RPSBLAST alignment of GI: 254780260 and protein with PDBid: 2wwb
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 1s1i_D Length = 362
Score = 140 bits (354), Expect = 2e-34
Identities = 39/258 (15%), Positives = 80/258 (31%), Gaps = 54/258 (20%)
Query: 3 ELSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKS-----KGRSEV 57
+++V +L GE +F+ + I+ V + KR + S + +E
Sbjct: 5 QVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAES 64
Query: 58 AYTG---SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRH 112
TG +++ G G R + GG+ F P + + A
Sbjct: 65 WGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATAS 124
Query: 113 ALSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFRALDL---------- 148
A++ ++ ++ V+ + KTK V +A+
Sbjct: 125 AIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKVLKS 184
Query: 149 ----------SNALIIDGCQL------DRNFQLAARNIPNINLLPVQGINVYDILRCSKL 192
N D A RN+P + V +N+ + + L
Sbjct: 185 KKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPGAHL 244
Query: 193 ----VLSKSAIEALEDRF 206
+ +++A L+ +
Sbjct: 245 GRFVIWTEAAFTKLDQVW 262