVVSDKIQELTKTKQAVIFLRRIKAWADIEKVYKS 189

Query: 150 ------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                +I   + D+  + A RNIP I L+ V  +N+  +     
Sbjct: 190 QRFRAGKGKMRNRRRIQRRGPLIVYHE-DQGLRRAFRNIPGIELIHVDRLNLLKLAPGGH 248

Query: 192 L----VLSKSAIEALEDRF 206
           +    + ++SA E L+  F
Sbjct: 249 VGRFIIWTQSAFEKLDKIF 267


>gi|317148273|ref|XP_001822664.2| 60S ribosomal protein L4-B [Aspergillus oryzae RIB40]
          Length = 407

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   +G+  G  +    +F    +  ++ +V    +  KR   + S     +  +E
Sbjct: 40  PTVTIATAEGKPSGATAPLPAVFNAPIRLDVVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 99

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          L    +  A  
Sbjct: 100 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKLNLNQKRFATA 159

Query: 112 HALSDKFCSNDIM--------------VIDNLVSKEC---KTKYLVTRFR---------- 144
            AL+       +               V+++   +     KTK  VT  +          
Sbjct: 160 SALAASSVPALLFARGHRVANVPEVPLVVESKTFENAALTKTKAAVTLLKALGAGDDLVK 219

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++   ++D +    A RNIP +   PV  +N+  
Sbjct: 220 VAKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSPVFALNLLQ 279

Query: 186 ILRCSK----LVLSKSAIEALEDRF 206
           +         +V + SA EAL+  F
Sbjct: 280 LAPGGHLGRFVVWTSSAFEALDQVF 304


>gi|41614941|ref|NP_963439.1| 50S ribosomal protein L4P [Nanoarchaeum equitans Kin4-M]
 gi|46396577|sp|P60847|RL4_NANEQ RecName: Full=50S ribosomal protein L4P
 gi|40068665|gb|AAR39000.1| NEQ146 [Nanoarchaeum equitans Kin4-M]
          Length = 268

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 81/265 (30%), Gaps = 62/265 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSK----SKGRSEV 57
           +E+ + NL     G I +    F  K +  ++ R        KR          K  S  
Sbjct: 1   MEVPLYNLQASQVGNIELPPQ-FNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAW 59

Query: 58  AYTGSKMYVQK------GTGRARHSSKSV---------SQFRGGGKAFGPVP-IIGVHAL 101
                + +            RA                +Q   G KA  P         +
Sbjct: 60  TSKRRRSWRTSYGRGISRVSRAILRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKI 119

Query: 102 PKKVRSLALRHALS-------DKFC----SNDIMVIDNLVSKECKTKYLVTRF------- 143
            KK R LA+R AL+        K         + ++ + + +  KTK +           
Sbjct: 120 NKKERRLAIRSALAATKELDLVKARGHIIDKPVPIVVDGLEQLRKTKEIQQLLLKLGLEK 179

Query: 144 -------------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                              RA       +I     +     A  NIP +++  V  +NV 
Sbjct: 180 ELERVYEIKRRAGKGKRRGRAYIERKGPLIVVNDYNEQLFKAVDNIPGLDIEEVPNLNVE 239

Query: 185 DILRCSK----LVLSKSAIEALEDR 205
            +   +K    L++SK A+E L +R
Sbjct: 240 LLAPGAKPGRLLIISKDALETLRER 264


>gi|71030984|ref|XP_765134.1| 60S ribosomal protein L4/L1 [Theileria parva strain Muguga]
 gi|68352090|gb|EAN32851.1| 60S ribosomal protein L4/L1, putative [Theileria parva]
          Length = 389

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 48/237 (20%)

Query: 18  SVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGSKMYVQK---G 69
           +V   +F+   +  ++  V    S  KR   + S+       +    TG  +       G
Sbjct: 21  TVMPRVFSTPLRSDLVRYVHTNMSKNKRQAYAVSRLSGYQTSARSWGTGRALSRTPRVKG 80

Query: 70  TGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDK 117
            G  R    + + F   G  F P          L  K R LAL             +S  
Sbjct: 81  GGTHRSGQAAYANFCRAGGMFAPTKTWRRWHRKLNLKERRLALASAVSATAVVPLVMSRG 140

Query: 118 FCSNDI----MVIDNLVSKECKTKYLVTRFRAL--------------------DLSNALI 153
                +    +V+D+ V    KT+  V    ++                          +
Sbjct: 141 HRVESVPELPLVLDDTVENLTKTRDAVELLNSMGLGDELKRVNTVKRTKRKGRKYPVGPL 200

Query: 154 IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
           +         + A RNIP ++++ V+ +N+  +         ++ S+SA E L+   
Sbjct: 201 VVLRSSAVEGKRAFRNIPGVDVVSVEHLNLLKLAPAGTLGRLVLYSRSAFELLDTVL 257


>gi|14520557|ref|NP_126032.1| 50S ribosomal protein L4P [Pyrococcus abyssi GE5]
 gi|13124461|sp|Q9V1T6|RL4_PYRAB RecName: Full=50S ribosomal protein L4P
 gi|5457773|emb|CAB49263.1| rpl4P LSU ribosomal protein L4P [Pyrococcus abyssi GE5]
          Length = 255

 Score = 81.7 bits (200), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 85/255 (33%), Gaps = 51/255 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           +++ V +L+G+    I +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFDLNGQPVDEIELP-KVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115
               G  M   +        +  V   RGG +   P     +   + KK R LA+  A++
Sbjct: 60  NIGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIA 119

Query: 116 DKFCSN---------------DIMVID--NLVSKECKTKYLVTRFRALDLSNALI----- 153
                +                ++V+D    VSK  +T+ +  +    D           
Sbjct: 120 ATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDDIERAKEKTGI 179

Query: 154 ------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
                             +     +      ARN P ++++ V  + V  +       +L
Sbjct: 180 RAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRL 239

Query: 193 -VLSKSAIEALEDRF 206
            V + SAIE L++ +
Sbjct: 240 TVWTVSAIERLKEIY 254


>gi|146417697|ref|XP_001484816.1| hypothetical protein PGUG_02545 [Meyerozyma guilliermondii ATCC
           6260]
 gi|146390289|gb|EDK38447.1| hypothetical protein PGUG_02545 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 362

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            ++SV +  GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVSVISTKGEQTSTQVALPSVFSAPVRPDIVHSVFVKVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA-- 109
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNIKVNHNEKRYATA 123

Query: 110 -------------LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
                         R    ++     ++V D   S   KTK  V   +A+     ++   
Sbjct: 124 SAIAASAVTSLVLARGHRVEQVKELPLVVADEFESVT-KTKEAVAVLKAVGAHKDVVKVL 182

Query: 157 CQ--------------------------LDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                        D     A RNIP +    V+ + +  +    
Sbjct: 183 KSKKLRAGKGKLRGRRFTQRRGPLVVYAKDNGLTKALRNIPGVETSDVKHLGLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ ++SAIE+L+  +
Sbjct: 243 HLGRFVIWTQSAIESLDSIY 262


>gi|169864162|ref|XP_001838693.1| Ras2 [Coprinopsis cinerea okayama7#130]
 gi|116500215|gb|EAU83110.1| Ras2 [Coprinopsis cinerea okayama7#130]
          Length = 371

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 85/259 (32%), Gaps = 55/259 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++VR++ GE    + +   +     +  ++ +V +  +  KR        +  +  +E
Sbjct: 5   PTVNVRSVSGEASSSLPLP-AVLTAPIRLDVVQQVHKSIAKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          + +  R  A+ 
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRFAVV 123

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL+            + I       +V+ + V    KTK  V   +AL     ++    
Sbjct: 124 SALAASALPSLVLARGHRIEQIEEVPLVVSSEVEAFTKTKQAVALLQALKAHADVVKVSN 183

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A RN+P + L+ V+ +N+  +     
Sbjct: 184 SRKIRAGKGKLRNRRHRQRRGPLVVYNEDNGIVKAFRNLPGVELVNVRRLNLLQLAPGGH 243

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ ++ A   L+D +
Sbjct: 244 LGRFVIWTQGAFALLDDVY 262


>gi|291413252|ref|XP_002722892.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
           [Oryctolagus cuniculus]
          Length = 162

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 44/75 (58%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTG 71
           E  G+  +  D+FA  P+  +L +V  WQ   KRI  +K+K R+EV   G K + QKG+G
Sbjct: 75  ERVGLAELHPDVFATAPRLDVLHQVAVWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSG 134

Query: 72  RARHSSKSVSQFRGG 86
           RARH S     +RGG
Sbjct: 135 RARHGSIRSPIWRGG 149


>gi|195574444|ref|XP_002105199.1| GD21356 [Drosophila simulans]
 gi|194201126|gb|EDX14702.1| GD21356 [Drosophila simulans]
          Length = 401

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 10  VSVYTEKNEPAKGKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
           A+          S     + +    +V+ + V K  KTK  V   R L +   +      
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189

Query: 158 -------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                      D   + A RNIP I  + V  +N+  +      
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRQAFRNIPGIETINVDKLNLLKLAPGGHV 249

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA   L D F
Sbjct: 250 GRFVIWTESAFARLNDLF 267


>gi|1350685|sp|P49669|RL4_TRYBB RecName: Full=60S ribosomal protein L4; AltName: Full=L1
 gi|1015931|emb|CAA91141.1| ribosomal protein L1 [Trypanosoma brucei]
          Length = 374

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 81/257 (31%), Gaps = 55/257 (21%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV +  + +  G  S+   +F    +  ++  V    +   R   +       K  +E 
Sbjct: 7   VSVYSASEDKVVGTCSLP-AVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ V    KTK  +T  + +   + +      
Sbjct: 126 ALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNI  ++L  V  +N+  +     + 
Sbjct: 186 RQIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGHVG 245

Query: 193 ---VLSKSAIEALEDRF 206
              + +KSA E L+  F
Sbjct: 246 RFIIWTKSAFEKLDKIF 262


>gi|108861843|gb|ABG21823.1| ribosomal protein L4-like protein [Schistosoma mansoni]
          Length = 375

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 76/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V  ++G   G       +F    +  +L  V        R        +  +  +E  
Sbjct: 8   VNVYGVNGASTGSTIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSSKAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG  + P          +  + R  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN--------- 150
                     ++     + +    +V+   V    KTK  V   +A+             
Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187

Query: 151 -----------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               I   + D     A RNIP I L+ V+ +N+  +     + 
Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIVIYKKDDGISRAFRNIPGITLINVKALNLLKLAPGGHMG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + S SA   L+  +
Sbjct: 248 RLAIWSDSAFRQLDKLY 264


>gi|209881791|ref|XP_002142333.1| 60S ribosomal protein L4 [Cryptosporidium muris RN66]
 gi|209557939|gb|EEA07984.1| 60S ribosomal protein L4, putative [Cryptosporidium muris RN66]
          Length = 389

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 79/259 (30%), Gaps = 61/259 (23%)

Query: 4   LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +S+ ++    +   S+    +F    +  ++  V    S  KR        +  +  +E 
Sbjct: 8   VSIYSIKDSSRATSSMPLPTVFISPLRPDLVRYVFTNMSKNKRQAYGVSTNAGHQHSAES 67

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++     +G +R    +      GG  F P               +  A+  
Sbjct: 68  WGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFNPNKTYRRFHRKTNTNEKRHAVAS 127

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      ++     N++    +V+ + V    KT   V  F        +      
Sbjct: 128 ALAATGCPALVMARGHRINELPELPLVVSDDVESVTKTSSAVEFFNRFGFEEEMKRVDSS 187

Query: 159 --------------------------LDRNFQLAARNIPNINLLPVQGINVYDILR---- 188
                                     +D+    A RNIP +    V+ +N   +L+    
Sbjct: 188 IAIRCGKGKMRNRRRVCARGPLVIYAVDKGITRAMRNIPGVETCNVESLN---LLKLAPG 244

Query: 189 --CSKL-VLSKSAIEALED 204
               +L + + SA++ L++
Sbjct: 245 GTFGRLTIFTVSAMKKLQE 263


>gi|72387341|ref|XP_844095.1| 60S ribosomal protein L4 [Trypanosoma brucei]
 gi|62360254|gb|AAX80672.1| 60S ribosomal protein L4 [Trypanosoma brucei]
 gi|70800627|gb|AAZ10536.1| 60S ribosomal protein L4 [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
          Length = 374

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 81/257 (31%), Gaps = 55/257 (21%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV +  + +  G  S+   +F    +  ++  V    +   R   +       K  +E 
Sbjct: 7   VSVYSASEDKVVGTCSLP-AVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ V    KTK  +T  + +   + +      
Sbjct: 126 ALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNI  ++L  V  +N+  +     + 
Sbjct: 186 RQIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGHVG 245

Query: 193 ---VLSKSAIEALEDRF 206
              + +KSA E L+  F
Sbjct: 246 RFIIWTKSAFEKLDKIF 262


>gi|307181855|gb|EFN69295.1| 60S ribosomal protein L4 [Camponotus floridanus]
          Length = 551

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 80/250 (32%), Gaps = 54/250 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V     E  G +     +F    +  I+  V +  S   R        +  +  +E  
Sbjct: 10  ITVYTDKNEASGDVISLPSVFKAPIRPDIVNVVHQLISTNSRQPYCVSKEAGHQTSAESW 69

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P        H +    +  AL  A
Sbjct: 70  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHHRVNVNQKRYALVSA 129

Query: 114 L----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
           +          S      ++    +V+ + + +  KTK  V   R +   N +       
Sbjct: 130 IAASGVPALVQSKGHLIEEVPEFPLVVSDKIQEYTKTKQAVIFLRRIKAWNDIQKVYKSQ 189

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D+  + A RNIP I+L+ +  +N+  +       
Sbjct: 190 RFRAGKGKMRNRRRIHRRGPLIVYNQDQGIRKAFRNIPGISLMNINKMNLLKLAPGGHVG 249

Query: 192 --LVLSKSAI 199
             ++ +KSA 
Sbjct: 250 RFVIWTKSAF 259


>gi|261403780|ref|YP_003248004.1| 50S ribosomal protein L4P [Methanocaldococcus vulcanius M7]
 gi|261370773|gb|ACX73522.1| 50S ribosomal protein L4P [Methanocaldococcus vulcanius M7]
          Length = 252

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 88/255 (34%), Gaps = 54/255 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++  V NL+GE+   I +   IF  + +  ++ R        +         +  +  ++
Sbjct: 1   MKAVVYNLNGEEIKEIDLP-SIFEEEYRPDLIKRAFLSAFTARLQPKGSDVLAGLRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
               G      +     +  +  V Q  GG +A  P         + KK R  A++ A++
Sbjct: 60  NIGKGHG--RARVDRVPQGWAARVPQAVGGRRAHPPKVEKKLWERVNKKERIKAIKSAIA 117

Query: 116 DKFCSNDI-------------MVIDNLVSKECKTKYLVTRF------------------- 143
                  +             +V+++      KTK +   F                   
Sbjct: 118 ATANPELVKERGHVFESENLPIVVEDSFENLQKTKDVFAVFEKLGIDKDVIRAKNGIKIR 177

Query: 144 --------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
                   R      ++++          LA+RN+P ++++  + + +  +       +L
Sbjct: 178 AGKGKMRGRRYRKPRSVLVVVGDKCEAI-LASRNLPGVDVITAKDLGIIHLAPGGVAGRL 236

Query: 193 -VLSKSAIEALEDRF 206
            V ++ A+E L++RF
Sbjct: 237 TVWTEKALEKLKERF 251


>gi|255715761|ref|XP_002554162.1| KLTH0E15686p [Lachancea thermotolerans]
 gi|238935544|emb|CAR23725.1| KLTH0E15686p [Lachancea thermotolerans]
          Length = 363

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 54/259 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            ++SV  L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVSVHGLTGETSSSSVALPAVFSAPIRPDIVHSVFTSVNKNKRQAYAVSDKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 HALSDKFCSNDIMVIDNLVSKEC--------------KTKYLVTRFRALDLSNALIIDGC 157
            A++    ++ ++   + V K                KTK  V   +A+   + ++    
Sbjct: 124 SAIAASAVASLVLARGHRVEKIPEIPLVVSNDLESVKKTKEAVAALKAVGAHSDVVKVLK 183

Query: 158 QL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR--- 188
                                       D     A RN+P +    V  +++  +     
Sbjct: 184 SKKMRAGKGKYRNRRFTQRRGPLVVYAEDNGIVKAFRNLPGVETANVASLSLLQLAPGAH 243

Query: 189 -CSKLVLSKSAIEALEDRF 206
               ++ ++SA   L+  +
Sbjct: 244 MGRFVIWTESAFAKLDQVW 262


>gi|170095954|ref|XP_001879197.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645565|gb|EDR09812.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 364

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 83/258 (32%), Gaps = 55/258 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++VR+  GE    + +   +     +  ++ +V +  +  KR        +  +  +E
Sbjct: 5   PTVNVRSSTGEASTSLPLP-AVLTAPIRLDVVQQVHKSIAKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          + +  R  A+ 
Sbjct: 64  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNQNQRRFAVV 123

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            AL+            + I       +V+ +      KTK  V   +AL   + ++    
Sbjct: 124 SALAASALPSLVLARGHRIEQIEEVPLVVASATESFTKTKEAVALLKALHAYSDVVKVSN 183

Query: 158 --------------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A RN+P + L+ V+ +N+  +     
Sbjct: 184 SRKLRAGKGKLRNRRHRQRRGPLVVYNEDNGIVKAFRNLPGVELVNVRRLNLLQLAPGGH 243

Query: 192 ----LVLSKSAIEALEDR 205
               ++ ++ A   L++ 
Sbjct: 244 LGRFVIWTEGAFALLDEV 261


>gi|256081834|ref|XP_002577172.1| 60S ribosomal protein L4 [Schistosoma mansoni]
 gi|238662469|emb|CAZ33409.1| 60S ribosomal protein L4, putative [Schistosoma mansoni]
          Length = 385

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 76/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V  ++G   G       +F    +  +L  V        R        +  +  +E  
Sbjct: 18  VNVYGVNGASTGSTIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSSKAGHQTSAESW 77

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG  + P          +  + R  A+   
Sbjct: 78  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 137

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN--------- 150
                     ++     + +    +V+   V    KTK  V   +A+             
Sbjct: 138 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 197

Query: 151 -----------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               I   + D     A RNIP I L+ V+ +N+  +     + 
Sbjct: 198 RFRAGKGKMRNRRRIQKRGPIVIYKKDDGISRAFRNIPGITLINVKALNLLKLAPGGHMG 257

Query: 193 ---VLSKSAIEALEDRF 206
              + S SA   L+  +
Sbjct: 258 RLAIWSDSAFRQLDKLY 274


>gi|238503079|ref|XP_002382773.1| 60S ribosomal protein L4, putative [Aspergillus flavus NRRL3357]
 gi|83771399|dbj|BAE61531.1| unnamed protein product [Aspergillus oryzae]
 gi|220691583|gb|EED47931.1| 60S ribosomal protein L4, putative [Aspergillus flavus NRRL3357]
          Length = 372

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   +G+  G  +    +F    +  ++ +V    +  KR   + S     +  +E
Sbjct: 5   PTVTIATAEGKPSGATAPLPAVFNAPIRLDVVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          L    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKLNLNQKRFATA 124

Query: 112 HALSDKFCSNDIM--------------VIDNLVSKEC---KTKYLVTRFR---------- 144
            AL+       +               V+++   +     KTK  VT  +          
Sbjct: 125 SALAASSVPALLFARGHRVANVPEVPLVVESKTFENAALTKTKAAVTLLKALGAGDDLVK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++   ++D +    A RNIP +   PV  +N+  
Sbjct: 185 VAKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSPVFALNLLQ 244

Query: 186 ILRCSK----LVLSKSAIEALEDRF 206
           +         +V + SA EAL+  F
Sbjct: 245 LAPGGHLGRFVVWTSSAFEALDQVF 269


>gi|194387084|dbj|BAG59908.1| unnamed protein product [Homo sapiens]
          Length = 414

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 74/266 (27%), Gaps = 64/266 (24%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 113 ALSDKFCSNDIMVIDNLVSKEC-------KTKYLVTRFRALDLSNALI------------ 153
           AL+       +M   + + +         K K      +                     
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKLKAWN 186

Query: 154 -----------------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                                              D     A RNIP I LL V  +N+ 
Sbjct: 187 DIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNIL 246

Query: 185 DILRCSKL----VLSKSAIEALEDRF 206
            +     +    + ++SA   L++ +
Sbjct: 247 KLAPGGHVGRFCIWTESAFRKLDELY 272


>gi|16082269|ref|NP_394727.1| 50S ribosomal protein L4P [Thermoplasma acidophilum DSM 1728]
 gi|46396656|sp|Q9HIR0|RL4_THEAC RecName: Full=50S ribosomal protein L4P
 gi|10640616|emb|CAC12394.1| probable 50S ribosomal protein L4 [Thermoplasma acidophilum]
          Length = 255

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 78/251 (31%), Gaps = 49/251 (19%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVA--YT 60
           ++ + ++ GE KG I + E +F  + ++ I+ R  R  S   R     S         +T
Sbjct: 4   KVPIYSVSGEMKGEIDLPE-VFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHT 62

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG---VHALPKKVRSLALRHALSDK 117
                      R    S+ V      G      P         +  + R +A   A++  
Sbjct: 63  TRPGLGISRMPRIAGGSRVVGIASAVGGKSAHSPRTTKNLYVKINDRERKMAKYSAIALT 122

Query: 118 FCSNDI--------------MVIDNLVSKECKTKYLVTRFRA------------------ 145
                +              +V+++ V    KTK  +   +                   
Sbjct: 123 ASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRA 182

Query: 146 -------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSKLVL 194
                          +     + +   A R++P +++     +++  +    +     + 
Sbjct: 183 GRGKMRGRRYKQPKSVLIVARNSSAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIF 242

Query: 195 SKSAIEALEDR 205
           ++ AIE+L++ 
Sbjct: 243 TEGAIESLKEV 253


>gi|261334563|emb|CBH17557.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 459

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 60/260 (23%)

Query: 2   IE----LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSK 52
           ++      V NL  E      +   IF       +  + +   ++R Q++  +       
Sbjct: 109 MKERIIAPVFNLKNEVIYTRELDPFIFGMYPEVEELSKNLTYWMVRCQNFASKWDY---- 164

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
              E+     K +   G G  R  ++    +  GG+     P  + +  +  K  S + R
Sbjct: 165 ETREIWRKAKKNWPNTGMGMPRVGNRKNHLYTWGGRTKPSKPWNMLMPTMDVKTWSKSNR 224

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--------------C 157
             L+ K     + V+D L  +E  T+            +     G               
Sbjct: 225 MMLTLKMLQGRLQVVDRLTLEEP-TQECYLELCRNMSWDVRHTGGGVLFMDGGSRITPSS 283

Query: 158 QLDRNFQLAA----RN---IPNI------------------------NLLPVQGINVYDI 186
           + DR F   +    RN    P +                        N +P+   N YD 
Sbjct: 284 EFDRAFFFGSFFNGRNKIVRPTVLCDEQYDYNKTAAKQRMKGPKGAKNPIPINRFNAYDA 343

Query: 187 LRCSKLVLSKSAIEALEDRF 206
           ++  +LV+++ A+  LED  
Sbjct: 344 MKHDRLVITEGALMQLEDEL 363


>gi|332158023|ref|YP_004423302.1| 50S ribosomal protein L4P [Pyrococcus sp. NA2]
 gi|331033486|gb|AEC51298.1| 50S ribosomal protein L4P [Pyrococcus sp. NA2]
          Length = 255

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 87/256 (33%), Gaps = 53/256 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           +++ V +L+G+    I +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFDLNGQPVDEIELP-KVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  M   +        +  V   RGG +   P     +   + KK + LAL  A++
Sbjct: 60  NIGKGHGMARVERLKTPPRYAAFVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIA 119

Query: 116 DKFCSN---------------DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL- 159
                +                ++V+D L  K  KT+     F+ L + + ++    +  
Sbjct: 120 ATANYDIVRARGHIIDNVPQLPLIVVDELQ-KISKTRETREIFKKLGIWDDIMRAKEKSG 178

Query: 160 -------------------------DRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191
                                    +      ARN P ++++ V  + V  +       +
Sbjct: 179 IRAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGR 238

Query: 192 L-VLSKSAIEALEDRF 206
           L V + SAIE L + +
Sbjct: 239 LTVWTVSAIERLREIY 254


>gi|50303803|ref|XP_451848.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640980|emb|CAH02241.1| KLLA0B07139p [Kluyveromyces lactis]
          Length = 363

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 58/258 (22%)

Query: 1   MIELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           + +++V +L+GE      +    +F    +  I+  V    +  KR        +  +  
Sbjct: 3   IPQVAVLSLNGETTST-DLPLPAVFRAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTS 61

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          + +  +  A
Sbjct: 62  AESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNQNEKRYA 121

Query: 110 ---------------LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALII 154
                           R    +K  S  ++V D+L S   KTK  V   +A+   + +I 
Sbjct: 122 TASAIAASAVPSLVLARGHRVEKVPSIPLVVSDDLQS-IQKTKEAVAALKAVGAHSDVIK 180

Query: 155 DGCQL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR 188
                                          D     A RN+P +    V  + +  +  
Sbjct: 181 VVKSKKLRAGKGKYRNRRFTQRRGPLVVYSEDNGVVKAFRNVPGVETANVASLGLLQLAP 240

Query: 189 ----CSKLVLSKSAIEAL 202
                  ++ ++SA   L
Sbjct: 241 GAHLGRFVIWTQSAFSKL 258


>gi|145354643|ref|XP_001421589.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581827|gb|ABO99882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 387

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 77/254 (30%), Gaps = 57/254 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           L V ++ G +    ++ E +F    +  I+  V    +   R        +  +  +E  
Sbjct: 5   LPVVSVQGGNGATSALPE-VFLSPIRPDIVNAVHTGLNKNNRQAYAVYNRAGHQTAAESW 63

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G G  R    +      GG+ F P          +  K +  A+  A
Sbjct: 64  GTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKVWRRWHRRVNLKEKRYAVCSA 123

Query: 114 LSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA-------------- 145
           L+            + +       +V+D+  S   KT   V   +               
Sbjct: 124 LAASAVPALLLARGHRVEGVPEVPLVVDDSASSIKKTAKAVELLKQLGAYADVEKVKASR 183

Query: 146 -------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                               ++   + D     A RNIP + L  V  + +  +     +
Sbjct: 184 NIRSGKGKMRNRRYVQRRGPLVVYSE-DNGVTRAFRNIPGVELCSVDRLGLLTLAPGGHV 242

Query: 193 ----VLSKSAIEAL 202
               + +KSA + L
Sbjct: 243 GRFIIWTKSAFDKL 256


>gi|225557039|gb|EEH05326.1| 60S ribosomal protein [Ajellomyces capsulatus G186AR]
          Length = 372

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 75/262 (28%), Gaps = 62/262 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             ++V N +G+  G       +FA   +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTVANAEGKPSGATQPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRS---- 107
              TG    ++    G G  R    +       G+ F P          +    +     
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124

Query: 108 ------------LALRHALSDKFCSNDIMVID--NLVSKECKTKYLVTRFRA-------- 145
                        A  H +S+      ++V           KTK  +   +         
Sbjct: 125 SALAASSVPALLYARGHRISN-VPEVPLVVDSKAFENDSIAKTKAAIALLKNLGAGPDLV 183

Query: 146 --------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184
                                     L++    +D +    A RNIP +   PV  +N+ 
Sbjct: 184 KVEKSRKLRAGKGKMRGRRYRQRRGPLVVYNPDVDGKQLVKAFRNIPGVETCPVFALNLL 243

Query: 185 DILRCSKL----VLSKSAIEAL 202
            +     L    V + SA  AL
Sbjct: 244 QLAPGGHLGRFIVWTSSAFAAL 265


>gi|154285254|ref|XP_001543422.1| 60S ribosomal protein L4-A [Ajellomyces capsulatus NAm1]
 gi|150407063|gb|EDN02604.1| 60S ribosomal protein L4-A [Ajellomyces capsulatus NAm1]
          Length = 372

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 76/262 (29%), Gaps = 62/262 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             ++V N +G+  G       +FA   +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTVANAEGKPSGATQPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRS---- 107
              TG    ++    G G  R    +       G+ F P          +    +     
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124

Query: 108 ------------LALRHALSDKFCSNDIMVID--NLVSKECKTKYLVTRFRA-------- 145
                        A  H +S+      ++V           KTK  +T  +         
Sbjct: 125 SALAASSVPALLYARGHRISN-VPEVPLVVDSKAFENDSIAKTKAAITLLKNLGAGPDLV 183

Query: 146 --------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184
                                     L++    +D +    A RNIP +   PV  +N+ 
Sbjct: 184 KVEKSRKLRAGKGKMRGRRYRQRRGPLVVYNPDVDGKQLVKAFRNIPGVETCPVFALNLL 243

Query: 185 DILRCSKL----VLSKSAIEAL 202
            +     L    V + SA  AL
Sbjct: 244 QLAPGGHLGRFIVWTSSAFAAL 265


>gi|66817212|ref|XP_642484.1| 60S ribosomal protein L4 [Dictyostelium discoideum AX4]
 gi|74856887|sp|Q54Z69|RL4_DICDI RecName: Full=60S ribosomal protein L4
 gi|60470596|gb|EAL68575.1| 60S ribosomal protein L4 [Dictyostelium discoideum AX4]
          Length = 369

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 71/254 (27%), Gaps = 56/254 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58
           + V +   +  G + +  ++     +  ++  V    +   R        +  +  +E  
Sbjct: 7   VQVFDAQNKVVGKVKLP-NVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESW 65

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL----- 108
            TG    ++    G+G  R    +      GG+ +GP          +    +       
Sbjct: 66  GTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSA 125

Query: 109 ----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                       R    +      +++ +  V    KTK  V   + ++    +      
Sbjct: 126 LAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAYADVTKVIDS 185

Query: 159 L--------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                            A RNIP + +  V  +N+  +     L
Sbjct: 186 KHIRAGAGKARNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGHL 245

Query: 193 ----VLSKSAIEAL 202
               + +KSA E L
Sbjct: 246 GRFIIWTKSAFEQL 259


>gi|212223212|ref|YP_002306448.1| 50S ribosomal protein L4P [Thermococcus onnurineus NA1]
 gi|226731435|sp|B6YSL4|RL4_THEON RecName: Full=50S ribosomal protein L4P
 gi|212008169|gb|ACJ15551.1| LSU ribosomal protein L4P [Thermococcus onnurineus NA1]
          Length = 255

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 86/255 (33%), Gaps = 51/255 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +++ V NL+GE    I +  ++FA   +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFNLEGEPVEEIELP-NVFATPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  M   +    +   +  V   RGG +   P     +   + KK R LA+  A++
Sbjct: 60  NIGKGHGMARVERIKTSPRFAAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIA 119

Query: 116 DKFCSN----------------DIMVID-NLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                +                 ++V D   V K  +T+ +  +    D       +   
Sbjct: 120 ATANYDLVRARGHIVDNVPQVPLVVVNDLEKVFKTAQTREIFKKLGVWDDIERAKKNTKI 179

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
                                   +      ARN P ++++ V+ + V  +       +L
Sbjct: 180 RAGKGKMRGRRYKKAKGPLIVVAKNEGIVQGARNHPGVDVVTVENLGVELLAPGTHPGRL 239

Query: 193 -VLSKSAIEALEDRF 206
            + +K AIE L + +
Sbjct: 240 TIWTKGAIERLREIY 254


>gi|70985070|ref|XP_748041.1| 60S ribosomal protein L4 [Aspergillus fumigatus Af293]
 gi|66845669|gb|EAL86003.1| 60S ribosomal protein L4, putative [Aspergillus fumigatus Af293]
 gi|159126035|gb|EDP51151.1| 60S ribosomal protein L4, putative [Aspergillus fumigatus A1163]
          Length = 373

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 81/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   DG+  G       +F    +  I+ +V    +  KR   + S     +  +E
Sbjct: 5   PTVTIATADGKPSGATLPLPAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFATA 124

Query: 112 HALSDK-------FCSNDI-------MVIDNLVSK---ECKTKYLVTRFR---------- 144
            AL+            + I       +V+++   +     KTK  +   +          
Sbjct: 125 SALAASSVPSLLFARGHRIANVPEVPLVVESKTFENAAITKTKAAIALLKALGAGADLVK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++   ++D +    A RNIP +    V  +N+  
Sbjct: 185 VQKSKKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + +A EAL+  +
Sbjct: 245 LAPGGHLGRFIVWTSAAFEALDQVY 269


>gi|325093673|gb|EGC46983.1| 60S ribosomal protein [Ajellomyces capsulatus H88]
          Length = 372

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 76/262 (29%), Gaps = 62/262 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             ++V N +G+  G       +FA   +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTVANAEGKPSGATQPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRS---- 107
              TG    ++    G G  R    +       G+ F P          +    +     
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124

Query: 108 ------------LALRHALSDKFCSNDIMVID--NLVSKECKTKYLVTRFRA-------- 145
                        A  H +S+      ++V           KTK  +T  +         
Sbjct: 125 SALAASSVPALLYARGHRISN-VPEVPLVVDSKAFENDSIAKTKAAITLLKNLGAGPDLV 183

Query: 146 --------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184
                                     L++    +D +    A RNIP +   PV  +N+ 
Sbjct: 184 KVEKSRKLRAGKGKMRGRRYRQRRGPLVVYNPDVDGKQLVKAFRNIPGVETCPVFALNLL 243

Query: 185 DILRCSKL----VLSKSAIEAL 202
            +     L    V + SA  AL
Sbjct: 244 QLAPGGHLGRFIVWTSSAFAAL 265


>gi|70952565|ref|XP_745442.1| 60S ribosomal subunit protein L4/L1 [Plasmodium chabaudi chabaudi]
 gi|56525766|emb|CAH79389.1| 60S ribosomal subunit protein L4/L1, putative [Plasmodium chabaudi
           chabaudi]
          Length = 411

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 77/261 (29%), Gaps = 60/261 (22%)

Query: 1   MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS---- 51
           M  +    +V  ++G+   G + +   +F    +  ++  +    S   R   +      
Sbjct: 1   MATIRPLANVYGINGKKVVGEVEIP-VVFQTPIRHDLIEYIFSNMSKNIRHPYAVKLGAG 59

Query: 52  -KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105
            +  +E   TG    ++    G G  R    +      GG  F P          +  K 
Sbjct: 60  YETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKINLKE 119

Query: 106 RSLALRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF-------- 143
           +  A+  +++            + I       +V  N +    KTK  +           
Sbjct: 120 KRYAVCSSIAASGITSLVLARGHRISNLKEVPLVASNDIESMQKTKDALKFLISLGLRDE 179

Query: 144 ------------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                   +   +     D   + A RNIP ++L  V  +N+  
Sbjct: 180 VNRLIKSXKLRARXGKMRNRKYKISNGPLIIYSXDSGIKKAFRNIPGVDLCNVTKLNLLK 239

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     +    + S+ A + L
Sbjct: 240 LAPGGSIGRLCIWSEDAFKKL 260


>gi|15242558|ref|NP_195907.1| 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana]
 gi|20143905|sp|P49691|RL4B_ARATH RecName: Full=60S ribosomal protein L4-2; AltName: Full=L1
 gi|7413562|emb|CAB86041.1| 60S ribosomal protein-like [Arabidopsis thaliana]
 gi|15450798|gb|AAK96670.1| 60S ribosomal protein-like [Arabidopsis thaliana]
 gi|16649033|gb|AAL24368.1| 60S ribosomal protein-like [Arabidopsis thaliana]
 gi|17064752|gb|AAL32530.1| 60S ribosomal protein-like [Arabidopsis thaliana]
 gi|20260072|gb|AAM13383.1| 60S ribosomal protein-like [Arabidopsis thaliana]
 gi|21387109|gb|AAM47958.1| 60S ribosomal protein-like protein [Arabidopsis thaliana]
 gi|22530964|gb|AAM96986.1| 60S ribosomal protein-like [Arabidopsis thaliana]
 gi|25083642|gb|AAN72099.1| 60S ribosomal protein-like [Arabidopsis thaliana]
 gi|332003146|gb|AED90529.1| 60S ribosomal protein L4-2 [Arabidopsis thaliana]
          Length = 407

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           ++V+ LDG+        +++ + +     +  I+  V    S   R   + SK       
Sbjct: 11  VTVQGLDGDMSTDQSTTVTLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   ++  A
Sbjct: 70  AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 129

Query: 110 LRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRA---------- 145
           +             ++      ++    +V+ +      KT   +   +           
Sbjct: 130 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 189

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   ++           A RN+P + L  V+ +N+  +  
Sbjct: 190 KNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAP 249

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ +KSA E LE  +
Sbjct: 250 GGHLGRFVIWTKSAFEKLESIY 271


>gi|186519603|ref|NP_001119159.1| 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana]
 gi|332003147|gb|AED90530.1| 60S ribosomal protein L4-2 [Arabidopsis thaliana]
          Length = 406

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           ++V+ LDG+        +++ + +     +  I+  V    S   R   + SK       
Sbjct: 11  VTVQGLDGDMSTDQSTTVTLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   ++  A
Sbjct: 70  AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 129

Query: 110 LRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRA---------- 145
           +             ++      ++    +V+ +      KT   +   +           
Sbjct: 130 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 189

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   ++           A RN+P + L  V+ +N+  +  
Sbjct: 190 KNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAP 249

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ +KSA E LE  +
Sbjct: 250 GGHLGRFVIWTKSAFEKLESIY 271


>gi|121718897|ref|XP_001276228.1| 60S ribosomal protein L4, putative [Aspergillus clavatus NRRL 1]
 gi|119404426|gb|EAW14802.1| 60S ribosomal protein L4, putative [Aspergillus clavatus NRRL 1]
          Length = 372

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 83/266 (31%), Gaps = 62/266 (23%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55
             +++   DG+  G  I +   +F    +  I+ +V    +  KR   + S     +  +
Sbjct: 5   PTVTIATADGKASGATIPLP-AVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +       G+ F P          +    +  A 
Sbjct: 64  ESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQKRFAT 123

Query: 111 RHALSDK-------FCSNDI-------MVIDNLVSK---ECKTKYLVTRFR--------- 144
             AL+            + +       +V+++   +     KTK  V   +         
Sbjct: 124 ASALAASSVPSLLFARGHRVANVAEVPLVVESKTFENAAIAKTKAAVALLKAVGAGADLV 183

Query: 145 -------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184
                                     L++   ++D +    A RNIP +    V  +N+ 
Sbjct: 184 KVQKSKKMRAGKGKMRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFALNLL 243

Query: 185 DILRCSKL----VLSKSAIEALEDRF 206
            +     L    V + SA EAL+  +
Sbjct: 244 QLAPGGHLGRFIVWTSSAFEALDQVY 269


>gi|124506063|ref|XP_001351629.1| 60S ribosomal protein L4, putative [Plasmodium falciparum 3D7]
 gi|23504556|emb|CAD51436.1| 60S ribosomal protein L4, putative [Plasmodium falciparum 3D7]
          Length = 411

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 81/261 (31%), Gaps = 60/261 (22%)

Query: 1   MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS---- 51
           M  +    +V + +G++  G + +   +F    +  ++  V    S  +R   +      
Sbjct: 1   MATIRPVANVYSTNGKNVVGEVEIP-VVFQTPIRNDLIQSVYTNMSKNRRHPYAVKLGAG 59

Query: 52  -KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105
            +  +E   TG    ++    G G  R    +      GG  F P          +  K 
Sbjct: 60  YETSAESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKIWRRWGRKVNLKE 119

Query: 106 RSLALRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF-------- 143
           +  A+  +++            + I       +V+ N +    KTK  V           
Sbjct: 120 KRYAVCSSIAASGVTSLVLARGHRISHLKEVPLVVSNDIESLSKTKEAVNFLVSLGLKDE 179

Query: 144 ------------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                       +   + D   + A RNIP ++L  V  +N+  
Sbjct: 180 VNRLVKSKKIRAGKGKMRNRKYKIRNGPLIIYENDNGVKKAFRNIPGVDLCKVTKLNLLK 239

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     +    + S+SA + L
Sbjct: 240 LAPGGSIGRLCIWSESAFKKL 260


>gi|50411126|ref|XP_457019.1| DEHA2B01210p [Debaryomyces hansenii CBS767]
 gi|49652684|emb|CAG85004.1| DEHA2B01210p [Debaryomyces hansenii]
          Length = 363

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 78/260 (30%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            ++SV + +G+          +F+   +  ++  V    +  KR        +  +  +E
Sbjct: 5   PQVSVVSAEGKQTSTQLPLPAVFSAPVRPDLVHSVFVRVNKNKRQAYAVSDKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA-- 109
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVGGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHVKVNHNEKRYATA 124

Query: 110 -------------LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
                         R    ++     ++V ++  S   KTK  +   +A+     +I   
Sbjct: 125 SAIAASAVTSLVLARGHRVEQVKELPLVVANDFESVT-KTKDAIAVLKAVGAHKDVIKVI 183

Query: 157 CQL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                        D     A RN+P +    V+ + +  +    
Sbjct: 184 KSKKLRAGKGKLRGRRFTQRRGPLVVYAQDNGITKALRNVPGVETSDVKHLGLLQLAPGA 243

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ ++ A E+L+  +
Sbjct: 244 HLGRFVIWTQGAFESLDSVY 263


>gi|300120651|emb|CBK20205.2| unnamed protein product [Blastocystis hominis]
 gi|300122378|emb|CBK22949.2| unnamed protein product [Blastocystis hominis]
 gi|300123878|emb|CBK25149.2| Ribosomal protein L4/L1e [Blastocystis hominis]
          Length = 376

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 58/260 (22%)

Query: 4   LSVRNLD--GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV---- 57
           +SV +++   +    + +   +F    +  ++  V    +   R   +  K         
Sbjct: 10  VSVYSVETANKIVSTVPLP-SVFTAPIRTDVVQFVHTNLNKNHRQPYAVFKRAGHQHSAI 68

Query: 58  -AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108
              TG    ++    G G AR    + +     G+ F P          +    +     
Sbjct: 69  SWGTGRAVARVPRVSGGGTARSGQGAFANMCRKGRMFAPTKIWRKWHRKVNVNQKRYALV 128

Query: 109 ---------ALRHALSDKFCSNDIM--VIDNLVSKECKTKYLVTRF-------------- 143
                    AL  A   K      +  V+D+ + K  KTK  V+                
Sbjct: 129 SALAASAVPALVMARGHKIDGVSEIPFVVDDALCKLTKTKEAVSFLQKNGCYADVERVSE 188

Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                        R   +    ++     +    L  RNIP + L  V  +NV  +    
Sbjct: 189 SKKIRCGKGKMRNRRYTMRVGPMVVYADGEEAVALPFRNIPGVELCNVNRMNVLRMAPGG 248

Query: 191 K----LVLSKSAIEALEDRF 206
                ++ +K+A E LE  +
Sbjct: 249 HVGRFVIWTKAAFERLEALY 268


>gi|15232723|ref|NP_187574.1| 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana]
 gi|17369604|sp|Q9SF40|RL4A_ARATH RecName: Full=60S ribosomal protein L4-1; Short=L1
 gi|6682241|gb|AAF23293.1|AC016661_18 putative 60S ribosomal protein L1 [Arabidopsis thaliana]
 gi|15982715|gb|AAL09727.1| AT3g09630/F11F8_22 [Arabidopsis thaliana]
 gi|27311665|gb|AAO00798.1| putative 60S ribosomal protein L1 [Arabidopsis thaliana]
 gi|30725664|gb|AAP37854.1| At3g09630 [Arabidopsis thaliana]
          Length = 406

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 79/262 (30%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           ++++ LDG+        + + + +     +  I+  V    S   R   + SK       
Sbjct: 10  VTIQTLDGDMSTDQSSTVVLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   ++  A
Sbjct: 69  AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 128

Query: 110 LRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  A++            + I       +V+ +      KT   +   +           
Sbjct: 129 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 188

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   ++           A RN+P + L  V+ +N+  +  
Sbjct: 189 KNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAP 248

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ +KSA E LE  +
Sbjct: 249 GGHLGRFVIWTKSAFEKLESIY 270


>gi|79313167|ref|NP_001030663.1| 60S ribosomal protein L4/L1 (RPL4A) [Arabidopsis thaliana]
          Length = 405

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 79/262 (30%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           ++++ LDG+        + + + +     +  I+  V    S   R   + SK       
Sbjct: 10  VTIQTLDGDMSTDQSSTVVLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   ++  A
Sbjct: 69  AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 128

Query: 110 LRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  A++            + I       +V+ +      KT   +   +           
Sbjct: 129 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 188

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   ++           A RN+P + L  V+ +N+  +  
Sbjct: 189 KNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAP 248

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ +KSA E LE  +
Sbjct: 249 GGHLGRFVIWTKSAFEKLESIY 270


>gi|213403210|ref|XP_002172377.1| 60S ribosomal protein L2 [Schizosaccharomyces japonicus yFS275]
 gi|212000424|gb|EEB06084.1| 60S ribosomal protein L2 [Schizosaccharomyces japonicus yFS275]
          Length = 363

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 73/253 (28%), Gaps = 56/253 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V    G           +F    +  ++  V    +  KR        +  +  +E
Sbjct: 6   PTVNVYTAQGAVSTDALALPFVFKAPIRPDVVRSVHTAVAKNKRQAYAVSEKAGHQTSAE 65

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A+ 
Sbjct: 66  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNQKRYAIA 125

Query: 112 HAL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
            A+          +      +I    +V+ + V    KTK  V   +             
Sbjct: 126 SAVAASGVPSLLLARGHRVEEIAEVPLVLADEVESIKKTKEAVAVLKAVKAYRDVAKVAN 185

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                                 ++   + D     A RNIP + L+ V+ +N+  +    
Sbjct: 186 SRKLRAGKGKMRNRRYVQRRGPLVVYNE-DAGITKAFRNIPGVELVNVRRLNLLQLAPGG 244

Query: 191 K----LVLSKSAI 199
                ++ +KSA 
Sbjct: 245 HLGRFVMWTKSAF 257


>gi|212274759|ref|NP_001130220.1| hypothetical protein LOC100191314 [Zea mays]
 gi|194688582|gb|ACF78375.1| unknown [Zea mays]
 gi|219885387|gb|ACL53068.1| unknown [Zea mays]
          Length = 404

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 82/260 (31%), Gaps = 57/260 (21%)

Query: 4   LSVRNLDGE-DKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +SVR L+G+     + V   D+     +  I+  V +  S   R        +  +  +E
Sbjct: 9   VSVRALEGDMATDSVGVPLPDVLRAPIRPDIVRFVHKLLSCNSRQPYAVSRRAGHQTSAE 68

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +   +R +A+ 
Sbjct: 69  SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIHLRRVAIA 128

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA------------ 145
            AL+            + +       +V+ +      KT   +   +             
Sbjct: 129 SALAATAVPSLVLARGHRVEYVPELPLVVSDSAESIEKTAQAIKVLKQLGASADADKAKD 188

Query: 146 ---------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                                 +I           A RN+P +++  V+ +N+ D+    
Sbjct: 189 SVSIRPGKGKMRNRRYINRKGPLIVYGAEGSKIVKAFRNLPGVDVANVERLNLLDLAPGG 248

Query: 191 K----LVLSKSAIEALEDRF 206
                ++ ++ A + L++ +
Sbjct: 249 HLGRFVIWTECAFKKLDEVY 268


>gi|315229857|ref|YP_004070293.1| 50S ribosomal protein L1e (L4p) [Thermococcus barophilus MP]
 gi|315182885|gb|ADT83070.1| LSU ribosomal protein L1e (L4p) [Thermococcus barophilus MP]
          Length = 255

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 85/256 (33%), Gaps = 53/256 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           +++ V +L+GE    I +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFSLNGEPIEEIELP-KVFETPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
               G  M   +    A   +  V   RGG +A  P     +   + +K + LAL  A++
Sbjct: 60  NIGKGHGMARVERIKTAPRFAAFVPFARGGRRAHPPKVEKIIWEDINRKEKKLALMSAIA 119

Query: 116 DKFCSN---------------DIMVIDNLVS--KECKTKYLVTRFRALDLSNALIIDGC- 157
                +                ++V D L    K  +T+ +  +    D       +   
Sbjct: 120 ATANYDLVRARGHIIDNVPQIPLIVEDELEKIGKTRETREIFKKLGIWDDIERAKKNTKV 179

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK---- 191
                                   +    L ARN P ++++ V  + V ++L        
Sbjct: 180 RAGKGKMRGRRYKKAKGPLIVVAKNEGIILGARNHPGVDVVLVDNLGV-EVLAPGTHPGR 238

Query: 192 -LVLSKSAIEALEDRF 206
             + +K AIE L + +
Sbjct: 239 LTIWTKGAIERLREIY 254


>gi|327353288|gb|EGE82145.1| 60S ribosomal protein L4-A [Ajellomyces dermatitidis ATCC 18188]
          Length = 482

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 77/261 (29%), Gaps = 60/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             ++V N +G+  G       +FA   +  I+  V    +  KR   + S     +  +E
Sbjct: 115 PTVTVANAEGKPSGATHPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 174

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 175 SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINHGQKRFATA 234

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKEC---KTKYLVTRFRA--------- 145
                        +     +++    +V+D+   +     KTK  +              
Sbjct: 235 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDAIVKTKAAIALLNNLGAGPDLVK 294

Query: 146 -------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++    +D +    A RNIP +   PV  +N+  
Sbjct: 295 VEESRKFRAGKGKMRGRRYRQRRGPLVVYNPDVDGKELVKAFRNIPGVETCPVFALNLLQ 354

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     L    V + SA  AL
Sbjct: 355 LAPGGHLGRFIVWTSSAFAAL 375


>gi|330800965|ref|XP_003288502.1| 60S ribosomal protein L4 [Dictyostelium purpureum]
 gi|325081462|gb|EGC34977.1| 60S ribosomal protein L4 [Dictyostelium purpureum]
          Length = 368

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 78/259 (30%), Gaps = 58/259 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58
           + V + + +  G + +   +     +  ++  V    +   R        +  +  +E  
Sbjct: 7   VQVFDAENKVVGKVRLP-SVLTTPIRPDLVNFVHTQINKNDRQAYGAAPYAGEQTSAESW 65

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRS------ 107
            TG    ++    G+G  R    +      GG+ +GP          +    +       
Sbjct: 66  GTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSA 125

Query: 108 ----------LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS-------- 149
                     +A  H +S       +++ +  +    KTK  V   + ++          
Sbjct: 126 LAASAVPALVMARGHRISG-INEVPLVIANESIETVNKTKAAVALLKKVNAYADVEKVID 184

Query: 150 ------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                 +          LA RNIP + +  VQ +N+  +     
Sbjct: 185 SKHIRAGAGKSRNRRYKVRKGPLVVTTGKSKLALAFRNIPGVEIANVQRLNLLKLAPGGH 244

Query: 192 L----VLSKSAIEALEDRF 206
           L    + +KSA E L+  F
Sbjct: 245 LGRFIIWTKSAFEQLDQVF 263


>gi|82705099|ref|XP_726827.1| ribosomal protein L4/L1 [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482400|gb|EAA18392.1| ribosomal protein L4/L1 family, putative [Plasmodium yoelii yoelii]
          Length = 411

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 82/262 (31%), Gaps = 62/262 (23%)

Query: 1   MIELS----VRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS---- 51
           M  +     V ++ G+   G + +   +F    +  ++  +    S   R   +      
Sbjct: 1   MATIKPLANVYSISGKKVVGEVEIP-VVFQTPIRNDLIEYIFSNMSKNTRHPYAVKLGAG 59

Query: 52  -KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105
            +  +E   TG    ++    G G  R    +      GG  F P          +  K 
Sbjct: 60  YETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKINLKE 119

Query: 106 RSLALRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF-------- 143
           +  A+  +++            + I       +V  N +    KTK  +           
Sbjct: 120 KRYAVCSSIAASGITSLVLARGHRISNLKEVPLVASNDIESLQKTKDALXFLISLGLRDE 179

Query: 144 -------------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                              R   +SN  +I   + D   + A RNIP ++L  V+ +++ 
Sbjct: 180 VNRLIKSKKIRAGKGKMRNRKYKISNGPLIIYSK-DSGIKKAFRNIPGVDLCNVEKLSLL 238

Query: 185 DILRCSKL----VLSKSAIEAL 202
            +     +    + S+ A + L
Sbjct: 239 KLAPGGSIGRLCIWSEDAFKKL 260


>gi|301111776|ref|XP_002904967.1| 60S ribosomal protein L4 [Phytophthora infestans T30-4]
 gi|262095297|gb|EEY53349.1| 60S ribosomal protein L4 [Phytophthora infestans T30-4]
          Length = 387

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 80/260 (30%), Gaps = 58/260 (22%)

Query: 4   LSVRNLDGED--KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +SV +++GE        V   +F    +  ++  V    +  +R        +  +  +E
Sbjct: 11  VSVLSVEGETATVASQVVLPAVFTAPIRPDVVNFVHTNMAKNRRQAYGVSREAGHQHSAE 70

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++   +G G       +      GG+ F P          +    R  A+ 
Sbjct: 71  SWGTGRAVSRIPRIQGGGNQSSGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQRRFAVA 130

Query: 112 HALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRF-------------- 143
            AL+       +M              V+D+ V    KT   +                 
Sbjct: 131 SALAASAVPALVMARGHRIEKVPEVPLVLDDSVEATQKTTQALKVLAKIGADVEIEKVKA 190

Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                        R        +I     +   + A RNIP + L  V+ +N+  +    
Sbjct: 191 SKKITTGRGKSRNRRYTTRRGPLIVYANGN-GAEKAFRNIPGVELAHVERLNLLQLAPGG 249

Query: 191 KL----VLSKSAIEALEDRF 206
            +    + +KSA + L+  +
Sbjct: 250 HVGRFIIWTKSAFQKLDALY 269


>gi|239612338|gb|EEQ89325.1| 60S ribosomal protein L4 [Ajellomyces dermatitidis ER-3]
          Length = 372

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 77/261 (29%), Gaps = 60/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             ++V N +G+  G       +FA   +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTVANAEGKPSGATHPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINHGQKRFATA 124

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKEC---KTKYLVTRFRA--------- 145
                        +     +++    +V+D+   +     KTK  +              
Sbjct: 125 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDAIVKTKAAIALLNNLGAGPDLVK 184

Query: 146 -------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++    +D +    A RNIP +   PV  +N+  
Sbjct: 185 VEESRKFRAGKGKMRGRRYRQRRGPLVVYNPDIDGKELVKAFRNIPGVETCPVFALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     L    V + SA  AL
Sbjct: 245 LAPGGHLGRFIVWTSSAFAAL 265


>gi|126274606|ref|XP_001387609.1| predicted protein [Scheffersomyces stipitis CBS 6054]
 gi|126213479|gb|EAZ63586.1| predicted protein [Pichia stipitis CBS 6054]
          Length = 363

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 78/260 (30%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            ++SV +  GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 5   PQVSVVSAKGEQTATQLPLPAVFSAPVRPDIVHSVFVRVNKNKRQAYAVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA-- 109
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWHVKVNHNEKRYATA 124

Query: 110 -------------LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI--- 153
                         R    ++     ++V ++  S   KTK  V   +A+     +I   
Sbjct: 125 SAIAASAVTSLVLARGHRVEQVKELPLVVSNDFESVT-KTKDAVAVLKAVGAHKDVIKVI 183

