HHsearch alignment of GI: 254780261 and MMDB domain: 3i1n_D_1-30_102-209
>3i1n_D (D:1-30,D:102-209) 50S ribosomal protein L3; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_B 1p86_B 1vs8_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vs6_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D 2qox_D ...
Probab=100.00 E-value=0 Score=388.71 Aligned_cols=138 Identities=52% Similarity=0.828 Sum_probs=132.3
Q ss_pred CCCEEEEECCCCEEECCCCCEEEEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
Q ss_conf 44268996584516988987922689991797899997067788612564055556431571011257640356341036
Q gi|254780261|r 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLF 81 (221)
Q Consensus 2 r~Glig~KiGMT~if~e~G~~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~~~k~k~~~Kp~~G~fkK~g~~pk~~l~ 81 (221)
++||||+|+||||+|||||.++||||||++
T Consensus 1 m~gi~g~k~gmtqvf~~~g~~ipvtvi~~~-------------------------------------------------- 30 (138)
T 3i1n_D 1 MIGLVGKKVGMTRIFTEDGVSIPVTVIEVE-------------------------------------------------- 30 (138)
T ss_dssp CCCEEEEECCCEEEEETTTEEEEEEEEECC--------------------------------------------------
T ss_pred CCEEEEEECCCCEEECCCCCEEEEEEEEEC--------------------------------------------------
T ss_conf 914749954881788889969987999947--------------------------------------------------
Q ss_pred EEECCCCHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 53206511211003410001230253265789875343364057504421233357745434666555556752242267
Q gi|254780261|r 82 EFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNK 161 (221)
Q Consensus 82 Efrv~~~~~~~~vG~~i~~~~F~~Gq~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGk 161 (221)
++||+|||+|+||||||||+||||||+++|+|||.|++||++||||++++|+|||||+
T Consensus 31 ----------------------~~Gq~VDV~g~tKGKGFqGvmKRwgf~g~p~sHg~sk~hR~~GSiG~~~~p~RV~kgk 88 (138)
T 3i1n_D 31 ----------------------ADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGK 88 (138)
T ss_dssp ----------------------SSCSCCCCBCCCCBCTTCCTTTTTCCCCCCSSTTCCSCSSSCCCCCCCTTTCSCCTTC
T ss_pred ----------------------ECCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf ----------------------1797699999983842667356635335674368874000466655556577152788
Q ss_pred CCCCCCCCEEEEECCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCC
Q ss_conf 666523773336516589998076898999715745888709999603146
Q gi|254780261|r 162 KMAGRMGGNRVTVKNLEVVSVDDKRGLILVKGCVPGAKKNSWILVRDSFKS 212 (221)
Q Consensus 162 km~G~mG~~~~T~~nl~i~~id~e~n~i~vkGsVPG~~~~~~v~ir~a~k~ 212 (221)
|||||||++++|++||+|++||+|+|||||||||||| ++++|+||||+|+
T Consensus 89 kmaG~mG~~~~T~~Nl~V~rI~~e~nli~vkGsVPG~-~~~~v~ir~aika 138 (138)
T 3i1n_D 89 KMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGA-TGSDLIVKPAVKA 138 (138)
T ss_dssp CCCCCCBCSCCBCCCCCEEECCTTTTCCEESSCCSSC-TTCEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCEEEEEECCCCEEEEEECCCCC-CCCEEEEEECCCC
T ss_conf 6788658962778478999995889999998458789-9999999646459