HHsearch alignment for GI: 254780261 and conserved domain: COG0087
>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=549.14 Aligned_cols=214 Identities=51% Similarity=0.795 Sum_probs=205.2
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
T Consensus 1 ~~G~~G~KvGMT~vf~~~g~~vPVTVie~~p~~V~~vkt~e~~Gy~a~qv~~~~~k~~~~~k~~~g~~~k~~~~~k~~l~ 80 (218)
T COG0087 1 MLGFLGYKVGMTHVFDERGISVPVTVIEVPPNVVVQVKTYETDGYRAVQVGAGDRKAKRVNKPLVGHFAKAGVKPKRHLA 80 (218)
T ss_pred CCCCCEEECCCEEEECCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCEEEEHHCCCEEEEECCCCCCCCCEEE
T ss_conf 95411684176699842895887899982895899999402588189997406203201043123541336787787279
Q ss_pred EEECCCCH--HHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 53206511--2110034100012302532657898753433640575044212333577454346665555567522422
Q gi|254780261|r 82 EFRVQKDD--DLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFK 159 (221)
Q Consensus 82 Efrv~~~~--~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~k 159 (221)
T Consensus 81 E~rv~~~~~~~~~e~g~ei~~dvF~~g~~VDV~gvTKGKGF~G~~KR~gf~~~p~sHg~~~~hR~~GSiG~~~~P~rV~~ 160 (218)
T COG0087 81 EFRVGGGDVAEKFEVGQEITVDVFKEGELVDVTGVTKGKGFQGVMKRWGFKGGPASHGSSLSHRRPGSIGQRQTPGRVFK 160 (218)
T ss_pred EEEECCCCCCCCCCHHHHHCHHHCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 99715876421031366514633358887999988636564110554124668764578866657734689898976627
Q ss_pred CCCCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 676665237733365165899980768989997157458887099996031467785
Q gi|254780261|r 160 NKKMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNC 216 (221)
Q Consensus 160 Gkkm~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~ 216 (221)
T Consensus 161 g~kmaG~mG~~~vTvqNl~Vv~id~e~~~ilVkGaVPG~-~k~~v~vr~a~k~~~~~ 216 (218)
T COG0087 161 GKKMAGHMGNERVTVQNLEVVKVDVENNLILVKGAVPGA-KKRLVVVRPAVKAKKKT 216 (218)
T ss_pred CCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCC-CCCEEEEEHHHCCCCCC
T ss_conf 974575678845888755999983778889996246788-88569985122267767