Query: 154 -----------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                  +     D     A RN+P +    V+ + +  +    
Sbjct: 184 KSKKLRAGKGKLRGRRFTQRRGPLVVYSQDNGIVKALRNVPGVETSDVKHLGLLQLAPGA 243

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ ++ A E+L+  +
Sbjct: 244 HLGRFIIWTQGAFESLDSVY 263


>gi|157124831|ref|XP_001660544.1| 60S ribosomal protein L4 [Aedes aegypti]
 gi|94469276|gb|ABF18487.1| ribosomal protein L4 [Aedes aegypti]
 gi|108873832|gb|EAT38057.1| 60S ribosomal protein L4 [Aedes aegypti]
          Length = 431

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 55/258 (21%)

Query: 4   LSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +S+ +   E     +++   +F    +  +++ V +     KR        +  +  +E 
Sbjct: 10  VSIYSDKNEALKDKNLALPYVFKAPIRPDVVSEVSQLMRRNKRQAYAVSEAAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +   ++  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNLKRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           A+          S     + I    +V+ + V K  KTK  V   R   +   +      
Sbjct: 130 AIAASGVPALVQSRGHVIDGISELPLVVSDEVQKFQKTKQAVAFLRRSKVWADVQKVYKS 189

Query: 159 --------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D   + A RNIP ++ + V  +N+  +     +
Sbjct: 190 QRMRAGRGKMRNRRRVQRRGPLVIYAKDEGLRKAFRNIPGVDTMSVNRMNLLKMAPGGHV 249

Query: 193 ----VLSKSAIEALEDRF 206
               V ++SA   L D +
Sbjct: 250 GRLCVWTESAFAQLNDIY 267


>gi|261202602|ref|XP_002628515.1| 60S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081]
 gi|239590612|gb|EEQ73193.1| 60S ribosomal protein L4 [Ajellomyces dermatitidis SLH14081]
          Length = 372

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 77/261 (29%), Gaps = 60/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             ++V N +G+  G       +FA   +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTVANAEGKPSGATHPLPAVFASPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINHGQKRFATA 124

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKEC---KTKYLVTRFRA--------- 145
                        +     +++    +V+D+   +     KTK  +              
Sbjct: 125 SALAASSVPALLYARGHRISNVPEVPLVVDSKAFENDAIVKTKAAIALLNNLGAGPDLVK 184

Query: 146 -------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++    +D +    A RNIP +   PV  +N+  
Sbjct: 185 VEESRKFRAGKGKMRGRRYRQRRGPLVVYNPDVDGKELVKAFRNIPGVETCPVFALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     L    V + SA  AL
Sbjct: 245 LAPGGHLGRFIVWTSSAFAAL 265


>gi|126178515|ref|YP_001046480.1| 50S ribosomal protein L4P [Methanoculleus marisnigri JR1]
 gi|166234684|sp|A3CSZ8|RL4_METMJ RecName: Full=50S ribosomal protein L4P
 gi|125861309|gb|ABN56498.1| LSU ribosomal protein L4P [Methanoculleus marisnigri JR1]
          Length = 249

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 86/254 (33%), Gaps = 58/254 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           ++  VR L GE    I + E IF  + +  ++ R +      +         +  +  +E
Sbjct: 1   MKAQVRTLTGEIAHEIDLPE-IFREEYRPDLIKRAVLALQSTRFQPHGTNPYAGMRTSAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115
              +G                  V Q  GG  A  P     +   + +K +  ALR A++
Sbjct: 60  SWGSGRGAAQVPRLKNGSR-VARVPQATGGRAAHPPKVEKILVKEINRKEKRKALRSAVA 118

Query: 116 ------------DKFCSNDIMVIDNLVSKECKTKYLVTRF-------------------- 143
                         F  +  +V ++   +  +T  ++                       
Sbjct: 119 ASTYPDLVRERGHLFEGDLPLVFEDRFEEVTRTGDVIAALTALGVYADVERAKGSRKVRA 178

Query: 144 --------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSK 191
                   R     + LI+ G +       AARN+  ++ + V  +N  ++L    +  +
Sbjct: 179 GRGTMRGRRYKQRKSVLIVTGGEP----LRAARNLAGVDAVAVDQLNA-ELLAPGTQAGR 233

Query: 192 L-VLSKSAIEALED 204
           L + ++SAI  LE+
Sbjct: 234 LTIWTESAIRRLEE 247


>gi|307354324|ref|YP_003895375.1| 50S ribosomal protein L4P [Methanoplanus petrolearius DSM 11571]
 gi|307157557|gb|ADN36937.1| 50S ribosomal protein L4P [Methanoplanus petrolearius DSM 11571]
          Length = 248

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 80/251 (31%), Gaps = 50/251 (19%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           ++  ++ +DG+D G I +   +F  + +  ++ + +      +         +  K  +E
Sbjct: 1   MKTQIKTIDGKDAGEIELP-VLFEEEYRPDLIKKAVISIQSMRYQPHGTNPYAGIKTSAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
              +G  +               + Q  GG  A  P    I V  + K+ +  A+R A++
Sbjct: 60  SWGSGRGVAQVPRIKNGSR-VARIPQAVGGRAAHPPKVEKILVKKINKQEKRKAMRSAIA 118

Query: 116 DKFCSNDI------------MVIDNLVSKECKTKYLVT---------------------- 141
                  +            +V +        TK +                        
Sbjct: 119 ATTNEELVLARGHIFEGAVPVVFEEAFEDLKSTKEVADALRAAGLYEDVVRARNSRKVRA 178

Query: 142 ---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL-VL 194
              + R         +     D+    A +N+  +++  V+ +NV  +    +  +L V 
Sbjct: 179 GRGKLRGRRYKQRKSLLIVTGDKQL-RAGKNLAGVDITTVEQLNVELLAPGTQAGRLTVW 237

Query: 195 SKSAIEALEDR 205
           +  AI  L + 
Sbjct: 238 TVPAINRLGEM 248


>gi|68068601|ref|XP_676211.1| 60S ribosomal subunit protein L4/L1 [Plasmodium berghei strain
           ANKA]
 gi|56495800|emb|CAH97802.1| 60S ribosomal subunit protein L4/L1, putative [Plasmodium berghei]
          Length = 411

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 60/261 (22%)

Query: 1   MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS---- 51
           M  +    +V +++G+   G + +   +F    +  ++  +    S   R   +      
Sbjct: 1   MATIRPLANVYSINGKKVVGEVEIP-VVFQTPIRNDLIEYIFTNISKNTRHPYAVKLGAG 59

Query: 52  -KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105
            +  +E   TG    ++    G G  R    +      GG  F P          +  K 
Sbjct: 60  YETSAESWGTGRAVARIPRVPGGGTHRAGQAAFGNMCRGGGMFNPTKIWRRWGRKVNLKE 119

Query: 106 RSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRF-------- 143
           +  A+  +++            + I       +V  N +    KTK  +           
Sbjct: 120 KRYAVCSSIAASGISSLVLARGHRISNLKEVPLVASNDIESIQKTKDALKFLISLGLRDE 179

Query: 144 ------------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                   +   +     D   + A RNIP ++L  V  +N+  
Sbjct: 180 VNRLIKSKKIRAGKGKMRNRKYKISNGPLIIYNKDSGIKKAFRNIPGVDLCNVTKLNLLK 239

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     +    + S+ A + L
Sbjct: 240 LAPGGSIGRLCIWSEDAFKKL 260


>gi|14591534|ref|NP_143616.1| 50S ribosomal protein L4P [Pyrococcus horikoshii OT3]
 gi|6094080|sp|O59420|RL4_PYRHO RecName: Full=50S ribosomal protein L4P
 gi|3258211|dbj|BAA30894.1| 255aa long hypothetical 50S ribosomal protein L4 [Pyrococcus
           horikoshii OT3]
          Length = 255

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 85/255 (33%), Gaps = 51/255 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           +++ V +L+G+    I +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFDLNGQPVDEIELP-RVFLTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115
               G  M   +        +  V   RGG +A  P     +   + KK R LA+  A++
Sbjct: 60  NIGKGHGMARVERLKTPPRYAAFVPFARGGRRAHPPKVEKIIWEGINKKERRLAIMSAIA 119

Query: 116 DKFCSN---------------DIMVID--NLVSKECKTKYLVTRFRALDLSNALI----- 153
                +                ++V+D    VSK  +T+ +  +    +           
Sbjct: 120 ATANYDIVKSRGHIVDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWEDIERAKEKSGV 179

Query: 154 ------------------IDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL 192
                             +     +      ARN P ++++ V  + V  +       +L
Sbjct: 180 RAGKGKMRGRRYKKAKGPLIVVGKNEGIVFGARNHPGVDVVVVDNLGVEHLAPGTHPGRL 239

Query: 193 -VLSKSAIEALEDRF 206
            V + SAIE L + +
Sbjct: 240 TVWTVSAIERLREIY 254


>gi|294882565|ref|XP_002769741.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
 gi|294924292|ref|XP_002778799.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
 gi|239873490|gb|EER02459.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
 gi|239887589|gb|EER10594.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
          Length = 393

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 75/258 (29%), Gaps = 57/258 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +L G      + +  +F    +  ++  V    +  KR        +  +  +   
Sbjct: 8   VSVYDLSGSSSST-TCAPTVFQAPLRPDLVRSVHSAMAKNKRQARGVKFEAGYETAAASW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++    G G  R    +      GG  F P+              +  A+   
Sbjct: 67  GTGRAVSRIPRVPGGGTHRSGQGAFGNMCRGGGMFAPLKTWRRWHRKSNLTEKRHAMASA 126

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRF---------------- 143
                     ++      ++    +V+   V    KTK  V                   
Sbjct: 127 IAASALPPLVMARGHRIGEVPELPLVLSQGVESVQKTKDAVAVLEALGAGADLQRVKDSK 186

Query: 144 -----------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                      R   +    ++   + D     A RNIP I L  V  +N+  +      
Sbjct: 187 KIRAGAGKMRNRRYVMRRGPLVVYAE-DDGLTKAFRNIPGIELCQVDRLNLLQVAPGGTF 245

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++ A + L+  F
Sbjct: 246 GRFIIWTQPAFDRLQQLF 263


>gi|91772084|ref|YP_564776.1| 50S ribosomal protein L4P [Methanococcoides burtonii DSM 6242]
 gi|121691984|sp|Q12ZV0|RL4_METBU RecName: Full=50S ribosomal protein L4P
 gi|91711099|gb|ABE51026.1| LSU ribosomal protein L4P [Methanococcoides burtonii DSM 6242]
          Length = 253

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 90/257 (35%), Gaps = 56/257 (21%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRS 55
           M   ++ +L G  KG I++ E +F+   +  ++ + +      +         +  +  +
Sbjct: 1   MTTANIIDLSGNSKGEIALPE-VFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSA 59

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRSLALRHAL 114
               +G  +               + Q  GG +A  P         + KK + LA+R A+
Sbjct: 60  HSWGSGRGVAQVPRISNGSR-VARIPQAVGGRRAHPPKTETDRTEKINKKEKRLAVRSAI 118

Query: 115 S------------DKFCSNDIMVIDNLVSKECKTKYLVTRF------------------- 143
           +             KF +    V D+ +    K K +++                     
Sbjct: 119 AATIDADLVKARGHKFTAEVPFVADDAIEGLVKIKEVISFLQAAGLYDDIIRAKEGKHIR 178

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCS 190
                    +  +  + LI+ G +       AA N+P +++  V  +N  ++L       
Sbjct: 179 AGKGKRRGRKYKNRKSVLIVTGEES--LLSKAANNLPGVDVATVTALNA-ELLAPGTHAG 235

Query: 191 KL-VLSKSAIEALEDRF 206
           +L V ++SAI  +E  F
Sbjct: 236 RLTVWTQSAITNMEGMF 252


>gi|47225873|emb|CAF98353.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 343

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 62/227 (27%), Gaps = 50/227 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV    GE  G   V   +F    +  ++  V        R        +  +  +E  
Sbjct: 7   ISVYTEKGESTGKNVVMPAVFKAPIRPDVVNFVHTNMRKNNRQPYAVSELAGHQTSAESW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 126

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-- 157
                     +S      +I    +V+++ V    KTK  V   + L   N +       
Sbjct: 127 VAASAIPALVMSKGHRIEEIPEVPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 186

Query: 158 ------------------------QLDRNFQLAARNIPNINLLPVQG 180
                                     D     A RNIP  +    + 
Sbjct: 187 RMRAGKGKMRNRRRIQRRGPCIIYNQDAGVTKAFRNIPGHHSTEREQ 233


>gi|119719147|ref|YP_919642.1| 50S ribosomal protein L4P [Thermofilum pendens Hrk 5]
 gi|119524267|gb|ABL77639.1| LSU ribosomal protein L4P [Thermofilum pendens Hrk 5]
          Length = 267

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 86/254 (33%), Gaps = 51/254 (20%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           E+ V +L+G     I +    F    +  ++ RV       +         +  +  +E 
Sbjct: 10  EVPVYDLNGAAVERIKLP-SFFKSPVRPDLIRRVYIALFTSRLQPKGTDPLAGLRTTAES 68

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSD 116
              G  +           ++  V Q   G +A  P    I    + +K +  AL  AL+ 
Sbjct: 69  LGVGHGIARVARIKGGLRAA-RVVQAVKGRRAHPPRVEKIIREEVNRKEKRKALLSALAA 127

Query: 117 KFCSNDI-------------MVIDNLVSKECKTKYLVTRFRALDLS-------------- 149
               + +             +V+ + +    K + L      L L               
Sbjct: 128 VASRDFVLKRGHVVPDIPLPVVVADDLESISKARDLRAFLEKLGLWKDVERAQTNTRVRA 187

Query: 150 ------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL-V 193
                          ++      R  +LAARN+P ++++  + ++V  +       +L V
Sbjct: 188 GKGKMRGRRYKKPKSLLIVVGEARGIELAARNMPGVDVVTYKELSVLHLAPGGNPGRLTV 247

Query: 194 LSKSAIEALEDRFK 207
            +KSA++ LE+R K
Sbjct: 248 FTKSAVKGLEERLK 261


>gi|326524301|dbj|BAK00534.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 72/252 (28%), Gaps = 57/252 (22%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYT 60
           V +   +    + +   +F    +  I+  V    +  +R        +  +  +E   T
Sbjct: 12  VADAKDKAHEQVVLP-AVFTAPIRPDIVHFVHTSMAKNRRQPYAVKENAGHQHSAESWGT 70

Query: 61  GS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD- 116
           G    ++    G G +R    +       G+ F P  I      P          A +  
Sbjct: 71  GRAVARIPRVSGGGTSRAGQGAFGNMCRKGRMFAPTKIWRRWHRPINTNQKRYAVASAIA 130

Query: 117 --------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR----------------- 144
                       + +       +V+ N V    KTK  V   +                 
Sbjct: 131 ASALPSLVLARGHRVEAVPEIPLVVPNSVESVNKTKNAVALLKTLGALADVEHARDSKKI 190

Query: 145 ----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR----CS 190
                             ++   + D     A RN+P + L  V+ +N+  +        
Sbjct: 191 RAGKGKLRGRRHVARRGPLVVFNE-DHGISQAFRNLPGVELCQVERLNLLQLAPGAHLGR 249

Query: 191 KLVLSKSAIEAL 202
            ++ +KSA E L
Sbjct: 250 FIIWTKSAFERL 261


>gi|322703514|gb|EFY95122.1| 60S ribosomal protein L4, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 351

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 80/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +S+   DG   G       +F    +  I+ RV    +  KR        +  +  +E
Sbjct: 5   PTVSIIGKDGAPTGATHPVPAVFTSPIRPDIVQRVHTGMAKNKRQPYAVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKINQGQKRYATC 124

Query: 112 H-------ALSDKFCSNDIM-------VIDNLVSKEC---KTKYLVTRFR---------- 144
                   A       ++IM       V+D+ V       +T   +   +          
Sbjct: 125 SALAASAAAPLLMARGHEIMTVAEVPLVVDSAVFDSAAVSRTAPALALLKAVGAGPDLEK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++   ++D +    A RNIP +   PV  +N+  
Sbjct: 185 AKNSKKLRAGKGKLRGRRHRQRRGPLVVYNPEVDGKELVKAFRNIPGVETSPVSALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + SA +AL+D +
Sbjct: 245 LAPGGHLGRFIVWTSSAFKALDDIY 269


>gi|258543822|ref|ZP_05704056.1| 50S ribosomal protein L4 [Cardiobacterium hominis ATCC 15826]
 gi|258520911|gb|EEV89770.1| 50S ribosomal protein L4 [Cardiobacterium hominis ATCC 15826]
          Length = 103

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 50/102 (49%)

Query: 105 VRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164
           +   ALR   S+    + + +++ L     KTK  V+    +      ++    L+ N  
Sbjct: 1   MYRAALRSIFSELQRQDRLCLVEELNFSSNKTKDFVSYAAEMGFGQDFLLITESLNENLF 60

Query: 165 LAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           LA+RNIP++ ++ V+ I+   +LR  K+ + K AIE + +  
Sbjct: 61  LASRNIPSVVVVDVEAIDPVLLLRHEKVAIDKLAIERINEWL 102


>gi|327301521|ref|XP_003235453.1| 60S ribosomal protein [Trichophyton rubrum CBS 118892]
 gi|326462805|gb|EGD88258.1| 60S ribosomal protein [Trichophyton rubrum CBS 118892]
          Length = 373

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 77/265 (29%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             ++V + +G+  G       +F    +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTVISAEGKPSGSTHPLPTVFLAPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    R  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124

Query: 112 HALSDKFCSNDIMVIDNLVSKEC-----------------KTKYLVTRFR---------- 144
            AL+       +    + V                     KTK  V+  +          
Sbjct: 125 SALAASSVPALLFARGHRVENVPEVPLVVDSKCFQGDALTKTKAAVSLLQAVGAGADLVK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L+I   ++D +    A RNIP +    V  +N+  
Sbjct: 185 VKESRKVRAGKGKLRGRRYRQRRGPLVIYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V S +A  AL++ +
Sbjct: 245 LAPGGHLGRFIVWSSAAFSALDEIY 269


>gi|226467131|emb|CAX76046.1| putative ribosomal protein L4 [Schistosoma japonicum]
 gi|226467137|emb|CAX76049.1| putative ribosomal protein L4 [Schistosoma japonicum]
          Length = 375

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 76/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V  ++G   G       +F    +  +L  V        R        +  +  +E  
Sbjct: 8   VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG  + P          +  + R  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN--------- 150
                     ++     + +    +V+   V    KTK  V   +A+             
Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187

Query: 151 -----------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               I   + D     A RNIP + L+ V+ +N+  +     + 
Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPGVTLINVRALNLLKLAPGGHMG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + S +A   L+  +
Sbjct: 248 RLAIWSDAAFRQLDKLY 264


>gi|56755229|gb|AAW25794.1| SJCHGC06667 protein [Schistosoma japonicum]
 gi|226467135|emb|CAX76048.1| putative ribosomal protein L4 [Schistosoma japonicum]
 gi|226471656|emb|CAX70909.1| putative ribosomal protein L4 [Schistosoma japonicum]
          Length = 375

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 76/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V  ++G   G       +F    +  +L  V        R        +  +  +E  
Sbjct: 8   VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG  + P          +  + R  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN--------- 150
                     ++     + +    +V+   V    KTK  V   +A+             
Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187

Query: 151 -----------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               I   + D     A RNIP + L+ V+ +N+  +     + 
Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPGVTLINVRALNLLKLAPGGHMG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + S +A   L+  +
Sbjct: 248 RLAIWSDAAFRQLDKLY 264


>gi|297825471|ref|XP_002880618.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata]
 gi|297326457|gb|EFH56877.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata]
          Length = 394

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 46/248 (18%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           ++V++LDG+        + + + +     +  +++ +    S   R   + SK       
Sbjct: 12  VTVQSLDGDMITDQTTTLPLPD-VMKAPVRPDVVSHIHAQISNNSRQPYAVSKHAGHQTS 70

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    ++      G+ F P          +   ++  A
Sbjct: 71  AESWGTGRAVSRIPRVAGGGTHRAGQAALGNMCRSGRMFAPTKTYRRWHRRVNSNLKRHA 130

Query: 110 LRH--------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
           +           ++      ++    +V+ + V    KT   V + +             
Sbjct: 131 IVSAIAATSALVMARGHKIENLPEFPLVVSDYVESVEKTSDAVKKAKDSIGIRSGVGKMR 190

Query: 145 --ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSA 198
                     +I           A RNIP I+L  V+ +++  +         +V +KSA
Sbjct: 191 NRPYVSRKGPLIVYGNEGAKLVKAFRNIPGIDLCHVERLSLLKLAPGGHLGRFVVWTKSA 250

Query: 199 IEALEDRF 206
              LE  +
Sbjct: 251 FAKLELVY 258


>gi|326468935|gb|EGD92944.1| 60S ribosomal protein L4-A [Trichophyton tonsurans CBS 112818]
 gi|326480086|gb|EGE04096.1| 60S ribosomal protein L4-A [Trichophyton equinum CBS 127.97]
          Length = 373

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 76/265 (28%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             ++V + +G+  G       +F    +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTVISAEGKPSGSTHPLPTVFLAPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    R  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124

Query: 112 HALSDKFCSNDIMVIDNLVSKEC-----------------KTKYLVTRFR---------- 144
            AL+       +    + V                     KTK  V   +          
Sbjct: 125 SALAASSVPALLFARGHRVENVPEVPLVVDSKSFQGDALTKTKAAVALLQAVGAGADLVK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L+I   ++D +    A RNIP +    V  +N+  
Sbjct: 185 VKESRKVRAGKGKLRGRRYRQRRGPLVIYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V S +A  AL++ +
Sbjct: 245 LAPGGHLGRFIVWSSAAFSALDEIY 269


>gi|149239628|ref|XP_001525690.1| 60S ribosomal protein L4-B [Lodderomyces elongisporus NRRL YB-4239]
 gi|146451183|gb|EDK45439.1| 60S ribosomal protein L4-B [Lodderomyces elongisporus NRRL YB-4239]
          Length = 363

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 79/260 (30%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            ++SV  + GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 5   PQVSVVTVSGEQASSQLPLPAVFSAPVRPDIVHSVFVRINKNKRQAYAVAENAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWNVKVNHNEKRYATA 124

Query: 112 HALSDK---------------FCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
            A++                      ++V +   S   KTK  V   +A+     ++   
Sbjct: 125 SAIAASAVTSLVLARGHRVENVKEIPLVVSNEFESVT-KTKDAVAVLKAVGAHKDVVKVI 183

Query: 157 CQL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                        D+    A RNIP +    V+ + +  +    
Sbjct: 184 KSKKMRAGKGKLRGRRFTQRRGPLVVYGEDKGLVKALRNIPGVETSSVKHLGLLQLAPGA 243

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ ++SAIEAL+  +
Sbjct: 244 HLGRFIIWTESAIEALDSIY 263


>gi|26450328|dbj|BAC42280.1| putative 60S ribosomal protein [Arabidopsis thaliana]
          Length = 407

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 80/262 (30%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           ++V+ LDG+        +++ + +     +  I+  V    S   R   + SK       
Sbjct: 11  VTVQGLDGDMSTDQSTTVTLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   ++  A
Sbjct: 70  AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 129

Query: 110 LRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  A++            + I       +V+ +      KT   +   +           
Sbjct: 130 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 189

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   ++           A RN+P + L  V+ +N+  +  
Sbjct: 190 KNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAP 249

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ +KSA E LE  +
Sbjct: 250 GGHLGRFVIWTKSAFEKLESIY 271


>gi|297829496|ref|XP_002882630.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata]
 gi|297328470|gb|EFH58889.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata]
          Length = 406

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 77/262 (29%), Gaps = 58/262 (22%)

Query: 2   IELSVRN--LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           + + V +  +  +    + + + +     +  I+  V    S   R   + SK       
Sbjct: 10  VTVQVLDGDMSTDQSSTVVLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   ++  A
Sbjct: 69  AESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 128

Query: 110 LRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  A++            + I       +V+ +      KT   +   +           
Sbjct: 129 IVSAIAATAVPSLVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 188

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   ++           A RN+P + L  V+ +N+  +  
Sbjct: 189 KDSIGIRPGKGKMRNRRYISRKGPLVVYGTEGAKIVKAFRNLPGVELCHVERLNLLKLAP 248

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ +KSA E LE  +
Sbjct: 249 GGHLGRFVIWTKSAFEKLESIY 270


>gi|255728927|ref|XP_002549389.1| 60S ribosomal protein L4-B [Candida tropicalis MYA-3404]
 gi|240133705|gb|EER33261.1| 60S ribosomal protein L4-B [Candida tropicalis MYA-3404]
          Length = 363

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 79/261 (30%), Gaps = 58/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
            ++SV ++ GE  G   +    +F+   +  ++  V    +  KR        +  +  +
Sbjct: 5   PQVSVISVKGEQ-GSAQLPLPAVFSAPVRPDLVHSVFVRVNKNKRQAYAVAENAGHQTSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA- 109
           E   TG    ++    G G  R    +      GG+ F P          +    +  A 
Sbjct: 64  ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWNVKVNHNEKRYAT 123

Query: 110 --------------LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
                          R    ++     ++V +   S   KTK  V   +A+     ++  
Sbjct: 124 ASAIAASAVTSLVLARGHRVEQVKELPLVVSNEFESVT-KTKDAVAVLKAVGAHKDVVKV 182

Query: 156 GCQL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR- 188
                                         D     A RN+P +    V+ + +  +   
Sbjct: 183 IKSKKLRAGKGKLRGRRFTQRRGPLVVYAQDNGIVKALRNVPGVETASVKHLGLLQLAPG 242

Query: 189 ---CSKLVLSKSAIEALEDRF 206
                 ++ ++ A E+L+  +
Sbjct: 243 AHLGRFIIWTQGAFESLDSVY 263


>gi|150399608|ref|YP_001323375.1| 50S ribosomal protein L4P [Methanococcus vannielii SB]
 gi|226730695|sp|A6UQJ1|RL4_METVS RecName: Full=50S ribosomal protein L4P
 gi|150012311|gb|ABR54763.1| ribosomal protein L4/L1e [Methanococcus vannielii SB]
          Length = 252

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 86/256 (33%), Gaps = 55/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           + + V NLDG +KG I +   +F  + +  ++ R +      +         +  +  ++
Sbjct: 1   MNVKVYNLDGSEKGAIELP-SVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
               G      + T  A+ +   V Q  GG +A  P     +     +   L    +   
Sbjct: 60  SIGKGHGKARVRRT--AQGAGAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIA 117

Query: 117 KFCSNDIMVIDNLVSK---------------ECKTKYLVTRFR----------------- 144
              +++I+       +                 KTK +++ F+                 
Sbjct: 118 ASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEADLERAKDGIKI 177

Query: 145 ----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR---CSK 191
                           ++++           A+RN+  ++++    ++   I       +
Sbjct: 178 KAGRAKLRGRKYKKPRSVLVVVGDACDAVA-ASRNLAGVDVITANDLSAIHIAPGTMAGR 236

Query: 192 L-VLSKSAIEALEDRF 206
           L + +++AIE L++RF
Sbjct: 237 LTLWTENAIEKLKERF 252


>gi|212723450|ref|NP_001132773.1| hypothetical protein LOC100194262 [Zea mays]
 gi|194695362|gb|ACF81765.1| unknown [Zea mays]
          Length = 386

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 83/261 (31%), Gaps = 60/261 (22%)

Query: 4   LSVRNLDGED---KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
           +SV +++GE     G + +   +F    +  ++  V    +   R        +  +  +
Sbjct: 11  VSVLSVEGETAAVVGQVVLP-SVFTAPIRPDVVNFVHTNIAKNNRQAYGVSRRAGHQHSA 69

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G +R    +      GG+ F P          +    R  A+
Sbjct: 70  ESWGTGRAVARIPRISGGGTSRAGQGAFGNMCRGGRMFAPTRIWRRWHRKVNVNQRRFAV 129

Query: 111 RHALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRF------------- 143
             AL+            + I       +V+D+ V    KT   V                
Sbjct: 130 ASALAASALPALVTARGHRIEKVPEVPLVLDDAVESVLKTAQAVKVLAKIGADADVEKVK 189

Query: 144 --------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                         R        ++     +   + A RNIP + L  V+ +N+  +   
Sbjct: 190 DSKKVTTGRGKSRNRRYTTRRGPLVVYANAN-GLEKAFRNIPGVELANVERLNLLQLAPG 248

Query: 190 SK----LVLSKSAIEALEDRF 206
                 ++ +KSA E L+  +
Sbjct: 249 GHLGRFVIWTKSAFEKLDAIY 269


>gi|325183777|emb|CCA18236.1| hypothetical protein LOC100194262 [Albugo laibachii Nc14]
          Length = 388

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 83/260 (31%), Gaps = 58/260 (22%)

Query: 4   LSVRNLDGE--DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG-----RSE 56
           +SV ++D +        V   +F    +  ++  V    +   R   + S+G      +E
Sbjct: 11  VSVYSIDADTVKVSSQVVLPTVFTAPIRPDVVKFVHTNMAKNNRQPYAVSRGAGHQHSAE 70

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++   +G G  R    +       G+ F P          +    R  A+ 
Sbjct: 71  SWGTGRAVSRIPRIQGGGTQRAGQGAFGNMCRSGRMFAPTRIWRKWHRKINVNQRRYAVA 130

Query: 112 HALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRF-------------- 143
            AL+     + +               V+D++V    KT + V                 
Sbjct: 131 SALAASALPSLVTARGHRIEKLAEIPCVLDDMVESLQKTSHAVKLLSKIGADEDIEKVKD 190

Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                        R   +    +I     +   + A RNIP + L  V+ +N+  +    
Sbjct: 191 SKKIRTGRGKSRNRRYVMRRGPLIVYASPN-GLEKAFRNIPGVELAHVERLNLLQLAPGG 249

Query: 191 K----LVLSKSAIEALEDRF 206
                ++ +K+A E L+  +
Sbjct: 250 HLGRFVIWTKTAFEKLDALY 269


>gi|303287893|ref|XP_003063235.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455067|gb|EEH52371.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 396

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 75/260 (28%), Gaps = 60/260 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             ++V+N +G       + E +F    +  I+  V    +   R        +  +  +E
Sbjct: 6   PTVTVQNGNGA---TCQLPE-VFLSPIRPDIVNAVHTGLNKNNRQAYAVFNKAGHQTAAE 61

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +  K +  A+ 
Sbjct: 62  SWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRRVNLKQKRYAVC 121

Query: 112 HALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFR------------- 144
            AL+       +M              V+ + V    KT   V   +             
Sbjct: 122 SALAASAVPALLMARGHAVETVPEVPLVVGDDVESIAKTAKAVALLKSIGAYADVEKVKE 181

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                                 ++     D     A RNIP + L  V  + +  +    
Sbjct: 182 SRNIRSGKGKMRNRRYVQRRGPLVVYAD-DDGITKAFRNIPGVELCSVDRLGLLTLAPGG 240

Query: 191 KL----VLSKSAIEALEDRF 206
            +    + +K A E L+  F
Sbjct: 241 HVGRFIIWTKKAFEKLDAVF 260


>gi|195352975|ref|XP_002042986.1| GM16362 [Drosophila sechellia]
 gi|194127051|gb|EDW49094.1| GM16362 [Drosophila sechellia]
          Length = 411

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 78/268 (29%), Gaps = 65/268 (24%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R        +  +  +E 
Sbjct: 10  VSVYTEKNEPAKGKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS--------- 149
           A+          S     + +    +V+ + V K  KTK  V   R L +          
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKRANN 189

Query: 150 ---------------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
                                          +     D   + A RNIP I  + V  +N
Sbjct: 190 WLLYWWCTSRSASVLAVVPCATVARIARRGPLVVYDKDEGLRQAFRNIPGIETINVDKLN 249

Query: 183 VYDILRCSK----LVLSKSAIEALEDRF 206
           +  +         ++ ++SA   L D F
Sbjct: 250 LLKLAPGGHVGRFVIWTESAFARLNDLF 277


>gi|226467127|emb|CAX76044.1| putative ribosomal protein L4 [Schistosoma japonicum]
          Length = 375

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 76/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V  ++G   G       +F    +  +L  V        R        +  +  +E  
Sbjct: 8   VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG  + P          +  + R  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN--------- 150
                     ++     + +    +V+   V    KTK  V   +A+             
Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVQSLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187

Query: 151 -----------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               I   + D     A RNIP + L+ V+ +N+  +     + 
Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPGVTLINVRALNLLKLAPGGHMG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + S +A   L+  +
Sbjct: 248 RLAIWSDAAFRQLDKLY 264


>gi|297806223|ref|XP_002870995.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata]
 gi|297316832|gb|EFH47254.1| 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata]
          Length = 407

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 75/254 (29%), Gaps = 56/254 (22%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS 62
           ++  +    +++ + +     +  I+  V    S   R   + SK       +E   TG 
Sbjct: 19  DMSTDQSTTVTLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGR 77

Query: 63  ---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALS-- 115
              ++    G G  R    +      GG+ F P          +   ++  A+  A++  
Sbjct: 78  AVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAAT 137

Query: 116 -----DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA------------------ 145
                     + I       +V+ +      KT   +   +                   
Sbjct: 138 AVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRP 197

Query: 146 ---------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----L 192
                           ++           A RN+P + L  V+ +N+  +         +
Sbjct: 198 GKGKMRNRRYISRKGPLVVYGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFV 257

Query: 193 VLSKSAIEALEDRF 206
           + +KSA + LE  +
Sbjct: 258 IWTKSAFDKLESIY 271


>gi|146170339|ref|XP_001017488.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila]
 gi|146145029|gb|EAR97243.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila
           SB210]
          Length = 410

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 77/266 (28%), Gaps = 61/266 (22%)

Query: 2   IELSVRNLD--GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI---------GCSK 50
            ++ V +     +          +F    +  I+ +V    +  ++          G + 
Sbjct: 5   PQIHVHDAKEANKQTATKLTLPAVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRGTAG 64

Query: 51  SKGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105
               +E   TG    ++    G+G  R    +       G+ F P+         +    
Sbjct: 65  MGHSAESWGTGRAVARIPRVGGSGTHRSGQAAFGNQCRKGRMFAPLKTYRRVHRRVNVNQ 124

Query: 106 RSLALRHALSDK-------FCSNDI-------MVIDNLVSKECKTKYLVTRFRA------ 145
           +  A+  AL+            + I        V D+ V    KTK  V   +       
Sbjct: 125 KRHAVAAALAASALVPLVFARGHRISNVQELPYVFDDSVESYEKTKQAVAFLKRVGAYDD 184

Query: 146 ---------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                                  L    ++           A RNIP +++  V  +N+ 
Sbjct: 185 VLRVAETKALRAGQGKLRNRRYKLRRGPLVVYGNEKSTLTRALRNIPGVDVCNVNRLNLL 244

Query: 185 DILRCSKL----VLSKSAIEALEDRF 206
            +     +    + ++SA + L + F
Sbjct: 245 QLAPGGHVGRFIIWTESAFKKLNEIF 270


>gi|146302877|ref|YP_001190193.1| 50S ribosomal protein L4P [Metallosphaera sedula DSM 5348]
 gi|145701127|gb|ABP94269.1| LSU ribosomal protein L4P [Metallosphaera sedula DSM 5348]
          Length = 263

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 84/251 (33%), Gaps = 50/251 (19%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSW-----RKRIGCSKSKGRSEVAY 59
            V +L G     + +   IF+   ++ ++ R            + R   +  +  ++   
Sbjct: 11  KVLDLSGNKVKDVQLPL-IFSYPVRKDLIRRAFHSSFTQGLQPKGRDPMAGKRTTAKSFG 69

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG-VHALPKKVRSLALRHALS--- 115
               +        A   +       GG  AF P P       + +K + LA+  AL+   
Sbjct: 70  INLGLARVPRIRGAGEGAL-APNTAGGRLAFPPSPRERVKEDINEKEKRLAVISALASTT 128

Query: 116 ---------DKFCSNDIMVIDNLVSKECKTKYLVTRF----------------------- 143
                     +F  +  +V+ + +    KT  L                           
Sbjct: 129 IKEIVTNRGHRFTGDLPLVVVDDLGGIKKTAELEEILIKLGLEQELKRASYKRIRAGKGK 188

Query: 144 ---RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKLVL-SK 196
              R    +   ++           AA N+P ++++  + ++V  +       +LV+ ++
Sbjct: 189 MRGRKYKRTVGPLLVVHDPKLPIVEAALNLPGVDVVSAKDVSVIHLAPGGHAGRLVIYTE 248

Query: 197 SAIEALEDRFK 207
           SA++ L+DRFK
Sbjct: 249 SALKVLQDRFK 259


>gi|73993914|ref|XP_850171.1| PREDICTED: similar to ribosomal protein L4 isoform 2 [Canis
           familiaris]
          Length = 411

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 76/255 (29%), Gaps = 61/255 (23%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV    GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYYEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKSNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR---- 111
             TG           AR    +      GG+ F P          +    +  A+     
Sbjct: 67  WGTGRA--------VARIPRGAFGNMCRGGRMFAPTKTWCRWHRRVNTTQKRYAICSALA 118

Query: 112 ------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC---- 157
                   +S      ++    +V+++ V    KTK  V   + L   N +         
Sbjct: 119 ASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRM 178

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192
                                   D     A RNIP I LL V  +N+  +     +   
Sbjct: 179 RAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRF 238

Query: 193 -VLSKSAIEALEDRF 206
            + ++SA   L+D +
Sbjct: 239 CIWTESAFRKLDDLY 253


>gi|323508547|dbj|BAJ77167.1| cgd6_3190 [Cryptosporidium parvum]
 gi|323510201|dbj|BAJ77994.1| cgd6_3190 [Cryptosporidium parvum]
          Length = 392

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 82/263 (31%), Gaps = 65/263 (24%)

Query: 4   LSVR--NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +SV   N   +    I +   +F    +  ++  V    S  KR        +  +  +E
Sbjct: 8   VSVFPSNDSTKATSSIPLP-TVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAGHQHSAE 66

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++     +G +R    +      GG  F P          +    +  A+ 
Sbjct: 67  SWGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVA 126

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD---------- 147
                       ++     N++    +VI N +    KT   V  F+             
Sbjct: 127 AAIAATGCPSLVMARGHRINNVPELPLVISNEIQNINKTSTAVEFFKNFGLEEEMKRIES 186

Query: 148 -----------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                             +   ++   + D     A RNI  ++   V+ +N   +LR  
Sbjct: 187 SIAIRCGKGKMRNRRRVCAVGPLVVYAE-DNGIVKAMRNIKGVDTCSVERLN---LLRLA 242

Query: 189 ----CSKL-VLSKSAIEALEDRF 206
                 +L + +K AI+ L++ +
Sbjct: 243 PGGTFGRLTIFTKGAIKRLQEIY 265


>gi|71755521|ref|XP_828675.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70834061|gb|EAN79563.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 351

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 81/253 (32%), Gaps = 56/253 (22%)

Query: 5   SVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
            V NL  E      +   IF       +  + +   ++R Q++  +          E+  
Sbjct: 8   PVFNLKNEVIYTRELDPFIFGMYPEVEELSKNLTYWMVRCQNFASKWDY----ETREIWR 63

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118
              K +   G G  R  ++    +  GG+     P  + +  +  K  S + R  L+ K 
Sbjct: 64  KAKKNWPNTGMGMPRVGNRKNHLYTWGGRTKPSKPWNMLMPTMDVKTWSKSNRMMLTLKM 123

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--------------CQLDRNFQ 164
               + V+D L  +E  T+            +     G               + DR F 
Sbjct: 124 LQGRLQVVDRLTLEEP-TQECYLELCRNMSWDVRHTGGGVLFMDGGSRITPSSEFDRAFF 182

Query: 165 LAA----RN---IPNI------------------------NLLPVQGINVYDILRCSKLV 193
             +    RN    P +                        N +P+   N YD ++  +LV
Sbjct: 183 FGSFFNGRNKIVRPTVLCDEQYDYNKTAAKQRMKGPKGAKNPIPINRFNAYDAMKHDRLV 242

Query: 194 LSKSAIEALEDRF 206
           +++ A+  LED  
Sbjct: 243 ITEGALMQLEDEL 255


>gi|290985315|ref|XP_002675371.1| predicted protein [Naegleria gruberi]
 gi|284088967|gb|EFC42627.1| predicted protein [Naegleria gruberi]
          Length = 365

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 81/266 (30%), Gaps = 63/266 (23%)

Query: 2   IELSVRNLD-GEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV--- 57
             +SV N   GE    +++ + +F    +  I++ +        R      K        
Sbjct: 6   PTVSVFNAKTGEVTKEVALPD-VFQAPIRPDIVSNIANILRMNLRQPYGVHKYAGHQHSA 64

Query: 58  --AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL-- 108
               TG    ++    G G  R    +       G+ F P     + +H + K  R    
Sbjct: 65  ISWGTGRAVSRIPRVSGGGTHRAGQGAFGNMCRKGRMFSPTRTWRVWMHVVKKNERRYAT 124

Query: 109 -------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL--------- 146
                          R    ++     ++V D+L     KTK +V   +           
Sbjct: 125 ASAIAASSITPLVQARGHKVEQVKQLPLVVSDDLQF-VQKTKEVVAFLKKHGLLSDAKKA 183

Query: 147 ------------------DLSNALIIDGCQLD----RNFQLAARNIPNINLLPVQGINVY 184
                              L    ++              LA RN+P +++L V  +N+ 
Sbjct: 184 KDSKTLRKGRGKMRNRRYTLKKGPLVVYNAKPGTQTPPIVLAVRNLPGVDVLNVHQLNLL 243

Query: 185 DILRCSK----LVLSKSAIEALEDRF 206
            +         +V ++SA  AL ++F
Sbjct: 244 KLAPGGHPGRLIVWTESAFTALNEKF 269


>gi|67478655|ref|XP_654711.1| 60S ribosomal protein L4 [Entamoeba histolytica HM-1:IMSS]
 gi|56471776|gb|EAL49320.1| 60S ribosomal protein L4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 431

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 82/256 (32%), Gaps = 57/256 (22%)

Query: 4   LSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG----CSKSKGRSEVA 58
           +++ + + GE +        +F    +  ++  V R QS   R          K  S ++
Sbjct: 7   VTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTKAGKQHSAIS 66

Query: 59  YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
           +      +++    G+G  R+   +       G  F P+          PK++R  A+  
Sbjct: 67  WGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVAS 126

Query: 113 ALSDKF---------------CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-------- 149
            ++                      ++V    +S   KTK  V   + ++          
Sbjct: 127 CIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIA 186

Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++     D     A RNIP ++   V+ ++V ++    
Sbjct: 187 SKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGC 246

Query: 189 --CSKLVLSKSAIEAL 202
                ++ ++SA + L
Sbjct: 247 HIGRFIIWTESAFKKL 262


>gi|241950449|ref|XP_002417947.1| 60S ribosomal protein L4 subunit, putative [Candida dubliniensis
           CD36]
 gi|223641285|emb|CAX45665.1| 60S ribosomal protein L4 subunit, putative [Candida dubliniensis
           CD36]
          Length = 363

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 58/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
            ++SV ++ GE  G   +    +FA   +  ++  V    +  KR        +  +  +
Sbjct: 5   PQVSVISVKGEQ-GSSQLPLPAVFAAPVRPDLVHSVFVRVNKNKRQAYAVAENAGHQTSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA- 109
           E   TG    ++    G G  R    +      GG+ F P          +    +  A 
Sbjct: 64  ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWNVKVNHNEKRYAT 123

Query: 110 --------------LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
                          R    ++     ++V +   S   KTK  V   +A+     ++  
Sbjct: 124 ASAIAASAVTSLVLARGHRVEQVKELPLVVSNEFESVT-KTKDAVAVLKAIGAHKDVVKV 182

Query: 156 GCQL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR- 188
                                         D     A RN+P +    V+ + +  +   
Sbjct: 183 IKSKKLRAGKGKLRGRRFTQRRGPLVVYAQDNGIVKALRNVPGVETASVKHLGLLQLAPG 242

Query: 189 ---CSKLVLSKSAIEALEDRF 206
                 ++ ++ A E+L+  +
Sbjct: 243 AHLGRFIIWTQGAFESLDSVY 263


>gi|21593543|gb|AAM65510.1| 60S ribosomal protein L4-B (L1) [Arabidopsis thaliana]
          Length = 406

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 79/262 (30%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           ++++ LDG+        + + + +     +  I+  V    S   R   + SK       
Sbjct: 10  VTIQTLDGDISTDQSSTVVLPD-VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +   ++  A
Sbjct: 69  AESCGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHA 128

Query: 110 LRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  A++            + I       +V+ +      KT   +   +           
Sbjct: 129 IVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKA 188

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   ++           A RN+P + L  V+ +N+  +  
Sbjct: 189 KNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAP 248

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ +KSA E LE  +
Sbjct: 249 GGHLGRFVIWTKSAFEKLESIY 270


>gi|67902378|ref|XP_681445.1| hypothetical protein AN8176.2 [Aspergillus nidulans FGSC A4]
 gi|40740008|gb|EAA59198.1| hypothetical protein AN8176.2 [Aspergillus nidulans FGSC A4]
 gi|259480947|tpe|CBF74039.1| TPA: 60S ribosomal protein L4, putative (AFU_orthologue;
           AFUA_5G03020) [Aspergillus nidulans FGSC A4]
          Length = 372

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 83/265 (31%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +S+ + +G+  G       +F    +  I+ +V    +  KR   + S     +  +E
Sbjct: 5   PTVSIASGEGKPTGATCPLPAVFNSPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    R  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQRRFATA 124

Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKEC---KTKYLVTRFR---------- 144
            AL+            + I       +V+D+   +     KTK  V   +          
Sbjct: 125 SALAASSVPSLLFARGHRIANVPEVPLVVDSKTFENAAVTKTKAAVALLQALGAGPELVK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++   ++D +    A RNIP I   PV  +N+  
Sbjct: 185 VSKSRKLRAGKGKLRDRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGIETSPVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + SA EAL+  +
Sbjct: 245 LAPGGHLGRFIVWTSSAFEALDTVY 269


>gi|134045078|ref|YP_001096564.1| 50S ribosomal protein L4P [Methanococcus maripaludis C5]
 gi|226730688|sp|A4FVY1|RL4_METM5 RecName: Full=50S ribosomal protein L4P
 gi|132662703|gb|ABO34349.1| LSU ribosomal protein L4P [Methanococcus maripaludis C5]
          Length = 252

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 81/256 (31%), Gaps = 55/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           + + V NLDG +KG I +   +F  + +  ++ R +      K         +  +  ++
Sbjct: 1   MNVKVYNLDGSEKGDIELP-AVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
               G      + T  A+ +   V Q  GG +A  P     +     K   L    +   
Sbjct: 60  SIGKGHGKARVRRT--AQGAGAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIA 117

Query: 117 KFCSNDIMVIDNLVSK---------------ECKTKYLVTRFR----------------- 144
                +I+       +                 KTK ++  F+                 
Sbjct: 118 ASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAADVEKAKDGIKI 177

Query: 145 ----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR---CSK 191
                           ++++           A+RN+  ++++    ++   I       +
Sbjct: 178 KAGRAKLRGRKYKKPRSVLVVVGDACEAIA-ASRNLAGVDVITANDLSAIHIAPGTMAGR 236

Query: 192 L-VLSKSAIEALEDRF 206
           L + +++AIE +  RF
Sbjct: 237 LTLWTENAIEKINGRF 252


>gi|294878597|ref|XP_002768416.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
 gi|239870844|gb|EER01134.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
          Length = 393

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 75/258 (29%), Gaps = 57/258 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +L G      + +  +F    +  ++  V    +  KR        +  +  +   
Sbjct: 8   VSVYDLSGSSSST-TCAPTVFQAPLRPDLVRSVHSAMAKNKRQARGVKFEAGYETAAASW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++    G G  R    +      GG  F P+              +  A+   
Sbjct: 67  GTGRAVSRIPRVPGGGTHRSGQGAFGNMCRGGGMFAPLKTWRRWHRKSNLTEKRHAMASA 126

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRF---------------- 143
                     ++      ++    +V+   V    KTK  V                   
Sbjct: 127 IAASALPPLVMARGHRIGEVPELPLVLSEGVESVQKTKDAVAVLEALGAGADVQRVKDSK 186

Query: 144 -----------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                      R   +    ++   + D     A RNIP I L  V  +N+  +      
Sbjct: 187 KIRAGAGKMRNRRYVMRRGPLVVYAEGD-GLTKAFRNIPGIELCQVDRLNLLQVAPGGTF 245

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++ A + L+  F
Sbjct: 246 GRFIIWTQPAFDRLQQLF 263


>gi|115437794|ref|XP_001217901.1| 60S ribosomal protein L4-2 [Aspergillus terreus NIH2624]
 gi|114188716|gb|EAU30416.1| 60S ribosomal protein L4-2 [Aspergillus terreus NIH2624]
          Length = 372

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 81/266 (30%), Gaps = 62/266 (23%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55
             +++   +G+  G  ++    +F    +  I+ +V    +  KR   + S     +  +
Sbjct: 5   PTVTIATAEGKASG-ATLPLPAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +       G+ F P          +    R  A 
Sbjct: 64  ESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQRRFAT 123

Query: 111 RHALSDKFCSNDIM--------------VIDNLVSK---ECKTKYLVTRFR--------- 144
             AL+       +               V+D+   +     KTK  +   +         
Sbjct: 124 ASALAASSVPALLFARGHRVANIPEVPLVVDSKTFEGAAVTKTKAAIALLQALGAGSELV 183

Query: 145 -------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184
                                     L++   ++D +    A RNIP +    V  +N+ 
Sbjct: 184 KVQKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLL 243

Query: 185 DILRCSKL----VLSKSAIEALEDRF 206
            +     L    V S +A +AL+  +
Sbjct: 244 QLAPGGHLGRFIVWSSAAFQALDQVY 269


>gi|169617367|ref|XP_001802098.1| hypothetical protein SNOG_11861 [Phaeosphaeria nodorum SN15]
 gi|160703390|gb|EAT80905.2| hypothetical protein SNOG_11861 [Phaeosphaeria nodorum SN15]
          Length = 372

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 71/262 (27%), Gaps = 61/262 (23%)

Query: 2   IELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
             ++V +  GE     ++V   I     +  I+  V    +  +R        +  +  +
Sbjct: 4   PTVTVISAKGESTKDTLTVPNVIQGQFIRPDIVHAVHTGMNKNRRQPYAVSEKAGHQTSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +       G+ F P          +    +  A 
Sbjct: 64  ESWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKINLNQKRFAT 123

Query: 111 RHALSDKFCSNDIMVIDNLVSKEC-----------------KTKYLVTRFR--------- 144
             AL+       +M   + VS                    KT   V   +         
Sbjct: 124 ASALAASGSPALLMARGHNVSTVPEVPLVISSTAFADAAIRKTSAAVALLKAVGAGADCE 183

Query: 145 --------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                                      +I +  +  +    A RNIP +    V  +N+ 
Sbjct: 184 KAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKELVKAFRNIPGVETSSVYSMNLL 243

Query: 185 DILRCSKL----VLSKSAIEAL 202
            +     L    V + SA  AL
Sbjct: 244 QLAPGGHLGRFIVWTSSAFGAL 265


>gi|296109264|ref|YP_003616213.1| 50S ribosomal protein L4P [Methanocaldococcus infernus ME]
 gi|295434078|gb|ADG13249.1| 50S ribosomal protein L4P [Methanocaldococcus infernus ME]
          Length = 249

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 90/254 (35%), Gaps = 53/254 (20%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
           M +  V NL+GE    I + + +F  + +  I+ R        +         +  +  +
Sbjct: 1   MAK--VYNLEGEVVKEIELPD-VFYTEYRPDIIRRAFLSAFTARLQPKGTDVLAGLRTSA 57

Query: 56  EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL 114
           +    G  M       +    +  V Q  GG +A  P    I    + +K R LA++ A+
Sbjct: 58  KNIGKGHGMARVDRVPQG--WAVRVPQAVGGRRAHPPKVEKILWERVNRKERLLAIKSAI 115

Query: 115 SDKFCSNDI------------MVIDNLVSKECKTKYLVTRFR------------------ 144
           +       +            ++I++      KTK +   F+                  
Sbjct: 116 AATANLELVKERGHIFEGEVPLIIEDGFENLQKTKEVFEVFKRLGLDKDVERAKKGKKVR 175

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
                           ++   +      LA+RN+P ++++ V+ + +  +       +L 
Sbjct: 176 AGKGKMRGRRYKKKKSVLVVVKDKCPAVLASRNLPGVDVITVKDLGILHLAPGGVAGRLT 235

Query: 193 VLSKSAIEALEDRF 206
           + ++ A+E L++RF
Sbjct: 236 LWTEGALEKLKERF 249


>gi|255955813|ref|XP_002568659.1| Pc21g16520 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590370|emb|CAP96549.1| Pc21g16520 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 370

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 78/263 (29%), Gaps = 58/263 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +S+   +G+  G       +F+   +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVSIATAEGKPSGASHPLPTVFSAPIRPDIVQSVHTGMAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    R  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124

Query: 112 HALSDKFCSND---------------IMVIDNLVSKECKTKYLVTRFR------------ 144
            AL+                      ++V    V    KTK  +   +            
Sbjct: 125 SALAASASPALLFARGHRVANVPEVPLVVDSKAVDSLNKTKAAIALLQAVGAGPDLVKVQ 184

Query: 145 ----------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDIL 187
                                  L++   + D ++   A RNIP +   PV  +N+  + 
Sbjct: 185 KSRKMRAGKGKLRNRRFRQRRGPLVVYNPETDGKDLVKAFRNIPGVETSPVFSLNLLQLA 244

Query: 188 RCSK----LVLSKSAIEALEDRF 206
                   ++ + +A +AL+  +
Sbjct: 245 PGGHLGRFVIWTSTAFQALDQVY 267


>gi|281203811|gb|EFA78007.1| 60S ribosomal protein L4 [Polysphondylium pallidum PN500]
          Length = 367

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 76/255 (29%), Gaps = 58/255 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEVA 58
           + V N +    G + +   +     +  ++  V    +   R   + S     +  +E  
Sbjct: 7   VQVYNGENAVSGKVKLP-AVLTTPIRPDLVNFVHTNVNKNHRQAYAPSSHAGEQTSAESW 65

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRS------ 107
            TG    ++    G+G  R    +      GG+ +GP          +    +       
Sbjct: 66  GTGRAVARIPRVAGSGTHRSGQGAFGNMCRGGRMYGPNKVWRKWNRKVNVNHKRYAVASA 125

Query: 108 ----------LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
                     +A  H +S       ++V ++++    KT   V   + L+    +     
Sbjct: 126 LAASAIPALVMARGHQISQ-IAEVPLVVANSVIDSLTKTNAAVALLKKLNAFADVQRCDD 184

Query: 158 QL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                             A RN+P +++  V  +N+  +     
Sbjct: 185 SKHLRAGAGKSRNRRYTIRRGPLIVCSGKSQLSHAFRNLPGVDVANVSRLNLLKLAPGGH 244

Query: 192 ----LVLSKSAIEAL 202
               ++ ++SA E L
Sbjct: 245 LGRFVIWTQSAFEQL 259


>gi|68482001|ref|XP_715018.1| likely cytosolic ribosomal protein L4 [Candida albicans SC5314]
 gi|46436620|gb|EAK95979.1| likely cytosolic ribosomal protein L4 [Candida albicans SC5314]
 gi|238878218|gb|EEQ41856.1| 60S ribosomal protein L4-B [Candida albicans WO-1]
          Length = 363

