HHsearch alignment for GI: 254780261 and conserved domain: COG0087

>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=549.14  Aligned_cols=214  Identities=51%  Similarity=0.795  Sum_probs=205.2

Q ss_pred             CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf             44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r    2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF   81 (221)
Q Consensus         2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~   81 (221)
T Consensus         1 ~~G~~G~KvGMT~vf~~~g~~vPVTVie~~p~~V~~vkt~e~~Gy~a~qv~~~~~k~~~~~k~~~g~~~k~~~~~k~~l~   80 (218)
T COG0087           1 MLGFLGYKVGMTHVFDERGISVPVTVIEVPPNVVVQVKTYETDGYRAVQVGAGDRKAKRVNKPLVGHFAKAGVKPKRHLA   80 (218)
T ss_pred             CCCCCEEECCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCEEEEHHCCCEEEEECCCCCCCCCEEE
T ss_conf             95411684176699842895887899982895899999402588189997406203201043123541336787787279


Q ss_pred             EEECCCCH--HHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             53206511--2110034100012302532657898753433640575044212333577454346665555567522422
Q gi|254780261|r   82 EFRVQKDD--DLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFK  159 (221)
Q Consensus        82 Efrv~~~~--~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~k  159 (221)
T Consensus        81 E~rv~~~~~~~~~e~g~ei~~dvF~~g~~VDV~gvTKGKGF~G~~KR~gf~~~p~sHg~~~~hR~~GSiG~~~~P~rV~~  160 (218)
T COG0087          81 EFRVGGGDVAEKFEVGQEITVDVFKEGELVDVTGVTKGKGFQGVMKRWGFKGGPASHGSSLSHRRPGSIGQRQTPGRVFK  160 (218)
T ss_pred             EEEECCCCCCCCCCHHHHHCHHHCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf             99715876421031366514633358887999988636564110554124668764578866657734689898976627


Q ss_pred             CCCCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf             676665237733365165899980768989997157458887099996031467785
Q gi|254780261|r  160 NKKMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNC  216 (221)
Q Consensus       160 Gkkm~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~  216 (221)
T Consensus       161 g~kmaG~mG~~~vTvqNl~Vv~id~e~~~ilVkGaVPG~-~k~~v~vr~a~k~~~~~  216 (218)
T COG0087         161 GKKMAGHMGNERVTVQNLEVVKVDVENNLILVKGAVPGA-KKRLVVVRPAVKAKKKT  216 (218)
T ss_pred             CCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCC-CCCEEEEEHHHCCCCCC
T ss_conf             974575678845888755999983778889996246788-88569985122267767