RPSBLAST alignment of GI: 254780260 and protein with PDBid: 2zkr
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421
Score = 113 bits (283), Expect = 3e-26
Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 58/260 (22%)
Query: 4 LSVRNLDGEDKGVISVSEDIFALKPQQGILARVLRWQ--SWRKRIGCSKSKG---RSEVA 58
+SV + GE G +F + I+ V + R+ S+ G +E
Sbjct: 8 ISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESW 67
Query: 59 YTG---SKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPIIGVHA--LPKKVRSLALRHA 113
TG +++ +G G R + GG+ F P + + A+ A
Sbjct: 68 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSA 127
Query: 114 LSDKFCSNDIM--------------VIDNLVSKECKTKYLVTRFRALDLSN--------- 150
L+ +M V+++ V KTK V + L N
Sbjct: 128 LACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQ 187
Query: 151 -------------------ALIIDGCQLDRNFQLAARNIPNINLLPVQGINVYDILRCSK 191
II D A R P I LL V +N+ +
Sbjct: 188 RMRAGKGKMRNRRRIQRRGPCIIYN--EDNGIIKAFRKHPGITLLNVSKLNILKLAPGGH 245
Query: 192 L----VLSKSAIEALEDRFK 207
+ + ++SA L+D +
Sbjct: 246 VGRFCIWTESAFRKLDDLYG 265