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 58/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
            ++SV ++ GE  G   +    +FA   +  ++  V    +  KR        +  +  +
Sbjct: 5   PQVSVISVKGEQ-GSSQLPLPAVFAAPVRPDLVHSVFVRVNKNKRQAYAVAENAGHQTSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA- 109
           E   TG    ++    G G  R    +      GG+ F P          +    +  A 
Sbjct: 64  ESWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRRWNVKVNHNEKRYAT 123

Query: 110 --------------LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
                          R    ++     ++V +   S   KTK  V   +A+     ++  
Sbjct: 124 ASAIAASAVTSLVLARGHRVEQVKELPLVVSNEFESVT-KTKDAVAVLKAVGAHKDVVKV 182

Query: 156 GCQL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR- 188
                                         D     A RN+P +    V+ + +  +   
Sbjct: 183 IKSKKLRAGKGKLRGRRFTQRRGPLVVYAQDNGIVKALRNVPGVETASVKHLGLLQLAPG 242

Query: 189 ---CSKLVLSKSAIEALEDRF 206
                 ++ ++ A E+L+  +
Sbjct: 243 AHLGRFIIWTQGAFESLDSVY 263


>gi|126649327|ref|XP_001388335.1| 60S ribosomal protein-like [Cryptosporidium parvum Iowa II]
 gi|32398896|emb|CAD98361.1| 60S ribosomal protein-like, probable [Cryptosporidium parvum]
 gi|126117429|gb|EAZ51529.1| 60S ribosomal protein-like, putative [Cryptosporidium parvum Iowa
           II]
          Length = 394

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 82/265 (30%), Gaps = 67/265 (25%)

Query: 4   LSVR--NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +SV   N   +    I +   +F    +  ++  V    S  KR        +  +  +E
Sbjct: 8   VSVFPSNDSTKATSSIPLP-TVFVSPLRHDLVRYVFTNMSKNKRQAYGVSTKAGHQHSAE 66

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++     +G +R    +      GG  F P          +    +  A+ 
Sbjct: 67  SWGTGRAVARIPRVSASGTSRSGQGAFGNMCRGGHMFSPNKTYRRFHRKINTTEKRHAVA 126

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALD---------- 147
                       ++     N++    +VI N +    KT   V  F+             
Sbjct: 127 AAIAATGCPSLVMARGHRINNVPELPLVISNEIQNINKTSTAVEFFKNFGKGLEEEMKRI 186

Query: 148 -------------------LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                               +   ++   + D     A RNI  ++   V+ +N   +LR
Sbjct: 187 ESSIAIRCGKGKMRNRRRVCAVGPLVVYAE-DNGIVKAMRNIKGVDTCSVERLN---LLR 242

Query: 189 ------CSKL-VLSKSAIEALEDRF 206
                   +L + +K AI+ L++ +
Sbjct: 243 LAPGGTFGRLTIFTKGAIKRLQEIY 267


>gi|225320687|dbj|BAH29739.1| ribosomal protein L4 [Dicyema japonicum]
          Length = 345

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 85/258 (32%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEV 57
           ++V  ++GE     IS+   +F    +  I+++V        R        +  K  +  
Sbjct: 6   VNVYMMNGERSDNQISLP-SVFKTPIRPDIISKVADEMRKNTRQPYGVSKTAGVKVSAHS 64

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAF--GPVPIIGVHALPKKVRSLALRH 112
             TG    ++    G+G  R S  +      GG  F    +       +  K +  A+  
Sbjct: 65  WGTGRAMARIPRVSGSGTGRASQGAYGNMCRGGHMFGGTKIFRRWYRKINLKQKRYAICS 124

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR-------------- 144
                      ++      +I    +V+DN V    +TK  V   +              
Sbjct: 125 AIAASGVSSLVMAKGHRVEEIPEFPLVVDNDVENLLRTKDAVNLLKKLNAYPDVEKVIDT 184

Query: 145 ------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                          +     +   + D     A RN+P + LLPV+ +N+         
Sbjct: 185 KRIRPGRGKMRNRRHVLRRGPLVIYKEDNGITKAFRNLPGVELLPVEKLNLRVFAPGGHV 244

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ +KSA+E L+  +
Sbjct: 245 GRFVIWTKSAMETLDALY 262


>gi|221057215|ref|XP_002259745.1| 60S ribosomal subunit protein L4/L1 [Plasmodium knowlesi strain H]
 gi|193809817|emb|CAQ40521.1| 60S ribosomal subunit protein L4/L1, putative [Plasmodium knowlesi
           strain H]
          Length = 411

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 77/261 (29%), Gaps = 60/261 (22%)

Query: 1   MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--- 52
           M  +    +V +   +   G + +   +F    +  ++  V +  S  +R   +      
Sbjct: 1   MATVRPVANVYSTKNKQVVGEVEIP-VVFQTPIRNDLIQEVFKNVSKNRRHPYAVKYEAG 59

Query: 53  --GRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105
               +E   TG    ++    G G  R    +      GG  F P          +  K 
Sbjct: 60  YETSAESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKIWRRWGRKVNLKE 119

Query: 106 RSLALRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF-------- 143
           +  A+  +++            + I       +V+ N +    KTK  +           
Sbjct: 120 KRYAVCSSIAASGVTSLVLARGHRISNIKEVPLVVSNDMESISKTKDALKFLITLGLKDE 179

Query: 144 ------------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                       +     D   + A RNIP ++L  V  +N+  
Sbjct: 180 VNRLIKSKKVRAGKGKMRNRKYRMRNGPLIIYNKDSGVKKAFRNIPGVDLCKVTKLNLLK 239

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     +    + S+SA + L
Sbjct: 240 LAPGGSIGRLCIWSESAFKKL 260


>gi|159905510|ref|YP_001549172.1| 50S ribosomal protein L4P [Methanococcus maripaludis C6]
 gi|226730689|sp|A9A9B7|RL4_METM6 RecName: Full=50S ribosomal protein L4P
 gi|159887003|gb|ABX01940.1| ribosomal protein L4/L1e [Methanococcus maripaludis C6]
          Length = 252

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 82/256 (32%), Gaps = 55/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           + + V NLDG +KG I +   +F  + +  ++ R +      K         +  +  ++
Sbjct: 1   MNVKVYNLDGSEKGDIELP-AVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
               G      + T  A+ +   V Q  GG +A  P     +     +   L    +   
Sbjct: 60  SIGKGHGKARVRRT--AQGAGAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIA 117

Query: 117 KFCSNDIMVIDNLVSK---------------ECKTKYLVTRF------------------ 143
              + +I+       +                 KTK ++  F                  
Sbjct: 118 ASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDADLERAKDGVKI 177

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR---CSK 191
                    R      ++++           A+RN+  ++++    ++   I       +
Sbjct: 178 KAGRAKLRGRKYKKPKSVLVVVGDACDAVA-ASRNLAGVDVITANDLSAIHIAPGTMAGR 236

Query: 192 L-VLSKSAIEALEDRF 206
           L + ++SAIE L  RF
Sbjct: 237 LTLWTESAIEKLNGRF 252


>gi|68471073|ref|XP_720313.1| likely mitochondrial ribosomal protein (E. coli L4) [Candida
           albicans SC5314]
 gi|77022564|ref|XP_888726.1| hypothetical protein CaO19_7019 [Candida albicans SC5314]
 gi|46442175|gb|EAL01466.1| likely mitochondrial ribosomal protein (E. coli L4) [Candida
           albicans SC5314]
 gi|76573539|dbj|BAE44623.1| hypothetical protein [Candida albicans]
 gi|238883264|gb|EEQ46902.1| hypothetical protein CAWG_05453 [Candida albicans WO-1]
          Length = 278

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 26/217 (11%)

Query: 12  EDKGVISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           E K  I +    F  +   ++ IL   + +++ + R+G + +  +S+  Y+  K+  QKG
Sbjct: 56  EPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKG 115

Query: 70  TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMVI-- 126
           +GRAR    +        KA     P      LP K+ S  +++A +  +   ++ V+  
Sbjct: 116 SGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 175

Query: 127 --DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLD--RNFQLAARNIPNI--------- 173
             D     +  T+  V+      L+   I +  + +   + +    N             
Sbjct: 176 ELDFQYGYDIITQSFVSVHNLNKLNLLFITNEPRDNLMESIKKFYINEKEFNSLNKKEKP 235

Query: 174 --------NLLPVQGINVYDILRCSKLVLSKSAIEAL 202
                    +L  + + V DILR  ++ +  SA++  
Sbjct: 236 KYLQKLKGKVLTKEDVEVRDILRAHRVFIESSALQWF 272


>gi|67481533|ref|XP_656116.1| 60S ribosomal protein L4 [Entamoeba histolytica HM-1:IMSS]
 gi|56473296|gb|EAL50730.1| 60S ribosomal protein L4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 431

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 82/256 (32%), Gaps = 57/256 (22%)

Query: 4   LSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG----CSKSKGRSEVA 58
           +++ + + GE +        +F    +  ++  V R QS   R          K  S ++
Sbjct: 7   VTIYDGITGEAEKTQVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAIS 66

Query: 59  YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
           +      +++    G+G  R+   +       G  F P+          PK++R  A+  
Sbjct: 67  WGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVAS 126

Query: 113 ALSDKF---------------CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-------- 149
            ++                      ++V    +S   KTK  V   + ++          
Sbjct: 127 CIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIA 186

Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++     D     A RNIP ++   V+ ++V ++    
Sbjct: 187 SKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGC 246

Query: 189 --CSKLVLSKSAIEAL 202
                ++ ++SA + L
Sbjct: 247 HMGRFIIWTESAFKKL 262


>gi|328351776|emb|CCA38175.1| 50S ribosomal protein L4 [Pichia pastoris CBS 7435]
          Length = 256

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +S +      ++ +L + +  +    R+G S   GR E  ++  K+  QKG+GRAR    
Sbjct: 47  ISTEFLNSPLRRDLLWKAVVMEFDNIRVGASNPPGRGEHKFSRRKLRPQKGSGRARVGDA 106

Query: 79  SVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC--- 134
           +      G +A     P      LP KV + A R ALS  +    + +I    S      
Sbjct: 107 NSPTRHNGARALARNAPNDFSTDLPFKVYARAYRIALSSFYIKGHLHIIGGCSSLIPFNR 166

Query: 135 ----------KTKYLVTRFRALDLSNALII----DGCQLDRNFQLAAR--NIPNINLLPV 178
                       K  +  F+A+     L I    D     +N   A +  N   I+LL  
Sbjct: 167 GDQNILELSTDKKEALEIFQAIHNLKGLNILFISDSLNNSQNLNKAIQALNDDQISLLDK 226

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           + + V  +L+ +++ + +++++     F
Sbjct: 227 ENVEVRHLLKANRVFIDQASLQFFAKEF 254


>gi|315049263|ref|XP_003174006.1| 60S ribosomal protein L4-A [Arthroderma gypseum CBS 118893]
 gi|311341973|gb|EFR01176.1| 60S ribosomal protein L4-A [Arthroderma gypseum CBS 118893]
          Length = 373

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 80/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +S+ + DG+  G       +F    +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVSIASADGKPSGSTHPLPTVFLAPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    R  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSK---ECKTKYLVTRFR---------- 144
                        +      ++    +V+D+   +     KTK  +T  +          
Sbjct: 125 SALAASSVPALLFARGHRVENVPEVPLVVDSKAFEGDALTKTKAAITLLQAIGAGPDLVK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L+I   ++D +    A RNIP +    V  +N+  
Sbjct: 185 VKESRKVRAGKGKLRGRRYRQRRGPLVIYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V S +A  AL++ +
Sbjct: 245 LAPGGHLGRFIVWSSAAFSALDEIY 269


>gi|254569220|ref|XP_002491720.1| hypothetical protein [Pichia pastoris GS115]
 gi|238031517|emb|CAY69440.1| hypothetical protein PAS_chr2-1_0890 [Pichia pastoris GS115]
          Length = 261

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 20/208 (9%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           +S +      ++ +L + +  +    R+G S   GR E  ++  K+  QKG+GRAR    
Sbjct: 52  ISTEFLNSPLRRDLLWKAVVMEFDNIRVGASNPPGRGEHKFSRRKLRPQKGSGRARVGDA 111

Query: 79  SVSQFRGGGKAFG-PVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC--- 134
           +      G +A     P      LP KV + A R ALS  +    + +I    S      
Sbjct: 112 NSPTRHNGARALARNAPNDFSTDLPFKVYARAYRIALSSFYIKGHLHIIGGCSSLIPFNR 171

Query: 135 ----------KTKYLVTRFRALDLSNALII----DGCQLDRNFQLAAR--NIPNINLLPV 178
                       K  +  F+A+     L I    D     +N   A +  N   I+LL  
Sbjct: 172 GDQNILELSTDKKEALEIFQAIHNLKGLNILFISDSLNNSQNLNKAIQALNDDQISLLDK 231

Query: 179 QGINVYDILRCSKLVLSKSAIEALEDRF 206
           + + V  +L+ +++ + +++++     F
Sbjct: 232 ENVEVRHLLKANRVFIDQASLQFFAKEF 259


>gi|86451932|gb|ABC97361.1| RPL4 [Streblomastix strix]
          Length = 492

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 83/260 (31%), Gaps = 54/260 (20%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
           M   +V N DG+ +   +V   I     +  ++  V    +  +R        +  +  +
Sbjct: 5   MSLTTVYNTDGKARDTTAVPSVIRYSPIRPDVVHFVHMNLAKNERQPFGRYYLAGHQHSA 64

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G+G +R+   + +    GG  + P+         +    R  A+
Sbjct: 65  ESWGTGRAVARVPRISGSGTSRNGQAAFANSARGGHMYSPLKVWRRWHRMVNVTQRRFAM 124

Query: 111 RHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF------------- 143
             A++            + I       +V+ + V +  KTK  V                
Sbjct: 125 CSAIAASSNPSLVLARGHKIDNVPELPLVVSDDVEQIKKTKEAVKVLAALKASDDVKHSA 184

Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                                 ++     +     A RNI  +++  V  +N+ D+    
Sbjct: 185 ESKRIRVGSGKARNRRYTQRRGVLIVHDQNEGLANAFRNISGVDISNVXRLNIRDLAPGG 244

Query: 191 KL----VLSKSAIEALEDRF 206
            L    + ++ A + L+  +
Sbjct: 245 HLGRFIIWTEGAYKKLDKLY 264


>gi|226294222|gb|EEH49642.1| 60S ribosomal protein L4-A [Paracoccidioides brasiliensis Pb18]
          Length = 372

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 78/265 (29%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++ N +G+  G       +F    +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTIANAEGKPSGETHPLPAVFTSPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124

Query: 112 HALSDKFCSNDIM--------------VIDNLVSKEC---KTKYLVTRFRA--------- 145
            AL+       +               V+D+   +     KTK  +   +          
Sbjct: 125 SALAASSVPALLFARGHRVASVPEVPLVVDSKAFENNAIVKTKAAIALLKNVGAGPDLVK 184

Query: 146 -------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++    +D ++   A RNIP +    V  +N+  
Sbjct: 185 VEESRKIRAGKGKMRGRRYRQRRGPLVVYNPDVDGKDLVKAFRNIPGVETSSVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + SA  AL+  +
Sbjct: 245 LAPGGHLGRFIVWTSSAFAALDAIY 269


>gi|289597192|ref|YP_003483888.1| 50S ribosomal protein L4P [Aciduliprofundum boonei T469]
 gi|289534979|gb|ADD09326.1| 50S ribosomal protein L4P [Aciduliprofundum boonei T469]
          Length = 254

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 78/251 (31%), Gaps = 52/251 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           + ++V  +DGE K  I++   +F    +  ++   +R     +         +  +  +E
Sbjct: 1   MRVNVYTVDGEVKRQITLP-KVFNYPYRPDLIKEAVRIFQLNRVQPHGVSPTAGMRRVAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALS 115
               G  +               +    GG     P    +    +  K+R LA   ALS
Sbjct: 60  SWGPGHGISKMVPRVGHTSRGAIIPSTVGGRAGHPPTTQKVWKRKMNIKMRRLAKYSALS 119

Query: 116 DKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC---- 157
                  +              +V+++        K  +   + L +   +I        
Sbjct: 120 MTSNKVMVAKRGHKFSPDITLPVVVEDEFENISTVKEAIRVLQNLGIYEDIIRASEKRIR 179

Query: 158 ---------------------QLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSKL 192
                                    N     RN+P ++++  + +N  ++L       +L
Sbjct: 180 GGKGKRRGRRYKKKKSVLIVVSNKDNVLKGFRNLPGVDIVTPRELNA-EVLAPGTHAGRL 238

Query: 193 -VLSKSAIEAL 202
            + ++SAI+ +
Sbjct: 239 AIFTESAIKEI 249


>gi|308498083|ref|XP_003111228.1| CRE-RPL-4 protein [Caenorhabditis remanei]
 gi|308240776|gb|EFO84728.1| CRE-RPL-4 protein [Caenorhabditis remanei]
          Length = 345

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 77/254 (30%), Gaps = 56/254 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRS-EVA 58
           ++V +   E          +F    +  +++ ++      KR   +      K  S E  
Sbjct: 7   VTVYDEKYEATQSQIRLPSVFRTPIRPDMVSFIVDQVRRNKRQAHAVNTKAGKQHSAESW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL------- 108
            TG    ++   +G G  R    +      GG  F P+ +         +          
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126

Query: 109 ----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS--------- 149
                       R  + D+     ++V D + S   KTK  VT  R   L          
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKIES-FRKTKEAVTFLRRSHLWADIEKVYNS 185

Query: 150 -----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                +     D     A RNIP +++L V+ +N+  +     L
Sbjct: 186 KRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVLNVERLNLLKLAPGGHL 245

Query: 193 ----VLSKSAIEAL 202
               + ++SA + L
Sbjct: 246 GRLIIWTESAFKKL 259


>gi|45185016|ref|NP_982734.1| AAR191Cp [Ashbya gossypii ATCC 10895]
 gi|44980637|gb|AAS50558.1| AAR191Cp [Ashbya gossypii ATCC 10895]
          Length = 390

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 75/255 (29%), Gaps = 54/255 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V  L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 31  PQVTVHALTGESSSAALPLPAVFSAPIRPDIVHSVFTSVNKNKRQAYAVSEKAGHQTSAE 90

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 91  SWGTGRAVARIPRVGGGGTHRSGQAAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 150

Query: 112 HALSDKFCSNDIMVIDNLVSKEC--------------KTKYLVTRFRALDLSNALIIDGC 157
            A++    ++ ++   + V K                KTK  V   +A+   + ++    
Sbjct: 151 SAIAASAVASLVLARGHRVEKIPEIPLVVSSDLESIKKTKEAVAALKAVGAHSDVVKVLK 210

Query: 158 QL--------------------------DRNFQLAARNIPNINLLPVQGINVYDILR--- 188
                                       D     A RNIP +    V  + +  +     
Sbjct: 211 SKKLRAGKGKYRNRRFTQRRGPLVVYAEDNGIVNAFRNIPGVETANVASLGLLQLAPGAH 270

Query: 189 -CSKLVLSKSAIEAL 202
               ++ ++SA   L
Sbjct: 271 LGRFVIWTESAFAKL 285


>gi|302761726|ref|XP_002964285.1| hypothetical protein SELMODRAFT_166994 [Selaginella moellendorffii]
 gi|300168014|gb|EFJ34618.1| hypothetical protein SELMODRAFT_166994 [Selaginella moellendorffii]
          Length = 401

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 74/250 (29%), Gaps = 57/250 (22%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KM 64
             GV +   ++F    +  ++ +V    +  KR   + SK       +E   TG    ++
Sbjct: 21  KAGVTAALAEVFKSPIRPDVVRQVHTGIAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRI 80

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL------------ 110
               G G  R    +      GG+ F P          L   ++  A+            
Sbjct: 81  PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTYRRWHRKLNINLKRYAVVSALAASAIPSL 140

Query: 111 ---RHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR----------------------- 144
              R    +K     ++V D L S E KT   V   +                       
Sbjct: 141 LLARGHRIEKVPEVPLVVSDALESIE-KTSVAVKALKTLGAYEDVEKVKKSRNIRCGKGK 199

Query: 145 ----ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSK 196
                       +I           A  NIP I +  V  +N+  +     L    + +K
Sbjct: 200 MRNRRYVSRRGPLIIYGTEGAKLVKAFTNIPGIEVCNVNRLNLLQLAPGGHLGRFIIWTK 259

Query: 197 SAIEALEDRF 206
            A E L++ F
Sbjct: 260 CAFEKLDEIF 269


>gi|302766759|ref|XP_002966800.1| hypothetical protein SELMODRAFT_144235 [Selaginella moellendorffii]
 gi|300166220|gb|EFJ32827.1| hypothetical protein SELMODRAFT_144235 [Selaginella moellendorffii]
          Length = 401

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 74/250 (29%), Gaps = 57/250 (22%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KM 64
             GV +   ++F    +  ++ +V    +  KR   + SK       +E   TG    ++
Sbjct: 21  KAGVTAALAEVFKSPIRPDVVRQVHTGIAKNKRQPYAVSKKAGHQTSAESWGTGRAVSRI 80

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL------------ 110
               G G  R    +      GG+ F P          L   ++  A+            
Sbjct: 81  PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTYRRWHRKLNINLKRYAVVSALAASAIPSL 140

Query: 111 ---RHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR----------------------- 144
              R    +K     ++V D L S E KT   V   +                       
Sbjct: 141 LLARGHRIEKVPEVPLVVSDALESIE-KTSVAVKALKTLGAYEDVEKVKKSRNIRCGKGK 199

Query: 145 ----ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSK 196
                       +I           A  NIP I +  V  +N+  +     L    + +K
Sbjct: 200 MRNRRYVSRRGPLIIYGTEGAKLVKAFTNIPGIEVCNVNRLNLLQLAPGGHLGRFIIWTK 259

Query: 197 SAIEALEDRF 206
            A E L++ F
Sbjct: 260 CAFEKLDEIF 269


>gi|302909239|ref|XP_003050029.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256730966|gb|EEU44316.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 352

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 81/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +S+   DG   G       +F    +  I+ +V    +  KR        +  +  +E
Sbjct: 5   PTVSIIGKDGAPTGATHAIPAVFTSPIRPDIVQQVHTGIAKNKRQPYAVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A+ 
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHIKVNQGQKRYAVC 124

Query: 112 HALSDKFCSNDI--------------MVIDNLVSK------------------------- 132
            AL+       +              +V+D+ + +                         
Sbjct: 125 SALAASAAVPLLQARGHQVNSVPEVPLVVDSALFEGAAIAKTAAALGLLKAVGAGADIEK 184

Query: 133 ECKTKYLVT------RFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
             K+K L          R       L+I   + D +    A RNIP +   PV  +N+  
Sbjct: 185 VKKSKKLRAGKGKLRGRRHRQRRGPLVIYDAETDGKELVTAFRNIPGVETSPVTALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + +A +AL+  +
Sbjct: 245 LAPGGHLGRFIVWTSAAFKALDQIY 269


>gi|125546040|gb|EAY92179.1| hypothetical protein OsI_13894 [Oryza sativa Indica Group]
          Length = 817

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 73/241 (30%), Gaps = 55/241 (22%)

Query: 21  EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQKGTGR 72
             +     +  ++    +  S  +R        +  +  +E   TG    ++    G G 
Sbjct: 28  PQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 87

Query: 73  ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123
            R    +      GG+ F P          +  ++R +A+  AL+            + I
Sbjct: 88  HRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRI 147

Query: 124 -------MVIDNLVSKECKTKYLVTRFRA---------------------------LDLS 149
                  +V+ + +    KT   +   +                                
Sbjct: 148 EGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKAKDSVAIRAGKGKMRNRRYINR 207

Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDR 205
              +I           A RN+P +++  V+ +N+ D+         ++ ++ A + L++ 
Sbjct: 208 KGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEV 267

Query: 206 F 206
           +
Sbjct: 268 Y 268


>gi|150401235|ref|YP_001325001.1| 50S ribosomal protein L4P [Methanococcus aeolicus Nankai-3]
 gi|226730685|sp|A6UV67|RL4_META3 RecName: Full=50S ribosomal protein L4P
 gi|150013938|gb|ABR56389.1| ribosomal protein L4/L1e [Methanococcus aeolicus Nankai-3]
          Length = 252

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 86/257 (33%), Gaps = 57/257 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           +++ V N+DG +KG   +S  +F  + +  ++ R        +         +  +  ++
Sbjct: 1   MKVKVYNMDGSEKGETELS-AVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL-- 114
               G      + TG+       V Q  GG +   P     +H    K   L    +   
Sbjct: 60  SIGKGHGRARVQRTGQGA--GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIA 117

Query: 115 ------SDKFCSN--------DIMVIDNLVSKECKTKYLVTRFRA--------------- 145
                   K   +         ++V D+  S + KTK ++  F+                
Sbjct: 118 ASANIEMVKNRGHVVETVPSVPLIVSDDFESLK-KTKEVLETFKNLGLDGDVQRAKDGIK 176

Query: 146 ------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCS 190
                            ++++           A++N+P ++++    + V  I       
Sbjct: 177 IRSGIGKLRGRKYRKPKSVLVVVSGACDAV-KASKNLPGVDVISANDLGVMHIAPGADSG 235

Query: 191 KL-VLSKSAIEALEDRF 206
           +L + ++SA+E +  RF
Sbjct: 236 RLTLWTESAVEEINKRF 252


>gi|310771950|emb|CBH28912.1| 60S RIBOSOMAL PROTEIN L4 [Anncaliia algerae]
          Length = 326

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 86/261 (32%), Gaps = 56/261 (21%)

Query: 1   MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           + +++  N DG+     + VS+ +F +  +  ++    R  +  +R        +  +  
Sbjct: 2   ISQVNCYNTDGQTVEKTLEVSD-VFRVPIRADLIQDAFRCLNMARRQPYAVSPLAGMQHS 60

Query: 55  SEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +    TG  M       G+G  R    + + F   G+   P               +  A
Sbjct: 61  AHSWGTGRAMARVPRVSGSGTRRAGQAAFANFARKGRLAHPTKVTRRWQRKFNLNAKRHA 120

Query: 110 LRHAL------SDKFCSNDIM--------VIDNLVSKECKTKYLVTRFRAL--------- 146
           +   +      S       ++        VI N V++  KTK  V   +           
Sbjct: 121 IAMGIAASAVPSLLQSRGHVIDNLKSVPLVISNKVNETSKTKEAVQILKNFGLKDQLEKV 180

Query: 147 -----------------DLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL-- 187
                                  I+   +   +   A RNI  ++L+ V  +N+ D+   
Sbjct: 181 SNNVKIRAGKGKARNRRYKMKKGILIVYKEKTSMVKAFRNIEGVDLIGVDRLNIIDLCPG 240

Query: 188 -RCSKLVL-SKSAIEALEDRF 206
            +  +L+L  + A EAL D +
Sbjct: 241 GQAGRLILWVEDAFEALSDIY 261


>gi|67474022|ref|XP_652760.1| 60S ribosomal protein L4 [Entamoeba histolytica HM-1:IMSS]
 gi|56469645|gb|EAL47374.1| 60S ribosomal protein L4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 431

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 82/256 (32%), Gaps = 57/256 (22%)

Query: 4   LSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG----CSKSKGRSEVA 58
           +++ + + GE +        +F    +  ++  V R QS   R          K  S ++
Sbjct: 7   VTIYDGITGEAEKTPVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAIS 66

Query: 59  YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
           +      +++    G+G  R+   +       G  F P+          PK++R  A+  
Sbjct: 67  WGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVAS 126

Query: 113 ALSDKF---------------CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-------- 149
            ++                      ++V    +S   KTK  V   + ++          
Sbjct: 127 CIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIA 186

Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++     D     A RNIP ++   V+ ++V ++    
Sbjct: 187 SKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGC 246

Query: 189 --CSKLVLSKSAIEAL 202
                ++ ++SA + L
Sbjct: 247 HIGRFIIWTESAFKKL 262


>gi|268563999|ref|XP_002638989.1| C. briggsae CBR-RPL-4 protein [Caenorhabditis briggsae]
 gi|187022098|emb|CAP38869.1| CBR-RPL-4 protein [Caenorhabditis briggsae AF16]
          Length = 345

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 56/258 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRS-EVA 58
           ++V +   E          +F    +  +++ +       KR   +      K  S E  
Sbjct: 7   VTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNKRQAHAVNTKAGKQHSAESW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL------- 108
            TG    ++   +G G  R    +      GG  F P+ +         +          
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126

Query: 109 ----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS--------- 149
                       R  + D+     ++V D + S   KTK  VT  R   L          
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKIES-FRKTKEAVTFLRRSHLWADIEKVYHS 185

Query: 150 -----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK- 191
                                +     D     A RNIP +++L V+ +N+  +      
Sbjct: 186 KRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVLNVERLNLLKLAPGGHL 245

Query: 192 ---LVLSKSAIEALEDRF 206
              ++ ++SA + L+  +
Sbjct: 246 GRLVIWTESAFKKLDAIY 263


>gi|150402716|ref|YP_001330010.1| 50S ribosomal protein L4P [Methanococcus maripaludis C7]
 gi|226730690|sp|A6VHD3|RL4_METM7 RecName: Full=50S ribosomal protein L4P
 gi|150033746|gb|ABR65859.1| ribosomal protein L4/L1e [Methanococcus maripaludis C7]
          Length = 252

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 55/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           + + V NLDG +KG I +   +F  + +  ++ R +      K         +  +  ++
Sbjct: 1   MNVKVYNLDGSEKGDIELP-AVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
               G      + T  A+ +   V Q  GG +A  P     +     +   L    +   
Sbjct: 60  SIGKGHGKARVRRT--AQGAGAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIA 117

Query: 117 KFCSNDIM---------------VIDNLVSKECKTKYLVTRFR----------------- 144
                +I+               V++       KTK ++  F+                 
Sbjct: 118 ASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDADLARAKDGIKI 177

Query: 145 ----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR---CSK 191
                           ++++           A+RN+  ++++    ++   I       +
Sbjct: 178 KAGRAKLRGRKYKKPKSVLVVVGDACEAIA-ASRNLAGVDVITANDLSAIHIAPGTMAGR 236

Query: 192 L-VLSKSAIEALEDRF 206
           L + +++AIE +  RF
Sbjct: 237 LTLWTENAIEKINGRF 252


>gi|167395471|ref|XP_001741540.1| 60S ribosomal protein L4 [Entamoeba dispar SAW760]
 gi|167396309|ref|XP_001742003.1| 60S ribosomal protein L4 [Entamoeba dispar SAW760]
 gi|167539804|ref|XP_001741360.1| 60S ribosomal protein L4 [Entamoeba dispar SAW760]
 gi|165893200|gb|EDR21540.1| 60S ribosomal protein L4, putative [Entamoeba dispar SAW760]
 gi|165893876|gb|EDR21994.1| 60S ribosomal protein L4, putative [Entamoeba dispar SAW760]
 gi|165894061|gb|EDR22145.1| 60S ribosomal protein L4, putative [Entamoeba dispar SAW760]
          Length = 431

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 82/256 (32%), Gaps = 57/256 (22%)

Query: 4   LSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG----CSKSKGRSEVA 58
           +++ + + GE +        +F    +  ++  V R QS   R          K  S ++
Sbjct: 7   VTIYDGITGEAEKTPVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAIS 66

Query: 59  YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
           +      +++    G+G  R+   +       G  F P+          PK++R  A+  
Sbjct: 67  WGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVAS 126

Query: 113 ALSDKF---------------CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-------- 149
            ++                      ++V    +S   KTK  V   + ++          
Sbjct: 127 CIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIA 186

Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++     D     A RNIP ++   V+ ++V ++    
Sbjct: 187 SKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGC 246

Query: 189 --CSKLVLSKSAIEAL 202
                ++ ++SA + L
Sbjct: 247 HMGRFIIWTESAFKKL 262


>gi|48477713|ref|YP_023419.1| 50S ribosomal protein L4P [Picrophilus torridus DSM 9790]
 gi|48430361|gb|AAT43226.1| large subunit ribosomal protein L1E [Picrophilus torridus DSM 9790]
          Length = 254

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 85/259 (32%), Gaps = 61/259 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++ ++ +L+GE KG I +   IF ++P++ IL    R  +   R        +  +   +
Sbjct: 1   MKANIYDLNGEIKGEIELP-KIFEIRPREDILREAFRAITLSYRQPYGASPDAGMRRVGQ 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG---VHALPKKVRSLALRHA 113
                  +       R    S++V      G      P         + K+ R LA   A
Sbjct: 60  NLGPNHGISR---IPRLAGGSRAVLLGSVVGGKSAHAPRSDKVLYKKINKRERKLARFTA 116

Query: 114 LSDKFCSNDIM----------------VIDNLVSKECKTKYLVTRFRA------------ 145
           ++       I+                ++ N + K  KT+  V  F+             
Sbjct: 117 IALTASREHIIKRGHRIDEDSNLTFPVIVTNDLEKIKKTRDAVEFFKKLGLYDDILRSKE 176

Query: 146 ---------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                               +L+I G   D     A  ++P +++     +++  +    
Sbjct: 177 NKKIRPGRGKMRNRTYKQPKSLLIVGTSYDNL--KAFSSLPGVDIATPSSLSIRKLAPGG 234

Query: 191 K----LVLSKSAIEALEDR 205
                 + ++SAI +L++ 
Sbjct: 235 TGGRLTIFTESAISSLKEV 253


>gi|295657284|ref|XP_002789212.1| 60S ribosomal protein L4-A [Paracoccidioides brasiliensis Pb01]
 gi|226284459|gb|EEH40025.1| 60S ribosomal protein L4-A [Paracoccidioides brasiliensis Pb01]
          Length = 372

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 76/261 (29%), Gaps = 60/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++ N +G+  G       +F    +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTIANAEGKPSGETHPLPAVFTSPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124

Query: 112 HALSDKFCSNDIM--------------VIDNLVSKEC---KTKYLVTRFRA--------- 145
            AL+       +               V+D+   +     KTK  +   +          
Sbjct: 125 SALAASSVPALLFARGHRVASVPEVPLVVDSKAFENNAIVKTKAAIALLKNVGAGPDLVK 184

Query: 146 -------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++    +D ++   A RNIP +    V  +N+  
Sbjct: 185 VEESRKIRAGKGKMRGRRYRQRRGPLVVYNPDVDGKDLVKAFRNIPGVETSSVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     L    V + SA  AL
Sbjct: 245 LAPGGHLGRFIVWTSSAFAAL 265


>gi|281500834|pdb|3JYW|D Chain D, Structure Of The 60s Proteins For Eukaryotic Ribosome
           Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
           At 8.9a Resolution
          Length = 257

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 73/258 (28%), Gaps = 56/258 (21%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E 
Sbjct: 1   QVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAES 60

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G  R    +      GG+ F P          +    +  A   
Sbjct: 61  WGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATAS 120

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR-------------- 144
                      L+       I    +V+   +    KTK  V   +              
Sbjct: 121 AIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKS 180

Query: 145 -------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR--- 188
                                ++   + D     A RN+P +    V  +N+  +     
Sbjct: 181 KKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGAH 239

Query: 189 -CSKLVLSKSAIEALEDR 205
               ++ +++A   L+  
Sbjct: 240 LGRFVIWTEAAFTKLDQV 257


>gi|119498945|ref|XP_001266230.1| 60S ribosomal protein L4, putative [Neosartorya fischeri NRRL 181]
 gi|119414394|gb|EAW24333.1| 60S ribosomal protein L4, putative [Neosartorya fischeri NRRL 181]
          Length = 373

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 83/266 (31%), Gaps = 62/266 (23%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRS 55
             +++   DG+  G  ++    +F    +  I+ +V    +  KR   + S     +  +
Sbjct: 5   PTVTIATADGKPSG-ATLPLPAVFTAPIRPDIVQQVHTGMAKNKRQPYAVSEKAGEQTSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +       G+ F P          +    +  A 
Sbjct: 64  ESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNLGQKRFAT 123

Query: 111 RHALSDK-------FCSNDI-------MVIDNLVSKE----------------------- 133
             AL+            + I       +V+++   +                        
Sbjct: 124 ASALAASSVPSLLFARGHRIANVPEVPLVVESKTFENAAIAKTKAAIALLKAVGAGAELV 183

Query: 134 --CKTKYLVT------RFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVY 184
              K+K +          R       L++   ++D +    A RNIP +    V  +N+ 
Sbjct: 184 KVQKSKKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLL 243

Query: 185 DILRCSKL----VLSKSAIEALEDRF 206
            +     L    V + +A EAL+  +
Sbjct: 244 QLAPGGHLGRFIVWTSAAFEALDQVY 269


>gi|317032010|ref|XP_001393829.2| 60S ribosomal protein L4-B [Aspergillus niger CBS 513.88]
          Length = 390

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 82/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   DG+  G       +FA   +  ++ +V    +  KR   + S     +  +E
Sbjct: 23  PTVTIAGADGKPTGATYPLPAVFASPIRLDVVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 82

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    R  A  
Sbjct: 83  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 142

Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE---CKTKYLVTRFR---------- 144
            AL+            + +       +V+D+   +     KTK  V   +          
Sbjct: 143 SALAASSVPSLLFARGHRVANVPEVPLVVDSKTFENSAVTKTKAAVALLQAVGAGADLVK 202

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++   ++D +    A RNIP +    V  +N+  
Sbjct: 203 VQKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 262

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V S +A EAL+  +
Sbjct: 263 LAPGGHLGRFIVWSSAAFEALDKVY 287


>gi|190408801|gb|EDV12066.1| ribosomal protein L4A [Saccharomyces cerevisiae RM11-1a]
          Length = 362

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 124 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +    V  +N+  +    
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 243 HLGRFVIWTEAAFAKLDQVW 262


>gi|45359107|ref|NP_988664.1| 50S ribosomal protein L4P [Methanococcus maripaludis S2]
 gi|46396576|sp|P60846|RL4_METMP RecName: Full=50S ribosomal protein L4P
 gi|45047982|emb|CAF31100.1| LSU Ribosomal protein L4P [Methanococcus maripaludis S2]
          Length = 252

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 82/256 (32%), Gaps = 55/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           + + V NLDG +KG I +   +F  + +  ++ R +      K         +  +  ++
Sbjct: 1   MNVKVYNLDGSEKGDIELP-AVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
               G      + T  A+ +   V Q  GG +A  P     +     +   L    +   
Sbjct: 60  SIGKGHGKARVRRT--AQGAGAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIA 117

Query: 117 KFCSNDIMVIDNLVSK---------------ECKTKYLVTRFR----------------- 144
              + +I+       +                 KTK ++  F+                 
Sbjct: 118 ASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDADLERAKDGVKI 177

Query: 145 ----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR---CSK 191
                           ++++           A+RN+  ++++    ++   I       +
Sbjct: 178 RAGRGKLRGRKYIKPKSVLVVVGDACEAIT-ASRNLAGVDVITANDLSAIHIAPGTMAGR 236

Query: 192 L-VLSKSAIEALEDRF 206
           L + +++AIE +  RF
Sbjct: 237 LTLWTENAIEKINGRF 252


>gi|226467129|emb|CAX76045.1| putative ribosomal protein L4 [Schistosoma japonicum]
          Length = 375

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 54/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V  ++G   G       +F    +  +L  V        R        +  +  +E  
Sbjct: 8   VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG  + P          +  + R  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN--------- 150
                     ++     + +    +V+   V    K+K  V   +A+             
Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKSKDAVKVLKAIRAWPDIQKVYNSQ 187

Query: 151 -----------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               I   + D     A RNIP + L+ V+ +N+  +     + 
Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPGVTLINVRALNLLKLAPGGHMG 247

Query: 193 ---VLSKSAIEALEDRF 206
              + S +A   L+  +
Sbjct: 248 RLAIWSDAAFRQLDKLY 264


>gi|134078379|emb|CAK40370.1| unnamed protein product [Aspergillus niger]
          Length = 372

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 82/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   DG+  G       +FA   +  ++ +V    +  KR   + S     +  +E
Sbjct: 5   PTVTIAGADGKPTGATYPLPAVFASPIRLDVVQQVHTGMAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    R  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKVNVGQRRFATA 124

Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKE---CKTKYLVTRFR---------- 144
            AL+            + +       +V+D+   +     KTK  V   +          
Sbjct: 125 SALAASSVPSLLFARGHRVANVPEVPLVVDSKTFENSAVTKTKAAVALLQAVGAGADLVK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++   ++D +    A RNIP +    V  +N+  
Sbjct: 185 VQKSRKMRAGKGKLRNRRFRQRRGPLVVYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V S +A EAL+  +
Sbjct: 245 LAPGGHLGRFIVWSSAAFEALDKVY 269


>gi|225684915|gb|EEH23199.1| 60S ribosomal protein L4-A [Paracoccidioides brasiliensis Pb03]
          Length = 372

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 76/261 (29%), Gaps = 60/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++ N +G+  G       +F    +  I+  V    +  KR   + S     +  +E
Sbjct: 5   PTVTIANAEGKPSGETHPLPAVFTSPIRPDIVQSVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRAGRMFAPTKVWRKWHQKINLGQKRFATA 124

Query: 112 HALSDKFCSNDIM--------------VIDNLVSKEC---KTKYLVTRFRA--------- 145
            AL+       +               V+D+   +     KTK  +   +          
Sbjct: 125 SALAASSVPALLFARGHRVASVPEVPLVVDSKAFENNAIVKTKAAIALLKNVGAGPDLVK 184

Query: 146 -------------------LDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++    +D ++   A RNIP +    V  +N+  
Sbjct: 185 VEESRKIRAGKGKMRGRRYRQRRGPLVVYNPDVDGKDLVKAFRNIPGVETSSVFSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     L    V + SA  AL
Sbjct: 245 LAPGGHLGRFIVWTSSAFAAL 265


>gi|49258842|pdb|1S1I|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
           Yeast Obtained By Docking Atomic Models For Rna And
           Protein Components Into A 11.7 A Cryo-Em Map. This File,
           1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
           In File 1s1h
          Length = 361

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 3   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 62

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 63  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 122

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 123 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLK 182

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +    V  +N+  +    
Sbjct: 183 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGA 241

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 242 HLGRFVIWTEAAFTKLDQVW 261


>gi|219113891|ref|XP_002176132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402924|gb|EEC42883.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 334

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 77/253 (30%), Gaps = 55/253 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEVAY 59
           +SV +L G+  G +S+   +     +  I+  V    +   R   +      K     ++
Sbjct: 7   VSVFSLSGDKSGDVSLP-AVMTAPLRPDIVQFVHTNMNKNHRQAYAVNIRAGKQVVASSW 65

Query: 60  TG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
                 +++    G G +R    +      GG+ F P          +    +  A+   
Sbjct: 66  GTGRAVARIPRVGGGGTSRSGQGAFGNMCRGGRMFDPTKTWRKWNKKINISQKRYAVASA 125

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRF---------------- 143
                     +S     +++    +V++N V    KT                       
Sbjct: 126 LAATAVPALVMSRGHVVDNVPEIPLVVENAVESAKKTSAAKDILSAIGALDDVEKAGESK 185

Query: 144 ----------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               +   + +   + A RN+P + L  V  +N+  +     + 
Sbjct: 186 QIRAGKGKMRNRRYTLRRGPLVIYKSNDGVEQAFRNLPGVELCCVDRLNLLQLAPGGHMG 245

Query: 193 ---VLSKSAIEAL 202
              + S++A+E L
Sbjct: 246 RFCIWSQAALEEL 258


>gi|260942443|ref|XP_002615520.1| hypothetical protein CLUG_04402 [Clavispora lusitaniae ATCC 42720]
 gi|238850810|gb|EEQ40274.1| hypothetical protein CLUG_04402 [Clavispora lusitaniae ATCC 42720]
          Length = 356

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 54/259 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            ++SV +  GE          +FA   +  ++  V    +  KR        +  +  +E
Sbjct: 4   PQVSVVSAQGEKTSSQLPLPAVFAAPIRADVVHSVFVRVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G+G  R    +      GG+ F P          + +  +  A  
Sbjct: 64  SWGTGRAVARIPRVGGSGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHVKVNQNEKRYATA 123

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
            A++    ++ +              +V+ N      KTK  V   +A+     ++    
Sbjct: 124 SAIAASAVTSLVLARGHRVEQVAELPLVVSNDFESVKKTKEAVAVLKAVGAHKDIVRVLK 183

Query: 158 Q--------------------------LDRNFQLAARNIPNINLLPVQGINVYDILR--- 188
                                       D     A RNIP ++   V  + +  +     
Sbjct: 184 SKKMRAGKGKLRNRRFVQKKGPLVVYANDNGISKALRNIPGVDAAHVSRLGLLQLAPGAH 243

Query: 189 -CSKLVLSKSAIEALEDRF 206
               ++ +++A E+L+  +
Sbjct: 244 LGRFVIWTQAAFESLDSVY 262


>gi|167392486|ref|XP_001740178.1| 60S ribosomal protein L4 [Entamoeba dispar SAW760]
 gi|165895856|gb|EDR23445.1| 60S ribosomal protein L4, putative [Entamoeba dispar SAW760]
          Length = 431

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 82/256 (32%), Gaps = 57/256 (22%)

Query: 4   LSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG----CSKSKGRSEVA 58
           +++ + + GE +        +F    +  ++  V R QS   R          K  S ++
Sbjct: 7   VTIYDGITGEAEKTPVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAIS 66

Query: 59  YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
           +      +++    G+G  R+   +       G  F P+          PK++R  A+  
Sbjct: 67  WGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVVS 126

Query: 113 ALSDKF---------------CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-------- 149
            ++                      ++V    +S   KTK  V   + ++          
Sbjct: 127 CIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIA 186

Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++     D     A RNIP ++   V+ ++V ++    
Sbjct: 187 SKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGC 246

Query: 189 --CSKLVLSKSAIEAL 202
                ++ ++SA + L
Sbjct: 247 HMGRFIIWTESAFKKL 262


>gi|323349506|gb|EGA83730.1| Rpl4bp [Saccharomyces cerevisiae Lalvin QA23]
          Length = 362

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 124 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +    V  +N+  +    
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 243 HLGRFVIWTEAAFTKLDQVW 262


>gi|297722605|ref|NP_001173666.1| Os03g0796501 [Oryza sativa Japonica Group]
 gi|31126753|gb|AAP44673.1| putative 60S ribosomal protein L1 [Oryza sativa Japonica Group]
 gi|50400025|gb|AAT76413.1| putative 60S ribosomal protein L1 [Oryza sativa Japonica Group]
 gi|222625961|gb|EEE60093.1| hypothetical protein OsJ_12950 [Oryza sativa Japonica Group]
 gi|255674964|dbj|BAH92394.1| Os03g0796501 [Oryza sativa Japonica Group]
          Length = 404

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 76/241 (31%), Gaps = 55/241 (22%)

Query: 21  EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQKGTGR 72
             +     +  ++    +  S  +R        +  +  +E   TG    ++    G G 
Sbjct: 28  PQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGT 87

Query: 73  ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123
            R    +      GG+ F P          +  ++R +A+  AL+            + I
Sbjct: 88  HRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRI 147

Query: 124 --------MVIDNLVS------------------KECKTKYLVT--------RFRALDLS 149
                   +V D++ S                     KTK  V         R R     
Sbjct: 148 EGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINR 207

Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDR 205
              +I           A RN+P +++  V+ +N+ D+         ++ ++ A + L++ 
Sbjct: 208 KGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEV 267

Query: 206 F 206
           +
Sbjct: 268 Y 268


>gi|209730670|gb|ACI66204.1| 60S ribosomal protein L4-A [Salmo salar]
 gi|221222354|gb|ACM09838.1| 60S ribosomal protein L4-A [Salmo salar]
          Length = 210

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 24/166 (14%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +S+ +  GE  G   V   +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISIYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRA 145
                     +S      +I    +V+D+ V    KTK  V   + 
Sbjct: 128 LAASALPALVMSKGHRIEEIPEVPLVVDDKVEGYKKTKEAVLLLKK 173


>gi|6319505|ref|NP_009587.1| Rpl4ap [Saccharomyces cerevisiae S288c]
 gi|585880|sp|P10664|RL4A_YEAST RecName: Full=60S ribosomal protein L4-A; AltName: Full=L2;
           AltName: Full=RP2; AltName: Full=YL2
 gi|313103740|pdb|3IZC|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
 gi|315113348|pdb|3IZS|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
 gi|315113529|pdb|3O58|D Chain D, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
           Of The First 80s In The Asymmetric Unit.
 gi|315113574|pdb|3O5H|D Chain D, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
           Of The Second 80s In The Asymmetric Unit.
 gi|498759|emb|CAA53687.1| ribosomal protein L2B [Saccharomyces cerevisiae]
 gi|536244|emb|CAA84973.1| RPL2A [Saccharomyces cerevisiae]
 gi|151946423|gb|EDN64645.1| ribosomal protein L4A [Saccharomyces cerevisiae YJM789]
 gi|256269011|gb|EEU04353.1| Rpl4ap [Saccharomyces cerevisiae JAY291]
 gi|285810367|tpg|DAA07152.1| TPA: Rpl4ap [Saccharomyces cerevisiae S288c]
 gi|290878048|emb|CBK39107.1| Rpl4ap [Saccharomyces cerevisiae EC1118]
 gi|323305579|gb|EGA59320.1| Rpl4bp [Saccharomyces cerevisiae FostersB]
 gi|323306083|gb|EGA59817.1| Rpl4ap [Saccharomyces cerevisiae FostersB]
 gi|323334261|gb|EGA75643.1| Rpl4bp [Saccharomyces cerevisiae AWRI796]
 gi|323334523|gb|EGA75897.1| Rpl4ap [Saccharomyces cerevisiae AWRI796]
 gi|323338370|gb|EGA79597.1| Rpl4ap [Saccharomyces cerevisiae Vin13]
 gi|323349673|gb|EGA83888.1| Rpl4ap [Saccharomyces cerevisiae Lalvin QA23]
 gi|323356302|gb|EGA88106.1| Rpl4ap [Saccharomyces cerevisiae VL3]
 gi|1587588|prf||2206497L ribosomal protein L2B
          Length = 362

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 124 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +    V  +N+  +    
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 243 HLGRFVIWTEAAFTKLDQVW 262


>gi|6320215|ref|NP_010295.1| Rpl4bp [Saccharomyces cerevisiae S288c]
 gi|1350714|sp|P49626|RL4B_YEAST RecName: Full=60S ribosomal protein L4-B; AltName: Full=L2;
           AltName: Full=RP2; AltName: Full=YL2
 gi|270346345|pdb|2WW9|H Chain H, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
           To The Yeast 80s Ribosome
 gi|270346360|pdb|2WWA|H Chain H, Cryo-Em Structures Of Idle Yeast Ssh1 Complex Bound To The
           Yeast 80s Ribosome
 gi|270346375|pdb|2WWB|H Chain H, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To
           The Actively Translating Wheat Germ 80s Ribosome
 gi|642817|emb|CAA88072.1| Rlp2bp [Saccharomyces cerevisiae]
 gi|1216219|emb|CAA65204.1| 60S ribosomal protein [Saccharomyces cerevisiae]
 gi|1431432|emb|CAA98832.1| RPL4B [Saccharomyces cerevisiae]
 gi|45271030|gb|AAS56896.1| YDR012W [Saccharomyces cerevisiae]
 gi|151942001|gb|EDN60357.1| ribosomal protein L4B [Saccharomyces cerevisiae YJM789]
 gi|190405011|gb|EDV08278.1| ribosomal protein L4B [Saccharomyces cerevisiae RM11-1a]
 gi|259145256|emb|CAY78520.1| Rpl4bp [Saccharomyces cerevisiae EC1118]
 gi|285811034|tpg|DAA11858.1| TPA: Rpl4bp [Saccharomyces cerevisiae S288c]
          Length = 362

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 124 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +    V  +N+  +    
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 243 HLGRFVIWTEAAFTKLDQVW 262


>gi|323355793|gb|EGA87607.1| Rpl4bp [Saccharomyces cerevisiae VL3]
          Length = 362

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 74/260 (28%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 124 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +    V  +N+  +    
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 243 HLGRFVIWTEAAFTKLDQVW 262


>gi|320101367|ref|YP_004176959.1| 50S ribosomal protein L4P [Desulfurococcus mucosus DSM 2162]
 gi|319753719|gb|ADV65477.1| LSU ribosomal protein L4P [Desulfurococcus mucosus DSM 2162]
          Length = 272

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 83/256 (32%), Gaps = 54/256 (21%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +++V  +DG   G + + E +F +  +  ++ R                  +  +  ++ 
Sbjct: 16  KVNVYGVDGNVIGEVELPE-VFNVPIRVDLVRRAFHSAFTGMLQPKGRDPLAGKRTTAKY 74

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSD 116
              G  +            ++ V   R G  AF P P       + +K R +A+  AL+ 
Sbjct: 75  WGVGYGIARVPRLPNGT--ARFVVSTRKGHAAFPPTPWERIREEVNRKERVMAIVSALAA 132

Query: 117 KFCSND--------------IMVIDNLVSKECKTKYLVTRFRALDLS------------- 149
               +               ++V D++ S   K          + L              
Sbjct: 133 TSRVDMVRRRGHVFSVERLPVVVSDDVESAISKASQAREYLEKIGLWSDVERSREGTGIR 192

Query: 150 --------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSK 191
                          +++      +     A RN+P +++     ++V  +    +    
Sbjct: 193 AGRGKMRGRAYVEPRSILFVLSSYESPLARAVRNLPGVDVSTPGNLSVLHLAPGGVPGRL 252

Query: 192 LVLSKSAIEALEDRFK 207
           +V+S+ A+E +  +++
Sbjct: 253 MVISRRALEEVASKYR 268


>gi|14595075|emb|CAC43331.1| putative ribosomal protein L4 [Oncorhynchus mykiss]
          Length = 134

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +S+ +  GE  G   V   +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISIYSEKGESSGKNVVMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINTTQKRYAICSA 127

Query: 114 L 114
           L
Sbjct: 128 L 128


>gi|312285778|gb|ADQ64579.1| hypothetical protein [Bactrocera oleae]
          Length = 244

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 70/236 (29%), Gaps = 54/236 (22%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +   E     ++    +F    +  I+  V +      R        +  +  +E 
Sbjct: 10  VSVYSDKNEQLKDKNICLPAVFKAPIRPDIVNEVHQLVRRNNRQPYAVSEQAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
           A+          S     + +    +V+ + V K  KTK  V   R   +   +      
Sbjct: 130 AIAASGVPALVQSKGHIIDGVSEFPLVVSDDVQKLQKTKQAVVFLRRTKIWADIQKVYKS 189

Query: 159 --------------------------LDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                      D   + A RNIP I  + V  +N   +L+
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLIVYYKDEGLRRAFRNIPGIETMNVDKMN---LLK 242


>gi|212535050|ref|XP_002147681.1| 60S ribosomal protein L4, putative [Penicillium marneffei ATCC
           18224]
 gi|210070080|gb|EEA24170.1| 60S ribosomal protein L4, putative [Penicillium marneffei ATCC
           18224]
          Length = 372

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 81/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   +G+  G       +F+   +  I+ +V    +  KR   + S     +  +E
Sbjct: 5   PTVTIATAEGKPSGATYPLPTVFSSPIRPDIVQKVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  R  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNQGQRRFATA 124

