HHsearch alignment of GI: 254780261 and MMDB domain: 2zjr_B_1-29_91-211
>2zjr_B (B:1-29,B:91-211) 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}
Probab=100.00 E-value=0 Score=376.27 Aligned_cols=148 Identities=45% Similarity=0.719 Sum_probs=137.4
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
+.|++|.|+||||+|..| .++||||+-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------------------------------------------- 28 (150)
T 2zjr_B 1 MKGILGTKIGMTQIWKND-RAIPVTVVLA--------------------------------------------------- 28 (150)
T ss_dssp CCEEEEEEEEEEEEEETT-EEEEEEEEEC---------------------------------------------------
T ss_pred CCEEEEEECCCEEEEECC-CEEEEEEEEE---------------------------------------------------
T ss_conf 946989952560488699-9899899995---------------------------------------------------
Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221)
Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221)
-|++|+|++||+|||+|+||||||||+||||||+++|+|||+|++||+|||||++++|+|||||+
T Consensus 29 ---------------~l~v~~F~~Gq~VDV~g~SKGKGFqGviKRwgf~ggp~sHG~sk~hR~~GSiG~~~~P~RV~kGk 93 (150)
T 2zjr_B 29 ---------------GVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGK 93 (150)
T ss_dssp ---------------CCSTTTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCCSSTTCSCCTTC
T ss_pred ---------------CCCCCCCCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf ---------------71333002898899999860446766235622155751136875323576544667576493478
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 66652377333651658999807689899971574588870999960314677853
Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCK 217 (221)
Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~k 217 (221)
|||||||++++|++||+|++||+|+|||||||||||| ++++|+|+||+++..+..
T Consensus 94 kMaG~mG~~~~Tv~Nl~VvrId~e~nlilVKGsVPG~-~~~~V~ir~s~k~~~~k~ 148 (150)
T 2zjr_B 94 RMAGHMGMERVTVQNLEVVEIRAGENLILVKGAIPGA-NGGLVVLRSAAKASAAKG 148 (150)
T ss_dssp CCCEEEECCEEEEEEEEEEEEETTTTEEEEESCCSSC-TTCEEEEEBCSSCC----
T ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCC-CCCEEEEEECCCCCCCCC
T ss_conf 6677315558986597899996889989995167689-998999984556676756