HHsearch alignment for GI: 254780261 and conserved domain: PRK04231
>PRK04231 rpl3p 50S ribosomal protein L3P; Reviewed.
Probab=100.00 E-value=0 Score=354.50 Aligned_cols=212 Identities=31% Similarity=0.436 Sum_probs=167.9
Q ss_pred CCEEEEECCCCEEECCCCC----------EEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCC---C---CCCCCCCHH
Q ss_conf 4268996584516988987----------92268999179789999706778861256405555---6---431571011
Q gi|254780261|r 3 SGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEA---K---VKNVSKPMR 66 (221)
Q Consensus 3 ~Glig~KiGMT~if~e~G~----------~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~---k---~k~~~Kp~~ 66 (221)
T Consensus 37 ~gF~GYKAGMTHvv~~dd~p~S~~~gkEi~~pVTViEtPPm~V~gvr~Y~~tp~Gl~~l~evwa~~l~~el~Rri~~~k~ 116 (333)
T PRK04231 37 LGFAGYKAGMTHVIMIDDRPNSPTEGKEIFVPVTVLETPPLRVAGIRAYEKDPYGLKALTEVWADDLDKELSRRITLPKK 116 (333)
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHCCCCCC
T ss_conf 68736425775999964889997689378876677506986999999988879986898999404678888741045555
Q ss_pred H----HHHH-----------------------HCCCCCC-EEEEEECCCCH--HHH-----HCCCCEEE-EEECCCCEEE
Q ss_conf 2----5764-----------------------0356341-03653206511--211-----00341000-1230253265
Q gi|254780261|r 67 G----FFSS-----------------------VNVSPKK-KLFEFRVQKDD--DLL-----PVGSVFSP-SYFTVGQLVD 110 (221)
Q Consensus 67 G----~fkK-----------------------~g~~pk~-~l~Efrv~~~~--~~~-----~vG~~i~~-~~F~~Gq~VD 110 (221)
T Consensus 117 ~~~~~~~~k~~~~~~~~~~~vRvIv~Tqp~~~~g~~kKkp~imEi~i~GGsi~~kl~~a~~~LgKei~v~dvF~~g~~vD 196 (333)
T PRK04231 117 DDKEKALEKLEELLDGKVVDVRVIVHTQPKLVTGVPKKKPEIMEIRIGGGSVEERLEYAKELLGKEVSISDVFKEGQLVD 196 (333)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEEEECHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEECHHHHHCCCCEEE
T ss_conf 56577799998765256228999998350003587667874999941799989999999998478022667314794688
Q ss_pred EEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEEEC------
Q ss_conf 78987534336405750442123335774543466655555675224226766652377333651658999807------
Q gi|254780261|r 111 VTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSVDD------ 184 (221)
Q Consensus 111 V~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~~nl~i~~id~------ 184 (221)
T Consensus 197 v~gvTKGkGfqG~vkR~g~~~~~~kh~~~k~~R~~g~iG~-~~p~rV~~~v~~aGq~G~h~Rte~Nk~i~~ig~~~~~It 275 (333)
T PRK04231 197 VIAVTKGKGFQGVVKRWGVKLLPRKHKRRKGSRRVGTLGP-WHPSRVMWTVPQAGQMGFHQRTEYNKRILKIGDNGEEIT 275 (333)
T ss_pred EEEEECCCCCCCCEEECCEECCCCCCCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCEEEEEEEEEEEECCCCCCCC
T ss_conf 8875203554321576010015521356666435652378-888734545654776787447786428999558986035
Q ss_pred -----------CCCEEEEECCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf -----------68989997157458887099996031467785
Q gi|254780261|r 185 -----------KRGLILVKGCVPGAKKNSWILVRDSFKSAVNC 216 (221)
Q Consensus 185 -----------e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~ 216 (221)
T Consensus 276 P~GGF~~YG~Vkndyi~ikGsvpGp~KR-~i~lR~~irp~~~~ 317 (333)
T PRK04231 276 PKGGFLHYGLVRNDYVLIKGSVPGPAKR-LIRLRPPIRPPEKK 317 (333)
T ss_pred CCCCCCCCCEECCCEEEEECCCCCCCCC-EEEECCCCCCCCCC
T ss_conf 6788653425637779997046887761-38970003588565