Query: 112 HALSDK-------FCSNDI-------MVIDNLVSKEC----------------------- 134
            AL+            + +       +V+++   +                         
Sbjct: 125 SALAASSVPSLLFARGHRVASVPEVPLVVESKTFENAAIAKTKAAIALLKAVGAGPDLVK 184

Query: 135 -----KTKYLVTRFRALDLSNAL---IIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                KT+    + R           ++   + D +    A RNIP +    V  +N+  
Sbjct: 185 VQKSRKTRAGKGKMRGRRFRQRRGPLVVYNPETDGKELVKAFRNIPGVETSSVYALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + +A  AL++ +
Sbjct: 245 LAPGGHLGRFIVWTSAAFAALDEVY 269


>gi|183231989|ref|XP_001913650.1| 60S ribosomal protein L4 [Entamoeba histolytica HM-1:IMSS]
 gi|169802255|gb|EDS89578.1| 60S ribosomal protein L4, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 431

 Score = 75.9 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 82/256 (32%), Gaps = 57/256 (22%)

Query: 4   LSVRN-LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG----CSKSKGRSEVA 58
           +++ + + GE +        +F    +  ++  V R QS   R          K  S ++
Sbjct: 7   VTIYDGITGEAEKTPVRLPAVFLAPIRGDVVHFVYRNQSKNTRQPEGVSTEAGKQHSAIS 66

Query: 59  YTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
           +      +++    G+G  R+   +       G  F P+          PK++R  A+  
Sbjct: 67  WGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKTPKQMRRFAVAS 126

Query: 113 ALSDKF---------------CSNDIMVIDNLVSKECKTKYLVTRFRALDLS-------- 149
            ++                      ++V    +S   KTK  V   + ++          
Sbjct: 127 CIAASAVPALVSARGHHIAGVPQIPLVVNSKSISVIKKTKQAVYLLKKINAYSDVLKVIA 186

Query: 150 -------------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++     D     A RNIP ++   V+ ++V ++    
Sbjct: 187 SKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVLNLAPGC 246

Query: 189 --CSKLVLSKSAIEAL 202
                ++ ++SA + L
Sbjct: 247 HMGRFIIWTESAFKKL 262


>gi|119183063|ref|XP_001242607.1| hypothetical protein CIMG_06503 [Coccidioides immitis RS]
 gi|303319587|ref|XP_003069793.1| 60S ribosomal protein L4-A, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240109479|gb|EER27648.1| 60S ribosomal protein L4-A, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|320040732|gb|EFW22665.1| 60S ribosomal protein L4-A [Coccidioides posadasii str. Silveira]
          Length = 372

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   DG+  G       +F    +  I+  V    +  +R   + S     +  +E
Sbjct: 5   PTVTIATADGKPSGATHPLPTVFTAPIRPDIVQSVHTGIAKNRRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATA 124

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSK---ECKTKYLVTRFR---------- 144
                        +     ++I    +V+D+   +     KTK  +   +          
Sbjct: 125 SALAASSVPSLLFARGHRVSNIPEVPLVVDSKTFENGAITKTKAAIALLQSLGAGPDLVK 184

Query: 145 ------------------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                                    L++   ++D +    A RN+P +    V  +N+  
Sbjct: 185 VQKSRKMRAGKGKLRGRRYRQRRGPLVVYNPEVDGKELVKAFRNVPGVETSSVFNLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + SA  AL+  +
Sbjct: 245 LAPGGHLGRFIVWTSSAFAALDQIY 269


>gi|254564519|ref|XP_002489370.1| Protein component of the large (60S) ribosomal subunit, nearly
           identical to Rpl4Ap [Pichia pastoris GS115]
 gi|238029166|emb|CAY67086.1| Protein component of the large (60S) ribosomal subunit, nearly
           identical to Rpl4Ap [Pichia pastoris GS115]
 gi|328349799|emb|CCA36199.1| 60S ribosomal protein L4-B [Pichia pastoris CBS 7435]
          Length = 339

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 78/261 (29%), Gaps = 58/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55
            +++V +++G+     S+    +F    +  I+  V    +  KR   +       +  +
Sbjct: 5   PQVTVISVEGKPSST-SLPLPAVFKAPIRGDIVQSVFTRINKNKRQAYAVSEKAGHQTSA 63

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +      GG+ F P          +    +  A 
Sbjct: 64  ESWGTGRAVARIPRVGGGGTHRSGQGAFGNMCRGGRMFAPTKIWRKWHVRVNLNEKRYAT 123

Query: 111 R-------HALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFR------------ 144
                            + I       +V+ N +    KTK  +   +            
Sbjct: 124 ASAIAATSVQSLVLARGHRIEQIAEIPLVVSNDLEAIQKTKDAIAALKALGASDDLIRVI 183

Query: 145 ---------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR- 188
                                  +I   + D+    A RNIP +    V+ + +  +   
Sbjct: 184 KSKKLRAGKGKYRNRRFTQRRGPLIVFNE-DKGLVKALRNIPGVETCNVRTLGLLQLAPG 242

Query: 189 ---CSKLVLSKSAIEALEDRF 206
                 ++ ++SA  AL+  +
Sbjct: 243 AHLGRFVIWTESAFAALDSVY 263


>gi|224000902|ref|XP_002290123.1| RL4e, ribosomal protein 4e 60S large ribosomal subunit
           [Thalassiosira pseudonana CCMP1335]
 gi|220973545|gb|EED91875.1| RL4e, ribosomal protein 4e 60S large ribosomal subunit
           [Thalassiosira pseudonana CCMP1335]
          Length = 378

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 76/257 (29%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSK-GRSEVA 58
           +SV +L GE  G  ++ E +     +  I+  V    +   R          K   +E  
Sbjct: 7   VSVFSLTGEKAGETTLPE-VMTAPMRTDIVQFVHTNMNKNNRQAYAVNVHAGKLVSAESW 65

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL----- 108
            TG    ++    G G +R    +      GG+ F P          +    +       
Sbjct: 66  GTGRAVARIPRVGGGGTSRSGQGAFGNMCRGGRMFAPTKTWRKWHRKINVTQKRYAVASA 125

Query: 109 -------ALRHALSDKFCSNDIM--VIDNLVSKECKTKYLVTRF---------------- 143
                  AL  A   K      +  V+DN +    KT                       
Sbjct: 126 LAATAVPALVMARGHKVDDVPEIPLVLDNTLESAKKTSAAKDILAAVGALADVEKAADSK 185

Query: 144 ----------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               +   + +   + A RN+P + L  V  +N+  +     + 
Sbjct: 186 KIRAGKGKARNRRYTLRRGPLVIYKSNDGVEQAFRNLPGVELCCVDRLNLLQLAPGGHMG 245

Query: 193 ---VLSKSAIEALEDRF 206
              + S++A++AL   +
Sbjct: 246 RFCIWSQAALDALNTIY 262


>gi|88603498|ref|YP_503676.1| 50S ribosomal protein L4P [Methanospirillum hungatei JF-1]
 gi|109893603|sp|Q2FU92|RL4_METHJ RecName: Full=50S ribosomal protein L4P
 gi|88188960|gb|ABD41957.1| LSU ribosomal protein L4P [Methanospirillum hungatei JF-1]
          Length = 249

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 80/250 (32%), Gaps = 54/250 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           ++  V  L G     I +   +F+ + +  ++ + +  Q  R+         +     + 
Sbjct: 1   MKAQVLTLTGSVAHEIELPP-VFSSEFRPDLIKKAVIAQQSRRYQPHGAYVYAGITASAV 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-----IIGVHALPKKVRSLALR 111
              +G  +        +  ++  V Q +GG +A  P               +K  + A+ 
Sbjct: 60  GWGSGRGVSHVPRLKNSSRAA-KVPQAKGGREAHPPKVEKVLIRNINQKEKRKALNSAIA 118

Query: 112 HALSDKFCSNDIMVI--------DNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163
             +S +   +   V                 KTK ++   RA+ +     ++  +  R  
Sbjct: 119 ATISPELVRSRGHVFTGSLPYVLSGDFESLKKTKEVIAALRAVGVYGD--VERAERSRKV 176

Query: 164 Q--------------------------LAARNIPNINLLPVQGINVYDIL-----RCSKL 192
           +                           AARN+  +++  V  +NV ++L          
Sbjct: 177 RAGRGKLRGRRYKQRKSLLIVTGKERLRAARNLAGVDVCLVDNLNV-ELLAPGTHSARLT 235

Query: 193 VLSKSAIEAL 202
           + ++ A+  L
Sbjct: 236 LWTEDAVRKL 245


>gi|77024939|gb|ABA61366.1| ribosomal protein L4 [uncultured marine group II euryarchaeote
           HF70_59C08]
          Length = 287

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 79/265 (29%), Gaps = 70/265 (26%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSK------------SKGR 54
            +++  D   +++    F  + +  ++ R +      +R                  K  
Sbjct: 25  YSIEASDGKNVNLPSA-FGSEFRPDLIRRAVHASRANRRQSYGHREHGGKRAPQPGMKHS 83

Query: 55  SEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113
            E    G  +        AR  +      RGG +A GP+        L  K  + A   A
Sbjct: 84  VEWWGKGRGVSRIMRKSGARTGA-QNPHTRGGRRAHGPMVLKDWSQKLNSKEANAARDSA 142

Query: 114 LSDKFCSNDI--------------MVIDNLVSK-----------ECKTKYLVTRFRALDL 148
           ++    S  +              +V+                 E  TK  +    ++ L
Sbjct: 143 IAATADSEKVAARGHKFSDSVRFPIVLGGYSEDGENFDIESLPLEKATKKFIAMMESIGL 202

Query: 149 SNALIIDGCQLD--------------------------RNFQLAARNIPNINLLPVQGIN 182
            + L       +                               AARN+P ++++  + + 
Sbjct: 203 GDDLTRANDGRNIRAGKGKMRGRRRRTPRSILLVVAQRDALAKAARNVPGVDVVVAKDLC 262

Query: 183 VYDIL---RCSKL-VLSKSAIEALE 203
             D+       +L V +K+AIEALE
Sbjct: 263 AEDLAPGGDAGRLTVWTKAAIEALE 287


>gi|254168596|ref|ZP_04875439.1| ribosomal protein L4/L1 family [Aciduliprofundum boonei T469]
 gi|197622430|gb|EDY35002.1| ribosomal protein L4/L1 family [Aciduliprofundum boonei T469]
          Length = 254

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 77/251 (30%), Gaps = 52/251 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSE 56
           + ++V  + GE K  I++   +F    +  ++   +R     +         +  +  +E
Sbjct: 1   MRVNVYTIGGEVKRQITLP-KVFNYPYRPDLIKEAVRIFQLNRVQPHGVSPTAGMRRVAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALS 115
               G  +               +    GG     P    +    +  K+R LA   ALS
Sbjct: 60  SWGPGHGISKMVPRVGHTSRGAIIPSTVGGRAGHPPTTQKVWKRKMNIKMRRLAKYSALS 119

Query: 116 DKFCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC---- 157
                  +              +V+++        K  +   + L +   +I        
Sbjct: 120 MTSNKVMVAKRGHKFSPDITLPVVVEDEFENISTVKEAIRVLQNLGIYEDIIRASEKRIR 179

Query: 158 ---------------------QLDRNFQLAARNIPNINLLPVQGINVYDIL----RCSKL 192
                                    N     RN+P ++++  + +N  ++L       +L
Sbjct: 180 GGKGKRRGRRYKKKKSVLIVVSNKDNVLKGFRNLPGVDIVTPRELNA-EVLAPGTHAGRL 238

Query: 193 -VLSKSAIEAL 202
            + ++SAI+ +
Sbjct: 239 AIFTESAIKEI 249


>gi|313616907|gb|EFR89559.1| 50S ribosomal protein L4 [Listeria innocua FSL S4-378]
          Length = 75

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 40/74 (54%)

Query: 133 ECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
             KTK      + + +    +I       N +L+ARN+  I ++P + I+V ++ +  KL
Sbjct: 1   APKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESISVLEVAKHDKL 60

Query: 193 VLSKSAIEALEDRF 206
           +++K+A+E +E+  
Sbjct: 61  IITKAAVEKVEEVL 74


>gi|255089284|ref|XP_002506564.1| predicted protein [Micromonas sp. RCC299]
 gi|226521836|gb|ACO67822.1| predicted protein [Micromonas sp. RCC299]
          Length = 395

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 71/248 (28%), Gaps = 55/248 (22%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KM 64
               + + E +F    +  I+  V    +   R   + +K       +E   TG    ++
Sbjct: 13  SADTVQLPE-VFLSPIRPDIVNAVHTGLNKNNRQAYAVNKRAGHQTAAESWGTGRAVSRI 71

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSND 122
               G G  R    +      GG+ F P          +  K +  A+  AL+     + 
Sbjct: 72  PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRRVNLKQKRYAVCSALAASAVPSL 131

Query: 123 IM--------------VIDNLVSKECKTKYLVTRF------------------------- 143
           +M              V+D+      KT   V                            
Sbjct: 132 LMARGHHVESVPEVPLVLDDSSEAITKTAKAVKLLQEVGAYADVEKVKASRNLRSGKGKM 191

Query: 144 -RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSA 198
                +     +     D     A RNIP + L  V  + +  +     +    + +KSA
Sbjct: 192 RNRRYVQRKGPLVVYANDSGITKAMRNIPGVELCSVDRLGLLTLAPGGHVGRFIIWTKSA 251

Query: 199 IEALEDRF 206
            E L+  +
Sbjct: 252 FEKLDSIY 259


>gi|17508669|ref|NP_491416.1| Ribosomal Protein, Large subunit family member (rpl-4)
           [Caenorhabditis elegans]
 gi|3914700|sp|O02056|RL4_CAEEL RecName: Full=60S ribosomal protein L4
 gi|1947110|gb|AAC24253.1| Ribosomal protein, large subunit protein 4, confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 345

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 73/253 (28%), Gaps = 54/253 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRS-EVA 58
           ++V +   E          +F    +  +++ +       +R   +      K  S E  
Sbjct: 7   VTVYDEKYEATQSQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALS 115
            TG    ++   +G G  R    +      GG  F P+ +         +       + +
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126

Query: 116 DKFC----------------SNDIMVIDNLVSKECKTKYLVTRFRALDLS---------- 149
                               +   +V+ + V    KTK  V   R   L           
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSK 186

Query: 150 ----------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               +     D     A RNIP ++++ V+ +N+  +     L 
Sbjct: 187 RNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLG 246

Query: 193 ---VLSKSAIEAL 202
              + ++SA + L
Sbjct: 247 RLIIWTESAFKKL 259


>gi|326488173|dbj|BAJ89925.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 404

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 55/241 (22%)

Query: 21  EDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEVAYTGS---KMYVQKGTGR 72
             +     +  ++  V R  S   R   +       +  +E   TG    ++    G G 
Sbjct: 28  PHVMTAPIRPDVITFVHRLVSCNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVGGGGT 87

Query: 73  ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDK-------FCSNDI 123
            R    +      GG+ F P          +  ++R +A+  AL+            + I
Sbjct: 88  HRAGQGAFGNMCRGGRMFAPTRIWRKWHRRVNIRLRRVAVASALAATAVPAIVTARGHRI 147

Query: 124 -------MVIDNLVSKECKTKYLVTRF---------------------------RALDLS 149
                  +V+ +      KT   +                              R     
Sbjct: 148 EGVPEFPLVVSDSAEGIEKTSQAIKVLEQLGAFADAEKAKESVGIRPGKGKMRNRRYINR 207

Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDR 205
              +I           A RN+P +++  V+ +N+ D+         ++ ++SA + L++ 
Sbjct: 208 KGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLDEV 267

Query: 206 F 206
           +
Sbjct: 268 Y 268


>gi|22203722|gb|AAM94273.1| ribosomal protein L4 [Chlamys farreri]
          Length = 206

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 28/173 (16%)

Query: 4   LSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57
           +SV +  GE  G  +++   +F    +  I++ V        R   + SK       +E 
Sbjct: 7   ISVYDNKGEGTGVNVTLP-SVFRAPIRPDIVSFVHSEMRKNSRQPYAVSKYAGHQTSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 66  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRININQRRYALCS 125

Query: 113 ----------ALSDKFCSND-----IMVIDNLVSKECKTKYLVTRFRALDLSN 150
                      +S      +     ++V D  V +  KTK  V+  + L   N
Sbjct: 126 AIAATGIPALVMSKGHRIEETQEVPLVVCDK-VQEFKKTKEAVSSSKTLQAWN 177


>gi|269862132|ref|XP_002650717.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220065724|gb|EED43339.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 319

 Score = 75.5 bits (184), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 54/256 (21%)

Query: 1   MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           M+ ++V   DG+   G I+    +F ++ +  ++ +     +   R        +  +  
Sbjct: 1   MMNVNVYGKDGKTVVGEIA-KPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59

Query: 55  SEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH---------ALP 102
           +E   TG  +      KG+G  R    + + F   G+   P                 L 
Sbjct: 60  AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119

Query: 103 KKVRSLALRHALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
             +   A  HA   +   + I       +V+ + +S   KT+      + ++L   L   
Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179

Query: 156 GCQL------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A  NI  + L  V  +N+  +     
Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHDNAALSAFSNIEGVELANVNSLNLLRLCPGGH 239

Query: 192 L----VLSKSAIEALE 203
           L    + ++SA + LE
Sbjct: 240 LGRLILWTESAFKKLE 255


>gi|241957177|ref|XP_002421308.1| 60S ribosomal (large subunit) protein, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223644652|emb|CAX40642.1| 60S ribosomal (large subunit) protein, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 272

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 87/217 (40%), Gaps = 26/217 (11%)

Query: 12  EDKGVISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           E K  I +  + F  +   ++ IL   + +++ + R+G +    +S+  Y+  K+  QKG
Sbjct: 50  EPKTFIPLPTNFFNTEKPIRRDILWSCVTYEADKARVGSNYVILKSDSPYSNRKLRPQKG 109

Query: 70  TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDI-MVID 127
           +GRAR    +        KA     P      LP K+ S  +++A +  +   ++ +V +
Sbjct: 110 SGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNIVEN 169

Query: 128 NLVSK---ECKTKYLVTRFRALDLSNALIIDGCQLD-------------RNFQLAARNIP 171
            L  +   +  T+  V+      L+   I +  + +                 L  +  P
Sbjct: 170 ELNFQYGYDIITQSFVSIHNLNKLNLLFITNEPRDNLMESIKQFYINDKEFNSLNKKEKP 229

Query: 172 NI------NLLPVQGINVYDILRCSKLVLSKSAIEAL 202
                    +L  + + V DILR  ++ +  SA++  
Sbjct: 230 KYLQKLKGKVLTKEDVEVRDILRAHRVFIESSALQWF 266


>gi|194376602|dbj|BAG57447.1| unnamed protein product [Homo sapiens]
          Length = 227

 Score = 75.1 bits (183), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 63/220 (28%), Gaps = 52/220 (23%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGETSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      ++    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPN 172
                                      D     A RNIP 
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPG 226


>gi|328866159|gb|EGG14545.1| 60S ribosomal protein L4 [Dictyostelium fasciculatum]
          Length = 369

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 77/259 (29%), Gaps = 58/259 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEVA 58
           ++V N + +    +     +     +  ++  V    +   R        +  +  +E  
Sbjct: 6   VNVFNGENKTAAKVKFP-AVLGTPIRPDLVNFVHTNVNKNHRQAYGVYKYAGEQTSAESW 64

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++    G+G  R    +      GG+ FGP          +    +  A+  A
Sbjct: 65  GTGRAVARIPRVGGSGTHRSGQGAFGNMCRGGRMFGPNKVWRKWNRRVNVNQKRYAVCSA 124

Query: 114 LS---------------DKFCSNDIMVIDNLVSKECKTKYLVTRFR-------------- 144
           L+               ++     +++ + +++   KT       +              
Sbjct: 125 LAASAIPALVMARGHRVNQISEVPLVIANEVLANLTKTSAATALLKKINAYADVERVIAS 184

Query: 145 -------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                ++      +    A RNIP +++  V  +N+  +     
Sbjct: 185 KSVRAGQGKLRNRRFQSRRGPLLVLAGPSKCV-RAFRNIPGVDIAFVSSLNILRLAPGGH 243

Query: 192 ----LVLSKSAIEALEDRF 206
               ++ S+ A E L+  F
Sbjct: 244 LGRFVIWSQDAFEQLDKIF 262


>gi|2425177|dbj|BAA22271.1| ribosomal protein L4 [Halobacterium salinarum]
          Length = 248

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 56/254 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           ++++VR+LDG+D G + +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MQVTVRDLDGDDAGTLDLP-RVFETNVRPDLVNRAVLAAQANRTQEYGADEYAGLRTTAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKA-FGPVPIIGVH-ALPKKVRSLALRHA- 113
              +G  M         +      +    GG+    P         +  K R LA+R A 
Sbjct: 60  SQGSGRGMAHVPK----QTGRVRRAPDSFGGRKAHPPKAEKDRSLDVNDKERQLAVRSAL 115

Query: 114 ------LSDKFCSND--------IMVIDNLVSKECKTKYLVTR----------------- 142
                  S+    ++        ++V D+      KT+ +V+                  
Sbjct: 116 LATADHDSELARGHNFDDDVEFPLVVSDDFE-DLVKTQDVVSLLEALGVHADIERADEAA 174

Query: 143 --------FRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL--RCSKL 192
                    R         I       +    ARN+  +++   + +N  D+      +L
Sbjct: 175 TVRAGQGELRGRKYQEPTSILFVTASESGPSTARNLAGVDVASGREVNAEDLAPGEPGRL 234

Query: 193 -VLSKSAIEALEDR 205
            V ++SA+E +  R
Sbjct: 235 TVWTESAVEEVAQR 248


>gi|193083755|gb|ACF09442.1| ribosomal protein L4 [uncultured marine group II euryarchaeote
           SAT1000-15-B12]
          Length = 292

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 77/265 (29%), Gaps = 75/265 (28%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSK------------SKGRSEV 57
           DG+    +++ + +F+ + ++ I+   +      +R                  K   E 
Sbjct: 32  DGK---SVTLPD-VFSSEVREDIIRSAVLASRANRRQPYGHREHDGKRAPQPGMKHSVEW 87

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117
              G  +         R  +++     G       V       L  K R LA   A++  
Sbjct: 88  WGKGRGVSRIMRKTGQRTGAQNPHTRGGRRAHGPKVDKDWSQKLNSKQRRLARDSAIAAT 147

Query: 118 FCSNDI--------------MVIDNLVSK---------------ECKTKYLVTRFR---- 144
             +  +              +VID  V                 +  T+  V        
Sbjct: 148 VDTRMVAARGHRFDDDIRFPIVIDGYVESRNGSDEKYDVESLPLQYSTRKFVAMMEGLGL 207

Query: 145 ----------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
                                     +   I+           AARN+P ++++  + ++
Sbjct: 208 SADLERAKGGRNIRAGKGKMRGRRYRTPKSILVVVSNRDGLHKAARNVPGVDVVVAKDLS 267

Query: 183 VYDIL---RCSKL-VLSKSAIEALE 203
             D+       +L V +K+A+EALE
Sbjct: 268 AEDLAPGGDAGRLTVWTKAAVEALE 292


>gi|156094412|ref|XP_001613243.1| 60S ribosomal subunit protein L4/L1 [Plasmodium vivax SaI-1]
 gi|148802117|gb|EDL43516.1| 60S ribosomal subunit protein L4/L1, putative [Plasmodium vivax]
          Length = 411

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 83/262 (31%), Gaps = 62/262 (23%)

Query: 1   MIEL----SVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS---- 51
           M  +    +V +   +   G + +   +F    +  ++  V +  S  +R   +      
Sbjct: 1   MATVRPVANVYSTSNKQVVGEVEIP-VVFQTPIRSDLVQEVFKNVSKNRRHPYAVKLGAG 59

Query: 52  -KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105
            +  +E   TG    ++    G G  R    +      GG  F P          +  K 
Sbjct: 60  YETSAESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKVWRRWGRKVNLKE 119

Query: 106 RSLALRHALS-------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF-------- 143
           +  A+  +++            + I       +V+ N V    KTK  +           
Sbjct: 120 KRYAVCSSIAASGVTSLVLARGHRISNMKEVPLVVSNDVESISKTKEALKFLITLGLKEE 179

Query: 144 -------------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                              R   + N  +I   + D   + A RNIP ++L  V  +N+ 
Sbjct: 180 VNRLIKSKKIRAGKGKMRNRKYRMRNGPLIIYSK-DCGVKKAFRNIPGVDLCKVTKLNLM 238

Query: 185 DILRCSKL----VLSKSAIEAL 202
            +     +    + S+SA + L
Sbjct: 239 KLAPGGSIGRLCIWSESAFKKL 260


>gi|269863125|ref|XP_002651104.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220065118|gb|EED42952.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 319

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 54/256 (21%)

Query: 1   MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           M+ ++V   DG+   G I+    +F ++ +  ++ +     +   R        +  +  
Sbjct: 1   MMNVNVYGKDGKTVVGEIA-RPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59

Query: 55  SEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH---------ALP 102
           +E   TG  +      KG+G  R    + + F   G+   P                 L 
Sbjct: 60  AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119

Query: 103 KKVRSLALRHALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
             +   A  HA   +   + I       +V+ + +S   KT+      + ++L   L   
Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179

Query: 156 GCQL------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A  NI  + L  V  +N+  +     
Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHDNAALSAFSNIEGVELANVNSLNLLRLCPGGH 239

Query: 192 L----VLSKSAIEALE 203
           L    + ++SA + LE
Sbjct: 240 LGRLILWTESAFKKLE 255


>gi|297619638|ref|YP_003707743.1| 50S ribosomal protein L4P [Methanococcus voltae A3]
 gi|297378615|gb|ADI36770.1| 50S ribosomal protein L4P [Methanococcus voltae A3]
          Length = 253

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 90/256 (35%), Gaps = 55/256 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +   + NLDG +KG +++   +F+ + +  ++ R +      K         +  +  ++
Sbjct: 1   MNAKIFNLDGSEKGEVAIP-SVFSAEYRPDLIKRAVISSLTAKLQPKGSNLLAGHRTSAK 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
               G      + T  A+     V Q  GG +A GP    I +  + +K R  AL+ A++
Sbjct: 60  SIGKGHGRARVRRT--AQGGGAFVPQAVGGRRAHGPKVEKILLERINRKERLKALQSAIA 117

Query: 116 DKFCSNDIMVIDNLVSKEC--------------KTKYLVTRFR----------------- 144
                  +    +++                  KTK  +  F+                 
Sbjct: 118 ASANVEIVKARGHIIPDVPALPLIVSEEFESIVKTKDALDVFKALKLDADLTRAKEGISI 177

Query: 145 ----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191
                           ++++   +       A++NI  ++++    +    I       +
Sbjct: 178 KAGKGKLRGRKYKKPRSVLVVVSKACDAV-KASKNIAGVDVITADDLGTMHIAPGTAAGR 236

Query: 192 L-VLSKSAIEALEDRF 206
           L + ++ AIEAL ++F
Sbjct: 237 LTLWTEGAIEALREKF 252


>gi|242791918|ref|XP_002481852.1| 60S ribosomal protein L4, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218718440|gb|EED17860.1| 60S ribosomal protein L4, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 372

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 80/265 (30%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   +G+  G       +F+   +  I+ +V    +  KR   + S     +  +E
Sbjct: 5   PTVTIATAEGKPSGATHPLPTVFSSPIRPDIVQKVHTGIAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  R  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNQGQRRFATA 124

Query: 112 HALSDKFCSNDIM--------VIDNLVSKECKT--------------------------- 136
            AL+     + +         V +  +  E KT                           
Sbjct: 125 SALAASSVPSLLFARGHRVANVPEVPLVVESKTFENAAVAKTKAAVALLKAVGAGPDLVK 184

Query: 137 ----------KYLVTRFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                     K  +   R       L++   + D +    A RNIP +    V  +N+  
Sbjct: 185 VQKSRKSRAGKGKMRGRRFRQRRGPLVVYNPETDGKELVKAFRNIPGVETSSVYALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + SA  AL++ +
Sbjct: 245 LAPGGHLGRFIVWTSSAFAALDEVY 269


>gi|47079405|gb|AAT10148.1| ribosomal protein L4 [uncultured marine group II euryarchaeote
           DeepAnt-JyKC7]
          Length = 304

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 83/269 (30%), Gaps = 74/269 (27%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC------------SKSKGR 54
             ++ ++   +++ + +F+ + ++ ++ R +      +R               +  K  
Sbjct: 38  YTVEAKNGKAVTLPD-VFSGEIREDLIRRAVLASRANRRQSYGHREHDGKRKPQAGMKHS 96

Query: 55  SEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHA 113
            E    G  +         + ++      RGG +A GP         +  K   +A   A
Sbjct: 97  VEWWGKGRGVSRIMR-KAGQRTAAQNPHTRGGRRAHGPKVDKDWSQKINSKENRIARDSA 155

Query: 114 LSDKFCSNDI--------------MVIDNLVSK---------------ECKTKYLVTRFR 144
           ++    SN +              ++ID  V                 +  T+  V    
Sbjct: 156 IAASASSNLVSERGHHFEASLRFPIIIDGYVESREGGDEKYDLESLPLQYSTRKFVAMME 215

Query: 145 --------------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
                                         +   I+           AARNIP ++++  
Sbjct: 216 GLGLGADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTNGLAKAARNIPGVDIVVA 275

Query: 179 QGINVYDIL---RCSKL-VLSKSAIEALE 203
           + ++  D+       +L V +K+AI ALE
Sbjct: 276 KDLSAEDLAPGGDAGRLTVWTKAAIGALE 304


>gi|269862283|ref|XP_002650777.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220065632|gb|EED43278.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 319

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 81/256 (31%), Gaps = 54/256 (21%)

Query: 1   MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           M+ ++V   DG+   G I+    +F ++ +  ++ +     +   R        +  +  
Sbjct: 1   MMNVNVYGKDGKTVVGEIA-RPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59

Query: 55  SEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH---------ALP 102
           +E   TG  +      KG+G  R    + + F   G+   P                 L 
Sbjct: 60  AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119

Query: 103 KKVRSLALRHALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
             +   A  HA   +   + I       +V+ + +S   KT+      + ++L   L   
Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179

Query: 156 GCQL------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A  NI  + L  V  +N+  +     
Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHDNAALSAFSNIEGVELANVNSLNLLRLCPGGH 239

Query: 192 L----VLSKSAIEALE 203
           L    + ++SA + LE
Sbjct: 240 LGRLILWTESAFKKLE 255


>gi|323309497|gb|EGA62708.1| Rpl4bp [Saccharomyces cerevisiae FostersO]
          Length = 362

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 73/260 (28%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V  L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHXLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 124 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-- 188
                                 ++   + D     A RN+P +    V  +N+  +    
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVETANVASLNLLQLAPGA 242

Query: 189 --CSKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 243 HLGRFVIWTEAAFTKLDQVW 262


>gi|219121527|ref|XP_002181116.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407102|gb|EEC47039.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 397

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 77/253 (30%), Gaps = 55/253 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS----KSKGRSEVAY 59
           +SV +L G+  G +S+   +     +  I+  V    +   R   +      K     ++
Sbjct: 32  VSVFSLSGDKSGDVSLP-AVMTAPLRPDIVQFVHTNMNKNHRQAYAVNIRAGKQVVASSW 90

Query: 60  TG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
                 +++    G G +R    +      GG+ F P          +    +  A+   
Sbjct: 91  GTGRAVARIPRVGGGGTSRSGQGAFGNMCRGGRMFDPTKTWRKWNKKINISQKRYAVASA 150

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRF---------------- 143
                     +S     +++    +V++N V    KT                       
Sbjct: 151 LAATAVPALVMSRGHVVDNVPEIPLVVENAVESAKKTSAAKDILSAIGALDDVEKAGESK 210

Query: 144 ----------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                               +   + +   + A RN+P + L  V  +N+  +     + 
Sbjct: 211 QIRAGKGKMRNRRYTLRRGPLVIYKSNDGVEQAFRNLPGVELCCVDRLNLLQLAPGGHMG 270

Query: 193 ---VLSKSAIEAL 202
              + S++A+E L
Sbjct: 271 RFCIWSQAALEEL 283


>gi|188572407|gb|ACD65110.1| putative 60S ribosomal protein RPL4 [Novocrania anomala]
          Length = 179

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 49/171 (28%), Gaps = 24/171 (14%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V +   E  G       +F    +  ++  V        R        +  +  +E  
Sbjct: 7   ITVYSEKAEPAGTTITLPAVFRAPIRPDVVNFVHTEIRKNSRQAYCVSKFAGHQTSAESW 66

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 67  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGRMFAPTKTWRRWHRKVNVNQKRYAICSA 126

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150
                     +S      +I    +VI + +    KTK  V   +      
Sbjct: 127 IAATAIPALVMSKGHRIEEIPEVPLVIADKIESYQKTKEAVGLLKRFKAWQ 177


>gi|166952269|gb|ABZ04217.1| ribosomal protein rpl4 [Lineus viridis]
          Length = 204

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           ++V +   E  G  I++   +F    +  I+  V        R        +  +  +E 
Sbjct: 7   ITVYSDKNETTGTNITLP-AVFRAPIRPDIVNFVHFEMLKNTRQPYAVSVQAGHQTSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  A+  
Sbjct: 66  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQRRYAMCS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS 149
                      +S      +     +V+ + V +  KTK  V+  +     
Sbjct: 126 AIAATGIPALVMSKGHRIEETPEIPLVVSDKVEEIKKTKEAVSFLKKFKAW 176


>gi|298712581|emb|CBJ33281.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 379

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 69/257 (26%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV + +G  +   ++   +F +  +  ++  V    +   R   + SK       +E  
Sbjct: 7   VSVFSKEGVAQESTTLP-AVFTVPIRPDVVNFVHTNMAKNHRQPYAVSKRAGHQTSAESW 65

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRH--- 112
            TG    ++   +G G  R    +      GG+ F P  I         V          
Sbjct: 66  GTGRAVSRIPRVQGGGTQRAGQGAFGNMCRGGRMFSPTKIWRRWHRNVNVNQKRYAVASA 125

Query: 113 --------------------------------ALSDKFCSNDIMVIDNLVSKECKTKYLV 140
                                             S    +   +      ++  K K   
Sbjct: 126 LAATAVPALVMARGHRVEEVPELPLVVDTSLETCSKTAAAMATLTALGAAAEVEKAKDSK 185

Query: 141 -------TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                         +     +           A RN+P +    V  +N+  +     + 
Sbjct: 186 KIRAGKGKMRNRRYVMRRGPLVIYDKSEGISRAFRNLPGVETACVDRLNLLTLAPGGHIG 245

Query: 193 ---VLSKSAIEALEDRF 206
              V +++A + L+  +
Sbjct: 246 RFCVWTQAAFDKLDSIY 262


>gi|149504951|ref|XP_001519357.1| PREDICTED: similar to ribosomal protein L4, partial
           [Ornithorhynchus anatinus]
          Length = 203

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 24/171 (14%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 29  ISVYSEKGEVSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 88

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 89  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 148

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150
                     +S      +I    +V+++ V    KTK  V   + L   N
Sbjct: 149 LAASALPALVMSKGHRIEEIPELPLVVEDKVEGYKKTKEAVLLLKKLKAWN 199


>gi|255731336|ref|XP_002550592.1| hypothetical protein CTRG_04890 [Candida tropicalis MYA-3404]
 gi|240131601|gb|EER31160.1| hypothetical protein CTRG_04890 [Candida tropicalis MYA-3404]
          Length = 266

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 26/217 (11%)

Query: 12  EDKGVISVSEDIFALK--PQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKG 69
           E    + +    F  +   ++ IL   + +++ + RIG +    +S+  Y+  K+  QKG
Sbjct: 43  EPTKFLPLPTTFFNTESPLRRDILWSSVVYEADKSRIGSNYVVLKSDSPYSNRKLRRQKG 102

Query: 70  TGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALSDKFCSNDIMV--- 125
           +G AR   ++        KA     P      LPKK+  L  ++A ++ +   ++ +   
Sbjct: 103 SGMARLGDRNSPHMDNEIKAHAIKGPHDWSTELPKKIYDLGFKNAFTNHYKLGNLNIIEN 162

Query: 126 -------IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF-------QLAARNIP 171
                   D +      T  L  +     + +  I     ++  F        L+ +  P
Sbjct: 163 DLNFKFNYDIITQMFISTHQLNGKNLLFIVDDERINLNNSINEFFTSQKKLNSLSKKEKP 222

Query: 172 NI------NLLPVQGINVYDILRCSKLVLSKSAIEAL 202
                    ++  + + V DILR  K+ +   A++  
Sbjct: 223 KYLSKLKGKVIKKEDVEVRDILRADKVFIELPALQWF 259


>gi|296204118|ref|XP_002749189.1| PREDICTED: 60S ribosomal protein L4-like [Callithrix jacchus]
          Length = 219

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 27/192 (14%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 28  ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 86

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 87  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICS 146

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRA-LDLSNALIIDGC 157
                      +S      ++    +V+++ V    KTK  V   +     ++   +   
Sbjct: 147 ALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 206

Query: 158 QLDRNFQLAARN 169
           Q  R  +   RN
Sbjct: 207 QRMRAGKGKMRN 218


>gi|219851108|ref|YP_002465540.1| 50S ribosomal protein L4P [Methanosphaerula palustris E1-9c]
 gi|219545367|gb|ACL15817.1| ribosomal protein L4/L1e [Methanosphaerula palustris E1-9c]
          Length = 249

 Score = 74.0 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 87/256 (33%), Gaps = 60/256 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC---------SKSK 52
           ++  +  LDG     I +   +FA   +  ++ + +      +R            S + 
Sbjct: 1   MKAQIIRLDGGVAEEIELP-AVFAEAYRPDLIRKAVVALQSTRRQPHGTNPYAGICSSAV 59

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
           G            ++ G+  A+     V Q +GG  A  P    I +  + KK +  A R
Sbjct: 60  GWGSGRGASHVPRLKNGSRAAK-----VPQAKGGRAAHPPKVEKILIRDINKKEKQKAFR 114

Query: 112 HALSDKFCSNDI------------MVIDNLVSKECKTKYLVT------------------ 141
            A++   C + +            +V ++  +   KT  ++T                  
Sbjct: 115 SAIAASVCEDLVRARGHQFEGACQVVFEDAFAGLTKTSEIITALTAAGVYADVERSKASK 174

Query: 142 -------RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL----RCS 190
                  + R         +     D     AA N+  ++++ V  +N  ++L    +  
Sbjct: 175 KVRAGRGKLRGRRYKQRKSLLIVTRDEPLA-AAANLAGVDVVSVNALNT-ELLAPGAQAG 232

Query: 191 KL-VLSKSAIEALEDR 205
           +L V ++ A+  L +R
Sbjct: 233 RLTVWTQGALNWLGER 248


>gi|209736972|gb|ACI69355.1| Mitochondrial 39S ribosomal protein L4 [Salmo salar]
          Length = 132

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 49  SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRS 107
           + +K RSEV   G K + QKG+G+ARH S     +RGGG + GP  P    + LP KVR 
Sbjct: 27  AHTKVRSEVRGGGKKPWRQKGSGKARHGSIRSPIWRGGGVSHGPRGPTSFYYMLPMKVRV 86

Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148
             ++ ALS K   + + V+D L       +YL+   R    
Sbjct: 87  QGIKIALSSKLAQDYLHVVDTLNIPTPDPQYLMDLIRYRHW 127


>gi|17367847|sp|Q9XF97|RL4_PRUAR RecName: Full=60S ribosomal protein L4; AltName: Full=L1
 gi|4887131|gb|AAD32206.1|AF134732_1 60S ribosomal protein L1 [Prunus armeniaca]
          Length = 408

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 85/262 (32%), Gaps = 60/262 (22%)

Query: 4   LSVRNLDGE----DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           ++V++L+G+        +++ + +     +  I+  V    S   R   + SK       
Sbjct: 12  VTVQSLEGDMATDQTQTVALPD-VMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTS 70

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +    +  A
Sbjct: 71  AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYA 130

Query: 110 LRHALSD-------KFCSNDI--------MVIDNLV------------------SKECKT 136
           +  A++            + I        +V D++                   S   K 
Sbjct: 131 VVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKA 190

Query: 137 KYLVT--------RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
           K   +        R R        +I           A RNIP I+++ V+ +N+  +  
Sbjct: 191 KDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNLLKLAP 250

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  +V +KSA E L+  +
Sbjct: 251 GGHLGRFVVWTKSAFEKLDSIY 272


>gi|71662196|ref|XP_818108.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70883340|gb|EAN96257.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 459

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 84/258 (32%), Gaps = 60/258 (23%)

Query: 2   IE----LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSK 52
           ++    + V NL+ E      +   +F       +  + +   ++R Q++  +       
Sbjct: 109 MKERIIVPVFNLNNEVTHTRELDPFVFGMYPETEELSKNLTYWLVRCQNYASKWDY---- 164

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
              E+     K +   G G  R S++   Q+  GG+     P  + +  +  K  S + R
Sbjct: 165 ETREIWRKAKKNWPNTGMGMPRVSNRKNHQYLWGGRTKPSKPWNMLMPTMDVKTWSKSNR 224

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNAL------------------- 152
             L+ K     + V++ L   E  T+            +                     
Sbjct: 225 MMLTLKMLQGRLQVVERLTLSEP-TQECYLGLCRTMSWDVRHTGGGVLFMDGGSRITPSI 283

Query: 153 ----------------------IIDGCQLDRNFQLAARNIPNIN----LLPVQGINVYDI 186
                                 ++   Q D N   + + +         +P+   NV+D 
Sbjct: 284 EFDRSFFFGSFFNGRNKVVRPTLLCDEQYDYNKTASKQRMKGPKGPKNPIPINRFNVFDA 343

Query: 187 LRCSKLVLSKSAIEALED 204
           ++  +LV+++ AI  LE+
Sbjct: 344 MQHERLVITEGAIMQLEE 361


>gi|183212279|gb|ACC54802.1| ribosomal protein L4 [Xenopus borealis]
          Length = 318

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 70/235 (29%), Gaps = 54/235 (22%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KMYVQKGTGRARHSS 77
              +  I+  V        R   + SK       +E   TG    ++   +G G  R   
Sbjct: 2   APIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 61

Query: 78  KSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR----------HALSDKFCSNDI-- 123
            +      GG+ F P          +    +  A+             +S      +I  
Sbjct: 62  GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPE 121

Query: 124 --MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC------------------------ 157
             +V+++ V    KTK  V   + L   N +                             
Sbjct: 122 VPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCV 181

Query: 158 --QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
               +     A RNIP I LL V  +N+  +     +    + ++SA   L+D +
Sbjct: 182 IYNENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLY 236


>gi|326578097|gb|ADZ95692.1| 60S ribosomal protein L4 [Nosema bombycis]
          Length = 334

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 57/255 (22%)

Query: 3   ELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV---- 57
           ++++ NLDG      + + + +  ++ +  I+  V   +    R   + SK         
Sbjct: 4   KINIYNLDGNTVKDTVEMPD-VMTIEVRPDIIETVHSLERLNLRQPYAVSKYAGMQHSAA 62

Query: 58  -AYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG  M       G+G  R    + + F   G+   P+         +   +R +A+ 
Sbjct: 63  SWGTGRAMARCPRVAGSGTRRAGQGAFANFCRKGRMAHPIKTTRRWCRKVNLNLRRIAIA 122

Query: 112 HAL--SDK-------------FCSNDIMVIDNLVSKECKTKYLVT--------------- 141
            A+  S K                  ++V D  V    KTK                   
Sbjct: 123 MAVAASSKPSFVQARGHKVENVKMIPLIVSDE-VMSLTKTKDAFELIQNFGLEDEVKKVK 181

Query: 142 ----------RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                     + R    +    +     + +   A  NI  ++ L V  ++++++     
Sbjct: 182 DSKTLRAGKGKMRNRRFTKRKGVLIVHTNDSDLRAFTNIQGVDQLNVDKMSIFELAPGGH 241

Query: 192 ----LVLSKSAIEAL 202
               ++ ++SA + L
Sbjct: 242 SGRLILWTESAFKKL 256


>gi|116789694|gb|ABK25345.1| unknown [Picea sitchensis]
          Length = 406

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 79/258 (30%), Gaps = 60/258 (23%)

Query: 4   LSVRNLD--GEDKGV--ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GR 54
           +SV N++  G + G   I + + +     +  I++ V    +  KR   + SK       
Sbjct: 11  VSVLNVESEGAEAGNDAIPLPD-VLKACIRPDIVSFVHANMAKNKRQPYAVSKKAGHQTS 69

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +    +  A
Sbjct: 70  AESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHA 129

Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR----------- 144
           +  AL+            + I       +V+ + V    KT   +   +           
Sbjct: 130 VVSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKA 189

Query: 145 ----------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   +I           A RNIP + +  V  +N+  +  
Sbjct: 190 KKSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAP 249

Query: 189 CSKL----VLSKSAIEAL 202
              L    + +KSA E L
Sbjct: 250 GGHLGRFIIWTKSAFEKL 267


>gi|193084316|gb|ACF09975.1| ribosomal protein L4 [uncultured marine group II euryarchaeote
           KM3-130-D10]
          Length = 292

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 76/265 (28%), Gaps = 75/265 (28%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSK------------SKGRSEV 57
           DG+    +++  ++F+ + ++ I+   +      +R                  K   E 
Sbjct: 32  DGK---SVTLP-NVFSSEVREDIIRSAVLASRANRRQPYGHREHDGKRAPQPGMKHSVEW 87

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117
              G  +         R  +++     G       V       L  K R  A   A++  
Sbjct: 88  WGKGRGVSRIMRKTGQRTGAQNPHTRGGRRAHGPKVDKDWSQKLNSKQRRQARDSAIAAT 147

Query: 118 FCSNDI--------------MVIDNLVSK---------------ECKTKYLVTRFR---- 144
             +  +              +VID  V                 +  T+  V        
Sbjct: 148 VDTRMVAARGHRFDDDIRFPIVIDGYVESRNGSDEKYDVESLPLQYSTRKFVAMMEGLGL 207

Query: 145 ----------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
                                     +   I+           AARN+P ++++  + ++
Sbjct: 208 SADLERAKGGRNIRAGKGKMRGRRYRTPKSILVVVSNRDGLHKAARNVPGVDVVVAKDLS 267

Query: 183 VYDIL---RCSKL-VLSKSAIEALE 203
             D+       +L V +K+AIEALE
Sbjct: 268 AEDLAPGGDAGRLTVWTKAAIEALE 292


>gi|254283297|ref|ZP_04958265.1| ribosomal protein L4/L1e [gamma proteobacterium NOR51-B]
 gi|219679500|gb|EED35849.1| ribosomal protein L4/L1e [gamma proteobacterium NOR51-B]
          Length = 86

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 130 VSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
             ++ KTK L  + +   L N  +I   ++D+N  LA+RN+  +++  V+G+N   ++  
Sbjct: 10  DLEQPKTKLLAEQLKGFGLENV-LIISSEVDKNLYLASRNLHRVDVSDVEGVNPVSLVAF 68

Query: 190 SKLVLSKSAIEALEDRF 206
            K++++  A++  E+  
Sbjct: 69  DKVLVTVDAVKKFEEAL 85


>gi|15790633|ref|NP_280457.1| 50S ribosomal protein L4P [Halobacterium sp. NRC-1]
 gi|169236372|ref|YP_001689572.1| 50S ribosomal protein L4P [Halobacterium salinarum R1]
 gi|46396658|sp|Q9HPD3|RL4_HALSA RecName: Full=50S ribosomal protein L4P
 gi|226730670|sp|B0R657|RL4_HALS3 RecName: Full=50S ribosomal protein L4P
 gi|10581160|gb|AAG19937.1| 50S ribosomal protein L4E [Halobacterium sp. NRC-1]
 gi|167727438|emb|CAP14226.1| ribosomal protein L4.eR [Halobacterium salinarum R1]
          Length = 250

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 82/255 (32%), Gaps = 56/255 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           ++++VR+LDG+D G + +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MQVTVRDLDGDDAGTLDLP-RVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV-HALPKKVRS-----LAL 110
              +G  M       +A      V Q  GG KA  P         +  K R         
Sbjct: 60  SQGSGRGM---AHVPKANGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVA 116

Query: 111 RHALSDKFCSN----------DIMVIDNLVSKECKTKYLVTRFR---------------- 144
               S+                ++V D+      KT+ +V+                   
Sbjct: 117 ATTDSELVADRGHNFDDDVEFPLVVSDDFE-DLVKTQDVVSLLEALGVHADIERADEGRT 175

Query: 145 ----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSK 191
                             I+     +     AARN+  +++   + +N  D+       +
Sbjct: 176 VRAGQGTLRGRKYQEPTSILFVTASESGPSTAARNLAGVDVATGREVNAEDLAPGAEPGR 235

Query: 192 L-VLSKSAIEALEDR 205
           L V ++SA+E +  R
Sbjct: 236 LTVWTESAVEEVAQR 250


>gi|172413|gb|AAA34974.1| ribosomal protein L2 [Saccharomyces cerevisiae]
          Length = 362

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 77/260 (29%), Gaps = 56/260 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  +    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTLFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR------------- 144
            A++            + +       +V+   +    KTK  V   +             
Sbjct: 124 SAIAATAVASLVLARGHRVETIPEIPLVVSTDLDSIQKTKEAVAALKAVGAHSDLLKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC- 189
                                 ++   + D     A RN+P++    V  +N+  +    
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPSVETANVASLNLLQLAPSA 242

Query: 190 ---SKLVLSKSAIEALEDRF 206
                ++ +++A   L+  +
Sbjct: 243 HLGRFVIWTEAAFTKLDQVW 262


>gi|70952888|ref|XP_745581.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525950|emb|CAH77561.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 458

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 7/165 (4%)

Query: 48  CSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS 107
            + +K       T       K    +  +   ++ +  G     P+       + +K+  
Sbjct: 149 HASTKLSLFNRITNKFPCQNKSGKDS--NDSEINMWYQGTPKNHPIRPFDQTKINRKLLW 206

Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA-----LDLSNALIIDGCQLDRN 162
             ++  LS KF  + I V+DN + K  KTKY V   R       + +  +      ++ N
Sbjct: 207 KGMKILLSAKFAQDQIKVVDNFLIKSHKTKYTVKYLRNILGNKCNSALLVHEGKTDVNDN 266

Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRFK 207
           F  A  NI +I    V+G+N+Y++L+   +V +  A++ L    K
Sbjct: 267 FLWACANIASIKRENVEGVNIYNLLKYRYVVFTYKALKNLIYELK 311


>gi|297741490|emb|CBI32622.3| unnamed protein product [Vitis vinifera]
          Length = 344

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 65/219 (29%), Gaps = 34/219 (15%)

Query: 2   IELSVRNLDGEDKG--VISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGR 54
           + + V   D    G   + + + +     +  I+  V    S   R   +       +  
Sbjct: 10  VTVQVLKSDMATDGGNAVPLPD-VMKASIRPDIVTFVHSNISKNSRQPYAVSRRAGHQTS 68

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111
           +E   TG    ++    G G  R    +      GG+ F P  I         V      
Sbjct: 69  AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQK--- 125

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIP 171
                          D+   +  K K    R R        +I           A RNIP
Sbjct: 126 -------------PKDSHAIRPGKGK---MRNRRYISRKGPLIVYGTEGAKLVKAFRNIP 169

Query: 172 NINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
            + +  V  +N+  +         ++ +KSA E L+  +
Sbjct: 170 GVEVANVDRLNLLKLAPGGHLGRFVIWTKSAFEKLDSIY 208


>gi|320588706|gb|EFX01174.1| 60S ribosomal protein [Grosmannia clavigera kw1407]
          Length = 356

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 74/265 (27%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +++   DG+          +F    +  I+ +V    +  KR        +  +  +E
Sbjct: 5   PTVTIHGADGKPTSTSQPIPAVFLSPIRPDIVQQVHTGMAKNKRQPYSVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          + +  +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKINQGQKRFATA 124

Query: 112 HALSDKFCSNDIMVIDNLVSKEC-----------------KTKYLVTRF----------- 143
            A++    +  ++   + +S                    KT   V              
Sbjct: 125 SAVAASGVAPLLLARGHKISSIPEVPLVVDSAAFAEAAYAKTAKAVALLTALGAGDELSK 184

Query: 144 -----------------RALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                            R       L I   ++D +      RNIP +    V  +N+  
Sbjct: 185 VRNSKKLRAGKGKLRGRRYRQRRGPLFIYDPEVDGKELVHGFRNIPGVETNSVFALNLLQ 244

Query: 186 ILRCSK----LVLSKSAIEALEDRF 206
           +         ++ + +A  AL+  +
Sbjct: 245 LAPGGHLGRFVIWTSAAFAALDKIY 269


>gi|46125617|ref|XP_387362.1| hypothetical protein FG07186.1 [Gibberella zeae PH-1]
          Length = 352

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +++   DG   G       +F    +  I+ +V    +  KR        +  +  +E
Sbjct: 5   PTVTILGKDGAPTGATHAIPAVFTSPIRPDIVQQVHTGMAKNKRQPYSVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A+ 
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRRWHIKVAVGQKRYAVC 124

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKT--------------------- 136
            AL+       +              +VID+ V +                         
Sbjct: 125 SALAASAAVPLLQARGHQVNSVPEVPLVIDSAVFEAAAIAKTSAALGLLKAVGAGEDVSK 184

Query: 137 ----------KYLVTRFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                     K  +   R       L+I   + D +    A RNI  +   PV  +N+  
Sbjct: 185 VKNSKKIRAGKGKLRGRRHRQRRGPLVIYSPETDGKELVTAFRNITGVETCPVTALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V +  A +AL+  +
Sbjct: 245 LAPGGHLGRFIVWTSGAFKALDSIY 269


>gi|224062820|ref|XP_002200110.1| PREDICTED: ribosomal protein L4 [Taeniopygia guttata]
          Length = 383

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 64/221 (28%), Gaps = 52/221 (23%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  ++  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGEASGKNVTLP-AVFKAPIRPDVVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR- 111
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNIMQKRYAICS 126

Query: 112 ---------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC- 157
                      +S      +I    +V+++ V    KTK  V   + L   N +      
Sbjct: 127 ALAASALPALVMSKGHRIEEIPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYAS 186

Query: 158 -------------------------QLDRNFQLAARNIPNI 173
                                      D     A RNIP I
Sbjct: 187 QRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIRAFRNIPGI 227


>gi|302348733|ref|YP_003816371.1| 50S ribosomal protein L4P [Acidilobus saccharovorans 345-15]
 gi|302329145|gb|ADL19340.1| 50S ribosomal protein L4P [Acidilobus saccharovorans 345-15]
          Length = 276

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 81/254 (31%), Gaps = 51/254 (20%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58
           +   + +G++ G + + + +F +  ++ ++ RV   +             +  +  +   
Sbjct: 18  VPKYDAEGKEAGEVQLPD-VFRVPVRRDLIHRVFMSEFTAALQPKGRDPMAGKRTTAVSL 76

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
                +        +  +  +     G       V       + +  R L    AL+   
Sbjct: 77  GIHHGLARVPRIRGSTRARLAPFVRGGRRAFPPTVEKKIKEDVNRTERILGTMSALAATA 136

Query: 119 CSNDI-------------MVIDNLVSKECK-TKYLVTRF--------------------- 143
               +             +++D+ VS+  K T                            
Sbjct: 137 IPELVRDRGHVFSATATPIILDSSVSEAVKRTSDARELLSKIGVYSDIERAYEGTRIRAG 196

Query: 144 ------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL-V 193
                 R      +++     +D  F  + R  P ++++  Q ++V ++       +L V
Sbjct: 197 KGKMRGRRYVTPVSILFIVDDIDSPFARSVRGFPGVDVVEPQLVSVLELAPGGEPGRLTV 256

Query: 194 LSKSAIEALEDRFK 207
           ++ +A+ AL +RFK
Sbjct: 257 ITSNALNALAERFK 270


>gi|255568434|ref|XP_002525191.1| 60S ribosomal protein L4, putative [Ricinus communis]
 gi|223535488|gb|EEF37157.1| 60S ribosomal protein L4, putative [Ricinus communis]
          Length = 410

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 74/254 (29%), Gaps = 56/254 (22%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS 62
           ++  +    + + + +     +  I++ V    S   R   + SK       +E   TG 
Sbjct: 22  DMATDAVTTVPLPDSM-KASLRPDIVSFVHAQMSKNSRQPYAVSKRAGHQTSAESWGTGR 80

Query: 63  ---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDK 117
              ++    G G  R    +      GG+ F P          +    +  AL  A++  
Sbjct: 81  AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYALVSAIAAS 140

Query: 118 FCSNDIM--------------VIDNLVSKECKTKYLVTRFR------------------- 144
              + +M              VI +      KT   +   +                   
Sbjct: 141 AIPSLVMARGHKVESVPEMPLVISDSAESIEKTSTALKVLKEIGAYPDVEKAKDSHAIRP 200

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----L 192
                           +I           A RNIP + +  V+ +N+  +         +
Sbjct: 201 GKGKMRNRRYISRKGPLIVYGSEGAKLVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFV 260

Query: 193 VLSKSAIEALEDRF 206
           + +KSA E L+  +
Sbjct: 261 IWTKSAFEKLDSIY 274


>gi|242398280|ref|YP_002993704.1| 50S ribosomal protein L4P [Thermococcus sibiricus MM 739]
 gi|259491578|sp|C6A160|RL4_THESM RecName: Full=50S ribosomal protein L4P
 gi|242264673|gb|ACS89355.1| 50S ribosomal protein L4P [Thermococcus sibiricus MM 739]
          Length = 255

 Score = 72.4 bits (176), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 87/255 (34%), Gaps = 51/255 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           +++ V +L+GE    I++   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MKVKVFSLNGEPIEEITLP-KVFQTPFRPDLIKRAVIASWTHRIQPQGRDPLAGKRRVTE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LPKKVRSLALRHALS 115
               G  M   +    +   +  V   RGG +A  P     +   + KK + LAL  A++
Sbjct: 60  NIGKGRGMARVERIKTSPRFAAFVPFARGGRRAHPPKVEKVIWEGINKKEKKLALMSAIA 119

Query: 116 DKFCSNDI----MVIDNL-------------VSKECKTKYLVTRFRALDLSNALIIDGC- 157
                + +     VIDN+             V +  +T+ +  +    +       +   
Sbjct: 120 ATANYDLVRARGHVIDNIPQVPLVVENELEKVYRTAQTREIFKKLGIWEDIERAKRNTKV 179

Query: 158 ----------------------QLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSKL 192
                                   +      ARN P ++++ V  + V  +       +L
Sbjct: 180 RAGKGKMRGRRYKKAKGPLIVVAKNEGIIQGARNHPGVDVVVVDNLGVELLAPGAHPGRL 239

Query: 193 -VLSKSAIEALEDRF 206
            + +K AIE L + +
Sbjct: 240 TIWTKGAIERLREFY 254


>gi|218884487|ref|YP_002428869.1| 50S ribosomal protein L4P [Desulfurococcus kamchatkensis 1221n]
 gi|218766103|gb|ACL11502.1| 50S ribosomal protein L4P [Desulfurococcus kamchatkensis 1221n]
          Length = 275

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +++V  ++G   G I + E +F +  ++ ++ R              K +       T +
Sbjct: 19  KVNVYGVNGNVVGEIELPE-LFNVPIRRDLIRRAFLSAFTAMLQP--KGRDPLAGKRTTA 75

Query: 63  KMYVQKGTGRARHSS------KSVSQFRGGGKAFGPVPIIGVH-ALPKKVRSLALRHALS 115
           K +   G G AR         + V   R G  AF P P   +H  + KK R +A+  AL+
Sbjct: 76  KYW-GVGYGLARVPRLPNGTARFVVSTRKGHAAFPPRPDERIHEEVNKKERVMAIISALA 134

Query: 116 DKFCSN--------------DIMVIDNLVSKECKTKYLVTRFRALDLS------------ 149
                                ++++D   S   KT  +      + L             
Sbjct: 135 ATSRPELVRERGHVFTPGRLPVIIVDEAESSISKTTQVREYLEKIGLWSDVERSLDGMGI 194

Query: 150 ---------------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCS 190
                           +++            A RN+P +++     +++  +    +   
Sbjct: 195 RAGRGKMRGRTYVEPRSILFIVSSYSIPLAKAVRNLPGVDIATPGNLSILHLAPGGVPGR 254

Query: 191 KLVLSKSAIEALEDRFK 207
             V+S  A+  L  +++
Sbjct: 255 LTVISMKALNELASKYR 271


>gi|67043811|gb|AAY64003.1| ribosomal protein L4 [Pelodiscus sinensis]
          Length = 193

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 24/171 (14%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV +  GE  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYSEKGEVSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR-- 111
            TG    ++   +G G  R    +      GG+ F P          +    +  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127

Query: 112 --------HALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150
                     +S      ++    +V+++ V    KTK  V   + L   N
Sbjct: 128 LAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWN 178


>gi|258571201|ref|XP_002544404.1| 60S ribosomal protein L4-A [Uncinocarpus reesii 1704]
 gi|237904674|gb|EEP79075.1| 60S ribosomal protein L4-A [Uncinocarpus reesii 1704]
          Length = 372

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 76/265 (28%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   DG+  G       +F    +  I+  V    +  +R   + S     +  +E
Sbjct: 5   PTVTIATADGKPSGATHPLPTVFTAPIRPDIVQSVHTGIAKNRRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A  
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINVGQKRFATA 124

Query: 112 HALSDKFCSNDIMVIDNLVSKEC--------KT--------------------------- 136
            AL+     + +    + V+           KT                           
Sbjct: 125 SALAASSVPSLLFARGHRVANIPEVPLVVDSKTFENGAIAKTKAAIALLQALGAGAELVK 184

Query: 137 ----------KYLVTRFRALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
                     K  +   R       L++   ++D +    A RNIP +    V  +N+  
Sbjct: 185 VQKSRKIRAGKGKMRGRRYRQRRGPLVVYNPEVDGKELVKAFRNIPGVETCSVFALNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + SA  AL+  +
Sbjct: 245 LAPGGHLGRFIVWTSSAFSALDQLY 269


>gi|257076560|ref|ZP_05570921.1| 50S ribosomal protein L4P [Ferroplasma acidarmanus fer1]
          Length = 256

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 24/196 (12%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
           ++ +V +++GE    I +   +F ++ ++ ++ +  R  S   R        + ++    
Sbjct: 1   MKTNVYSIEGEVTKEIELP-QVFEIETREDLIHKAFRAISLSMRQPYGSSPLAGTRRVGH 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSD 116
                  +                S   G          +    + KK R LA   A++ 
Sbjct: 60  NLGPNHGISRIPRLASGSRGVLLASMVGGRSALSPRSDKVLYKKINKKERRLAKLSAIAF 119

Query: 117 KFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLL 176
                 I+   + +S+E   K         D+ +   +                  + +L
Sbjct: 120 TANKERILQRGHRISEESIEKLTFPVVVEDDIESITKVKDA---------------VQVL 164

Query: 177 PVQGINVY-DILRCSK 191
               + VY D+LR   
Sbjct: 165 --SNLGVYDDVLRSKD 178


>gi|269863418|ref|XP_002651215.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220064936|gb|EED42841.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 282

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 80/255 (31%), Gaps = 54/255 (21%)

Query: 1   MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           M+ ++V   DG+   G I+    +F ++ +  ++ +     +   R        +  +  
Sbjct: 1   MMNVNVYGKDGKTVVGEIA-RPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59

Query: 55  SEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH---------ALP 102
           +E   TG  +      KG+G  R    + + F   G+   P                 L 
Sbjct: 60  AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119

Query: 103 KKVRSLALRHALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
             +   A  HA   +   + I       +V+ + +S   KT+      + ++L   L   
Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179

Query: 156 GCQL------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
                                       D     A  NI  + L  V  +N+  +     
Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHDNAALSAFSNIEGVELANVNSLNLLRLCPGGH 239

Query: 192 L----VLSKSAIEAL 202
           L    + ++SA + L
Sbjct: 240 LGRLILWTESAFKKL 254


>gi|126465914|ref|YP_001041023.1| 50S ribosomal protein L4P [Staphylothermus marinus F1]
 gi|126014737|gb|ABN70115.1| LSU ribosomal protein L4P [Staphylothermus marinus F1]
          Length = 271

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 54/252 (21%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYT 60
           V + DGE    I++   IF+L  ++ ++ R                  +  +  +     
Sbjct: 18  VFSSDGEKVEEITLPP-IFSLPVRKDLIRRAFLSAFTSMLQPKGRDPLAGKRTTARSWGV 76

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G  +        +R +  S +  RGG  AF P P   +H    K        +       
Sbjct: 77  GRGLARVPRLPNSRAAFISFA--RGGHAAFPPRPDERIHERINKREKAYAVASAIAATAK 134

Query: 121 NDIM---------------VIDNLVSKECKTKYLVTRF---------------------- 143
            D++               ++D++  K  K +                            
Sbjct: 135 VDLVRGRGHVFQQDKLPVVLLDDVEDKISKARDAKELLIKLGLWSDIVRSYERIRIRAGK 194

Query: 144 -----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSKLVL 194
                R      +++      D+ F  A RN P +++     + +  +    +     V 
Sbjct: 195 GKMRGRRYVEPRSILFVVTSYDKPFAKAVRNFPGVDVATPNNLGILHLAPGGVPGRLTVF 254

Query: 195 SKSAIEALEDRF 206
           ++SAIE +  ++
Sbjct: 255 TRSAIEDISRKY 266


>gi|84468264|dbj|BAE71215.1| putative 60S ribosomal protein L1 [Trifolium pratense]
 gi|84468330|dbj|BAE71248.1| putative 60S ribosomal protein L1 [Trifolium pratense]
          Length = 406

 Score = 71.3 bits (173), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 74/261 (28%), Gaps = 56/261 (21%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55
           + +   + D       ++   D+     +  I+  V    S   R   +       +  +
Sbjct: 10  VTVQTLDSDMATDSPTTLPIPDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQTSA 69

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +      GG+ F P          +    +  A+
Sbjct: 70  ESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAV 129

Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR------------ 144
             A++            + I       +V+ +      KTK  +   +            
Sbjct: 130 VSAIAASAVPSLVLARGHRIEAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAK 189

Query: 145 ---------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                                  +I           A RNIP + +  V+ +N+  +   
Sbjct: 190 DSHGIRPGKGKMRNRRYISRKGPLIVYGTDGAKAVKAFRNIPGVEIANVERLNLLKLAPG 249

Query: 190 SK----LVLSKSAIEALEDRF 206
                 +V +KSA E L+  +
Sbjct: 250 GHLGRFVVWTKSAFEKLDSIY 270


>gi|330835824|ref|YP_004410552.1| 50S ribosomal protein L4P [Metallosphaera cuprina Ar-4]
 gi|329567963|gb|AEB96068.1| 50S ribosomal protein L4P [Metallosphaera cuprina Ar-4]
          Length = 263

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 85/253 (33%), Gaps = 50/253 (19%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEV 57
           E+ V +L G     I +   IF+   ++ ++ RV      +          +  +  ++ 
Sbjct: 9   EIQVLDLSGNKNKSI-LLPSIFSYPIRKDLIRRVFHSSFTKGLQPKGRDPMAGKRTTAKS 67

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS- 115
                 +        A   +       GG  AF P         + ++ + +A+  AL+ 
Sbjct: 68  FGINLGLARVPRVRGAGEGAL-APNTVGGRLAFPPSTIERIHEEVNEREKRMAIVSALAS 126

Query: 116 -----------DKFCSNDIMVIDNLVSKECKTKYLVTRF--------------------- 143
                       +F     +V+ + + K  KTK L                         
Sbjct: 127 TTVKDVVTKRGHRFTGELPLVVVDDLGKISKTKELQDILIKLGLEAELERASYRRIRAGK 186

Query: 144 -----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKLVL- 194
                R    +   ++           AA N+P ++++  + ++V  +       +LV+ 
Sbjct: 187 GKMRGRKYKRTVGPLLVVHDYSLPVVKAALNLPGVDIVSAKDVSVIHLAPGGHPGRLVIY 246

Query: 195 SKSAIEALEDRFK 207
           ++S+I  L++RFK
Sbjct: 247 TESSINILQNRFK 259


>gi|154333576|ref|XP_001563045.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060054|emb|CAM42012.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 416

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 77/253 (30%), Gaps = 55/253 (21%)

Query: 5   SVRNLDGEDKGVISVSEDIFAL-----KPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
            V +L  +      +   IF L     +  + +   ++R Q++  +          E+  
Sbjct: 73  PVFDLANKVSHTRELDPFIFGLYPETEEMAKNLSYWLVRCQNFSSKWDYEN----REIWR 128

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118
              K +   G G AR   +       G  +    P  + +  +  K  S + R  ++ K 
Sbjct: 129 KAKKNWPNTGMGMARVGDRKNHAHPWGAHSKPVKPWNMLMPTMDVKTWSKSNRMLVTLKM 188

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNA-------------LIIDGCQLDRNFQL 165
               + +++ L   E   +  +   R +                   +    + DR F  
Sbjct: 189 LQGRLQIVERLTLPEPTQEAYLELCRTMGWDVRHKGGGALFMDGGSRLTPSSEYDRAFFF 248

Query: 166 -AARNIPNINL------------------------------LPVQGINVYDILRCSKLVL 194
            +  N  N  +                              +P+   N YD L    L++
Sbjct: 249 GSFFNGRNKLVRPTLLCDEPYDYNRTSSKVRTKGPKGQKNPIPINRFNAYDALTHDTLII 308

Query: 195 SKSAIEALE-DRF 206
           ++ A+  LE + +
Sbjct: 309 TEGALMQLEDEMY 321


>gi|237862634|gb|ACR24942.1| ribosomal protein L4 [Lepidochitona cinerea]
          Length = 157

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 12/122 (9%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV    GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 7   ISVFTEKGESSGTNVTLP-AVFRAPIRPDIVNFVHFQMKMNGRQPYAVSEKAGHQTSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R+ A+  
Sbjct: 66  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRININQRTYAMCS 125

Query: 113 AL 114
           A+
Sbjct: 126 AI 127


>gi|118489137|gb|ABK96375.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 407

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 70/249 (28%), Gaps = 56/249 (22%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KM 64
               +++ + +     +  I+  V    S   R   + SK       +E   TG    ++
Sbjct: 24  SAATVALPD-VMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRI 82

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH---------- 112
               G G  R    +      GG+ F P          +    +  A+            
Sbjct: 83  PRVPGGGTHRAGQGAYGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSL 142

Query: 113 ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------------------ 144
            ++       +    ++I +      KT   +   +                        
Sbjct: 143 VMARGHRVESVPEMPLIISDSAESIEKTSTAIKVLKEIGAFPDAEKAKDSHAIRPGKGKM 202

Query: 145 ---ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKS 197
                      +I           A RNIP + +  V+ +N+  +         ++ +KS
Sbjct: 203 RNRRYISRKGPLIVYGTEGAKMVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKS 262

Query: 198 AIEALEDRF 206
           AIE L+  +
Sbjct: 263 AIEKLDSIY 271


>gi|300708062|ref|XP_002996219.1| hypothetical protein NCER_100725 [Nosema ceranae BRL01]
 gi|239605500|gb|EEQ82548.1| hypothetical protein NCER_100725 [Nosema ceranae BRL01]
          Length = 334

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 83/258 (32%), Gaps = 55/258 (21%)

Query: 3   ELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV---- 57
           + +   LDG   K  I V + +F++  +  I+ +V   +    R   + S          
Sbjct: 4   KTNCYELDGTTIKSTIDVPD-VFSVDIRSDIIEQVHSLERLNLRQPYAVSPDAGMQHSAV 62

Query: 58  -AYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGP--VPIIGVHALPKKVRSLALR 111
              TG  +       G G  R    + + F   G+   P          +P   R +A+ 
Sbjct: 63  SWGTGRAIARCPRIGGGGSRRSGQGAFANFCRKGRMAHPTTTMRRWCRKIPLNTRRIAIA 122

Query: 112 HALSDKFC--------------SNDIMVIDNLVSKECKTKYLVT---------------- 141
            +++                   N  +V+ + + +  KTK                    
Sbjct: 123 MSIAASARPSFIEARGHRIENVKNIPLVVSDKIKELVKTKDAFEVIKNFNLAEEVEKVKN 182

Query: 142 ---------RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RC 189
                    + R         +           A RNIP ++ L +  +N+Y++      
Sbjct: 183 SKSLRGTKGKMRNRRYRMRKGLLLIHDSPVELKAFRNIPGVDQLNINKLNIYELAPGGHA 242

Query: 190 SKLVL-SKSAIEALEDRF 206
            +L+L ++S+ + LE  F
Sbjct: 243 GRLILWTESSFKKLESMF 260


>gi|159145606|gb|ABW90340.1| putative ribosomal protein L4 [Sipunculus nudus]
          Length = 151

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV N   E  G       +F    +  I+  V        R        +  +  +E  
Sbjct: 8   ISVYNEKAEVSGDTIKLPAVFKAPIRPDIVNFVHFEMKKNSRQPYAVSNKAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHA 113
            TG    ++   +G G  R    +      GG+ F P          +    +  A+  A
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRINVNQKRYAVCSA 127

Query: 114 L 114
           +
Sbjct: 128 I 128


>gi|124484911|ref|YP_001029527.1| 50S ribosomal protein L4P [Methanocorpusculum labreanum Z]
 gi|124362452|gb|ABN06260.1| LSU ribosomal protein L4P [Methanocorpusculum labreanum Z]
          Length = 247

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 79/248 (31%), Gaps = 47/248 (18%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSE 56
           ++ +V+ ++G     I +   +F    +  ++ R +      +         +  +  +E
Sbjct: 1   MKANVKAINGSVLHEIELP-AVFDEAYRPDLIKRAILAYQSEQYQPHGADPYAGMRTSAE 59

Query: 57  VAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
              +               ++  V   +GG  A  P    I V  + KK ++ A+R A++
Sbjct: 60  GWGSKRGEAKIPRIKNGSRAA-KVPNVKGGHPAHAPKAEKILVEKINKKEKAKAIRSAIA 118

Query: 116 ------------DKFCSNDIMVIDNLVSKECKTKYLVTRF-------------------- 143
                        KF     +++D+   +  KT  +                        
Sbjct: 119 ATVNTELVTARGHKFEGEAAIIVDDSFEQIAKTAEVKLALVALGLGADLERARLSRNIRA 178

Query: 144 ---RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSKL-VLSK 196
              +              +     LA  NI  ++ + V  +N+  +       +L V ++
Sbjct: 179 GRGKTRGRKYKQAKSALIVTSGEFLAGANIAGVDCVSVNALNINVLAPGADAGRLTVWTE 238

Query: 197 SAIEALED 204
           +AI+   +
Sbjct: 239 AAIKKFVE 246


>gi|284116244|ref|ZP_06386717.1| Ribosomal protein L4/L1e [Candidatus Poribacteria sp. WGA-A3]
 gi|283829528|gb|EFC33883.1| Ribosomal protein L4/L1e [Candidatus Poribacteria sp. WGA-A3]
          Length = 98

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 48/95 (50%)

Query: 110 LRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARN 169
           ++ ALS K  + +++V+ +L   E KTK +    + L  +  ++    +       A RN
Sbjct: 1   MQSALSSKMAAGELLVLADLSLPEPKTKLMAKAVKQLGATGPVLFVVGRDHDAVFRATRN 60

Query: 170 IPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204
           +  +  +P + + VYD+LR   LV+ K  +  +++
Sbjct: 61  LAQVKAVPPEELTVYDVLRYQTLVVLKDELPNVQE 95


>gi|13541156|ref|NP_110844.1| 50S ribosomal protein L4P [Thermoplasma volcanium GSS1]
 gi|46396652|sp|Q97BX6|RL4_THEVO RecName: Full=50S ribosomal protein L4P
 gi|14324544|dbj|BAB59471.1| ribosomal protein large subunit L4 [Thermoplasma volcanium GSS1]
          Length = 255

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 86/250 (34%), Gaps = 49/250 (19%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK--GRSEVAYT 60
           ++ + +++GE +G I + E IF    ++ ++ +  R  S   R     S   G   V +T
Sbjct: 4   KVPIYSINGEKRGEIDLPE-IFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHT 62

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIG---VHALPKKVRSLALRHALSDK 117
                      R    S+ V      G      P         + +K R +A   A++  
Sbjct: 63  TKPGLGISRMPRIAGGSRVVGIASAVGGKSAHSPRSTKKLYVGINEKERKMAKFSAIAMT 122

Query: 118 FCSNDI--------------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC------ 157
             ++ +              +V+++ VS   KTK  V   +++ L   ++          
Sbjct: 123 ASADAVRKRGHRFSESLPLPVVVEDAVSGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRA 182

Query: 158 -------------------QLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSKLVL 194
                                D       +++P +++  +  +++  +    +     V 
Sbjct: 183 GRGKMRNRRYKVPKSLLIVGTDSVSLKVFKSLPGVDVASMDSLSIRKLAPGGVGGRLTVY 242

Query: 195 SKSAIEALED 204
           ++SAIE L +
Sbjct: 243 TESAIEKLRE 252


>gi|313232345|emb|CBY09454.1| unnamed protein product [Oikopleura dioica]
          Length = 355

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 5/196 (2%)

Query: 15  GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
           G+  +   I+     Q  +   L WQ+  K +     +                G+G   
Sbjct: 104 GIAQLHPKIWTAVVDQQAIHETLEWQNTYKTVD-MSFEQSRMETGNKRWAKPWGGSGHGY 162

Query: 75  HSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS----LALRHALSDKFCSNDIMVIDNLV 130
              +  +     G AF   P     +    +       AL   L+ KF   D++++ NL 
Sbjct: 163 ERVRDKTGPYFKGGAFTDEPRRPFISNFHMIDRVTRVKALVSCLTLKFLQGDMILVSNLS 222

Query: 131 SKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
           +        +   R  ++S  ++          +   R+    NL PV+G+N   +L+  
Sbjct: 223 NSIDSISKKLNIKREPEMSYLVLNKDNNYPIPLENWIRSKKYYNLFPVEGLNAKSLLKYD 282

Query: 191 KLVLSKSAIEALEDRF 206
           KL+L    +E LE R 
Sbjct: 283 KLILDLETLEYLEKRL 298


>gi|148905730|gb|ABR16029.1| unknown [Picea sitchensis]
          Length = 406

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 58/257 (22%)

Query: 4   LSVRNLD--GEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRS 55
           +SV+N++  G + G  +V   D+     +  I+  V    +  KR   + SK       +
Sbjct: 11  VSVQNVESEGAEGGSDAVPLPDVLKACIRPDIVEFVHANMAKNKRQPYAVSKKAGHQTSA 70

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +      GG+ F P          +    +  A+
Sbjct: 71  ESWGTGRAVSRIPRVAGGGTHRAGQGAFGNMCRGGRMFAPTKIWRKWHRKINLNQKRHAV 130

Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR------------ 144
             AL+            + I       +V+ + V    KT   +   +            
Sbjct: 131 VSALAASAIPALVMARGHRIESVPELPLVLSDGVEGVEKTSAALKVLKKVGAFADVEKAK 190

Query: 145 ---------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                                  +I           A RNIP + +  V  +N+  +   
Sbjct: 191 KSHSIRAGKGKMRNRRYVSRKGPLIVYATEGAKLVKAFRNIPGVEIACVDRLNLLKLAPG 250

Query: 190 SKL----VLSKSAIEAL 202
             L    + +KSA E L
Sbjct: 251 GHLGRFIIWTKSAFEKL 267


>gi|124782963|gb|ABN14894.1| ribosomal protein L4 [Taenia asiatica]
          Length = 265

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 54/235 (22%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEVAYTGS---KMYVQKGTGRARHSS 77
              +  +L  V        R   +       +  +E   TG    ++   +G G  R   
Sbjct: 1   APMRSDVLNFVHDSLRKNSRQPYAVSSKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 60

Query: 78  KSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI-- 123
            +      GG  + P          +  + R  A+             ++     + I  
Sbjct: 61  GAFGNMCRGGHMYAPTKVWRRWHRRVNVQQRRFAMCSAIAATGVPALVMARGHRVDKIPE 120

Query: 124 --MVIDNLVSKECKTKYLVTRFR--------------------------ALDLSNALIID 155
             +V+   V K  KTK  V   +                             +     I 
Sbjct: 121 LPLVVSGNVEKIKKTKEAVKVLKKLRAWSDIQKVYQSKRNRAGRGKMRNRRHIMKRGPII 180

Query: 156 GCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
             + D     A RNIP I LL V+ +N+  +     +    + ++ A   L+  +
Sbjct: 181 VYKKDDGITRAFRNIPGITLLNVKYLNILKLAPGGHMGRFTIWTEGAFRTLDKLY 235


>gi|39946140|ref|XP_362607.1| 60s ribosomal protein L2 [Magnaporthe oryzae 70-15]
 gi|145019448|gb|EDK03676.1| 60s ribosomal protein L2 [Magnaporthe oryzae 70-15]
          Length = 371

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 74/265 (27%), Gaps = 60/265 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +++   DG+  G      ++F    +  I+ +V +  +  KR        +  +  +E
Sbjct: 5   PTVTIIGADGKASGATHPIPNVFTAPIRPDIVQQVHKGMAKNKRQPYAVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL--- 108
              TG    ++    G G  R    +       G+ F P          + +  +     
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHIKVNQGQKRFATT 124

Query: 109 -------------ALRHALSDKFCSNDIM----------------------VIDNLVSKE 133
                        A  H +S+      ++                      V       +
Sbjct: 125 SALAASAVAPLLLARGHRISNIPEVPLVIDSAAFSGAALAKTAAAVGLLNAVGAGADLDK 184

Query: 134 CKTK--------YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
            K           L  R         +I D      +     RNIP +    V  +N+  
Sbjct: 185 VKKSRAMRAGKGKLRGRRYRQRRGPLVIYDPATDGTDLVKGFRNIPGVETSSVYSLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEALEDRF 206
           +     L    V + +  +AL++ +
Sbjct: 245 LAPGGHLGRFIVWTSAGFKALDNIY 269


>gi|327311644|ref|YP_004338541.1| 50S ribosomal protein L4P [Thermoproteus uzoniensis 768-20]
 gi|326948123|gb|AEA13229.1| 50S ribosomal protein L4P [Thermoproteus uzoniensis 768-20]
          Length = 286

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 78/252 (30%), Gaps = 53/252 (21%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           ++ V  LDG   G I +    F    +  ++ R        K         +      + 
Sbjct: 31  KVPVYGLDGSAVGEIVLPPHFFE-PVRPDLIRRAFLSALSAKFQPKGVSPEAGRSHSCQS 89

Query: 58  AYTGSKMYVQKGTGRARHSS-KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
              G  +                     GG +A  P         + K+ R LA+R A++
Sbjct: 90  FGVGLGIARIPRYKGHLWPRGCFSPNTVGGRRAHPPKVEKKLREEINKRERRLAIRSAIA 149

Query: 116 -------DKFCSNDI-------MVIDNLVSKECKTKYLVTRF------------------ 143
                   K   + +       +V+ N + +  KT+ L                      
Sbjct: 150 ATAYLQLVKARGHVVEGLEQLPLVVANDIEQLDKTERLRRTLQALRVWPDVERAAERIRI 209

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCS 190
                    R      +L++     D     AARN+P +++  V+ ++V  +    +   
Sbjct: 210 RSGVGKMRGRRYKEPKSLLVVVSSPDAPLVRAARNLPGVDVAYVKSLSVLHLAPGGVPGR 269

Query: 191 KLVLSKSAIEAL 202
             + ++ +IEAL
Sbjct: 270 LTLWTQQSIEAL 281


>gi|253795617|ref|YP_003038713.1| putative 50S ribosomal subunit protein L4 [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253739925|gb|ACT34260.1| putative 50S ribosomal subunit protein L4 [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 187

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 85/183 (46%), Gaps = 16/183 (8%)

Query: 25  ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFR 84
             +P+  +++   RW + ++R   ++ K R++V+ +  K++ QKGTG ARHS+++V QF 
Sbjct: 12  GFEPRLDVVSAAWRWYTNKRRWHVAQIKTRADVSCSRRKLFKQKGTGGARHSTRAVCQF- 70

Query: 85  GGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR 144
            GG  F     +    L K+V++LALR AL+ K  + ++  ++ L + +      +    
Sbjct: 71  RGGGKFCARRTLLTPKLNKRVKTLALRSALALKLAAGELKFVEGLAAAKLTPSSFLVHAC 130

Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204
               +   +      + ++                 +    +L  S ++++K A  AL  
Sbjct: 131 PRSAAVVGLRAAGVANAHWSK---------------LCARSLLATSAVIVTKRAFLALAQ 175

Query: 205 RFK 207
           + K
Sbjct: 176 KLK 178


>gi|146080032|ref|XP_001463933.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068021|emb|CAM66307.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 436

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 78/261 (29%), Gaps = 61/261 (23%)

Query: 2   IE----LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSK 52
           ++      V +L         +   IF       +  + +   ++R Q++  +       
Sbjct: 86  MKQRIVAPVFDLSNNVTHTRELDPFIFGFYPETEEMAKNLSYWLVRCQNFSSKWDYEN-- 143

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
              E+     K +   G G AR   +       G ++    P  + +  +  K  S + R
Sbjct: 144 --REIWRKAKKNWPNTGMGMARVGDRKNHAHPWGAQSKPVKPWNLLMPTMDVKTWSKSNR 201

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--------------C 157
             ++ K     + +++ L   E  T+    +       +     G               
Sbjct: 202 MLVTLKMLQGKLQIVERLTLPEP-TQEAYLQLCRTMGWDVRHTGGGALFMDGGSRLTPSS 260

Query: 158 QLDRNFQL-AARNIPNINL------------------------------LPVQGINVYDI 186
           + DR F   +  N  N  +                              +P+   N YD 
Sbjct: 261 EYDRAFFFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKARTKGPKGQKNPIPINRFNAYDA 320

Query: 187 LRCSKLVLSKSAIEALE-DRF 206
           L    L++++ A+  LE + +
Sbjct: 321 LTHDTLIITEGALMQLEDEMY 341


>gi|320531961|ref|ZP_08032862.1| hypothetical protein HMPREF9057_00730 [Actinomyces sp. oral taxon
          171 str. F0337]
 gi|320135828|gb|EFW27875.1| hypothetical protein HMPREF9057_00730 [Actinomyces sp. oral taxon
          171 str. F0337]
          Length = 55

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 21/50 (42%)

Query: 3  ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK 52
           + V +  G+  G + +  ++F       ++ +V+  Q    R G   +K
Sbjct: 6  TVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATK 55


>gi|322497320|emb|CBZ32396.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 436

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 78/261 (29%), Gaps = 61/261 (23%)

Query: 2   IE----LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSK 52
           ++      V +L         +   IF       +  + +   ++R Q++  +       
Sbjct: 86  MKQRIVAPVFDLSNNVTHTRELDPFIFGFYPETEEMAKNLSYWLVRCQNFSSKWDYEN-- 143

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
              E+     K +   G G AR   +       G ++    P  + +  +  K  S + R
Sbjct: 144 --REIWRKAKKNWPNTGMGMARVGDRKNHAHPWGAQSKPVKPWNMLMPTMDVKTWSKSNR 201

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--------------C 157
             ++ K     + +++ L   E  T+    +       +     G               
Sbjct: 202 MLVTLKMLQGKLQIVERLTLPEP-TQEAYLQLCRTMGWDVRHTGGGALFMDGGSRLTPSS 260

Query: 158 QLDRNFQL-AARNIPNINL------------------------------LPVQGINVYDI 186
           + DR F   +  N  N  +                              +P+   N YD 
Sbjct: 261 EYDRAFFFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKARTKGPKGQKNPIPINRFNAYDA 320

Query: 187 LRCSKLVLSKSAIEALE-DRF 206
           L    L++++ A+  LE + +
Sbjct: 321 LTHDTLIITEGALMQLEDEMY 341


>gi|225435782|ref|XP_002285741.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 405

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 75/262 (28%), Gaps = 58/262 (22%)

Query: 2   IELSVRNLDGEDKG--VISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           + + V   D    G   + + + +     +  I+  V    S   R        +  +  
Sbjct: 9   VTVQVLKSDMATDGGNAVPLPD-VMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTS 67

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +    +  A
Sbjct: 68  AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYA 127

Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  A++            + I       +VI +      KT   +   +           
Sbjct: 128 VVSAIAASAVPSLVMARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQVGAYPDAEKA 187

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   +I           A RNIP + +  V+ +N+  +  
Sbjct: 188 KDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVERLNLLKLAP 247

Query: 189 CSKL----VLSKSAIEALEDRF 206
              L    + +KSAIE ++  +
Sbjct: 248 GGHLGRFIIWTKSAIEKVDSIY 269


>gi|322489327|emb|CBZ24587.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 436

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 77/261 (29%), Gaps = 61/261 (23%)

Query: 2   IE----LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSK 52
           ++      V +L         +   IF       +  + +   ++R Q++  +       
Sbjct: 86  MKQRIVAPVFDLANNVTHTRELDPFIFGFYPETEEMAKNLSYWLVRCQNFSSKWDYEN-- 143

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
              E+     K +   G G AR   +       G  +    P  + +  +  K  S + R
Sbjct: 144 --REIWRKAKKNWPNTGMGMARVGDRKNHAHPWGAHSKPVKPWNMLMPTMDVKTWSKSNR 201

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--------------C 157
             ++ K     + +++ L   E  T+    +       +     G               
Sbjct: 202 MLVTLKMLQGKLQIVERLTLPEP-TQEAYLQLCRTMGWDVRHKGGGALFMDGGSRLTPSS 260

Query: 158 QLDRNFQL-AARNIPNINL------------------------------LPVQGINVYDI 186
           + DR F   +  N  N  +                              +P+   N YD 
Sbjct: 261 EYDRAFFFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKARTKGPKGQKNPIPINRFNAYDA 320

Query: 187 LRCSKLVLSKSAIEALE-DRF 206
           L    L++++ A+  LE + +
Sbjct: 321 LTHDTLIITEGALMQLEDEMY 341


>gi|213646525|ref|ZP_03376578.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 72

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 135 KTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
           KTK L  + + + L + LII G +LD N  LAARN+  +++    GI+   ++   K+V+
Sbjct: 1   KTKLLAQKLKDMALEDVLIITG-ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVM 59

Query: 195 SKSAIEALEDRF 206
           +  A++ +E+  
Sbjct: 60  TADAVKQVEEML 71


>gi|71403432|ref|XP_804516.1| 60S ribosomal protein L4 [Trypanosoma cruzi strain CL Brener]
 gi|70867532|gb|EAN82665.1| 60S ribosomal protein L4, putative [Trypanosoma cruzi]
          Length = 374

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 78/253 (30%), Gaps = 55/253 (21%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57
           +SV +  + +  G   +   +F    +  I+  V    +   R   + ++       +E 
Sbjct: 7   VSVYSASEDKVVGTCPLP-AVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ V    KTK  +   +A+   + +      
Sbjct: 126 ALAASSVPALVMSRGHKIENVAEVPLVVEDAVQGYEKTKEAMAFLKAIGAVDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D     A RNI  ++L  V  +N+  +       
Sbjct: 186 REIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNALNLLHLAPGGHVG 245

Query: 192 --LVLSKSAIEAL 202
             +V +K A E L
Sbjct: 246 RFVVWTKGAFEKL 258


>gi|224138574|ref|XP_002322848.1| predicted protein [Populus trichocarpa]
 gi|222867478|gb|EEF04609.1| predicted protein [Populus trichocarpa]
          Length = 407

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 70/249 (28%), Gaps = 56/249 (22%)

Query: 13  DKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KM 64
               +++ + +     +  I+  V    S   R   + SK       +E   TG    ++
Sbjct: 24  SAATVALPD-VMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRI 82

Query: 65  YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH---------- 112
               G G  R    +      GG+ F P          +    +  A+            
Sbjct: 83  PRVPGGGTHRAGQGAYGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSL 142

Query: 113 ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------------------ 144
            ++       +    ++I +      KT   +   +                        
Sbjct: 143 VMARGHRVESVPEMPLIISDSAESIEKTSTAIKVLKEIGAFPDAEKAKDSHAIRPGKGKM 202

Query: 145 ---ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKS 197
                      +I           A RNIP + +  V+ +N+  +         ++ +KS
Sbjct: 203 RNRRYISRKGPLIVYGTEGAKMVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKS 262

Query: 198 AIEALEDRF 206
           AIE L+  +
Sbjct: 263 AIEKLDSIY 271


>gi|226471654|emb|CAX70908.1| putative ribosomal protein L4 [Schistosoma japonicum]
          Length = 232

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 59/219 (26%), Gaps = 50/219 (22%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V  ++G   G       +F    +  +L  V        R        +  +  +E  
Sbjct: 8   VNVYGVNGTSTGATIKMPAVFTTPFRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG  + P          +  + R  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN--------- 150
                     ++     + +    +V+   V    KTK  V   +A+             
Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWPDIQKVYNSQ 187

Query: 151 -----------------ALIIDGCQLDRNFQLAARNIPN 172
                               I   + D     A RNIP 
Sbjct: 188 RFRAGKGKMRNRRRIQKRGPIIIYKKDDGISRAFRNIPG 226


>gi|194389956|dbj|BAG60494.1| unnamed protein product [Homo sapiens]
          Length = 151

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 10/119 (8%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHA 113
             TG    ++   +G G  R    +      GG+ F P                   H 
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKLENHV 125


>gi|157865790|ref|XP_001681602.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124899|emb|CAJ03077.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 436

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 77/261 (29%), Gaps = 61/261 (23%)

Query: 2   IE----LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSK 52
           ++      V +L         +   IF       +  + +   ++R Q++  +       
Sbjct: 86  MKQRIVAPVFDLANNVTHTRELDPFIFGFYPETEEMAKNLSYWLVRCQNFSSKWDYEN-- 143

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
              E+     K +   G G AR   +       G  +    P  + +  +  K  S + R
Sbjct: 144 --REIWRKAKKNWPNTGMGMARVGDRKNHAHPWGAHSKPVKPWNLLMPTMDVKTWSKSNR 201

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG--------------C 157
             ++ K     + +++ L   E  T+    +       +     G               
Sbjct: 202 MLVTLKMLQGKLQIVERLTLPEP-TQEAYLQLCRTMGWDVRHKGGGALFMDGGSRLTPSS 260

Query: 158 QLDRNFQL-AARNIPNINL------------------------------LPVQGINVYDI 186
           + DR F   +  N  N  +                              +P+   N YD 
Sbjct: 261 EYDRAFFFGSFFNGRNKLVRPTLLCDEPYDYNRTSSKARTKGPKGQKNPIPINRFNAYDA 320

Query: 187 LRCSKLVLSKSAIEALE-DRF 206
           L    L++++ A+  LE + +
Sbjct: 321 LTHDTLIITEGALLQLEDEMY 341


>gi|84468414|dbj|BAE71290.1| putative 60S ribosomal protein L1 [Trifolium pratense]
          Length = 406

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 74/261 (28%), Gaps = 56/261 (21%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55
           + +   + D       ++   D+     +  I+  V    S   R   +       +  +
Sbjct: 10  VTVQTLDSDMATDSPNTLPIPDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQTSA 69

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
           E   TG    ++    G G  R    +      GG+ F P          +    +  A+
Sbjct: 70  ESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAV 129

Query: 111 RHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFR------------ 144
             A++            + I       +V+ +      KTK  +   +            
Sbjct: 130 VSAIAASAVPSLVLARGHRIEAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAK 189

Query: 145 ---------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                                  +I           A RNIP + +  V+ +N+  +   
Sbjct: 190 DSHGIRPGKGKMRNRRYISRKGPLIVYGTDGAKAVKAFRNIPGVEIANVERLNLLKLAPG 249

Query: 190 SK----LVLSKSAIEALEDRF 206
                 +V +KSA E L+  +
Sbjct: 250 GHLGRFVVWTKSAFEKLDSIY 270


>gi|322821554|gb|EFZ27842.1| 60S ribosomal protein L4, putative [Trypanosoma cruzi]
          Length = 374

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 78/253 (30%), Gaps = 55/253 (21%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57
           +SV +  + +  G   +   +F    +  I+  V    +   R   + ++       +E 
Sbjct: 7   VSVYSASEDKVVGTCPLP-AVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ V    KTK  +   +A+   + +      
Sbjct: 126 ALAASSVPALVMSRGHKIENVAEVPLVVEDAVQGYEKTKEAMAFLKAIGAVDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D     A RNI  ++L  V  +N+  +       
Sbjct: 186 REIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNALNLLHLAPGGHVG 245

Query: 192 --LVLSKSAIEAL 202
             ++ +K A E L
Sbjct: 246 RFVIWTKGAFEKL 258


>gi|289811596|ref|ZP_06542225.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 98

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    + ++V
Sbjct: 1   RQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIV 60

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQ 164
           ++    +  KTK L  + + + L + LII G +LD N  
Sbjct: 61  VEKFSVEAPKTKLLAQKLKDMALEDVLIITG-ELDENLF 98


>gi|224144519|ref|XP_002336155.1| predicted protein [Populus trichocarpa]
 gi|222874555|gb|EEF11686.1| predicted protein [Populus trichocarpa]
          Length = 408

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 73/254 (28%), Gaps = 56/254 (22%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS 62
           ++  +    +++ + +     +  I+  V    S   R   + SK       +E   TG 
Sbjct: 20  DMATDSVTTVALPD-VMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWGTGR 78

Query: 63  ---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH----- 112
              ++    G G  R    +      GG+ F P          +    +  A+       
Sbjct: 79  AVSRIPRVSGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQKRYAVVSAIAAS 138

Query: 113 -----ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------------- 144
                 ++       +    +VI +      KT   +   +                   
Sbjct: 139 AIPSLVMARGHRVESVPEMPLVISDSAESIEKTSTAIKVLKEIGAYPDAEKAKDSQAIRA 198

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----L 192
                           +I           A RNIP + +  V+ +N+  +         +
Sbjct: 199 GKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVERLNLLRLAPGGHLGRFV 258

Query: 193 VLSKSAIEALEDRF 206
           + +KSAIE L+  +
Sbjct: 259 IWTKSAIEKLDSIY 272


>gi|193083865|gb|ACF09546.1| ribosomal protein L4 [uncultured marine group II euryarchaeote
           KM3-85-F5]
          Length = 292

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 75/265 (28%), Gaps = 75/265 (28%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSK------------SKGRSEV 57
           DG+    +++ E  F+ + +  I+   +      +R                  K   E 
Sbjct: 32  DGKA---VTLPEA-FSSEVRPDIIRSAVHASRANRRQSYGHREHDGKRAPQPGMKHSVEW 87

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL--- 114
              G  +         R  +++     G       V       L  K R++A   A+   
Sbjct: 88  WGKGRGVSRIMRKTGQRTGAQNPHTRGGRRAHGPKVDKDWSQKLNSKARTVARNAAIAAS 147

Query: 115 -------SDKFCSND-----IMVIDNLVSK--------------ECKTKYLVTRFR---- 144
                  S      +     I++ D + S+              +  T+  V        
Sbjct: 148 CDPELVSSRGHRFEEGTRFPIIIDDYVESRGGTDEKYAIESIPLQYSTRKFVAMMEALGL 207

Query: 145 ----------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
                                     +   ++           AARN+P ++++  + ++
Sbjct: 208 ADDLVRSKQGRTIRAGKGTMRSRKYRTPRSLLLVVSQKDGLDKAARNVPGVDVVTAKDLS 267

Query: 183 VYDILRCSK----LVLSKSAIEALE 203
             D+          + +K+AIEALE
Sbjct: 268 AEDLAPGGDPGRLTIWTKAAIEALE 292


>gi|224068640|ref|XP_002326163.1| predicted protein [Populus trichocarpa]
 gi|118486971|gb|ABK95318.1| unknown [Populus trichocarpa]
 gi|222833356|gb|EEE71833.1| predicted protein [Populus trichocarpa]
          Length = 408

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 73/254 (28%), Gaps = 56/254 (22%)

Query: 8   NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS 62
           ++  +    +++ + +     +  I+  V    S   R   + SK       +E   TG 
Sbjct: 20  DMATDSVTTVALPD-VMKASIRPDIVNYVHSNISKNSRQPYAVSKKAGHQTSAESWGTGR 78

Query: 63  ---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH----- 112
              ++    G G  R    +      GG+ F P          +    +  A+       
Sbjct: 79  AVSRIPRVSGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRKINVNQKRYAVVSAIAAS 138

Query: 113 -----ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------------- 144
                 ++       +    +VI +      KT   +   +                   
Sbjct: 139 AIPSLVMARGHRVESVPEMPLVISDSAESIEKTSTAIKVLKEIGAYPDAEKAKDSQAIRA 198

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----L 192
                           +I           A RNIP + +  V+ +N+  +         +
Sbjct: 199 GKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVERLNLLRLAPGGHLGRFV 258

Query: 193 VLSKSAIEALEDRF 206
           + +KSAIE L+  +
Sbjct: 259 IWTKSAIEKLDSIY 272


>gi|226467133|emb|CAX76047.1| putative ribosomal protein L4 [Schistosoma japonicum]
          Length = 192

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 24/171 (14%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           ++V  ++G   G       +F    +  +L  V        R        +  +  +E  
Sbjct: 8   VNVYGVNGTSTGATIKMPAVFTTPLRLDLLNFVHDQMRKNSRQPYAVSTKAGHQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G  R    +      GG  + P          +  + R  A+   
Sbjct: 68  GTGRAVARIPRVRGGGTHRSGQGAYGNMCRGGHMYAPTKTMRRWHRKINIQQRRYAICSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150
                     ++     + +    +V+   V    KTK  V   +A+    
Sbjct: 128 IAATGVPSLVMARGHRVDRVPELPLVLSKEVESLKKTKDAVKVLKAIRAWP 178


>gi|296204120|ref|XP_002749190.1| PREDICTED: 60S ribosomal protein L4-like [Callithrix jacchus]
          Length = 120

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 12/110 (10%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  GE  G  +++   +F    +  I+  V        R        +  +  +E 
Sbjct: 8   ISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLCKNNRQPYAVSELAGHQTSAES 66

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALP 102
             TG    ++   +G G  R    +      GG+ F P          + 
Sbjct: 67  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRHWHRRVN 116


>gi|313221401|emb|CBY32154.1| unnamed protein product [Oikopleura dioica]
 gi|313240719|emb|CBY33037.1| unnamed protein product [Oikopleura dioica]
          Length = 231

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 24/188 (12%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           +SV + DG+          +F    +  ++  V    S   R        +  +  +E  
Sbjct: 8   VSVYSRDGKPVSEFVNLPAVFKAPIRTDVVKFVHTNISKNARQPYSVSRVAGKQTSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G +R  + +      GG+ F P          +    R  A    
Sbjct: 68  GTGRAVARIPRVRGGGTSRSGAAAFGNMCRGGRMFNPNKTWRNWHRRVNITQRRFATVSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL 159
                    A++     +++    +V++N V    KTK  V   +++     +       
Sbjct: 128 IAATGIPALAMAKGHFISNVPEFPLVLENSVESLKKTKEAVKTLKSVGALEDVKSFLPGD 187

Query: 160 DRNFQLAA 167
           +     A+
Sbjct: 188 NPRTWCAS 195


>gi|159040902|ref|YP_001540154.1| 50S ribosomal protein L4P [Caldivirga maquilingensis IC-167]
 gi|157919737|gb|ABW01164.1| ribosomal protein L4/L1e [Caldivirga maquilingensis IC-167]
          Length = 278

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 77/258 (29%), Gaps = 54/258 (20%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +  + NL+GE  G + + E  F    +  ++ R +      +         +  +  + 
Sbjct: 17  AKAKLLNLNGEAVGEVDLPEH-FKTPIRLDLIRRAVLSALTARLQPKGTDKEAGLRTSAV 75

Query: 57  VAYTGSKMYVQKGTGRARHSSKS-VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL 114
              TG  +                      G +A  P         + +K R LA+R A+
Sbjct: 76  SFGTGLGIARVPRIKGNMWPRARIAPNVVKGRRAHPPKVEKRLWERINRKERLLAIRSAI 135

Query: 115 SDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFR---------------- 144
           +       IM              V+ N      K   +   F+                
Sbjct: 136 AATAVRELIMARGHLVGDVKAIPLVVVNEFEGISKAADVKNVFKALGVWSDVVKAQGNVR 195

Query: 145 -----------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRC 189
                            ++++   + D     A RN+  ++++ V  +++  +    +  
Sbjct: 196 IRAGRGKMRGRRYKEPKSILVVVSRKDAPVIRAVRNMAGVDVVYVDNLSILHLAPGGVPG 255

Query: 190 SKLVLSKSAIEAL-EDRF 206
              + ++ AIE L  ++ 
Sbjct: 256 RLTLWTQGAIERLSNEKL 273


>gi|18313002|ref|NP_559669.1| 50S ribosomal protein L4P [Pyrobaculum aerophilum str. IM2]
 gi|46396650|sp|Q8ZW51|RL4_PYRAE RecName: Full=50S ribosomal protein L4P
 gi|18160503|gb|AAL63851.1| ribosomal protein L4 [Pyrobaculum aerophilum str. IM2]
          Length = 283

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 70/253 (27%), Gaps = 55/253 (21%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +L V  +DG     I      F    +  ++ R        +         +  +   E 
Sbjct: 28  KLKVYGIDGAYVADIEAPLH-FLEPIRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCES 86

Query: 58  AYTGSKMYVQKGTGRARHSS-KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL- 114
              G  +        +           RGG +A  P         + KK + LA+R A+ 
Sbjct: 87  FGVGLGIARIPRYKGSLWPRGCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIA 146

Query: 115 -----SDKFCSND----------IMVIDNLVSKECK-TKYLVTRFRALDL---------- 148
                S                 ++V D       K  K L                   
Sbjct: 147 ATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPDVERAAEGVKI 206

Query: 149 --------------SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL-- 192
                           ++++    L+     A RN P ++++ V  +N+  +L    +  
Sbjct: 207 RAGKGKMRGRRYKEPKSVLVVVSDLNAPLIAAVRNFPGVDVVAVNNLNIL-VLAPGGVPG 265

Query: 193 ---VLSKSAIEAL 202
              + +  A+E L
Sbjct: 266 RLTLWTAPAVEKL 278


>gi|154283117|ref|XP_001542354.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150410534|gb|EDN05922.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 142

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 84  RGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND-IMVIDNLVSKECKTKYLVTR 142
           RGGG A GP P      LPKKV  LA R ALS ++     I+V DN+   +  + + +T 
Sbjct: 3   RGGGVAHGPHPRDFSTGLPKKVYDLAWRTALSYRYRRGQLIIVNDNITFPQEVSPHWLTE 62

Query: 143 FRALDLSNAL----IIDGCQLDRNFQLAARNI-PNINLLPVQGINVYDILRCSKLVLSKS 197
               +         +I           A   I  +  +L  + ++V D+L   +L++ K+
Sbjct: 63  VFEKNQWGKYFGRSLIITEVKKERLFKAVAQIGQHARVLDREDVDVKDLLETGRLIVEKT 122

Query: 198 AIEA 201
           A++ 
Sbjct: 123 ALDR 126


>gi|156937756|ref|YP_001435552.1| 50S ribosomal protein L4P [Ignicoccus hospitalis KIN4/I]
 gi|156566740|gb|ABU82145.1| LSU ribosomal protein L4P [Ignicoccus hospitalis KIN4/I]
          Length = 271

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 52/251 (20%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVAYT 60
           V +L+G     I +   +F+L  ++ ++ R        +         +  +  +E    
Sbjct: 21  VWDLNGNPVEEIELPP-VFSLPVRKDLIRRAFLSAFTARLQPKGRDPMAGKRTTAESLGP 79

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRS------------- 107
           G  +           ++   S   GG  AF P P   +H    K                
Sbjct: 80  GHGLARVPRIKGTSRAAFVNSAR-GGHLAFPPRPDKKLHEEINKKERLIAIASALAATSR 138

Query: 108 ----LALRHALSDKFCSNDIMVIDNLVSKECK------------------------TKYL 139
                A  HA+S       I+V D    ++ K                        +   
Sbjct: 139 RELVEARGHAISSVKEVPLIVVDDIENIEKAKDLREAFVKLGVIDDVERASEWRQRSTKG 198

Query: 140 VTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSKLVLS 195
             R R        +I     +   + AA   P  +++ V  ++V  +    +     ++S
Sbjct: 199 KMRGRRYKKRVGPLIIVSTEEAPVRRAASAFPGTDVVAVNLLSVKHLAPGGVPGRLTIIS 258

Query: 196 KSAIEALEDRF 206
           K A+E +  R 
Sbjct: 259 KKALEEIGKRL 269


>gi|225439761|ref|XP_002274975.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 406

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 73/262 (27%), Gaps = 58/262 (22%)

Query: 2   IELSVRNLDGEDKG--VISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           + + V   D    G   + + + +     +  I+  V    S   R        +  +  
Sbjct: 10  VTVQVLKSDMATDGGNAVPLPD-VMKASIRPDIVTFVHSNISKNSRQPYAVSRRAGHQTS 68

Query: 55  SEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLA 109
           +E   TG    ++    G G  R    +      GG+ F P          +    +  A
Sbjct: 69  AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYA 128

Query: 110 LRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA---------- 145
           +  A++            + I       +VI +      KT   +   +           
Sbjct: 129 VVSAIAASAIPSLVMARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQVGAYPDAEKA 188

Query: 146 -----------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                                   +I           A RNIP + +  V  +N+  +  
Sbjct: 189 KDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVDRLNLLKLAP 248

Query: 189 CSK----LVLSKSAIEALEDRF 206
                  ++ +KSA E L+  +
Sbjct: 249 GGHLGRFVIWTKSAFEKLDSIY 270


>gi|217071858|gb|ACJ84289.1| unknown [Medicago truncatula]
          Length = 408

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 68/241 (28%), Gaps = 55/241 (22%)

Query: 21  EDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEVAYTGS---KMYVQKGTGR 72
            D+     +  I+  V    S   R   +       +  +E   TG    ++    G G 
Sbjct: 32  PDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGT 91

Query: 73  ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSD-------KFCSNDI 123
            R    +      GG+ F P          +    +  A+  A++            + I
Sbjct: 92  HRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRI 151

Query: 124 -------MVIDNLVSKECKTKYLVTRFRA---------------------------LDLS 149
                  +V+ +      KTK  +   +                                
Sbjct: 152 ETVPEFPLVVGDAAEGVEKTKEAIKVLKQVGAFADAEKAKDSLGIRPGKGKMRNRRYISR 211

Query: 150 NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDR 205
              +I           A RNIP + +  V+ +N+  +         ++ +KSA E L+  
Sbjct: 212 KGPLIVYGTDGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSI 271

Query: 206 F 206
           +
Sbjct: 272 Y 272


>gi|213584601|ref|ZP_03366427.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 95

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 45/92 (48%)

Query: 66  VQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMV 125
            QKGTGRAR  S     +R GG  F   P      + KK+   AL+  LS+    + ++V
Sbjct: 1   RQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIV 60

Query: 126 IDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
           ++    +  KTK L  + + + L + LII G 
Sbjct: 61  VEKFSVEAPKTKLLAQKLKDMALEDVLIITGE 92


>gi|175378485|gb|ACB72434.1| ribosomal protein L4 [Xenopus muelleri]
          Length = 225

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 58/207 (28%), Gaps = 50/207 (24%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVAYTGS---KMYVQKGTGRARHSS 77
              +  I+  V        R   + SK       +E   TG    ++   +G G  R   
Sbjct: 2   APIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 61

Query: 78  KSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR----------HALSDKFCSNDI-- 123
            +      GG+ F P          +    +  A+             +S      +I  
Sbjct: 62  GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPE 121

Query: 124 --MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC------------------------ 157
             +V+++ V    KTK  V   + L   N +                             
Sbjct: 122 VPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCV 181

Query: 158 --QLDRNFQLAARNIPNINLLPVQGIN 182
               +     A RNIP I LL V  +N
Sbjct: 182 IYNENNGLVKAFRNIPGITLLNVSKLN 208


>gi|322488672|emb|CBZ23919.1| putative ribosomal protein L1a [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 434

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 76/253 (30%), Gaps = 55/253 (21%)

Query: 4   LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
           +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 68  VSVYSASSDSVVGTCPLP-AVFTAPIRNDIVQFVHTNMAKNSRQAYAVNRLSGMNHSAHS 126

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 127 WGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 186

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S     +++    +V+++ +    KTK  +   +A+   + +      
Sbjct: 187 ALAASSVPSLVMSRGHKISNVPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDS 246

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     +     A RNI  ++L  V  +N+  +       
Sbjct: 247 REIRAGRGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVSALNLLHLAPGGHVG 306

Query: 192 --LVLSKSAIEAL 202
             ++ +KSA E L
Sbjct: 307 RFVIWTKSAFEQL 319


>gi|108743789|gb|ABG02203.1| IP15855p [Drosophila melanogaster]
          Length = 233

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 62/219 (28%), Gaps = 51/219 (23%)

Query: 4   LSVRNLDGEDKGVISV-SEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV     E     ++    +F    +  ++  V +      R   +       +  +E 
Sbjct: 10  VSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    R  AL  
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVS 129

Query: 113 AL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLS--------- 149
           A+          S     + +    +V+ + V K  KTK  V   R L +          
Sbjct: 130 AIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKS 189

Query: 150 -----------------NALIIDGCQLDRNFQLAARNIP 171
                                +     D   + A RNIP
Sbjct: 190 QRFRAGRGTMRDRRRIARRGPLVVYDKDEGLRKAFRNIP 228


>gi|14716980|emb|CAC44155.1| putative ribosomal protein L4B protein [Oncorhynchus mykiss]
          Length = 141

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 10/118 (8%)

Query: 10  DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS-- 62
            GE  G       +F    +  I+  V        R        +  +  +E   TG   
Sbjct: 2   KGESSGKNVGMPAVFKAPIRPDIVNFVHTNMRKNSRQPYAVSGLAGHQTSAESWGTGRAV 61

Query: 63  -KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDK 117
            ++   +G G  R    +      GG+ F P          +    +  A+  AL+ +
Sbjct: 62  ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHPRINTTQKRYAICSALAAR 119


>gi|305662571|ref|YP_003858859.1| LSU ribosomal protein L4P [Ignisphaera aggregans DSM 17230]
 gi|304377140|gb|ADM26979.1| LSU ribosomal protein L4P [Ignisphaera aggregans DSM 17230]
          Length = 273

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 55/254 (21%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVAY 59
            + ++DG   GVI +   +F+L  +  ++ R +      +         +  +   E   
Sbjct: 18  PLFDIDGNLVGVIDLPL-VFSLPIRVDVIRRAVHSALTARIQVKARDPLAGKRRVGESWG 76

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKF 118
            G  +         R  +       GG + F P         + KK    A+  ALS   
Sbjct: 77  IGYSVARVPRLDNGR--AVFAPNVVGGRRQFAPTILKKIHEEINKKEMRFAIMSALSALA 134

Query: 119 CSNDI---------------MVIDNLVSKECKTKYLVTRF-------------------- 143
               +               +VI N   +   TK L                        
Sbjct: 135 SKEFVLRRGYELPPNIELLPIVIVNSFEEISSTKELRDLLEKIGLWKNIERAQQRTRIRA 194

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC---SKL- 192
                  R      +L+            A RN+P ++      +N+  +       +L 
Sbjct: 195 GKGKRRGRRYVTPKSLLFIVSNTRAPIIKAIRNLPGVDYSTPDNLNILTLAPGGMPGRLA 254

Query: 193 VLSKSAIEALEDRF 206
           ++S+ A+E ++ ++
Sbjct: 255 IISQKALELIDQKY 268


>gi|238608211|ref|XP_002397173.1| hypothetical protein MPER_02448 [Moniliophthora perniciosa FA553]
 gi|215471110|gb|EEB98103.1| hypothetical protein MPER_02448 [Moniliophthora perniciosa FA553]
          Length = 249

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 72/231 (31%), Gaps = 56/231 (24%)

Query: 31  GILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQ 82
            ++A+V +  +  KR        +  +  +E   TG    ++    G G  R    +   
Sbjct: 2   DVVAQVHKSIAKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTHRSGQAAFGN 61

Query: 83  FRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFC--------------SNDIMVI 126
              GG+ F P          + +  R  A+  AL+                      +VI
Sbjct: 62  MCRGGRMFAPTKTWRKWHVKVNQNQRRFAVVSALAASALPSLVLARGHHIEQIEEAPLVI 121

Query: 127 DNLVSKECKTKYLVTRFR---------------------------ALDLSNALIIDGCQL 159
            N V    KTK  VT  +                                   +I   + 
Sbjct: 122 SNEVESFKKTKEAVTLLKALHAYADVVKVSNSHKLRAGKGKMRNRRHRQCRGPLIVYNE- 180

Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
           D     A RN+P + L+ V+ +++  +         ++ ++ A   L++ F
Sbjct: 181 DDGIVRAFRNLPGVELVNVRRLDLLQLAPGGHLGRFVIWTEGAFGLLDEVF 231


>gi|303390282|ref|XP_003073372.1| 60S ribosomal protein L4 [Encephalitozoon intestinalis ATCC 50506]
 gi|303302518|gb|ADM12012.1| 60S ribosomal protein L4 [Encephalitozoon intestinalis ATCC 50506]
          Length = 335

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 86/265 (32%), Gaps = 65/265 (24%)

Query: 2   IE--LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG----- 53
           ++  ++   +DG   K  + + E +F+   +Q ++ +       + R   + SK      
Sbjct: 1   MKQQINCYEVDGVTVKKTLDLPE-VFSTPIRQDLVLKTYSIYRMKTRQPYAVSKYAGMQH 59

Query: 54  RSEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVR---- 106
            +E   TG  +      KG G  R    + + F   G+   P       A          
Sbjct: 60  SAESWGTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKI 119

Query: 107 --------------SLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR-------- 144
                           A  H +S+      I+V D+ +SK  KTK  +   +        
Sbjct: 120 AEAMAVAASAQTSLVEARGHRVSN-VKMLPIIVSDD-ISKAKKTKDALQILKDLNMKEEL 177

Query: 145 -------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                     ++I   +      L  RNI  ++ + +  +++ +
Sbjct: 178 KRIEKSRGVRCGKGKMRNRRYTQRKGILIVHGESSEL--LGFRNIRGVDQMSIDSLDLLE 235

Query: 186 I----LRCSKLVLSKSAIEALEDRF 206
           +    L    ++ ++SA E L+  F
Sbjct: 236 LAPGGLPGRLIIWTESAFEKLDKIF 260


>gi|297527409|ref|YP_003669433.1| 50S ribosomal protein L4P [Staphylothermus hellenicus DSM 12710]
 gi|297256325|gb|ADI32534.1| 50S ribosomal protein L4P [Staphylothermus hellenicus DSM 12710]
          Length = 271

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 75/252 (29%), Gaps = 54/252 (21%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYT 60
           V +  GE    I +   IF+L  ++ ++ R                  +  +  +     
Sbjct: 18  VFSSAGEKVEEIILP-TIFSLPVRKDLIRRAFLAAFTSMLQPKGRDPLAGKRTTARSWGV 76

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
           G  +        +R +  S +  RGG  AF P P   +H    K        +       
Sbjct: 77  GRGLARVPRLPNSRAAFISFA--RGGHAAFPPRPDERIHERINKREKAYAVASAIAATAK 134

Query: 121 NDIM---------------VIDNLVSKECKTKYLVTRF---------------------- 143
            +++               ++D++  K  K +                            
Sbjct: 135 VELVRERGHIFQQDKLPVVLLDDVEEKISKAREAKELLVKLGLWSDIVRSYERIRIRAGR 194

Query: 144 -----RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSKLVL 194
                R      +++      ++ F  A RN P +++     + +  +    +     V 
Sbjct: 195 GKMRGRRYVEPRSILFVVTSYNKPFAKAVRNFPGVDVATPNNLGILHLAPGGVPGRLTVF 254

Query: 195 SKSAIEALEDRF 206
           ++SA+E +  ++
Sbjct: 255 TRSALEDISSKY 266


>gi|46396651|sp|Q975I2|RL4_SULTO RecName: Full=50S ribosomal protein L4P
          Length = 266

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 52/254 (20%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEV 57
           +  + +L G     I +    F+   ++ ++ RV   +  +          +  +  +  
Sbjct: 9   KTHIFDLKGNKVEEIELP-IFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALS 67

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSD 116
                 +           ++       GG  AF P      V  + KK + LA+  ALS 
Sbjct: 68  FGINLGLARVPRVKTTGEAAL-APNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSA 126

Query: 117 KFCSNDI-------------MVIDNLVSKECKTKYLVTRF-------------------- 143
               N +             +++ + ++K  KTK ++                       
Sbjct: 127 TANMNFVKNRGHVFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRS 186

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----L 192
                  R        +    + +  F  AA NIP ++++    ++V  +          
Sbjct: 187 GKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLAPGGHPGRLT 246

Query: 193 VLSKSAIEALEDRF 206
           + +KS+I+ L  RF
Sbjct: 247 IYTKSSIDVLRKRF 260


>gi|321398509|emb|CBZ08868.1| putative ribosomal protein L1a [Leishmania infantum JPCM5]
          Length = 373

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 78/257 (30%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
           +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 7   VSVYSASSDSVVGTCPLP-AVFTAPIRNDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S     +++    +V+++ +    KTK  +   +A+   + +      
Sbjct: 126 ALAASSVPSLVMSRGHRIDNVPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     +     A RNI  ++L  V  +N+  +       
Sbjct: 186 REIRAGCGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVSALNLLHLAPGGHVG 245

Query: 192 --LVLSKSAIEALEDRF 206
             ++ +KSA E L+  F
Sbjct: 246 RFVIWTKSAFEQLDKIF 262


>gi|269863801|ref|XP_002651350.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220064689|gb|EED42707.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 252

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 79/252 (31%), Gaps = 54/252 (21%)

Query: 2   IELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
           + ++V   DG+   G I+    +F ++ +  ++ +     +   R        +  +  +
Sbjct: 1   MNVNVYGKDGKTVVGEIA-KPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHSA 59

Query: 56  EVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH---------ALPK 103
           E   TG  +      KG+G  R    + + F   G+   P                 L  
Sbjct: 60  ESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLVT 119

Query: 104 KVRSLALRHALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
            +   A  HA   +   + I       +V+ + +S   KT+      + ++L   L    
Sbjct: 120 AMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKVR 179

Query: 157 CQL------------------------DRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                                      D     A  NI  + L  V  +N+  +     L
Sbjct: 180 ESKTITCGKGKFRGRRYSKRTGLLIVHDNAALSAFSNIEGVELANVNSLNLLRLCPGGHL 239

Query: 193 ----VLSKSAIE 200
               + ++SA++
Sbjct: 240 GRLILWTESALK 251


>gi|313211779|emb|CBY15952.1| unnamed protein product [Oikopleura dioica]
          Length = 213

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 24/165 (14%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEVA 58
           +SV + DG+          +F    +  ++  V    S   R   S S+       +E  
Sbjct: 8   VSVYSRDGKPVSEFVNLPAVFKAPIRSDVVQFVHTNISKNARQPYSVSRVAGEETSAESW 67

Query: 59  YTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH- 112
            TG    ++   +G G +R  + +      GG+ F P          +    R  A    
Sbjct: 68  GTGRAVARIPRVRGGGTSRSGAAAFGNMCRGGRMFNPNKTWRNWHRRVNITQRRFATVSA 127

Query: 113 ---------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR 144
                    A++     +++    +V++N V    KTK  V   +
Sbjct: 128 IAATGIPVLAMAKGHFISNVPEFPLVLENSVESLKKTKEAVKTLK 172


>gi|321398507|emb|CAM69676.2| putative ribosomal protein L1a [Leishmania infantum JPCM5]
 gi|321398508|emb|CBZ08867.1| putative ribosomal protein L1a [Leishmania infantum JPCM5]
 gi|322500764|emb|CBZ35841.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 373

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 78/257 (30%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
           +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 7   VSVYSASSDSVVGTCPLP-AVFTAPIRNDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S     +++    +V+++ +    KTK  +   +A+   + +      
Sbjct: 126 ALAASSVPSLVMSRGHRIDNVPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     +     A RNI  ++L  V  +N+  +       
Sbjct: 186 REIRAGRGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVSALNLLHLAPGGHVG 245

Query: 192 --LVLSKSAIEALEDRF 206
             ++ +KSA E L+  F
Sbjct: 246 RFVIWTKSAFEQLDKIF 262


>gi|145490309|ref|XP_001431155.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|145545624|ref|XP_001458496.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74830156|emb|CAI39016.1| telomerase, putative [Paramecium tetraurelia]
 gi|74830167|emb|CAI39018.1| ribosomal protein L4, putative [Paramecium tetraurelia]
 gi|124398258|emb|CAK63757.1| unnamed protein product [Paramecium tetraurelia]
 gi|124426316|emb|CAK91099.1| unnamed protein product [Paramecium tetraurelia]
          Length = 406

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 80/263 (30%), Gaps = 63/263 (23%)

Query: 4   LSVRNLDGEDK---GVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRS 55
           +SV + D   K     I +   +F    +  I++ V    +  +R   +       +  +
Sbjct: 7   VSVFSADDSTKVTAKHIPLP-AVFQTPIRPDIVSFVHTNIAKNRRQAHAVNPQAGMQHSA 65

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL-- 108
           E   TG    ++    G+G  R    +       G+   P+         +  K +    
Sbjct: 66  ESWGTGRAVARIPRVSGSGTHRSGQAAFGNQCRKGRMSLPIKVWRRWHRRVNIKQKRHAA 125

Query: 109 --------------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA--------- 145
                         A  H +S       ++V D + S E KT   +   +          
Sbjct: 126 ATAVAATGIVPLVLARGHRISQ-VPQIPLVVEDKIESYE-KTTDALNFLKRFGAFEDVQK 183

Query: 146 ------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                               +    ++     +     A RN+P + ++ V  +N+  + 
Sbjct: 184 VVSTKVVRAGISKQRGKKYRVRKGPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLA 243

Query: 188 RCSK----LVLSKSAIEALEDRF 206
              +    ++ ++SA   L+  F
Sbjct: 244 PGGQLGRFVIWTQSAFAHLDKLF 266


>gi|289609973|emb|CBI60349.1| unnamed protein product [Sordaria macrospora]
          Length = 180

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALII-DGCQLDRNFQLAARNI 170
            ALS    +  ++V+D L  +  KT+ L+     L      ++ DG  ++  F LAARN+
Sbjct: 1   MALSSHAKAGSLVVLDGLTVENGKTQVLLGNLAKLGFGKTSLVIDGDAVENTFALAARNL 60

Query: 171 PNINLLPVQGINVYDILRCSKLVLS 195
             +N+LP  G NVYDIL+   L + 
Sbjct: 61  RQVNVLPAGGANVYDILKHDTLAID 85


>gi|15920640|ref|NP_376309.1| 50S ribosomal protein L4P [Sulfolobus tokodaii str. 7]
 gi|15621423|dbj|BAB65418.1| 269aa long hypothetical 50S ribosomal protein L4 [Sulfolobus
           tokodaii str. 7]
          Length = 269

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 52/254 (20%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG-----CSKSKGRSEV 57
           +  + +L G     I +    F+   ++ ++ RV   +  +          +  +  +  
Sbjct: 12  KTHIFDLKGNKVEEIELP-IFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALS 70

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSD 116
                 +           ++       GG  AF P      V  + KK + LA+  ALS 
Sbjct: 71  FGINLGLARVPRVKTTGEAAL-APNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSA 129

Query: 117 KFCSNDI-------------MVIDNLVSKECKTKYLVTRF-------------------- 143
               N +             +++ + ++K  KTK ++                       
Sbjct: 130 TANMNFVKNRGHVFSIDTLPIIVVDDITKLTKTKEIIEVLESLKVYEDVERVKDRIRIRS 189

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----L 192
                  R        +    + +  F  AA NIP ++++    ++V  +          
Sbjct: 190 GKGKMRGRRYKEPKGPLFVIHENNPVFVKAASNIPGVDVILASDLSVIHLAPGGHPGRLT 249

Query: 193 VLSKSAIEALEDRF 206
           + +KS+I+ L  RF
Sbjct: 250 IYTKSSIDVLRKRF 263


>gi|261327247|emb|CBH10223.1| 60S ribosomal protein L4 [Trypanosoma brucei gambiense DAL972]
          Length = 374

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 55/257 (21%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCS-----KSKGRSEV 57
           +SV +  + +  G  S+   +F    +  ++  V    +   R   +       K  +E 
Sbjct: 7   VSVYSASEDKVVGTCSLP-AVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSAES 65

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRG-GGKAFGPVP----IIGVHALPKKVRSLALRH 112
             TG  +           + + +       G      P          +    +  A+  
Sbjct: 66  WGTGRAVARIPVFTVVVRACRVLVHSVTCAGVVVCSHPQRSSRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ V    KTK  +T  + +   + +      
Sbjct: 126 ALAASSLPALVMSRGHKIENVAEVPLVVEDGVRAYEKTKEAMTFLKTVGAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                                     D     A RNI  ++L  V  +N+  +     + 
Sbjct: 186 RQIRAGRGKMRNRRYVARRGPMLVMPDNKGTRAFRNIFGLDLANVNSLNLLHLAPGGHVG 245

Query: 193 ---VLSKSAIEALEDRF 206
              + +KSA E L+  F
Sbjct: 246 RFIIWTKSAFEKLDKIF 262


>gi|124028158|ref|YP_001013478.1| 50S ribosomal protein L4P [Hyperthermus butylicus DSM 5456]
 gi|123978852|gb|ABM81133.1| 50S ribosomal protein L4 [Hyperthermus butylicus DSM 5456]
          Length = 277

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 70/255 (27%), Gaps = 55/255 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           + V NL+G     + +   +F L  +  ++ R    +   +         +  +  +   
Sbjct: 19  VPVYNLEGSVAEEVQLP-RVFGLPVRIDLIRRAFLSEFTARLQPKGRDPLAGKRTTARSF 77

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGK-AFGPVPIIGVHALPKKVRSLALRHALSDK 117
             G  +              +      GG  A  P     +H    K        +    
Sbjct: 78  GVGLGIARVPRIPGL--GRAAFINSAVGGHLAHPPRVEKKIHEEINKKEKKLATASALAA 135

Query: 118 FCSND---------------IMVIDNLVSKECKTKYLVTRF------------------- 143
               +               ++V+D + +   + K                         
Sbjct: 136 TARKEFVEKRGHRFPAQTVPVIVVDEVETSITRVKEAKLLLEKLGVWSDIERAKERTRIR 195

Query: 144 --------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSK 191
                   R      +++      + +F  A   +P +++     +NV  +    +    
Sbjct: 196 AGKGKRRGRRYITPKSILFIVSNHNSSFARAVAGLPGVDVAEPWNVNVLQLAPGGVPGRL 255

Query: 192 LVLSKSAIEALEDRF 206
            V+++SA+E L  RF
Sbjct: 256 TVITRSALEELGKRF 270


>gi|19173410|ref|NP_597213.1| 60S RIBOSOMAL PROTEIN L4 [Encephalitozoon cuniculi GB-M1]
 gi|19170999|emb|CAD26389.1| 60S RIBOSOMAL PROTEIN L4 [Encephalitozoon cuniculi GB-M1]
          Length = 335

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 85/268 (31%), Gaps = 71/268 (26%)

Query: 2   IE--LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKG----- 53
           ++  ++    DG   K  + + E +F++  +Q ++ +       + R   + SK      
Sbjct: 1   MKQQINCYEADGVTVKKTLDLPE-VFSVPIRQDLVLKTYSLYRMKTRQPYAVSKNAGMQH 59

Query: 54  RSEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVR---- 106
            +E   TG  +      KG G  R    + + F   G+   P       A          
Sbjct: 60  SAESWGTGRAIARVPRVKGGGTRRAGQGAFANFCRKGRMAHPTKTHRRWARKVVENTKKI 119

Query: 107 --------------SLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA------- 145
                           A  H +SD      I+V D++  K  KTK  V   R        
Sbjct: 120 AEAMAVAASAQASLVEARGHRISD-VKMLPIIVSDDIA-KARKTKDAVEILRNLNMTEEL 177

Query: 146 --------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYD 185
                                     ++I   +      L  RNI  ++ + +  +   D
Sbjct: 178 KRVEKSRGVRCGKGKMRNRRYTQRKGILIVHGESSEM--LGFRNIRGVDQMSIDSL---D 232

Query: 186 ILR------CSKLVL-SKSAIEALEDRF 206
           +L         +L++ ++SA E L+  F
Sbjct: 233 LLELAPGGVAGRLIIWTESAFEKLDKIF 260


>gi|77999245|gb|ABB16969.1| unknown [Solanum tuberosum]
          Length = 405

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 74/259 (28%), Gaps = 57/259 (22%)

Query: 1   MIELSVRNLDGE-DKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKG 53
           +   +V++L+ +      +V    +     +  ++  V    S   R        +  + 
Sbjct: 6   IPTTTVQSLENDMATDSAAVPLPAVMKAPIRPDVVTYVHSNISKNARQPYAVSRKAGHQT 65

Query: 54  RSEVAYTGSKMYVQ---KGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL 108
            +E   TG  +       G G  R    +      GG+ F P          +P   +  
Sbjct: 66  SAESWGTGRAVSRILGCSGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKIPVNQKRY 125

Query: 109 ALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSN---- 150
           A+  A++            + I       +VI + +    KT   +   + +        
Sbjct: 126 AVASAIAASSVPSLVLARGHRIESVPELPLVISDSIEGIEKTSNAIKALKQIGAYPDAEK 185

Query: 151 -----------------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                                    +I           A RNIP + +  V  +N+  + 
Sbjct: 186 AKDSHAIRQGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEICHVDRLNLLKLA 245

Query: 188 RCSKL----VLSKSAIEAL 202
               L    + +K A E L
Sbjct: 246 PGGHLGRFIIWTKCAYEKL 264


>gi|89257931|gb|ABD65244.1| ribosomal protein L4 [Stenella coeruleoalba]
          Length = 316

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 67/228 (29%), Gaps = 54/228 (23%)

Query: 33  LARVLRWQSWRKRIGCS-----KSKGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFR 84
           +  V        R   +       +  +E   TG    ++   +G G  R    +     
Sbjct: 1   VNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMC 60

Query: 85  GGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVIDN 128
            GG+ F P          +    +  A+             +S      ++    +V+++
Sbjct: 61  RGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVED 120

Query: 129 LVSKECKTKYLVTRFRALDLSNALIIDGC--------------------------QLDRN 162
            V    KTK  V   + L   N +                                 D  
Sbjct: 121 KVEGYKKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNG 180

Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
              A RNIP I LL V  +N+  +     +    + ++SA   L++ +
Sbjct: 181 IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 228


>gi|300521622|gb|ADK26022.1| r-protein L4p [Candidatus Nitrososphaera gargensis]
          Length = 270

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 57/256 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQS--WRKRIGC---SKSKGRSE 56
           ++  V  + G++ G I +   +F    +  ++ +V         +R G    +     +E
Sbjct: 1   MKAKVVAVSGKETGEIELP-VVFDTPYRPEVIHKVYVNLLSHSYQRQGRYPAAGEMVSAE 59

Query: 57  VAYTGSKM---YVQKGTGRARHS-SKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
              TG  +      +G G  R   +  V+  R G  A  P    I    +  K + L L 
Sbjct: 60  SRNTGLGIARLARARGEGFPRAGQAAGVAGVRHGRVAHPPESWKIIYKKINHKEKQLGLC 119

Query: 112 HALSDKFCSNDI--------------MVIDNLVSKECKTKYLVTRF-------------- 143
            A++       +              +++ N +    KTK L                  
Sbjct: 120 SAIAATTRKELVQQRGHKIGDNVKLPIIVSNDIESIAKTKDLKKALLDLGLGDDIARASM 179

Query: 144 -------------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                        R      + +I      +   L+ R+I  +++   + ++V D+   S
Sbjct: 180 TRKAQSGTARRRGRPARSGTSALIVVGNNSKLVALS-RSISGVDIKHAKDVSVIDLAPGS 238

Query: 191 K----LVLSKSAIEAL 202
           K     + S+SAI+ L
Sbjct: 239 KPIRLTIFSQSAIDEL 254


>gi|296242584|ref|YP_003650071.1| 50S ribosomal protein L4P [Thermosphaera aggregans DSM 11486]
 gi|296095168|gb|ADG91119.1| LSU ribosomal protein L4P [Thermosphaera aggregans DSM 11486]
          Length = 271

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 78/254 (30%), Gaps = 54/254 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSW-----RKRIGCSKSKGRSEVA 58
           + V N +G + G + +   +F L  ++ ++ R            + R   +  +  ++  
Sbjct: 16  VKVFNTEGAEAGSLELPP-VFQLPVRKDLIRRAFLSAFTAMLQPKGRDPMAGRRTTAKYW 74

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDK 117
             G  +                +  R G  AF P P  +    + KK R+ A+  AL+  
Sbjct: 75  GVGYGIARVPRLPNGTARFVVSA--RKGHIAFPPTPDRVLREEVNKKERAHAIASALAAT 132

Query: 118 FCSN--------------DIMVIDNLVSKECKTKYLVTRF-------------------- 143
                              I+V+D+       +K                          
Sbjct: 133 SRIELVKARGHVFTADTLPIVVVDDAEENIGDSKRAREWLSKLGLWDDIVRSQEGTGIRA 192

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSKL 192
                  R      +++      ++    A RN P +++     + +  +    +     
Sbjct: 193 GKGKMRGRRYVEPKSILFVLTSYEKPLAKAVRNFPGVDIATPGNLGILHLAPGGVPGRLT 252

Query: 193 VLSKSAIEALEDRF 206
           V SK+A+E +  +F
Sbjct: 253 VFSKTALEEVSRKF 266


>gi|269866520|ref|XP_002652302.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220062780|gb|EED41754.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 244

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 50/231 (21%)

Query: 1   MIELSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGR 54
           M+ ++V   DG+   G I+    +F ++ +  ++ +     +   R        +  +  
Sbjct: 1   MMNVNVYGKDGKTVVGEIA-KPKVFDIELRPDMVMKTFACVNQNSRQPYAVSPNAGMQHS 59

Query: 55  SEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH---------ALP 102
           +E   TG  +      KG+G  R    + + F   G+   P                 L 
Sbjct: 60  AESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHPTKTHRRWHKKTPLNTRRLV 119

Query: 103 KKVRSLALRHALSDKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLSNALIID 155
             +   A  HA   +   + I       +V+ + +S   KT+      + ++L   L   
Sbjct: 120 TAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKV 179

Query: 156 GCQL------------------------DRNFQLAARNIPNINLLPVQGIN 182
                                       D     A  NI  + L  V  +N
Sbjct: 180 RESKTITCGKGKFRGRRYSKRTGLLIVHDNAALSAFSNIEGVELANVNSLN 230


>gi|15897622|ref|NP_342227.1| 50S ribosomal protein L4P [Sulfolobus solfataricus P2]
 gi|284174947|ref|ZP_06388916.1| 50S ribosomal protein L4P [Sulfolobus solfataricus 98/2]
 gi|11134368|sp|Q9UXA6|RL4_SULSO RecName: Full=50S ribosomal protein L4P
 gi|6015759|emb|CAB57586.1| ribosomal protein L4 (HMAL4) [Sulfolobus solfataricus P2]
 gi|13813887|gb|AAK41017.1| LSU ribosomal protein L4AE (rpl4AE) [Sulfolobus solfataricus P2]
 gi|261602390|gb|ACX91993.1| 50S ribosomal protein L4P [Sulfolobus solfataricus 98/2]
          Length = 267

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 77/255 (30%), Gaps = 53/255 (20%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEV 57
           +  + + DG     + +   IF+   ++ ++ RV   +             +  +  +E 
Sbjct: 9   KSDILDKDGNRIKEVELP-IIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAES 67

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV-PIIGVHALPKKVRSLALRHALS- 115
                 M        +  ++       GG  AF P            K + LA+  ALS 
Sbjct: 68  FGINLGMARVPRVKNSGEAAL-APNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSA 126

Query: 116 -------------DKFCSNDIMVIDNLVSKECKTKYLVTRFR------------------ 144
                         K      +V+ + +     T  +    +                  
Sbjct: 127 TADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIR 186

Query: 145 ---------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSKL 192
                            +I     +     AARN+  ++++  + ++V  +       +L
Sbjct: 187 AGKGKMRGRKYKEPIGPLIIVHDSNSPIIKAARNLAGVDVVNAKDVSVIHLAPGAHPGRL 246

Query: 193 -VLSKSAIEALEDRF 206
            + ++S+I+ L++R 
Sbjct: 247 TIYTESSIKILDERL 261


>gi|154341014|ref|XP_001566460.1| ribosomal protein L1a [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|154341020|ref|XP_001566463.1| ribosomal protein L1a [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063783|emb|CAM39971.1| putative ribosomal protein L1a [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134063786|emb|CAM39974.1| putative ribosomal protein L1a [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 373

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 77/257 (29%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
           +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 7   VSVYSASSDSVVGTCPLP-AVFTAPIRSDIVQFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ +    KTK  V   +A+   + +      
Sbjct: 126 ALAASSVPSLVMSRGHKIENVPEVPLVVEDSIQGYEKTKEAVAFLKAIAAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     +     A RNI  ++L  V  +N+  +       
Sbjct: 186 REIRAGRGKMRNRRYVARRGPMLVMPNNQGTRAFRNIFGLDLANVSALNLLHLAPGGHVG 245

Query: 192 --LVLSKSAIEALEDRF 206
             ++ +K+A E L+  F
Sbjct: 246 RFVIWTKTAFEQLDKIF 262


>gi|112982800|ref|NP_001037129.1| ribosomal protein L4 [Bombyx mori]
 gi|54609195|gb|AAV34813.1| ribosomal protein L4 [Bombyx mori]
          Length = 428

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 62/223 (27%), Gaps = 53/223 (23%)

Query: 4   LSVRNLDGEDK-GVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +   E   G       +F    +  ++  V    S   R        +  +  +E 
Sbjct: 10  VSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 69

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108
             TG    ++   +G G  R    +      GG+ F P          +  + R      
Sbjct: 70  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAALAA 129

Query: 109 -----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC 157
                        R  + +K     ++V D  V +  KTK  V   R L   + ++    
Sbjct: 130 AVAATGVPALVQARGHIIEKIPELPLVVADK-VQEINKTKQAVIFLRRLKAWSDILKVYK 188

Query: 158 --------------------------QLDRNFQLAARNIPNIN 174
                                       D+    A RNIP + 
Sbjct: 189 SQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVE 231


>gi|196007616|ref|XP_002113674.1| expressed hypothetical protein [Trichoplax adhaerens]
 gi|190584078|gb|EDV24148.1| expressed hypothetical protein [Trichoplax adhaerens]
          Length = 349

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 66/240 (27%), Gaps = 54/240 (22%)

Query: 21  EDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQKGTGR 72
             +     +  ++  V    +  KR        +  +  +E   TG    ++   +G G 
Sbjct: 2   PAVLKAPIRPDLVQFVHTNMAKNKRQPYAVSTKAGHQTSAESWGTGRAVARIPRVRGGGT 61

Query: 73  ARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDIM------ 124
            R    +      GG+ F P               R  A   AL+       +M      
Sbjct: 62  HRSGQAAYGNMCRGGRMFAPTRVWRRWTRKSNLSQRRYACASALAASSLPALVMARGHRI 121

Query: 125 --------VIDNLVSKECKTKYLVTRFRALDLSNALIIDGC------------------- 157
                   V+ + V    KT   V   + ++    +                        
Sbjct: 122 ENIQEVPLVVSDSVESITKTSAAVAFLKRVNAYQDVEKVKASRTLRTGKGKLRNRRYVQR 181

Query: 158 -------QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
                    D     A RN+P + L  +  +N+  +     +    V  +SA + L+  F
Sbjct: 182 RGPLIIYNADNGIVKAFRNVPGVELAQISRLNLLSLAPGGHMGRFCVWGESAFKKLDSVF 241


>gi|73536708|ref|XP_847773.1| ribosomal protein L1a [Leishmania major strain Friedlin]
 gi|321438685|emb|CBZ12444.1| putative ribosomal protein L1a [Leishmania major strain Friedlin]
 gi|321438686|emb|CBZ12446.1| putative ribosomal protein L1a [Leishmania major strain Friedlin]
          Length = 373

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 77/257 (29%), Gaps = 55/257 (21%)

Query: 4   LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
           +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 7   VSVYSASSDSVVGTCPLP-AVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ +    KTK  +   +A+   + +      
Sbjct: 126 ALAASSVPSLVMSRGHQIGNVPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     +     A RNI  ++L  V  +N+  +       
Sbjct: 186 REIRAGRGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVSALNLLHLAPGGHVG 245

Query: 192 --LVLSKSAIEALEDRF 206
             ++ ++SA E L+  F
Sbjct: 246 RFVIWTQSAFEQLDKIF 262


>gi|213612410|ref|ZP_03370236.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 58

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 153 IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +I   +LD N  LAARN+  +++    GI+   ++   K+V++  A++ +E+  
Sbjct: 4   LIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 57


>gi|114565337|ref|XP_001136829.1| PREDICTED: hypothetical protein [Pan troglodytes]
          Length = 220

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 38/206 (18%)

Query: 4   LSVRNLDGEDKGV-ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS 62
           +SV +  GE  G  +++   +F    +  I+  V        R   +     SE+A    
Sbjct: 8   ISVYSESGEASGKNVTLP-AVFKAPIRPDIVNFVHTNLHKNNRQPHA----VSELAGHRI 62

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           +   +            V + +  G       +  +     K  +   +   S +  +  
Sbjct: 63  EEVPEL---------PLVVEDKVEGYKKTKEAVSLLKKF--KAWNDIKKDYASQRMRAGK 111

Query: 123 IMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGIN 182
                              R R         I   + D     A RNIP I LL V  +N
Sbjct: 112 ----------------GKMRNRRCIQCTGPYIIYNE-DNGIIKAFRNIPGITLLNVSKLN 154

Query: 183 VYDILRCSKL----VLSKSAIEALED 204
           +  +     +    + +KSA + L++
Sbjct: 155 ILKLAPGGHVGLFCIWTKSAFQKLDE 180


>gi|325969278|ref|YP_004245470.1| 50S ribosomal protein L4P [Vulcanisaeta moutnovskia 768-28]
 gi|323708481|gb|ADY01968.1| 50S ribosomal protein L4P [Vulcanisaeta moutnovskia 768-28]
          Length = 278

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 78/251 (31%), Gaps = 53/251 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58
           + V +++G     I +    F    +  ++ R        +         +  +  +   
Sbjct: 22  VKVFDINGNAINEIELPSQFFE-PIRPDLILRAYISALTARLQPKGTDPMAGKRTTAVSF 80

Query: 59  YTGSKMYVQKGTGRARHSSKS-VSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS- 115
             G  +        +   +         G +A  P    +    + K+ R  A+R A++ 
Sbjct: 81  GIGLGIARVPRVKGSLWPTARLAPNVVKGRRAHPPKVEKVLHERINKRERRKAIRSAIAA 140

Query: 116 --------------DKFCSNDIMVIDNLV-----SKECKTKYLVTRF------------- 143
                         DK     ++V D+       +   K+   +  +             
Sbjct: 141 TAIKDLVIARGHTVDKVPQIPLIVNDDFERISVMADLKKSLESLGLWDDIERVAERIRIR 200

Query: 144 --------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCSK 191
                   R      +L+I     D +    ARN+P ++++PV+ + V  +    +    
Sbjct: 201 SGKGKMRGRRYKEGKSLLIVVSSTDASIIKVARNLPGVDVVPVRNLGVLYLAPGGVPGRL 260

Query: 192 LVLSKSAIEAL 202
            + + SAIE L
Sbjct: 261 TLWTSSAIEEL 271


>gi|206598194|gb|ACI15999.1| 60S ribosomal protein l4 [Bodo saltans]
          Length = 389

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 82/257 (31%), Gaps = 55/257 (21%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57
           ++V +  + +     S+   +F    +  I+  V    +   R   + ++       +E 
Sbjct: 24  VNVYSASEDKVVATTSLP-AVFTAPIRNDIVQFVHTNMAKNSRQAYAVNRLSGMNHAAES 82

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL-- 110
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 83  WGTGRAVARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 142

Query: 111 --------RHALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      LS      ++    +V+++ V    KTK  V   +A+  ++ +      
Sbjct: 143 ALAASSLPSLLLSRGHKIENVAEVPLVVEDSVQGYEKTKQAVAFLKAVAANDDINRVNDS 202

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     D     A RNI  +++  V  +N+  +       
Sbjct: 203 KEIRAGHGKARNRRYVARRGPMIVFPDNKGTRAFRNIFGLDIANVNALNLLHLAPGGHVG 262

Query: 192 --LVLSKSAIEALEDRF 206
             ++ +K+A E L+  F
Sbjct: 263 RFVIWTKAAFEQLDKIF 279


>gi|322488673|emb|CBZ23920.1| putative ribosomal protein L1a [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 373

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 76/253 (30%), Gaps = 55/253 (21%)

Query: 4   LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
           +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 7   VSVYSASSDSVVGTCPLP-AVFTAPIRNDIVQFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S     +++    +V+++ +    KTK  +   +A+   + +      
Sbjct: 126 ALAASSVPSLVMSRGHKISNVPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSK-- 191
                                     +     A RNI  ++L  V  +N+  +       
Sbjct: 186 REIRAGRGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVSALNLLHLAPGGHVG 245

Query: 192 --LVLSKSAIEAL 202
             ++ +KSA E L
Sbjct: 246 RFVIWTKSAFEQL 258


>gi|302416655|ref|XP_003006159.1| 60S ribosomal protein L4 [Verticillium albo-atrum VaMs.102]
 gi|261355575|gb|EEY18003.1| 60S ribosomal protein L4 [Verticillium albo-atrum VaMs.102]
          Length = 352

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 76/261 (29%), Gaps = 60/261 (22%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSE 56
             +++   DG+  G       +F+   +  I+  V +  +  KR   + S     +  +E
Sbjct: 5   PTVTIIGGDGKATGNTHTWPVVFSSPIRTDIVQDVHKGLAKNKRQPYAVSEKAGEQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +       G+ F P          +    +  A+ 
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHVKVNLGQKRYAVA 124

Query: 112 ----------------HALSDKFCSNDIMVIDNLVS-----------------------K 132
                           H +S+      ++  D   S                       K
Sbjct: 125 SALAASAVAPLLLARGHRISNVVEVPLVIDSDAFKSAAFAKTSAAAGLLKSVGAGPDLDK 184

Query: 133 ECKTKYLVTRFRALDLSNAL------IIDGCQLD-RNFQLAARNIPNINLLPVQGINVYD 185
             K+K L      +            ++   ++D +      RNI  +    V  +N+  
Sbjct: 185 VKKSKKLRAGKGKMRGRRFRQRRGPLVVYDPEVDGKELISGFRNIAGVETSAVTDLNLLQ 244

Query: 186 ILRCSKL----VLSKSAIEAL 202
           +     L    V + +A +AL
Sbjct: 245 LAPGGHLGRFIVWTSAAFKAL 265


>gi|170516813|gb|ACB15215.1| ribosomal protein L4 [uncultured marine group II euryarchaeote
           DeepAnt-15E7]
          Length = 292

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 73/268 (27%), Gaps = 72/268 (26%)

Query: 7   RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSK------------SKGR 54
            +++  D   I++    F+   ++ ++   +      +R                  K  
Sbjct: 26  YSVEANDGKSITLPSA-FSSDVREDLIRSTVLASRANRRQPYGHREHDGKRAPQPGMKHS 84

Query: 55  SEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL 114
            E    G  +         R  +++     G       V       +  K R +A   A+
Sbjct: 85  VEWWGKGRGVSRIMRKTGQRTGAQNPHTRGGRRAHGPLVAKDWSQKVNSKQRRMARDSAI 144

Query: 115 SDKFCSNDI--------------MVIDNLVSK---------------ECKTKYLVTRFR- 144
           +    +  +              ++ID  V                 +  T+  V     
Sbjct: 145 AATVDAESVAARGHRFDVGVRFPVIIDGYVESRNDSEEKYEIESIPLQYSTRKFVAMMEG 204

Query: 145 -------------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQ 179
                                        +   I+           AARN+P ++ +  +
Sbjct: 205 LGLGADLERAKNGRNIRAGKGKMRGRRYRTPKSILLVVSNRDGLHKAARNVPGVDAVVTK 264

Query: 180 GINVYDIL---RCSKL-VLSKSAIEALE 203
            ++  D+       +L V +K+AIE LE
Sbjct: 265 DLSAEDLAPGGDSGRLTVWTKAAIEELE 292


>gi|66732135|gb|AAY52214.1| SL3 [Brugia malayi]
          Length = 306

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 10/128 (7%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYT 60
           V N   E          +F    +  I++ V       KR        +  +  +E   T
Sbjct: 127 VYNDKSEPTDTQIRLPGVFRAPLRPDIVSFVHDQIRKNKRQPYAVSVEAGHQTSAESWGT 186

Query: 61  GS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALS 115
           G    ++   +G G  R    +      GG+ F P          +    +  A+  A +
Sbjct: 187 GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKVFRRWHRRVNVAQKRYAMVSART 246

Query: 116 DKFCSNDI 123
            +   N +
Sbjct: 247 SRLVLNMV 254


>gi|229579207|ref|YP_002837605.1| 50S ribosomal protein L4P [Sulfolobus islandicus Y.G.57.14]
 gi|229582041|ref|YP_002840440.1| 50S ribosomal protein L4P [Sulfolobus islandicus Y.N.15.51]
 gi|259491574|sp|C3NHA8|RL4_SULIN RecName: Full=50S ribosomal protein L4P
 gi|259491575|sp|C3NEE4|RL4_SULIY RecName: Full=50S ribosomal protein L4P
 gi|228009921|gb|ACP45683.1| ribosomal protein L4/L1e [Sulfolobus islandicus Y.G.57.14]
 gi|228012757|gb|ACP48518.1| ribosomal protein L4/L1e [Sulfolobus islandicus Y.N.15.51]
          Length = 267

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 82/254 (32%), Gaps = 57/254 (22%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVAYT 60
           + + DG     + +   IF+   ++ I+ RV   +             +  +  +E    
Sbjct: 12  ILDKDGNKVKEVELP-FIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGI 70

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
              M        +  ++       GG   F P      V  +  K + LA+  ALS    
Sbjct: 71  NLGMARVPRVKNSGEAAL-APNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALS--AT 127

Query: 120 SNDIMV-------IDNLVSKECKTKYLVT------------------------------- 141
           ++ + V        D++      T  +V+                               
Sbjct: 128 ADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRA 187

Query: 142 -----RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSKL- 192
                R R    S   +I     +     AARNI  ++++  + ++V  +       +L 
Sbjct: 188 GKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHSGRLT 247

Query: 193 VLSKSAIEALEDRF 206
           + ++++I+ L++R 
Sbjct: 248 IYTETSIKILDERL 261


>gi|227827692|ref|YP_002829472.1| 50S ribosomal protein L4P [Sulfolobus islandicus M.14.25]
 gi|229584896|ref|YP_002843398.1| 50S ribosomal protein L4P [Sulfolobus islandicus M.16.27]
 gi|238619863|ref|YP_002914689.1| 50S ribosomal protein L4P [Sulfolobus islandicus M.16.4]
 gi|259491570|sp|C3N5S8|RL4_SULIA RecName: Full=50S ribosomal protein L4P
 gi|259491571|sp|C4KHF7|RL4_SULIK RecName: Full=50S ribosomal protein L4P
 gi|259491573|sp|C3MVH9|RL4_SULIM RecName: Full=50S ribosomal protein L4P
 gi|227459488|gb|ACP38174.1| ribosomal protein L4/L1e [Sulfolobus islandicus M.14.25]
 gi|228019946|gb|ACP55353.1| ribosomal protein L4/L1e [Sulfolobus islandicus M.16.27]
 gi|238380933|gb|ACR42021.1| ribosomal protein L4/L1e [Sulfolobus islandicus M.16.4]
 gi|323474750|gb|ADX85356.1| ribosomal protein L4/L1e [Sulfolobus islandicus REY15A]
 gi|323477478|gb|ADX82716.1| ribosomal protein L4/L1e [Sulfolobus islandicus HVE10/4]
          Length = 267

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 80/252 (31%), Gaps = 53/252 (21%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVAYT 60
           + + DG     + +   IF+   ++ I+ RV   +             +  +  +E    
Sbjct: 12  ILDKDGNKVKEVELP-FIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGI 70

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
              M        +  ++       GG   F P      V  +  K + LA+  ALS    
Sbjct: 71  NLGMARVPRVKNSGEAAL-APNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATAD 129

Query: 120 SNDI-----MVIDNLVSKECKTKYLVT--------------------------------- 141
           +  +     +  D++      T  +V+                                 
Sbjct: 130 TVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGK 189

Query: 142 ---RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSKL-VL 194
              R R        +I     +     AARNI  ++++  + ++V  +       +L + 
Sbjct: 190 GKMRGRKYKEPIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHPGRLTIY 249

Query: 195 SKSAIEALEDRF 206
           ++++I+ L++R 
Sbjct: 250 TETSIKILDERL 261


>gi|207346857|gb|EDZ73223.1| YDR012Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 232

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 60/225 (26%), Gaps = 52/225 (23%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR------------- 144
                       L+       I    +V+   +    KTK  V   +             
Sbjct: 124 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLK 183

Query: 145 --------------ALDLSNALIIDGCQLDRNFQLAARNIPNINL 175
                                 ++   + D     A RN+P +  
Sbjct: 184 SKKLRAGKGKYRNRRWTQRRGPLVVYAE-DNGIVKALRNVPGVET 227


>gi|213581209|ref|ZP_03363035.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 55

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 31/54 (57%)

Query: 153 IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +I   +LD N  LAARN+  +++    GI+   ++   K+V++  A++ +E+  
Sbjct: 1   MIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 54


>gi|284997895|ref|YP_003419662.1| ribosomal protein L4/L1e [Sulfolobus islandicus L.D.8.5]
 gi|284445790|gb|ADB87292.1| ribosomal protein L4/L1e [Sulfolobus islandicus L.D.8.5]
          Length = 267

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 79/252 (31%), Gaps = 53/252 (21%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVAYT 60
           + + DG     + +   IF+   ++ I+ RV   +             +  +  +E    
Sbjct: 12  ILDKDGNKVKEVELP-FIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGI 70

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
              M        +  ++       GG   F P      V  +  K + LA+  ALS    
Sbjct: 71  NLGMARVPRVKNSGEAAL-APNTVGGRLTFPPSVDKKLVEEVNDKEKQLAVISALSATAD 129

Query: 120 SNDI-----MVIDNLVSKECKTKYLV---------------------------------- 140
              +     +  D++      T  +V                                  
Sbjct: 130 KVFVKARGHVFKDSVSFPIVVTDDIVRLKTASEVEEFLEKIGVYDDVKRVKERIRIRAGK 189

Query: 141 --TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI---LRCSKL-VL 194
              R R    S   +I     +     AARNI  ++++  + ++V  +       +L + 
Sbjct: 190 GKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGAHSGRLTIY 249

Query: 195 SKSAIEALEDRF 206
           ++++I+ L++R 
Sbjct: 250 TETSIKILDERL 261


>gi|126460190|ref|YP_001056468.1| 50S ribosomal protein L4P [Pyrobaculum calidifontis JCM 11548]
 gi|126249911|gb|ABO09002.1| LSU ribosomal protein L4P [Pyrobaculum calidifontis JCM 11548]
          Length = 285

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 76/256 (29%), Gaps = 55/256 (21%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
           L V +++G+    I      F    +  ++ R        +         +  +   E  
Sbjct: 31  LKVYDVNGQYMADIETPIH-FYEPVRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESF 89

Query: 59  YTGSKMYVQKGTGRARHSS-KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL-- 114
             G  +                    RGG +A  P P       +  K ++LA+R A+  
Sbjct: 90  GVGLGIARIPRYKGHLWPRGCFAPNTRGGRRAHPPRPEKKLHEEINWKEKNLAIRSAIAA 149

Query: 115 ----SDKFCSNDIM-----------------------------------VIDNLVSKECK 135
               S       ++                                   V       + +
Sbjct: 150 TAYKSWVAARGHMVEKVPSLPLVVSGDAEKIAKAKEAKKLFEVLGLWPDVERAAEGVKIR 209

Query: 136 TKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL--- 192
                 R R      ++++   +LD     A RN P ++++PV  +N+  +L    +   
Sbjct: 210 AGKGKMRGRRYKEPKSVLVVVSELDVPLIGAVRNFPGVDVVPVSHLNML-VLAPGGVPGR 268

Query: 193 --VLSKSAIEALEDRF 206
             + + +A+E L+  F
Sbjct: 269 LTLWTATAVERLKGLF 284


>gi|225322928|gb|ACN86307.1| ribosomal protein-like protein [Pectinaria gouldii]
          Length = 161

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 12/122 (9%)

Query: 4   LSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +SV +  G      +++   +F    +  I+  V       +R        +  +  +E 
Sbjct: 9   VSVYSDKGTVTDRQVTLP-AVFKAPIRTDIVNFVHFQVQKNQRQAYAVSEKAGHQTSAES 67

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++   +G G  R    +      GG+ F P          +    +  A+  
Sbjct: 68  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHKRVNVNQKRYAICS 127

Query: 113 AL 114
           A+
Sbjct: 128 AI 129


>gi|145592243|ref|YP_001154245.1| 50S ribosomal protein L4P [Pyrobaculum arsenaticum DSM 13514]
 gi|145284011|gb|ABP51593.1| LSU ribosomal protein L4P [Pyrobaculum arsenaticum DSM 13514]
          Length = 278

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 55/253 (21%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +L V   DG     I      F    +  ++ R        +         +  +   E 
Sbjct: 23  KLKVYGPDGAYIAEIDAPPHFFE-PVRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCES 81

Query: 58  AYTGSKMYVQKGTGRARHSS-KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL- 114
              G  +        +           RGG +A  P         + KK ++LA+R A+ 
Sbjct: 82  FGVGLGIARIPRYKGSLWPRGCFSPNTRGGRRAHPPRVEKKLHEEINKKEKNLAIRSAIA 141

Query: 115 -----SDKFCSNDIM--------VIDNLVSKECKTKYLVTRF------------------ 143
                +       ++        V+     K  K K     F                  
Sbjct: 142 ATAYRTWVATRGHVIDKVQSLPVVVSGDAEKIAKAKEARKLFEALGLWPDVERAAEGTKI 201

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL-- 192
                    R      ++++     D     A RN P ++++P + +N+  +L    +  
Sbjct: 202 RAGKGKMRGRRYKEPKSVLVVVSAADAPLAAAVRNFPGVDVVPAEHLNML-VLAPGAVPG 260

Query: 193 ---VLSKSAIEAL 202
              + +  A+E L
Sbjct: 261 RLTLWTAPAVEKL 273


>gi|227830388|ref|YP_002832168.1| 50S ribosomal protein L4P [Sulfolobus islandicus L.S.2.15]
 gi|259491572|sp|C3MQ60|RL4_SULIL RecName: Full=50S ribosomal protein L4P
 gi|227456836|gb|ACP35523.1| Ribosomal protein L4/L1e [Sulfolobus islandicus L.S.2.15]
          Length = 267

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 57/254 (22%)

Query: 6   VRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVAYT 60
           + + DG     + +   IF+   ++ I+ RV   +             +  +  +E    
Sbjct: 12  ILDKDGNKVKEVELP-FIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGI 70

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDKFC 119
              M        +  ++       GG   F P      V     K + LA+  ALS    
Sbjct: 71  NLGMARVPRVKNSGEAAL-APNTVGGRLTFPPSVDKKLVEEANDKEKQLAVISALS--AT 127

Query: 120 SNDIMV-------IDNLVSKECKTKYLVT------------------------------- 141
           ++ + V        D++      T  +V+                               
Sbjct: 128 ADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDDVKRVKERIRIRA 187

Query: 142 -----RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
                R R    S   +I     +     AARNI  ++++  + ++V  +       +L 
Sbjct: 188 GKGKMRGRKYKESIGPLIIVHDSNSPIVKAARNIAGVDVVNAKDVSVIHLAPGTHSGRLT 247

Query: 193 VLSKSAIEALEDRF 206
           + ++++I+ L++R 
Sbjct: 248 IYTETSIKILDERL 261


>gi|169929959|gb|ACB05657.1| 50S ribosomal protein L4 [Leptospira biflexa serovar Patoc strain
          'Patoc 1 (Paris)']
          Length = 63

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
          ++    N +G     + +  ++FA     G +   ++ ++   R G   +K RSEV   G
Sbjct: 1  MKARKYNKEGVFVSEVELPAELFATGISLGAIYDAVKAENANNRQGTHSTKDRSEVRGGG 60

Query: 62 SKM 64
           K 
Sbjct: 61 IKP 63


>gi|171185279|ref|YP_001794198.1| 50S ribosomal protein L4P [Thermoproteus neutrophilus V24Sta]
 gi|170934491|gb|ACB39752.1| ribosomal protein L4/L1e [Thermoproteus neutrophilus V24Sta]
          Length = 284

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 70/252 (27%), Gaps = 53/252 (21%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           +L V   DG     I      F    +  ++ R        +         +  +   E 
Sbjct: 29  KLKVYGPDGAYIADID-PPLHFMEPVRPDLIRRAYLSALSARFQPKGVYEGAGREHSCES 87

Query: 58  AYTGSKMYVQKGTGRARHSS-KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHAL- 114
              G  +        +           RGG +A  P         + +K ++LA+R A+ 
Sbjct: 88  FGVGLGIARIPRYKGSLWPRGCFAPNTRGGRRAHPPKVEKKLHEEINRKEKNLAIRSAIA 147

Query: 115 -----SDKFCSNDIM--------VIDNLVSKECKTKYLVTRF------------------ 143
                S       ++        V+     K  + K                        
Sbjct: 148 ATAYRSWVAARGHVVDKIPALPLVVVGDAEKVGRAKEARKLLEALGLWPDVERAAAGVKI 207

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK--- 191
                    R      ++++     D     A RN P ++++PV G+N+  +        
Sbjct: 208 RSGKGKRRGRRYKEPKSVLVVVSSADVPLAAAVRNFPGVDVVPVDGLNMLVLAPGGAPGR 267

Query: 192 -LVLSKSAIEAL 202
             + +  A+E L
Sbjct: 268 LTLWTVPAVEKL 279


>gi|322693709|gb|EFY85560.1| 60S ribosomal protein L4, putative [Metarhizium acridum CQMa 102]
          Length = 376

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 10/112 (8%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
             +S+   DG   G       +F    +  I+ RV    +  KR        +  +  +E
Sbjct: 5   PTVSIIGKDGAPTGATHPVPAVFTSPIRPDIVQRVHTGMAKNKRQPYAVSEKAGHQTSAE 64

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPK 103
              TG    ++    G G  R    +       G+ F P          + +
Sbjct: 65  SWGTGRAVARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKIWRKWHVKINQ 116



 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 153 IIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
           ++   ++D +    A RNIP +   PV  +N+  +     L    V + SA +AL+D +
Sbjct: 236 VVYNPEVDGKELVKAFRNIPGVETSPVSALNLLQLAPGGHLGRFIVWTSSAFKALDDIY 294


>gi|213586154|ref|ZP_03367980.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
          serovar Typhi str. E98-0664]
          Length = 50

 Score = 63.6 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 25 ALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRAR 74
               + ++ +V+   +   R G    K R+EV  +G K + QKGTGRAR
Sbjct: 1  GRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 50


>gi|307595042|ref|YP_003901359.1| 50S ribosomal protein L4P [Vulcanisaeta distributa DSM 14429]
 gi|307550243|gb|ADN50308.1| 50S ribosomal protein L4P [Vulcanisaeta distributa DSM 14429]
          Length = 278

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 53/252 (21%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEV 57
            + V +L G     +S+    F    +  ++ R        K         +  +  +  
Sbjct: 21  TVKVLDLGGNAVSEVSLPPQ-FLEPIRPDLILRAYISALTAKLQPKGTDPMAGKRTTAVS 79

Query: 58  AYTGSKMYVQKGTGRARHSS-KSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS 115
              G  +        +   + +       G +A  P    +    + K+ R  A+R A++
Sbjct: 80  FGIGLGLARVPRVKGSLWPTARFAPNVVKGRRAHPPKVEKVLHERINKRERRKAIRSAIA 139

Query: 116 ---------------DKFCSNDIMVIDNLV----SKECKTKYLVTRF------------- 143
                          +K     ++V D+        + K   +                 
Sbjct: 140 ATAIKDLITARGHIVEKVPQIPLIVSDDFERIGVMADLKKALMSLGLWDDIERVAERIRV 199

Query: 144 ---------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDI----LRCS 190
                    R      +L+I    +D      ARN+P ++ +PV+ ++V  +    +   
Sbjct: 200 RSGKGKMRGRRYKEGKSLLIVVSTVDAPVIKVARNLPGVDAVPVRNLSVLYLAPGGVPGR 259

Query: 191 KLVLSKSAIEAL 202
             V + SAIE L
Sbjct: 260 LTVWTLSAIEEL 271


>gi|322815150|gb|EFZ23873.1| hypothetical protein TCSYLVIO_10010 [Trypanosoma cruzi]
          Length = 373

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 15/165 (9%)

Query: 2   IE----LSVRNLDGEDKGVISVSEDIFA-----LKPQQGILARVLRWQSWRKRIGCSKSK 52
           ++    + V NL  E      +   +F       +  + +   ++R Q++  +       
Sbjct: 160 MKERIIVPVFNLKNEVTHTRELDPFVFGMYPETEELSKNLTYWLVRCQNYASKWDY---- 215

Query: 53  GRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALR 111
              E+     K +   G G  R S++   Q+  GG+     P  + +  +  K  S + R
Sbjct: 216 ETREIWRKAKKNWPNTGMGMPRVSNRKNHQYPWGGRTKPSKPWNMLMPTMDVKTWSKSNR 275

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
             L+ K     + V++ L   E  T+            +     G
Sbjct: 276 MMLTLKMLQGRLQVVERLTLSEP-TQECYLGLCRTMSWDVRHTGG 319


>gi|289810161|ref|ZP_06540790.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 50

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 29/49 (59%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           +LD N  LAARN+  +++    GI+   ++   K+V++  A++ +E+  
Sbjct: 1   ELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEML 49


>gi|193084206|gb|ACF09870.1| ribosomal protein L4 [uncultured marine group II euryarchaeote
           KM3-136-D10]
          Length = 292

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 68/263 (25%), Gaps = 72/263 (27%)

Query: 12  EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC------------SKSKGRSEVAY 59
           +    I + +  F+   +  ++   ++     +R               +  K   E   
Sbjct: 31  KAGKAIELPD-CFSADIRVQVVRDAVQSARANRRQPYGHNRHEGRRNPVAGMKHSVEWWG 89

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G  +            +++     G       V       +  KVR  A   A++    
Sbjct: 90  KGRGVSRIMRKTGQSTGAENPHTRGGRRAHGPKVEKDWTMKVNSKVRKQARNSAIAATIN 149

Query: 120 SNDI--------------MVIDNLVSK---------------ECKTKYLVTRFR------ 144
           ++ +              ++ID                       T+  +          
Sbjct: 150 TDTVANRGHRFSDDVKFPVIIDGYSEDRDGKKEKYDVESIPLTYSTRKFIAMMEGLGLGA 209

Query: 145 --------------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
                                   +   I+           AA N+  ++++  + ++  
Sbjct: 210 DLNRAKNGRNIRAGKGKMRGRRRRTPKSILLVVGQRDGLAKAASNVSGVDVVAAKDLSAE 269

Query: 185 DILRCSKL----VLSKSAIEALE 203
           D+     +    V +KSAIEALE
Sbjct: 270 DLAPGGDMGRLTVWTKSAIEALE 292


>gi|154421449|ref|XP_001583738.1| ribosomal protein [Trichomonas vaginalis G3]
 gi|121917981|gb|EAY22752.1| ribosomal protein, putative [Trichomonas vaginalis G3]
          Length = 370

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 65/227 (28%), Gaps = 53/227 (23%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57
            ++V   +G+    I +   +F    +  ++  V    +   +   +       K  +  
Sbjct: 5   TVNVLTQEGQKASTIELP-KVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAIS 63

Query: 58  AYTGSKMYVQK---GTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108
             TG          G+G  R+   + + F  GG  F P          +P + R      
Sbjct: 64  WGTGRAKARVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIAS 123

Query: 109 -----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRAL----------- 146
                        R  +  +     I+V+D  V +  +T+  V   + +           
Sbjct: 124 AIAATAVVPLVQARGHILGEVKEVPIVVVDA-VQEIKRTRDAVELLKKVGVYGDVQRVLD 182

Query: 147 ---------------DLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
                            +    +     D+    A RNIP +  + V
Sbjct: 183 GSVHRSSKGKFRRAAYKTKKGPLVIYNEDKGIVKAFRNIPGVETISV 229


>gi|123490224|ref|XP_001325568.1| ribosomal protein [Trichomonas vaginalis G3]
 gi|121908469|gb|EAY13345.1| ribosomal protein, putative [Trichomonas vaginalis G3]
          Length = 370

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 80/256 (31%), Gaps = 59/256 (23%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57
            ++V   +G+    I +   +F    +  ++  V    +   +   +       K  +  
Sbjct: 5   TVNVLTQEGQKASTIELP-KVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAIS 63

Query: 58  AYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108
             TG          G+G  R+   + + F  GG  F P          +P + R      
Sbjct: 64  WGTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIAS 123

Query: 109 -----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA------------ 145
                        R  +  +     I+V+D  V +  +T+  V   +             
Sbjct: 124 AIAATAVVPLVQARGHVLGEVKEVPIVVVDA-VQEIKRTRDAVELLKKVGVYGDVQRVLD 182

Query: 146 ---------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                                 ++   + D+    A RNIP +  + V+ + +  +   +
Sbjct: 183 GSVHRSSKGKFRRAAYKTKKGPLVIYNE-DKGIVKAFRNIPGVETISVKALALAKLAPAA 241

Query: 191 KL----VLSKSAIEAL 202
           ++    V ++SA +AL
Sbjct: 242 QVGRLTVWTESAFKAL 257


>gi|255513435|gb|EET89701.1| ribosomal protein L4/L1e [Candidatus Micrarchaeum acidiphilum
           ARMAN-2]
          Length = 261

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 88/252 (34%), Gaps = 51/252 (20%)

Query: 1   MIE-LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIG----------CS 49
           M + + V N+DG+    + ++E +F  + +  ++ R    ++                 +
Sbjct: 1   MAKSIDVLNIDGKKDHKLDLAE-VFDTEIEPWLIRRAAIAENTYGLQPQGHFPLAGMQTT 59

Query: 50  KSKGRSEVAYT-----GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALP 102
                + ++Y      G  +  ++  G               GK   P       V  + 
Sbjct: 60  AQYYGAMMSYRTGRHMGRAIRPREKLGGGVQGKVKRIPSSVKGKRAHPHMIEKKLVEKMN 119

Query: 103 KKVRSLALRHALSDKFCSN------DIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
           KK    A++ A++    SN        +V  + +    K+K ++   +A+++   +    
Sbjct: 120 KKEYQAAIKSAIAYSASSNLASGVETPIVFSDTLESVKKSKDIIKMLKAINIYKLISDKS 179

Query: 157 CQ----------------------LDRNFQLAARNIPNINLLPVQGINVYDIL---RCSK 191
            +                       D     A+RNIP I  + +  + V D++       
Sbjct: 180 KREKGTSRRTQRKAFSKKIAIIVLNDDGAVRASRNIPGITAVKLSALKVNDLVPGGEHPL 239

Query: 192 L-VLSKSAIEAL 202
           + + S+SA++++
Sbjct: 240 VPIWSESALKSI 251


>gi|289806055|ref|ZP_06536684.1| 50S ribosomal protein L4 [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 59

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
          +EL +++        ++VSE  F     + ++ +V+   +   R G    K R+EV  +G
Sbjct: 1  MELVLKDAQ----SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSG 56

Query: 62 SKM 64
           K 
Sbjct: 57 KKP 59


>gi|123449817|ref|XP_001313624.1| ribosomal protein [Trichomonas vaginalis G3]
 gi|123486300|ref|XP_001324688.1| ribosomal protein [Trichomonas vaginalis G3]
 gi|121895514|gb|EAY00695.1| ribosomal protein, putative [Trichomonas vaginalis G3]
 gi|121907575|gb|EAY12465.1| ribosomal protein, putative [Trichomonas vaginalis G3]
          Length = 370

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 59/256 (23%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57
            ++V   DG+    I +   +F    +  ++  V    +   +   +       K  +  
Sbjct: 5   TVNVLAQDGQKASTIELP-KVFDTPIRAEVVKEVYVNLAKNAQQPHANDPMAGKKVSAIS 63

Query: 58  AYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSL---- 108
             TG          G+G  R+   + + F  GG  F P          +P + R      
Sbjct: 64  WGTGRAKACVPRVNGSGSNRNGQGAYANFCRGGHRFNPPTLLRRWFRPVPSRQRKFAIAS 123

Query: 109 -----------ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRA------------ 145
                        R  +  +     I+V+D  V +  +T+  V   +             
Sbjct: 124 AIAATAVVPLVQARGHVLGEVKEVPIVVVDA-VQEIKRTRDAVELLKKVGVYGDVQRVLD 182

Query: 146 ---------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCS 190
                                 ++   + D+    A RNIP +  + V+ + +  +   +
Sbjct: 183 GSVHRSSKGKFRRAAYKTKKGPLVIYNE-DKGIVKAFRNIPGVETISVKALALAKLAPAA 241

Query: 191 KL----VLSKSAIEAL 202
           ++    V ++SA +AL
Sbjct: 242 QVGRLTVWTESAFKAL 257


>gi|44966650|gb|AAS49558.1| ribosomal protein L4 [Latimeria chalumnae]
          Length = 289

 Score = 60.9 bits (146), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 54/237 (22%)

Query: 24  FALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGS---KMYVQKGTGRARH 75
           F    +  ++  V        R        +  +  +E   TG    ++   +G G  R 
Sbjct: 1   FKAPIRPDVVNFVRTNLRKNSRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRS 60

Query: 76  SSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR----------HALSDKFCSNDI 123
              +      GG+ F P          +    +  A+             LS      +I
Sbjct: 61  GQGAFGNMCRGGRMFAPTKTWRRWHRRVNITQKRYAICSALAASALPALVLSKGHRIEEI 120

Query: 124 ----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQL-------------------- 159
               +V+D+ V    KTK  V   + L   N +                           
Sbjct: 121 PEVPLVVDDKVEGYKKTKEAVLLLKKLKAWNDVKKVYASQRMRAGKGKMRNRRCIQRRGP 180

Query: 160 ------DRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
                 D     A RNIP I LL V  +N+  +     +    + ++SA   L++ +
Sbjct: 181 CIIYSEDNGITKAFRNIPGITLLNVNKLNLLRLAPGGHVGRFCIWTESAFRRLDELY 237


>gi|94733360|emb|CAK04710.1| ribosomal protein L4 [Danio rerio]
          Length = 99

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 4  LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
          +SV +  GE  G   V   +F    +  I+  V       KR        +  +  +E  
Sbjct: 8  ISVYSEKGETSGKNVVMPAVFRAPIRPDIVNFVHTNMRKNKRQPYAVSELAGHQTSAESW 67

Query: 59 YTGS---KMYVQKGTGRARHS 76
           TG    ++   +G G  R  
Sbjct: 68 GTGRAVARIPRVRGGGTHRSG 88


>gi|86152290|ref|ZP_01070501.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85840779|gb|EAQ58030.1| 50S ribosomal protein L4 [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 98

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 108 LALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAA 167
           +AL  AL+DK     +   D+L  +  KTK   T  + L + +ALI+    LD    LA 
Sbjct: 1   MALERALADKAAKGALFTADSLAIESGKTKDANTVIKKLGVKDALIVKDL-LDEKTLLAY 59

Query: 168 RNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204
           RN+ N  ++ V  +N Y +   + +++ KSA+E++  
Sbjct: 60  RNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESITK 96


>gi|162605830|ref|XP_001713430.1| 60s ribosomal protein L1 [Guillardia theta]
 gi|13794362|gb|AAK39739.1|AF083031_96 60s ribosomal protein L1 [Guillardia theta]
          Length = 255

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 81/248 (32%), Gaps = 51/248 (20%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSE-----VAY 59
           +V + +      + +   +F  K +  I+  V +     KR   + S             
Sbjct: 5   NVYSCNKNIIDKLKIP-KVFFSKIRVDIVRFVHKNMCKNKRQVYAVSSTAGMGTSAVSWG 63

Query: 60  TGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL---- 110
           TG    ++    G+G  R    +++ F  GG+ F P        H + K  R  A+    
Sbjct: 64  TGRAVSRVPRVPGSGTHRSGQGAIANFCRGGRIFNPTTIWRKWHHKINKNQRKSAIFSAI 123

Query: 111 ----------RHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ-- 158
                           K       VI++ + K  KT+ L+     L +++ +     +  
Sbjct: 124 ASSSIVSIIVSRGYRVKTIPEIPFVIEDSIEKIPKTRDLIKILTTLGINSIVRNKLKRKL 183

Query: 159 --------------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VL 194
                               + +N   + RNI NI+ + +  +N+  +     L    + 
Sbjct: 184 KSGKGKMRNRRFKKPTGPLLVFKNNLKSLRNIANIDCMKISALNLTKLAPGGHLGRLCIW 243

Query: 195 SKSAIEAL 202
           S  A + L
Sbjct: 244 SSKAFQML 251


>gi|160331635|ref|XP_001712524.1| rpl1 [Hemiselmis andersenii]
 gi|159765973|gb|ABW98199.1| rpl1 [Hemiselmis andersenii]
          Length = 312

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 82/256 (32%), Gaps = 53/256 (20%)

Query: 3   ELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV---- 57
           +++V + + +     +++ E IF    +  I   V    S  KR   S ++         
Sbjct: 5   KVNVYSSEDKFLVDSVNLPE-IFLSPIRIDIFKFVFLNMSKNKRQSYSVNQSSGMNTSAI 63

Query: 58  -AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++   KG+G  R    +V  F  GG+ F P        H + K  R  A+ 
Sbjct: 64  SWGTGRAVARIPRVKGSGTNRSGQGAVGNFCRGGRMFSPTTIWRKWHHKIIKNQRRQAVL 123

Query: 112 HALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA------------ 145
            +++            + I       +VI++ V     TK+  T  +             
Sbjct: 124 TSVACSGLVSLVMARGHKISETPEIPLVIESCVESIICTKFGQTALKNLGAYSDIRDKLK 183

Query: 146 -----------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL-- 192
                       +      +    +      A RNIP I    +  +N+  +     +  
Sbjct: 184 KKTLKAGKGKLRNRRRKKYLGPLIIFEKNARAFRNIPGIETCCIDYLNIQKLAPGGHVGR 243

Query: 193 --VLSKSAIEALEDRF 206
             + +  +   L+  +
Sbjct: 244 FCIWTYKSFSKLDQIY 259


>gi|256762005|ref|ZP_05502585.1| predicted protein [Enterococcus faecalis T3]
 gi|256683256|gb|EEU22951.1| predicted protein [Enterococcus faecalis T3]
          Length = 62

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 36/61 (59%)

Query: 146 LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDR 205
           + +   +++     +    L+ARN+PN++++    ++V D++  +K++ +++A+  +E+ 
Sbjct: 1   MSIDTKVLVVLENGNDFAALSARNLPNVSVVTSDNVSVLDVVSANKVLATQTALTQIEEV 60

Query: 206 F 206
            
Sbjct: 61  L 61


>gi|94993443|ref|YP_601541.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes
          MGAS10750]
 gi|94546951|gb|ABF36997.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes
          MGAS10750]
          Length = 109

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 27/57 (47%)

Query: 1  MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV 57
          M  +++ +  G++   + +++ IF ++P + ++  V+  Q    R    + K   + 
Sbjct: 1  MANVNLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQVLMRLKTVQQY 57


>gi|553139|gb|AAA34975.1| ribosomal protein L2 [Saccharomyces cerevisiae]
          Length = 200

 Score = 59.7 bits (143), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 24/167 (14%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R   ++      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQRAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 H----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR 144
                       L+       I    +V+   +    KTK  V   +
Sbjct: 124 SAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALK 170


>gi|169929938|gb|ACB05643.1| 50S ribosomal protein L4 [Leptospira weilii serovar Sarmin]
 gi|169929941|gb|ACB05645.1| 50S ribosomal protein L4 [Leptospira weilii serovar Celledoni]
          Length = 63

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
          ++    + +G+    I +   +F  K     +   ++ ++   R G   +K RSEV   G
Sbjct: 1  MKAQKYSKEGKLVSEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSEVRGGG 60

Query: 62 SKM 64
           K 
Sbjct: 61 KKP 63


>gi|323310204|gb|EGA63396.1| Rpl4ap [Saccharomyces cerevisiae FostersO]
          Length = 154

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 10/143 (6%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPXPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG    ++    G G  R    +      GG+ F P          +    +  A  
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATA 123

Query: 112 HALSDKFCSNDIMVIDNLVSKEC 134
            A++    ++ ++   + V K  
Sbjct: 124 SAIAATAVASLVLARGHRVEKIP 146


>gi|169929920|gb|ACB05631.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar
          Hardjo-bovis]
 gi|169929923|gb|ACB05633.1| 50S ribosomal protein L4 [Leptospira borgpetersenii serovar
          Hardjo-bovis]
 gi|169929926|gb|ACB05635.1| 50S ribosomal protein L4 [Leptospira santarosai serovar Tropica]
 gi|169929929|gb|ACB05637.1| 50S ribosomal protein L4 [Leptospira santarosai serovar Shermani]
 gi|169929950|gb|ACB05651.1| 50S ribosomal protein L4 [Leptospira alexanderi serovar Mengla]
 gi|169929953|gb|ACB05653.1| 50S ribosomal protein L4 [Leptospira alexanderi serovar
          Manzhuang]
 gi|169929956|gb|ACB05655.1| 50S ribosomal protein L4 [Leptospira meyeri serovar Ranarum]
          Length = 63

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
          ++    + +G+    I +   +F  K     +   ++ ++   R G   +K RSEV   G
Sbjct: 1  MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSEVRGGG 60

Query: 62 SKM 64
           K 
Sbjct: 61 KKP 63


>gi|70606411|ref|YP_255281.1| 50S ribosomal protein L4P [Sulfolobus acidocaldarius DSM 639]
 gi|76363365|sp|Q4JB41|RL4_SULAC RecName: Full=50S ribosomal protein L4P
 gi|68567059|gb|AAY79988.1| 50S ribosomal protein L4E [Sulfolobus acidocaldarius DSM 639]
          Length = 266

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 52/254 (20%)

Query: 3   ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
           ++SV +L G     I +    F+   ++ ++ RV   +  +          +  +  +  
Sbjct: 9   KVSVLDLKGNQLEEIELPL-FFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALS 67

Query: 58  AYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALS- 115
                 +        +  ++       GG  AF P      V  +  K + L +  AL+ 
Sbjct: 68  FGINLGIARVPRVKGSGEAAL-APNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAA 126

Query: 116 -----------DKFCSNDIMVIDNLVSK-ECKTKYLVTRFR------------------- 144
                       +F SN++ +I     +   K K ++   +                   
Sbjct: 127 TADPNFVKARGHRFTSNNVPIILVDDFENISKAKEIMDILKSIGVVDDIKRVKESKGVRA 186

Query: 145 --------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----L 192
                      ++   +I           +A NIP +N++    ++V  +          
Sbjct: 187 GKGKMRGRRYQIAKGPLIVVSNHKSPVVESASNIPGVNVVSANLVSVIHLAPGGHPGRLT 246

Query: 193 VLSKSAIEALEDRF 206
           + +KS+I  L  RF
Sbjct: 247 IYTKSSINILRQRF 260


>gi|326578099|gb|ADZ95693.1| 60S ribosomal protein L4 [Nosema bombycis]
          Length = 192

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 28/170 (16%)

Query: 3   ELSVRNLDGEDKG-VISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV---- 57
           ++++ NLDG      + + + +  ++ +  I+  V   +    R   + SK         
Sbjct: 4   KINIYNLDGNTVKDTVEMPD-VMTIEVRPDIIETVHSLERLNLRQPYAVSKYAGMQHSAA 62

Query: 58  -AYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALR 111
              TG  M       G+G  R    + + F   G+   P          +   +R +A+ 
Sbjct: 63  SWGTGRAMARCPRVAGSGTRRAGQGAFANFCRKGRMAHPTKTTRRWCRKVNLNLRRIAIA 122

Query: 112 HAL--SDK-------------FCSNDIMVIDNLVSKECKTKYLVTRFRAL 146
            A+  S K                  ++V D  V    KTK      +  
Sbjct: 123 MAVAASSKPSFVQARGHKVDNVKMIPLIVSDE-VMSLTKTKDAFELIQNF 171


>gi|71017629|ref|XP_759045.1| hypothetical protein UM02898.1 [Ustilago maydis 521]
 gi|46098714|gb|EAK83947.1| hypothetical protein UM02898.1 [Ustilago maydis 521]
          Length = 333

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 54/219 (24%)

Query: 42  WRKRIGCS-----KSKGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPV 93
             KR   +       +  +E   TG    ++    G G  R    +      GG  F P 
Sbjct: 15  KNKRQPYAVSTKAGHQTSAESWGTGRAVARIPRVGGGGTHRSGQAAFGNMVRGGHMFAPT 74

Query: 94  P--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTK 137
                      +  +  A              L+      ++    +V+ +      KTK
Sbjct: 75  KLWRRWFIKTNQNQKRYATASALAATAVPSLVLARGHRVEELEEIPLVVADAAESLTKTK 134

Query: 138 YLVTRFRALDLSNALIIDGC--------------------------QLDRNFQLAARNIP 171
             +   ++++  N ++                                D     A RN+P
Sbjct: 135 EAIALLKSVNAYNDVVKVSNSRKIRAGVGKLRNRRHTQRRGPLVIYNKDAGIVKAFRNVP 194

Query: 172 NINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
            + L  V+ +N+  +         ++ ++SA   L++ F
Sbjct: 195 GVELCSVERLNLLQLAPGGHLGRFVIFTQSAFGRLDEVF 233


>gi|169929944|gb|ACB05647.1| 50S ribosomal protein L4 [Leptospira kirschneri serovar Mozdok]
 gi|169929947|gb|ACB05649.1| 50S ribosomal protein L4 [Leptospira kirschneri serovar Bim]
          Length = 63

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
          ++    + +G+    I +   +F  K     +   ++ ++   R G   +K RSEV   G
Sbjct: 1  MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKSENANLRSGNHATKTRSEVRGGG 60

Query: 62 SKM 64
           K 
Sbjct: 61 KKP 63


>gi|221103288|ref|XP_002168893.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 426

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 82  QFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDI-MVIDNLVSKECKTKYLV 140
               GG + GP P    + LP KVR + LR ALS KF   D+ +V D     E      V
Sbjct: 244 LIYKGGVSGGPKPKDYSYELPFKVRRMGLRTALSCKFAQGDLTVVEDYNNLTETNFSDAV 303

Query: 141 TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIE 200
           T         + +      +            I+  P   ++VY +L  SKLVLS  A+ 
Sbjct: 304 TSLSL----QSSLFVDGFENDYLDSLVSGFEKIDFKPALLLHVYGMLIRSKLVLSLQAVR 359

Query: 201 ALEDRF 206
            LE++ 
Sbjct: 360 ILEEKL 365


>gi|323338838|gb|EGA80053.1| Rpl4ap [Saccharomyces cerevisiae Vin13]
          Length = 111

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 8/106 (7%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++V +L GE          +F+   +  I+  V    +  KR        +  +  +E
Sbjct: 4   PQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAE 63

Query: 57  VAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVH 99
              TG    ++    G G  R    +      GG+ F P       
Sbjct: 64  SWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKW 109


>gi|307102863|gb|EFN51129.1| hypothetical protein CHLNCDRAFT_37552 [Chlorella variabilis]
          Length = 305

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 60/226 (26%), Gaps = 60/226 (26%)

Query: 40  QSWRKRIGCS-----KSKGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
            +   R   +       +  +E   TG    ++    G G  R    +      GG  + 
Sbjct: 1   MAKNHRQAYAVKAKAGHQTAAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGHMYS 60

Query: 92  PVP--IIGVHALPKKVRSL---------------ALRHALSDKFCSNDIMVIDNLVSKEC 134
           P          +    +                   R    D      ++V D   S   
Sbjct: 61  PTKTWRRWHRKINVNQKRYAVVSAIAASALPALVMARGHRIDGVPEVPLVVSDAAES-IT 119

Query: 135 KTKYLVTRF------------RALDLSNALIIDG------------------CQLDRNFQ 164
           KTK  V               +       L+  G                     D    
Sbjct: 120 KTKAAVELLTKVGAIADVDKAKVRPEGRRLVCLGFFRVYTTLSGGRKGPLVIYGNDSGIS 179

Query: 165 LAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
            A RN+P + +  V+ +N+  +     L    + +KSA+E L+  F
Sbjct: 180 RAFRNLPGVEVCSVERLNLLQLAPGGHLGRFCIWTKSAVEKLDAIF 225


>gi|261885690|ref|ZP_06009729.1| 50S ribosomal protein L4 [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 119

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 88  KAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALD 147
                          KK + LAL  AL+DK  +  +  +DN+     KTK  ++    L 
Sbjct: 2   HKGPKNNRHYDQKANKKQKRLALEFALNDKGANGKLYAVDNIQISSGKTKDAISISNKLG 61

Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALED 204
           + +ALII   +LD    LA +N+ N  ++    +N Y +   S ++  K+A++++  
Sbjct: 62  VRDALIIK-NELDAKTLLAIKNLANCYVIDASEVNAYLVSVYSAVIAEKAALQSIVK 117


>gi|169929908|gb|ACB05623.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Lai]
 gi|169929911|gb|ACB05625.1| 50S ribosomal protein L4 [Leptospira interrogans serovar
          Icterohaemorrhagiae]
 gi|169929914|gb|ACB05627.1| 50S ribosomal protein L4 [Leptospira interrogans serovar
          Hardjo-prajitno]
 gi|169929917|gb|ACB05629.1| 50S ribosomal protein L4 [Leptospira interrogans serovar Malaya]
 gi|169929932|gb|ACB05639.1| 50S ribosomal protein L4 [Leptospira noguchii serovar Proechymis]
 gi|169929935|gb|ACB05641.1| 50S ribosomal protein L4 [Leptospira noguchii serovar Panama]
          Length = 63

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTG 61
          ++    + +G+    I +   +F  K     +   ++ ++   R G   +K RS V+  G
Sbjct: 1  MKAQKYSKEGKLISEIELPSALFESKLSVASIYEAIKAENANLRSGNHATKTRSMVSGGG 60

Query: 62 SKM 64
           K 
Sbjct: 61 KKP 63


>gi|301500960|ref|YP_003795425.1| ribosomal protein L4 [Alveolata sp. CCMP3155]
 gi|300069506|gb|ADJ66613.1| ribosomal protein L4 [Chromerida sp. RM11]
          Length = 236

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 11/154 (7%)

Query: 50  KSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV--HALPKKVRS 107
            + GRS ++ +  K++ QKGTGRAR  SK+   ++GGG  FGP            KK+  
Sbjct: 64  HTLGRSSISGSKRKLWRQKGTGRARAGSKTGPLWKGGGVVFGPRGERTSGTQKRNKKLWK 123

Query: 108 LALRHALSDKFCSNDIMV------IDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ--- 158
            AL + L DK    ++++       +   +     K L+   R +    + +        
Sbjct: 124 AALNYVLYDKLKHENLVLMLAPWAWEINPNPLPSRKVLLKGLRHILQDKSWLFVVPNGTC 183

Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
           LD   +    +   + +     +   DILR  K+
Sbjct: 184 LDTYRRAFFEDDMKVTVRSRSTVKCIDILRAEKV 217


>gi|330040445|ref|XP_003239916.1| 60S ribosomal protein L1 [Cryptomonas paramecium]
 gi|327206842|gb|AEA39018.1| 60S ribosomal protein L1 [Cryptomonas paramecium]
          Length = 304

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 78/228 (34%), Gaps = 38/228 (16%)

Query: 2   IELSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
           +++++ +         + +  ++F  K +  I+  V       +R        + +   +
Sbjct: 6   VKVNIYSCQNRTKVDQVHLP-NVFISKIKPNIVNFVHSNMRMNRRQPHSVNNKAGTMTSA 64

Query: 56  EVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLAL 110
               TG    ++    G+G  +    +      GG+ FGP        H + K  R  AL
Sbjct: 65  SSWGTGRALARVPRISGSGTHKSGQGATVNSCRGGRIFGPNSIWRKWHHKINKNQRKQAL 124

Query: 111 RHAL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDG 156
             A+          +  +  N+I    +V++N V    KTK       ++ +     ++ 
Sbjct: 125 ESAIAATGISALIAAHGYNLNNIPEIPLVVENSVELLKKTKNAQKVLSSIGIRKNNKLNC 184

Query: 157 CQ------------LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
            +            + +      RNI ++    +  +N++ +     L
Sbjct: 185 KKKTYSSSCKKLLIIYQKNAKCFRNIFDVETCRITTLNLFKLAPGGHL 232


>gi|268323276|emb|CBH36864.1| 50S ribosomal protein L4P [uncultured archaeon]
          Length = 268

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 72/259 (27%), Gaps = 63/259 (24%)

Query: 5   SVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVAY 59
            V +L G     I++   +F  + +  ++   +      +         +  K  +E   
Sbjct: 8   KVVDLSGNFVREITLPP-VFMEEYRPDLIKTAVLAMQSNRLQPKGTDLLAGRKTSAESWG 66

Query: 60  TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFC 119
            G  +         R ++    Q  GG +A  P     +     K        +      
Sbjct: 67  PGRAVARVPRIKDGRRAA-RAPQTVGGRRAHPPKVEKILKRKINKKERRKAIRSAIAAAI 125

Query: 120 SNDI---------------MVIDNLVSKECKTKYLVTRFRALDLSNALII---------- 154
           + +                +V+++  +   KT  +    +++ +   ++           
Sbjct: 126 NPEFVKQRGHMFNTDVELPIVVEDSFASLEKTSEVTEFLKSVGVWADVLRAKGRKIRAGR 185

Query: 155 ---------------------------DGCQLDRNFQLAARNIPNINLLPVQGINVYDIL 187
                                      +    D+     A N+P +++  V  +N     
Sbjct: 186 GKMRGRRYKTKKSILIVISGDEGTVESEHPSRDKRILKGAENLPGVDISYVSKLNAELFA 245

Query: 188 ---RCSKL-VLSKSAIEAL 202
                 +L + ++S+I  L
Sbjct: 246 PGTHPGRLTIWTESSINKL 264


>gi|73536706|ref|XP_847772.1| ribosomal protein L1a [Leishmania major strain Friedlin]
          Length = 432

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 64/228 (28%), Gaps = 51/228 (22%)

Query: 4   LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
           +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 7   VSVYSASSDSVVGTCPLP-AVFTAPIRSDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRISGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
                      +S      ++    +V+++ +    KTK  +   +A+   + +      
Sbjct: 126 ALAASSVPSLVMSRGHQIGNVPEVPLVVEDSIQGYEKTKEAMAFLKAIAAIDDVNRVNDS 185

Query: 159 -------------------------LDRNFQLAARNIPNINLLPVQGI 181
                                     +     A RNI  ++L  V  +
Sbjct: 186 REIRAGRGKMRNRRYVARRGPMLVMPNNKGTRAFRNIFGLDLANVSAL 233


>gi|253741651|gb|EES98516.1| Ribosomal protein L4 [Giardia intestinalis ATCC 50581]
          Length = 316

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 64/251 (25%), Gaps = 48/251 (19%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV--A 58
             + V    G       +    +F +  +  I+  V        R   + S+       A
Sbjct: 3   PTVKVFGATGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH---- 112
           ++           R      + + F  GG    P          +    R  A+      
Sbjct: 61  HSWGPGRAVARLPRKHGGIGAYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAA 120

Query: 113 --------ALSDKFCSNDIMVIDNLVSKECKTKYLVT----------------------- 141
                   A   +      + +        KTK  +                        
Sbjct: 121 SANASLVEARGHRIADVPSIPLVVDTDNVTKTKDAMAIIKAVGVLRDVERCKDSRHIRAG 180

Query: 142 --RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLS 195
             + R                 +     RNIP ++L  V  I + ++   S     ++ +
Sbjct: 181 RGKMRNRRYITRKGPLVIYNTEDVARGFRNIPGVDLCHVSSIRLLELAPGSHPGRLILWT 240

Query: 196 KSAIEALEDRF 206
           KSA  +L+D +
Sbjct: 241 KSAFASLDDVY 251


>gi|149020532|gb|EDL78337.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_c
           [Rattus norvegicus]
          Length = 157

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 9   LDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQK 68
            + E  G+  +  D+FA  P+  IL +V  WQ   KRI  +K+K R+E   T        
Sbjct: 72  FEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAEA--TVHHPLQHP 129

Query: 69  GTGRARHSSKSVSQFRGGGKA 89
                + S      +      
Sbjct: 130 VPAIKQISDIPGHLWPTPSHT 150


>gi|119598632|gb|EAW78226.1| hCG2021224 [Homo sapiens]
          Length = 230

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 46/191 (24%)

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH------- 112
           +++   +G G  R    +      GG+ F P          +    +  A+         
Sbjct: 2   ARIPRVRGGGTHRSGQGAFGNMCRGGRRFAPTKTWRRWHRRVNTTQKRYAICSALAASAL 61

Query: 113 ---ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN--------------- 150
               +S      ++    +V ++ V    KTK  V   + L   N               
Sbjct: 62  PALVMSKGHRIEEVPELPLVFEDKVEGYKKTKEAVLLLKKLKAWNDIEKVYASQRMRAGK 121

Query: 151 -----------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLS 195
                        +      D     A RNIP I LL V  +N+  +     +    + +
Sbjct: 122 GKMRNRRRIQRRGLCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWT 181

Query: 196 KSAIEALEDRF 206
           +SA   L++ +
Sbjct: 182 ESAFRKLDELY 192


>gi|115712810|ref|XP_001182016.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115938904|ref|XP_001186404.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 89

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
           NF  A   I   N+L  +G+NVY +L+   LVL+  A+  LE R 
Sbjct: 4   NFLEAVNGIKTFNVLSAEGLNVYSMLKHKTLVLTLDAVNLLEQRL 48


>gi|242068967|ref|XP_002449760.1| hypothetical protein SORBIDRAFT_05g022760 [Sorghum bicolor]
 gi|241935603|gb|EES08748.1| hypothetical protein SORBIDRAFT_05g022760 [Sorghum bicolor]
          Length = 79

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 145 ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSA 198
             D    L++DG  +D+  +LA +N+  +N+LP  G++VY IL+   L ++++A
Sbjct: 1   MDDTKKVLLVDGGDIDKILRLATQNLHYVNVLPSIGLDVYSILQHDTLAMTQAA 54


>gi|71403434|ref|XP_804517.1| 60S ribosomal protein L14 [Trypanosoma cruzi strain CL Brener]
 gi|70867533|gb|EAN82666.1| 60S ribosomal protein L14, putative [Trypanosoma cruzi]
          Length = 199

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 54/166 (32%), Gaps = 26/166 (15%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57
           +SV +  + +  G   +   +F    +  I+  V    +   R   + ++       +E 
Sbjct: 7   VSVYSASEDKVVGTCPLP-AVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 ----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFR 144
                      +S      ++    +V+++ V    KTK  +   +
Sbjct: 126 ALAASSVPALVMSRGHKIENVAEVPLVVEDAVQGYEKTKEAMAFLK 171


>gi|169839689|ref|ZP_02872877.1| 50S ribosomal protein L4 [candidate division TM7 single-cell
          isolate TM7a]
          Length = 58

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 26/50 (52%)

Query: 44 KRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPV 93
           R G + +K R+EV   G K + QKGTGRAR  S       GGG   GP 
Sbjct: 1  ARQGSASTKTRAEVRGGGRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPN 50


>gi|159117180|ref|XP_001708810.1| Ribosomal protein L4 [Giardia lamblia ATCC 50803]
 gi|157436924|gb|EDO81136.1| Ribosomal protein L4 [Giardia lamblia ATCC 50803]
          Length = 316

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 64/251 (25%), Gaps = 48/251 (19%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV--A 58
             + V    G       +    +F +  +  I+  V        R   + S+       A
Sbjct: 3   PTVKVFGPTGTQV--AELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH---- 112
           ++           R      + + F  GG    P          +    R  A+      
Sbjct: 61  HSWGPGRAVARLPRKHGGIGAYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAA 120

Query: 113 --------ALSDKFCSNDIMVIDNLVSKECKTKYLVT----------------------- 141
                   A   +      + +        KTK  +                        
Sbjct: 121 SANAALVEARGHRIADVPSIPLVVDTDNVTKTKDALAIIKAVGVLRDVERCKDSRHIRAG 180

Query: 142 --RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLS 195
             + R                 +     RN+P ++L  V  I + ++   S     ++ +
Sbjct: 181 RGKMRNRRYITRKGPLVIYNTEDVARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWT 240

Query: 196 KSAIEALEDRF 206
           KSA  +L+D +
Sbjct: 241 KSAFASLDDVY 251


>gi|253734700|ref|ZP_04868865.1| possible ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253727325|gb|EES96054.1| possible ribosomal protein L4 [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 71

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 63  KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSND 122
           K + QKGTGRAR  S     +R GG  F          + KK+   AL+  LS+    + 
Sbjct: 1   KPWRQKGTGRARSGSIKSPIWRSGGVTFAARSQDHSQKVNKKMYRGALKSILSELVRQDR 60

Query: 123 IMVIDNLVSKE 133
           ++V++    + 
Sbjct: 61  LIVVEKFSVEA 71


>gi|94991545|ref|YP_599644.1| 50S ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096]
 gi|94545053|gb|ABF35100.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS2096]
          Length = 109

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 22/43 (51%)

Query: 1  MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWR 43
          M  + + +  G++   + +++ IF ++P + ++  V+  Q   
Sbjct: 1  MANVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRAS 43


>gi|118430943|ref|NP_147063.2| 50S ribosomal protein L4P [Aeropyrum pernix K1]
 gi|150421649|sp|Q9YFM1|RL4_AERPE RecName: Full=50S ribosomal protein L4P
 gi|116062269|dbj|BAA79140.2| 50S ribosomal protein L4P [Aeropyrum pernix K1]
          Length = 272

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 80/254 (31%), Gaps = 53/254 (20%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI-----GCSKSKGRSEVA 58
           + V +  G +K  + +   IF    ++ ++ R    +   +         +  +  +   
Sbjct: 16  VPVYDERGGEKDSVVLP-QIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSL 74

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALPKKVRSLALRHALSDK 117
             G  +        +  ++  V+  RGG  A  P    +    + KK + LA   A+S  
Sbjct: 75  GVGRGVARVPRIKGSLRAAL-VNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISAT 133

Query: 118 FCSNDI-------------MVIDNLVSKECKTKYLVTRF--------------------- 143
              + +             +V+D+ V  +  T                            
Sbjct: 134 SREDLVRQRGHRFSAETLPIVLDSSVLAKISTAREARSLLESVGVYEDVLRAKEGKRYNA 193

Query: 144 -------RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---RCSKL- 192
                  R   +  +++           LA + +P ++++    ++V  +       +L 
Sbjct: 194 GKGKMRGRRYKVPKSVLFVLEDPRSPLALAVKGMPGVDVVTPTLLSVLHLAPGGHPGRLT 253

Query: 193 VLSKSAIEALEDRF 206
           + +  A++ L  RF
Sbjct: 254 IYTTEALKLLSRRF 267


>gi|161528316|ref|YP_001582142.1| 50S ribosomal protein L4P [Nitrosopumilus maritimus SCM1]
 gi|160339617|gb|ABX12704.1| ribosomal protein L4/L1e [Nitrosopumilus maritimus SCM1]
          Length = 271

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 76/257 (29%), Gaps = 56/257 (21%)

Query: 1   MIELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKR--IGCSKSKGRSEVA 58
           M + +V    G   G + +   +F+   ++ ++ +     +  K    G   + G+  VA
Sbjct: 1   MTKTAVYTTTGTKDGEVELP-AVFSTPFRRELIHKAFTNLTSHKFQPQGRHPTAGQDVVA 59

Query: 59  YTGSKMYVQK---------GTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLA 109
            +      Q          G G  +     V+  RGG +A  P+    ++    K     
Sbjct: 60  DSNDPPTGQGVSRVARAQGGGGGRQGQGAEVASTRGGRQAHPPIVEKVIYKKLNKKEKKL 119

Query: 110 LRHAL-----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFR---------- 144
              +            S       I    +V+ + +    KT  +               
Sbjct: 120 ALCSAIAATASKDRVESRGHKVEGIESFPIVVSDDIESVSKTSEVSKILDSLKLTQDVQR 179

Query: 145 ---------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRC 189
                                  ++   +   N   A   +P +    V+ ++V D+   
Sbjct: 180 LETRKARSGQSRLRGRSKKVGKSVLFVTKDASNISKAIGALPGVEATSVKDLSVLDLAPG 239

Query: 190 SK----LVLSKSAIEAL 202
           S      V SKSAIE +
Sbjct: 240 SDPIRLTVYSKSAIEEI 256


>gi|198415679|ref|XP_002127379.1| PREDICTED: similar to ribosomal protein L4, partial [Ciona
          intestinalis]
          Length = 78

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 4  LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEVA 58
          +SV +  G   G I++   +F    +  I+  V    S   R        +  +  +E  
Sbjct: 8  VSVYSEKGVASGSITLP-AVFKAPIRPDIVNFVHTNISKNHRQAYAVKSIAGEQTSAESW 66

Query: 59 YTGSKMYVQKG 69
           TG  +     
Sbjct: 67 GTGRAVARIPR 77


>gi|153217581|ref|ZP_01951262.1| 50S ribosomal protein L4 [Vibrio cholerae 1587]
 gi|124113469|gb|EAY32289.1| 50S ribosomal protein L4 [Vibrio cholerae 1587]
          Length = 44

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 27/43 (62%)

Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            LAARN+  +++  V GI+   ++   K++++ +A++ +E+  
Sbjct: 1   FLAARNLYKVDVRDVTGIDPVSLIAFDKVLMTAAAVKQVEEML 43


>gi|118576053|ref|YP_875796.1| ribosomal protein L4 [Cenarchaeum symbiosum A]
 gi|118194574|gb|ABK77492.1| ribosomal protein L4 [Cenarchaeum symbiosum A]
          Length = 271

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 71/255 (27%), Gaps = 55/255 (21%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI--GCSKSKGRSEVAY 59
           ++ +V  LDG     I++   +F    ++ ++ +             G   + G    A 
Sbjct: 1   MKAAVLGLDGSKGKEITLPP-VFGTPYRRDLIKKAYTILDTHHFQPKGTHPTAGMDVSAD 59

Query: 60  TGSKMYVQKGTGRARHS---------SKSVSQFRGGGKAFGPVPIIGVHALPKK-----V 105
           + +          AR           +  V+  RGG +A  P     +H    K      
Sbjct: 60  SLNPPTGHGQARIARMKGGGGRRRGEAGEVASIRGGRQAHPPKVQKVIHKKINKKEKKLA 119

Query: 106 RSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFR--------------------- 144
              A+    S    +    +ID +      +  + +  +                     
Sbjct: 120 LCSAIAATASKSTVAGRGHIIDGIELPIVISDDIESVSKASEVRKILSALGLFADVNRLE 179

Query: 145 -------------ALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDIL---- 187
                                I+     D     A    P +   P + ++V D+     
Sbjct: 180 GRKPRTGKSALRGRPKKIGKSILFVVGADGPVIRAVGGFPGVTARPARDLSVLDLAPGAE 239

Query: 188 RCSKLVLSKSAIEAL 202
                V SK+AIE+L
Sbjct: 240 PARLTVYSKAAIESL 254


>gi|291334062|gb|ADD93735.1| ribosomal protein L4/L1 family [uncultured marine bacterium
           MedDCM-OCT-S05-C114]
          Length = 84

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 123 IMVIDNLVSKECKTKYLVTRF-RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
           ++VI++      KTK L     +    S  +++   + + N  LA RN+    L     +
Sbjct: 1   MIVIEDFSIDSPKTKLLNGVITKIAPDSKKVLLVSDEHNDNTSLAGRNLSYARLSSTPDL 60

Query: 182 NVYDILRCSKLVLSKSAIEALED 204
              DI++  K++ S   I++L +
Sbjct: 61  GPVDIVQADKIIFSVKGIDSLLE 83


>gi|282933501|ref|ZP_06338874.1| 50S ribosomal protein L4 [Lactobacillus jensenii 208-1]
 gi|281302375|gb|EFA94604.1| 50S ribosomal protein L4 [Lactobacillus jensenii 208-1]
          Length = 38

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 171 PNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
            N+ ++PV G+NV D +   KL+L++ A++ +E+  
Sbjct: 2   ENVKVVPVNGLNVVDAVNYDKLILTQDAVKRIEEVL 37


>gi|302506348|ref|XP_003015131.1| hypothetical protein ARB_06891 [Arthroderma benhamiae CBS 112371]
 gi|291178702|gb|EFE34491.1| hypothetical protein ARB_06891 [Arthroderma benhamiae CBS 112371]
          Length = 384

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 64/235 (27%), Gaps = 60/235 (25%)

Query: 32  ILARVLRWQSWRKRIGCSKS-----KGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQF 83
           +   V    +  KR   + S     +  +E   TG    ++    G G  R    +    
Sbjct: 46  LTRSVHTGIAKNKRQPYAVSEKAGEQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNM 105

Query: 84  RGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC------- 134
              G+ F P          +    R  A   AL+       +    + V           
Sbjct: 106 CRSGRMFAPTKVWRKWHQKVNVGQRRFATASALAASSVPALLFARGHRVDNVPEVPLVVD 165

Query: 135 ----------KTKYLVTRFR----------------------------ALDLSNALIIDG 156
                     KTK  V   +                                   L+I  
Sbjct: 166 SKCFQGDALTKTKAAVALLQAVGAGADLVKVKESRKVRAGKGKLRGRRYRQRRGPLVIYN 225

Query: 157 CQLD-RNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
            ++D +    A RNIP +    V  +N+  +     L    V S +A  AL++ +
Sbjct: 226 PEVDGKELVRAFRNIPGVETSSVFSLNLLQLAPGGHLGRFIVWSSAAFSALDEIY 280


>gi|297745940|emb|CBI15996.3| unnamed protein product [Vitis vinifera]
          Length = 99

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 35/65 (53%)

Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEA 201
           +   +D     +    ++  N +L++RNI  + +L  + +N++DIL   KLVL++  ++ 
Sbjct: 2   KRWGIDPKEKSMFLMTEVSDNVRLSSRNIGTLKMLTPRTLNLFDILNSDKLVLTQETVDY 61

Query: 202 LEDRF 206
           L   +
Sbjct: 62  LNRMY 66


>gi|308159492|gb|EFO62020.1| Ribosomal protein L4 [Giardia lamblia P15]
          Length = 316

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 63/251 (25%), Gaps = 48/251 (19%)

Query: 2   IELSVRNLDGEDKGVISVS-EDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV--A 58
             + V    G       +    +F +  +  I+  V        R   + S+       A
Sbjct: 3   PTVKVFGPTGTQV--AELPRPRVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTA 60

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH---- 112
           ++           R      + + F  GG    P          +    R  A+      
Sbjct: 61  HSWGPGRAVARLPRKHGGIGAYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAA 120

Query: 113 --------ALSDKFCSNDIMVIDNLVSKECKTKYLVT----------------------- 141
                   A   +      + +        KTK  +                        
Sbjct: 121 SANASLVEARGHRIADVPSIPLVVDTDNVTKTKDALAIIKAVGVLRDVERCKDSRHIRAG 180

Query: 142 --RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLS 195
             + R                 +     RNI  ++L  V  I + ++   S     ++ +
Sbjct: 181 RGKMRNRRYITRKGPLVIYNTEDVARGFRNISGVDLCHVSSIRLLELAPGSHPGRLILWT 240

Query: 196 KSAIEALEDRF 206
           KSA  +L+D +
Sbjct: 241 KSAFASLDDVY 251


>gi|145628332|ref|ZP_01784133.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21]
 gi|145640872|ref|ZP_01796454.1| 50S ribosomal protein L3 [Haemophilus influenzae R3021]
 gi|144980107|gb|EDJ89766.1| 50S ribosomal protein L4 [Haemophilus influenzae 22.1-21]
 gi|145274386|gb|EDK14250.1| 50S ribosomal protein L3 [Haemophilus influenzae 22.4-21]
          Length = 49

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRS 55
          +EL V   +      ++VSE  F  +  + ++ +V+   +   R G    K   
Sbjct: 1  MELQVVGANA-----LTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKNSC 49


>gi|47199984|emb|CAF87922.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 72

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 156 GCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAIEALEDRF 206
             +L  +   A   + +IN++P  G+NV+ +L+   LVL+   +  LED+ 
Sbjct: 1   SEELPEDVLQATATLKSINVIPALGLNVHSLLKHQALVLTLETLRFLEDKL 51


>gi|332024885|gb|EGI65073.1| 60S ribosomal protein L4 [Acromyrmex echinatior]
          Length = 364

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 49/206 (23%)

Query: 50  KSKGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKK 104
             +  +E   TG    ++   +G G  R    +      GG+ F P        H +   
Sbjct: 5   GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHHHVNVN 64

Query: 105 VRSLALRHAL----------SDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSN 150
            +  AL  A+          S      ++    +V+ + + +  KTK  V   R +   N
Sbjct: 65  QKRYALVSAIAASGVPALVQSKGHLIQEVPEFPLVVSDKIQEYTKTKQAVIFLRRIKAWN 124

Query: 151 ALIIDGCQL--------------------------DRNFQLAARNIPNINLLPVQGINVY 184
            +                                 D+  + A RNIP ++L+ +  +N+ 
Sbjct: 125 DIQKVYKSQRFRAGKGKMRNRRRIQRRGPLIVYGQDQGIRKAFRNIPGVSLMNINKMNLL 184

Query: 185 DILRCSK----LVLSKSAIEALEDRF 206
            +         ++ +KSA + L+  +
Sbjct: 185 KLAPGGHVGRFVIWTKSAFDQLDALY 210


>gi|302807170|ref|XP_002985298.1| hypothetical protein SELMODRAFT_424334 [Selaginella moellendorffii]
 gi|300147126|gb|EFJ13792.1| hypothetical protein SELMODRAFT_424334 [Selaginella moellendorffii]
          Length = 343

 Score = 51.6 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAY 59
           + L   N + EDK  + ++EDIF +  ++ I+  V++WQ  ++R G    K R EVA 
Sbjct: 289 MVLPATNWEQEDKRTLPIAEDIFDVPMRKDIVQHVVKWQRAKRRKGT---KTRGEVAG 343


>gi|76156125|gb|AAX27356.2| SJCHGC04542 protein [Schistosoma japonicum]
          Length = 167

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 14  KGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGS-KMYVQKGTGR 72
            G++ +  DIFA+ P+  ++ + L WQ+  + I       R+E+ Y    K + QK   +
Sbjct: 96  VGMVDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCITTRAELPYGTRKKPWPQKKLEK 155


>gi|71409315|ref|XP_807010.1| 60S ribosomal protein L4 [Trypanosoma cruzi strain CL Brener]
 gi|70870912|gb|EAN85159.1| 60S ribosomal protein L4, putative [Trypanosoma cruzi]
          Length = 163

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 12/122 (9%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSK-----GRSEV 57
           +SV +  + +  G+  +   +F    +  I+  V    +   R   + ++       +E 
Sbjct: 7   VSVYSASEDKVVGICPLP-AVFTAPIRHDIVQFVHTNMAKNSRQAYAVNRLSGMNHSAES 65

Query: 58  AYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH 112
             TG    ++    G G +   + +      GG+ F P          +    +  A+  
Sbjct: 66  WGTGRAVARIPRIGGGGTSTSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVS 125

Query: 113 AL 114
           AL
Sbjct: 126 AL 127


>gi|13310846|gb|AAK18638.1|AF250389_4 ribosomal protein L4 [Candidatus Carsonella ruddii]
          Length = 172

 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 72/206 (34%), Gaps = 37/206 (17%)

Query: 2   IELSVRNLDGEDKGVISVSEDI-FALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYT 60
           + L + N+             I F LK     L        ++K+      K R  +  +
Sbjct: 1   MNLPILNIK---------PLFINFFLKINIFSLYLSFLNIFFKKKG---YKKNRRLIKGS 48

Query: 61  GSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCS 120
             K + QKG GRAR  SK    ++GGG +F          +   +           K   
Sbjct: 49  NKKPWPQKGMGRARAGSKKSPIWKGGGVSFSN---YLFKKINLNL-----------KNIF 94

Query: 121 NDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQG 180
             ++ +    +K    +  +  F     +N       + + NF L  +NI          
Sbjct: 95  KSLLFLSIFSNKIFIFEEFLIFFLINIFNNKNYCFFWEQNDNFFL--KNIKK-------- 144

Query: 181 INVYDILRCSKLVLSKSAIEALEDRF 206
           IN +D L+   + +SK +   L ++F
Sbjct: 145 INYFDFLKFKIIFISKKSFFYLLNKF 170


>gi|6441068|dbj|BAA78600.1| 60S ribosomal protein L4 [Chlamydomonas sp. HS-5]
          Length = 363

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 59/217 (27%), Gaps = 54/217 (24%)

Query: 40  QSWRKRIGCS-----KSKGRSEVAYTGS---KMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
            +  KR   +       +  +E   TG    ++    G G  R    +      GG+ F 
Sbjct: 1   MAKNKRQAYAVFMKAGHQTAAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFA 60

Query: 92  PVP--IIGVHALPKKVRSLALRHALSDKFCSNDIM--------------VIDNLVSKECK 135
           P          +    +  A+  AL+     + +M              V+ + V    K
Sbjct: 61  PTKTWRRWHRKVNLTQKRHAVASALAASALPSLVMARGHRIEQVPEVPLVLSDAVESVSK 120

Query: 136 TKYLVTRFR--------------------------ALDLSNALIIDGCQLDRNFQLAARN 169
           T   +   +                                   +     D     A RN
Sbjct: 121 TSKALEILKKIGAAPDVEKAKASKQLRRGKGKMRNRRYTLRKGPLIVFANDSGISRAFRN 180

Query: 170 IPNINLLPVQGINVYDILRCSKL----VLSKSAIEAL 202
           +  + +  V  +N+  +     +    V +KSA + L
Sbjct: 181 LTGVEVTSVDHLNLLQLAPGGHMGRFCVWTKSAFDKL 217


>gi|6979694|gb|AAF34602.1| Irb4 [Vibrio cholerae]
          Length = 83

 Score = 50.5 bits (119), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 35/76 (46%)

Query: 68  KGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKFCSNDIMVID 127
           K TGRAR  +     +R GG  F   P      + KK+   A+++ LS+      ++V++
Sbjct: 8   KSTGRARAGTIRSPIWRTGGVTFASKPQDHSQKVNKKMFRGAMKNILSELARQERLIVVE 67

Query: 128 NLVSKECKTKYLVTRF 143
           N   +  K K  V + 
Sbjct: 68  NFSVQAPKAKAPVAKL 83


>gi|24380366|ref|NP_722321.1| 50S ribosomal protein L4 [Streptococcus mutans UA159]
 gi|24378385|gb|AAN59627.1|AE015024_19 50S ribosomal protein L4 [Streptococcus mutans UA159]
          Length = 31

 Score = 49.7 bits (117), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 19/30 (63%)

Query: 1  MIELSVRNLDGEDKGVISVSEDIFALKPQQ 30
          M  + + +  G++ G +++++ IF ++P +
Sbjct: 1  MANVKLFDQTGKEAGEVTLNDAIFGIEPNE 30


>gi|310794400|gb|EFQ29861.1| ribosomal protein L4/L1 family protein [Glomerella graminicola
          M1.001]
          Length = 387

 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSE 56
            +++   DG+  G       +F    +  I+  V +  +  KR        +  +  +E
Sbjct: 5  PTVTIIGKDGKSSGNTHTLPAVFLSPIRPDIVQEVHKGMAKNKRQPYSVSEKAGHQTSAE 64

Query: 57 VAYTG 61
             TG
Sbjct: 65 SWGTG 69



 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 12/165 (7%)

Query: 49  SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL 108
           + +K   +     ++   +  T  A  +S      +  G     VP + +        + 
Sbjct: 138 APTKTWRKWHVKVNQGQKRYATVSAIAASGVAPLLQARGHQISNVPEVPLVVDSALFENA 197

Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVT------RFRALDLSNALIIDGCQLD-R 161
           A+    +       +   D+ V K  K+K L          R       L+I   ++D +
Sbjct: 198 AVARTAAAVSLLKTVGAADD-VEKVKKSKKLRAGKGKLRGRRFRQRRGPLVIYDPEVDGK 256

Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEAL 202
               A RN+P +   PV  +N+  +         +V + +A ++L
Sbjct: 257 ELVTAFRNVPGVETSPVTSLNLLQLAPGGHLGRFVVWTSAAFKSL 301


>gi|51105596|gb|AAT97270.1| ribosomal protein subunit 1 [Culicoides sonorensis]
          Length = 82

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 6/72 (8%)

Query: 4  LSVRNLDGEDKGVIS-VSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRSEV 57
          +SV     E     +     IF    +  ++  V +     +R        +  +  +E 
Sbjct: 10 VSVYTEKNEVNKEATSALPAIFKAPIRPDVVNEVCQLMRRNRRQPYAVSEAAGHQTSAES 69

Query: 58 AYTGSKMYVQKG 69
            TG  +     
Sbjct: 70 WGTGRAVARIPR 81


>gi|329765068|ref|ZP_08256652.1| Ribosomal protein L4 [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138445|gb|EGG42697.1| Ribosomal protein L4 [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 117

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKR--IGCSKSKGRSEVAY 59
          ++ +   + G   G + +   IF+   +  ++ +     +  K    G   + G   VA 
Sbjct: 1  MKTTAFTITGTKDGEVELPL-IFSTPFRPELIHKAFTNLTSHKFQPQGRHPTAGMDVVAR 59

Query: 60 TGSKMYVQKGTGRARH 75
          +      Q     A+ 
Sbjct: 60 SNDPPTGQHQARIAKM 75


>gi|222064025|emb|CAQ86675.1| putative ribosomal protein conserved domain L4/L1 family
           [Histomonas meleagridis]
          Length = 275

 Score = 48.1 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
             D     A RNIP + +  V  +++Y +    K    ++ ++SA +AL++ +
Sbjct: 65  NKDEGVVKAFRNIPGVEIQSVHRLSIYQLAPAGKMGRLVIWTESAFKALDEIY 117


>gi|198425705|ref|XP_002123535.1| PREDICTED: similar to ribosomal protein L4 [Ciona intestinalis]
          Length = 309

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 48/201 (23%)

Query: 50  KSKGRSEVAY--TGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKV 105
           K+  R E             +G G  R    +      GG+ + P               
Sbjct: 9   KTGKRGEKRGKEGKEGKRENRGGGTHRSGQAAFGNMCRGGRMYAPTKTWRRWHRRCNINQ 68

Query: 106 RSLALRH----------ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNA 151
           R  A+             +S     +      +V+++ V +  KTK  V   + L   + 
Sbjct: 69  RRFAVCSALAASSLPALVMSKGHKIDQTPEIPLVVEDKVQQFKKTKDAVVLLKKLKAWDD 128

Query: 152 LIIDGC--------------------------QLDRNFQLAARNIPNINLLPVQGINVYD 185
           +                                 D     A RNIP I L+ V  +N+  
Sbjct: 129 IKKVMKSRKIRAGKGKMRNRRHTMKRGPCIIYDKDEGISKAFRNIPGITLISVDRLNLLK 188

Query: 186 ILRCSKL----VLSKSAIEAL 202
           I     +    + ++SA++ L
Sbjct: 189 IAPGGHVGRFLIWTQSALKRL 209


>gi|22758862|gb|AAN05590.1| ribosomal protein L4 [Argopecten irradians]
          Length = 269

 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 46/177 (25%)

Query: 77  SKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI- 123
             +      GG+ F P          +    R  AL             +S      +  
Sbjct: 11  RGAFGNMCRGGRMFAPTKTWRRWHRRININQRRYALCSAIAATGIPALVMSKGHRIEETQ 70

Query: 124 ---MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC----------------------- 157
              +V+ + V +  KTK  V+  + L   + +                            
Sbjct: 71  EVPLVVSDKVQEFKKTKEAVSLLKTLKAWSDIQKVYNSKRFRAGKGKMRNRRRIMRRGPL 130

Query: 158 ---QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRFK 207
              + D     A RNIP I L+ V  +N+  I     +    + ++SA   L+D +K
Sbjct: 131 VIYREDNGISRAFRNIPGITLINVSRLNLLKIAPGGHVGRFCIWTESAFRQLDDLYK 187


>gi|198273719|ref|ZP_03206254.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
 gi|198249747|gb|EDY74528.1| 50S ribosomal protein L4 [Ureaplasma urealyticum serovar 4 str.
           ATCC 27816]
          Length = 117

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 2/107 (1%)

Query: 95  IIGVHALPKKVRSLALRHALSDKFCSNDIM-VIDNLVSKECKTKYLVTRFRALD-LSNAL 152
                 +  KVR LA + AL+ K     ++ ++ N   +   TK +V      +  +  +
Sbjct: 2   RNYNLKVNAKVRLLAFKSALTIKLNEGKMLGLVANSDLETPSTKKMVNFINNANLENQKV 61

Query: 153 IIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKLVLSKSAI 199
           ++       N + +  N+  +       ++V D++  + +V+++ A 
Sbjct: 62  LLVIADHFSNIKKSTNNLQKVTTKLWYQVSVRDLMHANVVVVAEEAF 108


>gi|269986341|gb|EEZ92642.1| ribosomal protein L4/L1e [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 237

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 36/175 (20%)

Query: 4   LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRK------------------- 44
           + V ++DG++ G I + E +F        L +    +   +                   
Sbjct: 2   VKVFSIDGKESGSIELPE-VFNTPVNYQTLKKAFLAEDSERFQLKYTDPMAGKRKVARLT 60

Query: 45  -RIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA-LP 102
            R    K+     +  T  K   + GT              GG +A  P     +   + 
Sbjct: 61  KRRRSYKTSYGRGLDRTPRKTLSKVGTNFYYVG-PVAPNTVGGREAHPPQAEKRLVKGIN 119

Query: 103 KKVRSLALRHALSDKFCSNDI-------------MVIDNLVSKECKTKYLVTRFR 144
           KK + +A++  ++      ++             +VID  +    KTK  +    
Sbjct: 120 KKEKRMAIKMGIAASANIKEVSKFHNLGGLKELPIVIDGNLETLKKTKDAIKLLS 174


>gi|31442365|ref|NP_852622.1| ribosomal protein L4 [Eimeria tenella strain Penn State]
 gi|31322457|gb|AAO40223.1| ribosomal protein L4 [Eimeria tenella]
          Length = 213

 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 2/152 (1%)

Query: 43  RKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALP 102
             +I  S +  ++ ++ +  K + QKG G AR  S     ++GG K FGP   I      
Sbjct: 62  YHKIKKSNTINKNNLSKSTKKPWKQKGLGMARSGSFKSPLWKGGIKLFGPKNRIINIIFQ 121

Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162
            K + L   + L +K         +         K  + + + +    +  I    L+ N
Sbjct: 122 IKKKKLNFFYLLLNKRTYISFTSYNAYNIYFNNFKEYLNKQKRIKGIFSNKIIYILLNNN 181

Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKLVL 194
             +   N P   +L ++ +N+   L+ + ++ 
Sbjct: 182 INIKKTNYPF--ILSIKSLNIISFLKFNYIIF 211


>gi|3914703|sp|O15594|RL4_ENTHI RecName: Full=60S ribosomal protein L4; AltName: Full=L1
          Length = 245

 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 62/214 (28%), Gaps = 59/214 (27%)

Query: 48  CSKSKGRSEVAYTG----SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHAL 101
               K  S +++      +++    G+G  R+   +       G  F P+          
Sbjct: 2   TKAGKQHSAISWGTGRAVARIPRISGSGSGRNGQGAFGNMTRKGHMFSPLKNFRKWQRKT 61

Query: 102 PKKVRSLALRHALSDKFCSNDIMVIDNLVSKEC----------------------KTKYL 139
           PK++R  A+   ++       +    + ++                         KTK  
Sbjct: 62  PKQMRRFAVASCIAASAVPALVSARGHHIAGVPQLPSVSFLQPQFHSSKSISVIKKTKQA 121

Query: 140 VTRFRALDLS---------------------------NALIIDGCQLDRNFQLAARNIPN 172
           V   + ++                                ++     D     A RNIP 
Sbjct: 122 VYLLKKINAYSDVLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPG 181

Query: 173 INLLPVQGINVYDILR----CSKLVLSKSAIEAL 202
           ++   V+ ++V ++         ++  +SA + L
Sbjct: 182 VDTCRVENLSVLNLAPGCHMGRFIIWPESAFKKL 215


>gi|226532572|ref|NP_001144599.1| hypothetical protein LOC100277614 [Zea mays]
 gi|195644392|gb|ACG41664.1| hypothetical protein [Zea mays]
          Length = 165

 Score = 45.4 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 9/74 (12%)

Query: 4  LSVRNLDGEDKGV---ISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----SKSKGRS 55
          +SV+ L+G+       I++   +F    +  ++    +  S  KR        +  +  +
Sbjct: 9  VSVKALEGDMVTDAPGIALPP-VFGAPIRPDVVRFTHKLLSCNKRQPYAVSRRAGHQTSA 67

Query: 56 EVAYTGSKMYVQKG 69
          E   TG  +     
Sbjct: 68 ESWGTGRAVSRIPR 81


>gi|269866082|ref|XP_002652149.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220063065|gb|EED41907.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 288

 Score = 45.4 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 52/215 (24%)

Query: 41  SWRKRIGCS-----KSKGRSEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGP 92
           +   R   +       +  +E   TG  +      KG+G  R    + + F   G+   P
Sbjct: 10  NQNSRQPYAVSPNAGMQHSAESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHP 69

Query: 93  VPIIGVH---------ALPKKVRSLALRHALSDKFCSNDI-------MVIDNLVSKECKT 136
                            L   +   A  HA   +   + I       +V+ + +S   KT
Sbjct: 70  TKTHRRWHKKTPLNTRRLVTAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKT 129

Query: 137 KYLVTRFRALDLSNALIIDGCQL------------------------DRNFQLAARNIPN 172
           +      + ++L   L                               D     A  NI  
Sbjct: 130 QEAYQMLQNMNLEQDLKKVRESKTITCGKGKFRGRRYSKRTGLLIVHDNAALSAFSNIEG 189

Query: 173 INLLPVQGINVYDILRCSKL----VLSKSAIEALE 203
           + L  V  +N+  +     L    + ++SA + LE
Sbjct: 190 VELANVNSLNLLRLCPGGHLGRLILWTESAFKKLE 224


>gi|313240950|emb|CBY33256.1| unnamed protein product [Oikopleura dioica]
          Length = 257

 Score = 45.4 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 6/160 (3%)

Query: 52  KGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALR 111
           K         +    +  T  A  ++   S     G     VP   +            +
Sbjct: 12  KTWRNWHRRVNVTQRRYATVSAIAATGIPSLAMAKGHVVNNVPEFPLVIDSSAEALKKTK 71

Query: 112 HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALI-IDGCQLDRNFQLAARNI 170
            A+S       I    N V +  + +    + R          +   + D     A RNI
Sbjct: 72  AAVSVLKKVGAID-DVNRVKETRRFRAGRGKMRNRRRVQKRGPLVVYKNDDGIVQAMRNI 130

Query: 171 PNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
           P + LLPV  +N+  +     +    + +  A +AL++ +
Sbjct: 131 PGVTLLPVDQLNLLKLAPGGHVGRFTIYTSEAFKALDNVY 170


>gi|291333645|gb|ADD93336.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S11-C441]
          Length = 66

 Score = 44.3 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALE 203
               ARN+P ++++  + ++  D+     +    V +KSA+EALE
Sbjct: 22  LDKGARNLPGVDVVTAKDLSAEDLAPGGDMGRLTVWTKSAVEALE 66


>gi|308812566|ref|XP_003083590.1| Ribosomal protein RPL1/RPL2/RL4L4 (ISS) [Ostreococcus tauri]
 gi|116055471|emb|CAL58139.1| Ribosomal protein RPL1/RPL2/RL4L4 (ISS) [Ostreococcus tauri]
          Length = 404

 Score = 43.5 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 69/265 (26%), Gaps = 71/265 (26%)

Query: 2   IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC-----------SK 50
             ++V+N +G    +     ++F    +  I+  V    +                  S+
Sbjct: 6   PTVTVQNGNGASCAM----PEVFLSPIRADIVNAVHTGLAKND--STTDEIQLCFLLDSQ 59

Query: 51  SKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--------IIGVHALP 102
            K         +K     G   AR     V +                          + 
Sbjct: 60  GKRTPCTDVPATKPRPSPGAPVARSLVFRVCRAVVPTAPVKGRSVTCAAVTWRRWHRRVN 119

Query: 103 KKVRSLALRHALSD-------KFCSNDI-------MVIDNLVSKECKTKYLVTRFRA--- 145
            K +  A+  A++            + +       +V+D+  S   KT   V   +    
Sbjct: 120 IKEKRYAVCSAIAASAVPSLLLARGHRVEGVPEVPLVVDDSASSIKKTAKAVELLKQLGA 179

Query: 146 ------------------------LDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGI 181
                                          ++   + D     A RNIP + L  V  +
Sbjct: 180 YADIEKVKASRNVRSGKGKMRNRRYVQRRGPLVVYSE-DNGVTRAFRNIPGVELCSVDRL 238

Query: 182 NVYDILRCSKL----VLSKSAIEAL 202
            +  +     +    + +KSA E L
Sbjct: 239 GLLTLAPGGHVGRFIIWTKSAFEKL 263


>gi|67619485|ref|XP_667650.1| 60S ribosomal protein-like [Cryptosporidium hominis TU502]
 gi|54658805|gb|EAL37421.1| 60S ribosomal protein-like [Cryptosporidium hominis]
          Length = 212

 Score = 43.1 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 10/54 (18%)

Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILR------CSKL-VLSKSAIEALEDRF 206
           D     A RNI  ++   V+ +N   +LR        +L + +K AI+ L++ +
Sbjct: 35  DNGIVKAMRNIKGVDTCSVERLN---LLRLAPGGTFGRLTIFTKGAIKRLQEIY 85


>gi|291333647|gb|ADD93338.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S11-C441]
          Length = 97

 Score = 42.8 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 6/71 (8%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 7  RNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC----SKSKGRSEVAYTGS 62
           +++ +D   + + +  F  + ++ ++   +      +R          K   +     S
Sbjct: 26 YSVEAKDGKAVQLPDA-FTSQIREDLVRSAVLASRANRRQSYGHRAHSGKRSPQPGMKHS 84

Query: 63 KMYVQKGTGRA 73
            +  +G    
Sbjct: 85 VEWWARGEESP 95


>gi|56462224|gb|AAV91395.1| ribosomal protein 23 [Lonomia obliqua]
          Length = 274

 Score = 42.8 bits (99), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 104 KVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNF 163
                A+      K  S+ + V  +   +  K K          L     +     D+  
Sbjct: 27  NKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGK----MRNRRRLHRKGPLIIYNKDQGL 82

Query: 164 QLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
             + RNIP ++++ V  +N+  +     +    + ++SA E L+  F
Sbjct: 83  TRSFRNIPGVDMVNVNKLNLLHLAPGGHVGRFMIWTQSAFERLDAIF 129


>gi|321437441|gb|ADW83731.1| ribosomal protein L4 [Musa acuminata AAA Group]
          Length = 301

 Score = 42.4 bits (98), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKS 197
           R R        +I           A RNIP +++  V+ +N+  +         ++ +KS
Sbjct: 97  RNRRYISRKGPLIVYGTEGSKIVKAFRNIPGVDVANVERLNLLKLASGGHIGRFIIWTKS 156

Query: 198 AIEALEDRF 206
           A E L+  F
Sbjct: 157 AFEKLDSVF 165


>gi|289919138|gb|ADD21621.1| ribosomal protein L4 [Mya truncata]
          Length = 172

 Score = 42.4 bits (98), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 47/163 (28%), Gaps = 42/163 (25%)

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRH------- 112
           +++   +G G  R    +      GG+ F P          +    R  A+         
Sbjct: 6   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHRRININQRRYAICSALAASAI 65

Query: 113 ---ALSDKFCSNDI----MVIDNLVSKECKTKYLVTRFRALDLSNALIIDGC-------- 157
               +S      +I    +V+ + V +  +TK  V   + L     ++            
Sbjct: 66  PSLVMSKGHMIEEIPEVPLVVSDKVEEYKRTKEAVQLLKKLKAWRDILKVYNSKRFRAGK 125

Query: 158 ------------------QLDRNFQLAARNIPNINLLPVQGIN 182
                               D     A RNIP I LL V  +N
Sbjct: 126 GKMRNRRRIQRRGPLIIYNQDNGLTRAFRNIPGITLLNVARLN 168


>gi|119598179|gb|EAW77773.1| ribosomal protein L4, isoform CRA_a [Homo sapiens]
 gi|119598181|gb|EAW77775.1| ribosomal protein L4, isoform CRA_a [Homo sapiens]
          Length = 333

 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 51/170 (30%), Gaps = 46/170 (27%)

Query: 83  FRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVI 126
              GG+ F P          +    +  A+             +S      ++    +V+
Sbjct: 1   MCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVV 60

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGC--------------------------QLD 160
           ++ V    KTK  V   + L   N +                                 D
Sbjct: 61  EDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 120

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
                A RNIP I LL V  +N+  +     +    + ++SA   L++ +
Sbjct: 121 NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 170


>gi|78557859|gb|ABB46357.1| ribosomal protein L4 [Ovis aries]
          Length = 193

 Score = 42.0 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162
            K    A+      K  ++   V  +   +  K K    R         +       D  
Sbjct: 24  YKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY----NEDNG 79

Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
              A RNIP I LL V  +N+  +     +    + ++SA   L++ +
Sbjct: 80  IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 127


>gi|194387076|dbj|BAG59904.1| unnamed protein product [Homo sapiens]
          Length = 239

 Score = 42.0 bits (97), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162
            K    A+      K  ++   V  +   +  K K    R         +       D  
Sbjct: 50  YKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY----NEDNG 105

Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
              A RNIP I LL V  +N+  +     +    + ++SA   L++ +
Sbjct: 106 IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 153


>gi|112980817|gb|ABI29190.1| ribosomal protein L4 [Sus scrofa]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 102 PKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDR 161
             K    A+      K  ++   V  +   +  K K    R         +       D 
Sbjct: 13  SYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIY----NEDN 68

Query: 162 NFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
               A RNIP I LL V  +N+  +     +    + ++SA   L++ +
Sbjct: 69  GIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 117


>gi|29841119|gb|AAP06132.1| hypothetical protein [Schistosoma japonicum]
          Length = 135

 Score = 41.6 bits (96), Expect = 0.065,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 14  KGVISVSEDIFALKPQQGILARVLRWQSWRK 44
            G++ +  DIFA+ P+  ++ + L WQ+  +
Sbjct: 96  VGMVDLHPDIFAVFPRIDLVHKNLYWQAHYR 126


>gi|149041948|gb|EDL95789.1| rCG58071, isoform CRA_b [Rattus norvegicus]
          Length = 233

 Score = 41.2 bits (95), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
             D     A RNIP I LL V  +N+  +     +    + ++SA   L++ +
Sbjct: 24  NEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 76


>gi|74000592|ref|XP_866357.1| PREDICTED: similar to ribosomal protein L4 isoform 2 [Canis
           familiaris]
 gi|74000594|ref|XP_866372.1| PREDICTED: similar to ribosomal protein L4 isoform 3 [Canis
           familiaris]
 gi|74000596|ref|XP_866386.1| PREDICTED: similar to ribosomal protein L4 isoform 4 [Canis
           familiaris]
 gi|74000598|ref|XP_866397.1| PREDICTED: similar to ribosomal protein L4 isoform 5 [Canis
           familiaris]
 gi|74000600|ref|XP_866407.1| PREDICTED: similar to ribosomal protein L4 isoform 6 [Canis
           familiaris]
 gi|74004015|ref|XP_859635.1| PREDICTED: similar to ribosomal protein L4 isoform 3 [Canis
           familiaris]
          Length = 328

 Score = 40.8 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 46/170 (27%)

Query: 83  FRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVI 126
              GG+ F P          +    +  A+             +S      ++    +V+
Sbjct: 1   MCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVV 60

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGC--------------------------QLD 160
           ++ V    KTK  V   + L   N +                                 D
Sbjct: 61  EDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 120

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
                A RNIP I LL V  +N+  +     +    + ++SA   L+D +
Sbjct: 121 NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLY 170


>gi|26376612|dbj|BAB28234.2| unnamed protein product [Mus musculus]
          Length = 325

 Score = 40.8 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 50/170 (29%), Gaps = 46/170 (27%)

Query: 83  FRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVI 126
              GG+ F P          +    +  A+             +S      ++    +V+
Sbjct: 1   MCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVV 60

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGC--------------------------QLD 160
           ++ V    KTK  V   + L   N +                                 D
Sbjct: 61  EDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 120

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
                  RNIP I LL V  +N+  +     +    + ++SA   L++ +
Sbjct: 121 NGIIKGFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELY 170


>gi|289919140|gb|ADD21622.1| ribosomal protein L4 [Micromenia fodiens]
          Length = 172

 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 52/169 (30%), Gaps = 45/169 (26%)

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALS---- 115
           +++   +G G  R    +      GG+ FGP          +    R  AL  A++    
Sbjct: 6   ARIPRVRGGGTHRSGQGAFGNMCRGGRMFGPTRIWRRWHRKINLNQRRYALCSAIAASGV 65

Query: 116 ---DKFCSNDI-------MVIDNLVSKECKTKYLVTRFRALDLS---------------- 149
                   + I       MV+++ V    KTK  V   R++                   
Sbjct: 66  PALVMAKGHQISELPEVPMVVNDGVQNYKKTKEAVKFLRSIKAWSDVEKVYRTKRFRAGK 125

Query: 150 ----------NALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR 188
                         +     D     A RNIP I +L V  +N   +L+
Sbjct: 126 GKMRNRRRIMKRGPVIVYNKDNGLTRAFRNIPGITMLNVSKLN---LLK 171


>gi|322500763|emb|CBZ35840.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 89

 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 7/72 (9%)

Query: 4  LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
          +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 7  VSVYSASSDSVVGTCPLP-AVFTAPIRNDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65

Query: 58 AYTGSKMYVQKG 69
            TG  +     
Sbjct: 66 WGTGRAVARIPR 77


>gi|38047527|gb|AAR09666.1| similar to Drosophila melanogaster RpL1 [Drosophila yakuba]
          Length = 236

 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
             D   + A RNIP I  + V  +N+  +         ++ ++SA   L D F
Sbjct: 50  DKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLF 102


>gi|322500765|emb|CBZ35842.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 94

 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 7/72 (9%)

Query: 4  LSVRNLDG-EDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEV----- 57
          +SV +       G   +   +F    +  I+  V    +   R   + ++          
Sbjct: 7  VSVYSASSDSVVGTCPLP-AVFTAPIRNDIVKFVHTNMAKNSRQAYAVNRLSGMNHSAHS 65

Query: 58 AYTGSKMYVQKG 69
            TG  +     
Sbjct: 66 WGTGRAVARIPR 77


>gi|70909607|emb|CAJ17271.1| ribosomal protein L4e [Micromalthus debilis]
          Length = 241

 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 106 RSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQL 165
              A+      K  S    V ++   +  K K          ++    +     D+  + 
Sbjct: 26  TKQAVHFLRRIKVWSEIEKVYNSRRFRAGKGK----MRNRRRINRKGPLIVYHQDQGLRR 81

Query: 166 AARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
           A RNIP I+L+ V  +N+  I     +    + ++SA   L+  F
Sbjct: 82  AFRNIPGIDLMNVNRLNLLKIAPGGHVGRFIIWTQSAFAYLDKLF 126


>gi|296085650|emb|CBI29449.3| unnamed protein product [Vitis vinifera]
          Length = 398

 Score = 40.8 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKS 197
           R R        +I           A RNIP + +  V  +N+  +         ++ +KS
Sbjct: 70  RNRRYISRKGPLIVYGMEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKS 129

Query: 198 AIEALEDRFK 207
           + E L+  ++
Sbjct: 130 SFEKLDSIYR 139


>gi|13605831|gb|AAK32901.1|AF367314_1 AT5g02870/F9G14_180 [Arabidopsis thaliana]
 gi|22137186|gb|AAM91438.1| AT5g02870/F9G14_180 [Arabidopsis thaliana]
 gi|110740340|dbj|BAF02065.1| 60S ribosomal protein - like [Arabidopsis thaliana]
          Length = 307

 Score = 40.4 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKS 197
           R R        ++           A RN+P + L  V+ +N+  +         ++ +KS
Sbjct: 103 RNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKS 162

Query: 198 AIEALEDRF 206
           A E LE  +
Sbjct: 163 AFEKLESIY 171


>gi|73993912|ref|XP_860813.1| PREDICTED: similar to ribosomal protein L4 isoform 3 [Canis
           familiaris]
          Length = 328

 Score = 40.4 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 46/170 (27%)

Query: 83  FRGGGKAFGPVP--IIGVHALPKKVRSLALRH----------ALSDKFCSNDI----MVI 126
              GG+ F P          +    +  A+             +S      ++    +V+
Sbjct: 1   MCRGGRMFAPTKTWCRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVV 60

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGC--------------------------QLD 160
           ++ V    KTK  V   + L   N +                                 D
Sbjct: 61  EDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 120

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
                A RNIP I LL V  +N+  +     +    + ++SA   L+D +
Sbjct: 121 NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLY 170


>gi|195359668|ref|XP_002045412.1| GM24605 [Drosophila sechellia]
 gi|194122035|gb|EDW44078.1| GM24605 [Drosophila sechellia]
          Length = 216

 Score = 40.1 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
             D   + A RNIP I  + V  +N+  +         ++ ++SA   L D F
Sbjct: 30  DKDEGLRQAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIWTESAFARLNDLF 82


>gi|264667431|gb|ACY71301.1| ribosomal protein L4 [Chrysomela tremulae]
          Length = 207

 Score = 40.1 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALEDRF 206
             D+  + A RNIP I+L+ V  +N+  +         ++ ++SA   L+  F
Sbjct: 16  HKDQGLRRAFRNIPGIDLVGVDKLNLLKLAPGGHVGRFVIWTESAFARLDKLF 68


>gi|297825465|ref|XP_002880615.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297326454|gb|EFH56874.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 190

 Score = 40.1 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 10/72 (13%)

Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILR-------CSKLVL 194
           R R        +I           A RNIP I+L  V+    + +L+          +V 
Sbjct: 2   RNRRYVSPKGPLIVYGNEGAKLVKAFRNIPGIDLCHVEK---FSLLKLAPGGHLGRFVVW 58

Query: 195 SKSAIEALEDRF 206
           +KSA E LE  +
Sbjct: 59  TKSAFEKLESVY 70


>gi|294930021|ref|XP_002779465.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
 gi|239888585|gb|EER11260.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
          Length = 230

 Score = 40.1 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKS 197
           R R   +    ++   + D     A RNIP I L  V  +N+  +         ++ ++ 
Sbjct: 57  RNRRYVMRRGPLVVYAE-DDGLTKAFRNIPGIELCQVDRLNLLQVAPGGTFGRFIIWTQP 115

Query: 198 AIEALEDRF 206
           A + L+  F
Sbjct: 116 AFDRLQQLF 124


>gi|294878601|ref|XP_002768418.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
 gi|239870846|gb|EER01136.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
          Length = 271

 Score = 40.1 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 142 RFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKS 197
           R R   +    ++   + D     A RNIP I L  V  +N+  +         ++ ++ 
Sbjct: 74  RNRRYVMRRGPLVVYAE-DDGLTKAFRNIPGIELCQVDRLNLLQVAPGGTFGRFIIWTQP 132

Query: 198 AIEALEDRF 206
           A + L+  F
Sbjct: 133 AFDRLQQLF 141


>gi|242068965|ref|XP_002449759.1| hypothetical protein SORBIDRAFT_05g022750 [Sorghum bicolor]
 gi|241935602|gb|EES08747.1| hypothetical protein SORBIDRAFT_05g022750 [Sorghum bicolor]
          Length = 64

 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 29/96 (30%), Gaps = 36/96 (37%)

Query: 19  VSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSK 78
           + +D+F +  ++ I+  V          G   +K   E                      
Sbjct: 3   LDDDVFDVPIRKDIVHWV----------GTHLTKAIGEFHGG------------------ 34

Query: 79  SVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHAL 114
                       GP P I    L KKVR L L+ AL
Sbjct: 35  --------ATIHGPKPRIHAIKLQKKVRRLGLKIAL 62


>gi|291406673|ref|XP_002719613.1| PREDICTED: ribosomal protein L4-like [Oryctolagus cuniculus]
          Length = 292

 Score = 39.3 bits (90), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 141 TRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSK 196
                  +           D     A RNIP I LL V  +N+  +     +    + ++
Sbjct: 62  KMRNRQRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKLAPGGHVGRFCIWTE 121

Query: 197 SAIEALEDRF 206
           SA   L+D +
Sbjct: 122 SAFRKLDDLY 131


>gi|149420611|ref|XP_001521591.1| PREDICTED: similar to ribosomal protein L4, partial
           [Ornithorhynchus anatinus]
          Length = 95

 Score = 39.3 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
             D     A RNIP I LL V  +N+  +     +    + ++SA   L+D +
Sbjct: 30  NEDNGIIKAFRNIPGITLLNVTKLNLLRLAPGGHVGRFCIWTESAFRKLDDLY 82


>gi|322821568|gb|EFZ27855.1| 60S ribosomal protein L4, putative [Trypanosoma cruzi]
          Length = 128

 Score = 39.3 bits (90), Expect = 0.34,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 4   LSVRNL-DGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRI 46
           +SV +  + +  G   +   +F    +  I+  V    +   R 
Sbjct: 85  VSVYSASEDKVVGTCPLP-AVFTAPIRHDIVQFVHTNMAKNSRQ 127


>gi|226858987|gb|ACO87994.1| P450 [Nilaparvata lugens]
          Length = 497

 Score = 38.9 bits (89), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +N Y +L+   LVL+ SA+E +E +
Sbjct: 451 LNKYSMLKHEALVLTVSAVEEIEKK 475


>gi|233770157|gb|ACQ91145.1| cytochrome P450 [Nilaparvata lugens]
          Length = 508

 Score = 38.9 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 181 INVYDILRCSKLVLSKSAIEALEDR 205
           +N Y +L+   LVL+ SA+E +E +
Sbjct: 450 LNKYSMLKHEALVLTVSAVEEIEKK 474


>gi|330902740|gb|EGH33753.1| 50S ribosomal protein L4 [Pseudomonas syringae pv. japonica str.
          M301072PT]
          Length = 55

 Score = 38.9 bits (89), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 2  IELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSW-RKRIGCSK 50
          ++L+V +        I VSE  F  +  + ++ + +       +R+  SK
Sbjct: 1  MQLNVNDAQA-----IEVSELTFGGEFNETLVHQAVVAYMAGGRRVASSK 45


>gi|294881799|ref|XP_002769500.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
 gi|239872965|gb|EER02218.1| 60S ribosomal subunit protein L4, putative [Perkinsus marinus ATCC
           50983]
          Length = 192

 Score = 38.9 bits (89), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 148 LSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAIEALE 203
           +    ++   + D     A RNIP I L  V  +N+  +         ++ ++ A + L+
Sbjct: 1   MRRGPLVVYAE-DDGLTKAFRNIPGIELCQVDRLNLLQVAPGGTFGRFIIWTQPAFDRLQ 59

Query: 204 DRF 206
             F
Sbjct: 60  QLF 62


>gi|269863508|ref|XP_002651248.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220064880|gb|EED42809.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 251

 Score = 38.5 bits (88), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 4/169 (2%)

Query: 39  WQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGV 98
             +   R G      ++   +        +    A   + S        +      +  +
Sbjct: 19  AFANFARKGRMAHPTKTHRRWHKKTPLNTRRLVTAMGVAASGHADIVEARGHRITGVASL 78

Query: 99  HALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQ 158
             +     S   +   + +   N  +  D    +E KT             +        
Sbjct: 79  PLVVSDTISDIRKTQEAYQMLQNMNLEQDLKKVRESKTITCGKGKFRGRRYSKRTGLLIV 138

Query: 159 LDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALE 203
            D     A  NI  + L  V  +N+  +     L    + ++SA + LE
Sbjct: 139 HDNAALSAFSNIEGVELANVNSLNLLRLCPGGHLGRLILWTESAFKKLE 187


>gi|322815151|gb|EFZ23874.1| hypothetical protein TCSYLVIO_10011 [Trypanosoma cruzi]
          Length = 137

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALED 204
           +P+   N +D ++  +LV+++ AI  LE+
Sbjct: 11  IPINRFNAFDAMQHERLVITEGAIMQLEE 39


>gi|302656450|ref|XP_003019978.1| hypothetical protein TRV_05947 [Trichophyton verrucosum HKI 0517]
 gi|291183756|gb|EFE39354.1| hypothetical protein TRV_05947 [Trichophyton verrucosum HKI 0517]
          Length = 314

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 53/197 (26%), Gaps = 52/197 (26%)

Query: 62  SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP--IIGVHALPKKVRSLALRHALSDKFC 119
           +++    G G  R    +       G+ F P          +    R  A   AL+    
Sbjct: 14  ARIPRVSGGGTHRAGQAAFGNMCRSGRMFAPTKVWRKWHQKVNVGQRRFATASALAASSV 73

Query: 120 SNDIMVIDNLVSKEC-----------------KTKYLVTRFR------------------ 144
              +    + V                     KTK  V   +                  
Sbjct: 74  PALLFARGHRVENVPEVPLVVDSKCFQGDALTKTKAAVALLQAVGAGADLVKVKESRKVR 133

Query: 145 ----------ALDLSNALIIDGCQLD-RNFQLAARNIPNINLLPVQGINVYDILRCSKL- 192
                            L+I   ++D +    A RNIP +    V  +N+  +     L 
Sbjct: 134 AGKGKLRGRRYRQRRGPLVIYNPEVDGKELVRAFRNIPGVETSSVFSLNLLQLAPGGHLG 193

Query: 193 ---VLSKSAIEALEDRF 206
              V S +A  AL++ +
Sbjct: 194 RFIVWSSAAFSALDEIY 210


>gi|2350919|dbj|BAA21989.1| ribosomal protein L1 [Entamoeba histolytica]
          Length = 137

 Score = 38.5 bits (88), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           V+  + SK  +      R R +      ++     D     A RNIP ++   V+ ++V 
Sbjct: 26  VLKVIASKTIRAGQGKMRGRKIKERKGPLVVYGNDDLQAVKAFRNIPGVDTCRVENLSVL 85

Query: 185 DILR----CSKLVLSKSAIEAL 202
           ++         ++  +SA + L
Sbjct: 86  NLAPGCHMGRFIIWPESAFKKL 107


>gi|256251616|emb|CAR63711.1| putative Ribosomal Protein [Angiostrongylus cantonensis]
          Length = 179

 Score = 38.5 bits (88), Expect = 0.57,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 160 DRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
           D     A RNIP +++L V+ +N+  +     L    + ++SA + L+  +
Sbjct: 47  DAECAQAFRNIPGVDILNVERLNLLKVAPGGHLGRLIIWTESAFKKLDAIY 97


>gi|73946102|ref|XP_854568.1| PREDICTED: similar to ribosomal protein L4 [Canis familiaris]
          Length = 313

 Score = 38.5 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 46/170 (27%), Gaps = 46/170 (27%)

Query: 83  FRGGGKAFGPVPIIGVHALPKKVRSLALRHA------------LSDKFCSNDI----MVI 126
              GG+ F P                                 +S      ++    +V+
Sbjct: 1   MCRGGRMFAPTKTWRRWHRRVNTTQKRCTICSALAASASPALVMSKGHRIEEVPELPLVV 60

Query: 127 DNLVSKECKTKYLVTRFRALDLSNALIIDGCQL--------------------------D 160
           ++ V    KTK  V   + L   N +                                 D
Sbjct: 61  EDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRRRAGKGKMRNRRRIQRRGPCIIYSED 120

Query: 161 RNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
                A RNIP I LL V  +NV  +     +      ++SA   L+D +
Sbjct: 121 NGIIKAFRNIPGITLLNVSRLNVLKLAPGGHVGRFCFWTESAFLKLDDLY 170


>gi|316974003|gb|EFV57544.1| eukaryotic translation initiation factor 1A [Trichinella spiralis]
          Length = 234

 Score = 38.5 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 176 LPVQGINVYDILRCSKLVLSKSAIEALEDR 205
           + ++G+N + +L+   LVLSK A+  L+ R
Sbjct: 26  IWIRGLNCFSMLKHETLVLSKDALIYLQKR 55


>gi|221123847|ref|XP_002155853.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 261

 Score = 38.5 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 125 VIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVY 184
           V     SK+ +      R R   +    ++   + D   + A RN+P ++L+ V  +N+ 
Sbjct: 65  VQKCQDSKKIRAGKGKMRNRRYTMRRGPLVVFKE-DHGIKQAFRNLPGVDLIQVDRLNLL 123

Query: 185 DILRCSK----LVLSKSAIEAL 202
            +         ++ S+SA E L
Sbjct: 124 KLCPGGHLGRFVIWSESAFERL 145


>gi|315115489|gb|ADT80717.1| ribosomal protein L4 [Euphydryas aurinia]
          Length = 308

 Score = 38.1 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
             D+    A RNIP + +L V  +N+  +     L    + ++SA E L+  F
Sbjct: 104 HKDQGLTKAFRNIPGVEMLSVNKLNLLKLAPGGHLGRFIIWTQSAFERLDALF 156


>gi|68063241|ref|XP_673630.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491622|emb|CAH97811.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 442

 Score = 38.1 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 52/167 (31%), Gaps = 14/167 (8%)

Query: 49  SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSL 108
            K K     +        QKG   + +++ + + +                 L ++ ++ 
Sbjct: 203 HKLKRMPNSSNIKKVPSFQKGISGSAYNTMNNNAYNFSKT----DNSSFFGGLNRQKQNN 258

Query: 109 ALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAAR 168
              +   DK  ++   V     ++   ++          + +     G  +      A  
Sbjct: 259 NEGYNKYDKNKTHHWSVNSYNNNEYPSSEANNEYIHPDYICHMCGKKGHSIKNCTMSAFN 318

Query: 169 NIPNINL---LPVQGI---NVYDILRCSKLVLSKSA----IEALEDR 205
           N   I +   +P   +   N  DI +  ++ + K      ++ +E+ 
Sbjct: 319 NNKKIKVPTGIPANFLTKINAEDIYKYDQIYILKDGSYGILKNVEEV 365


>gi|116488060|gb|ABJ98612.1| 60S ribosomal protein L4 [Scophthalmus maximus]
          Length = 139

 Score = 37.7 bits (86), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
             D     A RNIP I L  V  +N+  +     +    + ++SA   L++ +
Sbjct: 5   NQDAGVTKAFRNIPGITLQNVNQLNLLRLAPGGHVGRFCIWTESAFRKLDELY 57


>gi|149190957|ref|ZP_01869219.1| zinc metalloproteinase Mpr protein [Vibrio shilonii AK1]
 gi|148835200|gb|EDL52175.1| zinc metalloproteinase Mpr protein [Vibrio shilonii AK1]
          Length = 239

 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 10  DGEDKGVISVSEDIFAL----KPQQGILAR-VLRWQS---WRKRIGCSKSKGRSEVAYTG 61
           +GE    I+++   FA+    +  Q ++   V  WQ     + R G    +   ++   G
Sbjct: 54  EGETTDEIALNPAYFAVCPPEEIMQTLVHEMVHLWQHHFGNKGRGGYHNKEWADKMESLG 113

Query: 62  SKMYVQKGTGRARHSSKSV 80
                    G AR   K  
Sbjct: 114 LMPSSTGQEGGARTGDKMA 132


>gi|70953649|ref|XP_745912.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526380|emb|CAH77375.1| hypothetical protein PC103611.00.0 [Plasmodium chabaudi chabaudi]
          Length = 127

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 26  LKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRG 85
           +K  + ++  ++++           +K RS + ++  K+ VQKGTG+AR  + S +  + 
Sbjct: 36  IKIYKLLIY-IIKYYYLNSIYRYKNTKNRSLINFSKKKIRVQKGTGKARLKTLSSTVCKQ 94

Query: 86  GGKAFGPVPIIGVHALPKKVRSLALRHALSDK 117
           G   FGP     +    K +  L   + L +K
Sbjct: 95  GACTFGPFYKSKIIKYNKFIYKLIFIYLLINK 126


>gi|301500869|ref|YP_003795281.1| ribosomal protein L4 [Chromera velia]
 gi|300069415|gb|ADJ66523.1| ribosomal protein L4 [Chromera velia]
          Length = 272

 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 33  LARVLRWQSWRKRIGC-SKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFG 91
           L +  R++ +  +  C S +  RS+V  +G K   QKG+GRARH S      + GG+ FG
Sbjct: 183 LWKAFRYELYNYKFWCFSSTLTRSQVKASGKKRSPQKGSGRARHGSFRTVFSKKGGRVFG 242

Query: 92  PVPIIGVHALPKKVRSLALR 111
           P      +   +K    A  
Sbjct: 243 PKSHKRNYVFNRKEWIRAFM 262


>gi|73984990|ref|XP_852449.1| PREDICTED: similar to 60S ribosomal protein L4 (L1) [Canis
           familiaris]
          Length = 188

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRN 162
            K    A+      K  ++   V  +   +  K K          +           D  
Sbjct: 24  YKKTKEAVLLLKKLKAWNDIKKVYASQRMRADKGK----MRNRCHIQCRGPCIIHNEDNG 79

Query: 163 FQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
              A RNIP I LL V  +N+  +     +    + + SA   L++ +
Sbjct: 80  IIKAFRNIPGIILLNVSKLNILKLAPGGHVGHFCIWTGSAFHKLDNLY 127


>gi|15558919|dbj|BAB64925.1| ribosomal protein L4 [Paramecium caudatum]
          Length = 252

 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 144 RALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK----LVLSKSAI 199
           +   +    ++     +     A RN+P + ++ V  +N+  +    +    ++ ++SA 
Sbjct: 46  KKYRVRKGPLVVYFNENAKLLKAFRNVPGVEVVNVTRLNLLQLAPGGQLGRFVIWTQSAF 105

Query: 200 EALEDRF 206
             L+  F
Sbjct: 106 ANLDKLF 112


>gi|154308794|ref|XP_001553732.1| 60S ribosomal protein L2 [Botryotinia fuckeliana B05.10]
 gi|150852551|gb|EDN27743.1| 60S ribosomal protein L2 [Botryotinia fuckeliana B05.10]
          Length = 280

 Score = 36.6 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 138 YLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----V 193
            L  R         ++ DG    +    A RN+P +    V  +N+  +     L    +
Sbjct: 104 KLRGRRHRQRRGPLVVYDGNADGKELVRAFRNLPGVETCDVFSLNLLQLAPGGHLGRFII 163

Query: 194 LSKSAIEALEDRF 206
            S SA +AL++ +
Sbjct: 164 WSSSAFKALDNIY 176


>gi|126314532|ref|XP_001379304.1| PREDICTED: similar to Williams-Beuren syndrome critical region
           protein 21 form A [Monodelphis domestica]
          Length = 413

 Score = 36.2 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 22/83 (26%), Gaps = 8/83 (9%)

Query: 31  GILARVLRWQSWRKRIGC-----SKSKGRSEVAYTGSK---MYVQKGTGRARHSSKSVSQ 82
            I+  V                 +  +   E   T      +   +G G   +   +   
Sbjct: 269 HIVNFVHANLKKNNWQPYAVNELAGHQTSVESWGTDRTVAQIPRVRGGGTHHYGQGAFGN 328

Query: 83  FRGGGKAFGPVPIIGVHALPKKV 105
              GG++  P  I  V   P K 
Sbjct: 329 MCQGGRSLCPASIGDVKGHPIKE 351


>gi|13310855|gb|AAK18646.1|AF250390_4 ribosomal protein L4 [Candidatus Carsonella ruddii]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 25/141 (17%)

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
            +G K ++QKGTGRAR  +K    +R GG  F            K V        ++   
Sbjct: 48  GSGKKPWIQKGTGRARAGNKKSPIWRSGGVTFSNYLFKKKKKNQKNVFIN----LINLLI 103

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            SN I + D  +                   N   I   + + NF +             
Sbjct: 104 YSNKIFIFDTSLF-----------LFLNIFFNKKNIFFWENNSNFIIKNIKKIK------ 146

Query: 179 QGINVYDILRCSKLVLSKSAI 199
                 D ++  K+  SK++ 
Sbjct: 147 ----TLDFIKYEKIFFSKNSF 163


>gi|116335056|ref|YP_802551.1| ribosomal protein L4 [Candidatus Carsonella ruddii PV]
 gi|13272300|gb|AAK17083.1|AF274444_13 ribosomal protein L4 [Candidatus Carsonella ruddii]
 gi|116235337|dbj|BAF35185.1| ribosomal protein L4 [Candidatus Carsonella ruddii PV]
          Length = 172

 Score = 36.2 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 25/141 (17%)

Query: 59  YTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHALPKKVRSLALRHALSDKF 118
            +G K ++QKGTGRAR   K    +R GG  F            K V        ++   
Sbjct: 48  GSGKKPWIQKGTGRARAGDKKSPIWRSGGVTFSNYLFKKKKKKQKNVLIN----LINLLI 103

Query: 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLAARNIPNINLLPV 178
            SN I + D          +        +  N  +I   +  +                 
Sbjct: 104 YSNKIFIFDISCFFFLTFFFDKKNIFFWENKNNFLIKNIKKIKIT--------------- 148

Query: 179 QGINVYDILRCSKLVLSKSAI 199
                 D L+  K+  SK++ 
Sbjct: 149 ------DFLKYEKIFFSKNSF 163


>gi|269863846|ref|XP_002651367.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220064660|gb|EED42689.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 216

 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 50/190 (26%), Gaps = 48/190 (25%)

Query: 41  SWRKRIGCS-----KSKGRSEVAYTGSKM---YVQKGTGRARHSSKSVSQFRGGGKAFGP 92
           +   R   +       +  +E   TG  +      KG+G  R    + + F   G+   P
Sbjct: 10  NQNSRQPYAVSPNAGMQHSAESWGTGRAIAKVPRVKGSGTRRSGQGAFANFARKGRMAHP 69

Query: 93  VPIIGVH---------ALPKKVRSLALRHALSDKFCSNDI-------MVIDNLVSKECKT 136
                            L   +   A  HA   +   + I       +V+ + +S   KT
Sbjct: 70  TKTHRRWHKKTPLNTRRLVTAMGVAASGHADIVEARGHRITGVASLPLVVSDTISDIRKT 129

Query: 137 KYLVTRFRALD------------------------LSNALIIDGCQLDRNFQLAARNIPN 172
           +      + ++                          +         D     A  NI  
Sbjct: 130 QEAYQMLQNMNLEQDLKKVRESKTITCGKGKFRGRRYSKQTALLIVHDNAALSAFSNIEG 189

Query: 173 INLLPVQGIN 182
           + L  V  +N
Sbjct: 190 VELANVNSLN 199


>gi|313229135|emb|CBY23720.1| unnamed protein product [Oikopleura dioica]
          Length = 325

 Score = 35.8 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 107 SLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLSNALIIDGCQLDRNFQLA 166
               R   S K       V     +K  KT   + +         +     +   N + A
Sbjct: 195 KSIERSLWSMKARR----VFVIAQTKFNKTTEWMDKLEDKRQREVISTALLERAEN-EKA 249

Query: 167 ARNIPNINLLPVQGINVYDILRCSKL 192
           A+N+   +++   GI V D++    +
Sbjct: 250 AKNLEKQDMVEATGIEVDDMINNELV 275


>gi|67619460|ref|XP_667649.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54658803|gb|EAL37419.1| hypothetical protein Chro.60369 [Cryptosporidium hominis]
          Length = 65

 Score = 35.4 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 4  LSVR--NLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGC 48
          +SV   N   +    I +   +F    +  ++  V    S  KR   
Sbjct: 8  VSVFPSNDSTKATSSIPLP-TVFVSPLRHDLVRYVFTNMSKNKRQAY 53


>gi|228924383|ref|ZP_04087620.1| Transposase, IS605 OrfB [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835263|gb|EEM80667.1| Transposase, IS605 OrfB [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 377

 Score = 35.0 bits (79), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 90  FGPVPIIGVHALPKKVRSLALR-HALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDL 148
                      + KK++    +    +    +  I ++D    ++ K K      R    
Sbjct: 196 HKIDNNKFTSKMEKKLKREQRKLSKRALLAKNKGIHLLDAKNYQKQKCKVARLHER---- 251

Query: 149 SNALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
                +   + D   +L+   I N +++ ++ +N   +LR  KL
Sbjct: 252 -----VINQRDDFLNKLSTEIIKNHDIICIEDLNTKGMLRNHKL 290


>gi|254167060|ref|ZP_04873913.1| peptidase, M24 family [Aciduliprofundum boonei T469]
 gi|197623916|gb|EDY36478.1| peptidase, M24 family [Aciduliprofundum boonei T469]
          Length = 309

 Score = 35.0 bits (79), Expect = 6.5,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 149 SNALIIDGCQLDRNFQLAARN-IPNINLLPVQ---GINVYDILRCSKLVLSK------SA 198
              +I+ G +       ++ N I    ++ V     IN Y  L  S+++ ++       A
Sbjct: 159 YPTIIVSGGRSKYLLPKSSENKIEKGKIIYVDSSPQINGYH-LNFSRVIFTEERIEWVEA 217

Query: 199 IEALEDRF 206
           +E +   +
Sbjct: 218 LEKINKMY 225


>gi|269863611|ref|XP_002651284.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
 gi|220064813|gb|EED42773.1| LSU ribosomal protein L1E [Enterocytozoon bieneusi H348]
          Length = 56

 Score = 34.7 bits (78), Expect = 7.1,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 1  MIELSVRNLDGED-KGVISVSEDIFALKPQQGILARVLRWQSWRKR 45
          M+ ++V   DG++  G I+    +F ++ +  ++ +     +   +
Sbjct: 1  MMNVNVYGKDGKNVVGEIA-KPKVFDIELRPDMVMKTFACVNQNSK 45


>gi|324506269|gb|ADY42681.1| 60S ribosomal protein L4 [Ascaris suum]
          Length = 281

 Score = 34.7 bits (78), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 160 DRNFQLAARNIPNINLLPVQGINVYDIL---RCSKLVL-SKSAIEAL 202
           D     A RNIP + L  V  +N+  I       +L++ ++SA   L
Sbjct: 120 DSGVVRAFRNIPGVELQCVDRLNLLRIAPGGHAGRLIIWTESAFRKL 166


>gi|311334996|emb|CBH31367.1| ribosomal protein L4 [Oreochromis mossambicus]
          Length = 165

 Score = 34.3 bits (77), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 158 QLDRNFQLAARNIPNINLLPVQGINVYDILRCSKL----VLSKSAIEALEDRF 206
             D     A RNIP I L  V  +N+  +     +    + ++SA   L+D +
Sbjct: 8   NQDGGVTKAFRNIPGITLQNVNKLNLLRLAPGGHVGRFCIWTESAFRKLDDLY 60


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.310    0.133    0.353 

Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,586,196,240
Number of Sequences: 13984884
Number of extensions: 62131360
Number of successful extensions: 200600
Number of sequences better than 10.0: 2663
Number of HSP's better than 10.0 without gapping: 2433
Number of HSP's successfully gapped in prelim test: 230
Number of HSP's that attempted gapping in prelim test: 195336
Number of HSP's gapped (non-prelim): 2898
length of query: 207
length of database: 4,792,584,752
effective HSP length: 133
effective length of query: 74
effective length of database: 2,932,595,180
effective search space: 217012043320
effective search space used: 217012043320
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 78 (34.7 bits)