HHsearch results for GI: 254780261 and protein with PDBid: 1vq8_B

>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=100.00  E-value=0  Score=500.67  Aligned_cols=214  Identities=24%  Similarity=0.321  Sum_probs=188.8

Q ss_pred             CCCEEEEECCCCEEECCCCC----------EEEEEEEEECCCEEEEEEECCCCCCEEEEECCC------CCCCCCCCCCH
Q ss_conf             44268996584516988987----------922689991797899997067788612564055------55643157101
Q gi|254780261|r    2 RSGVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAG------EAKVKNVSKPM   65 (221)
Q Consensus         2 r~Glig~KiGMT~if~e~G~----------~vpVTViev~~~~Vv~~kt~ekdGY~Avqvg~~------~~k~k~~~Kp~   65 (221)
                      ..||||+|+||||+|++||.          .+||||||++||.|+|+||+|+|||.|+|||+.      +...+++++|+
T Consensus        39 l~G~iG~KvGMT~v~~~d~~~~s~~~g~~i~vPVTVIe~~P~~Vv~ikt~~kdgy~avqlg~~~~~~~~~~~~r~~~~~~  118 (338)
T 1vq8_B           39 VQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPE  118 (338)
T ss_dssp             ECCEEEEEEEEEEEEEECCCTTCTTTTSEEEEEEEEEECCCEEEEEEEEEEEETTEEEEEEEEECSCCCTTGGGTSCCCS
T ss_pred             EEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCCCHHHHHCCCHHH
T ss_conf             37886870374599972797577545751577679998388389999736227983399999860244424310366333


Q ss_pred             HHHHHHHCC----------------------------C-CCCEEEEEECCCC---------HHHHHCCCCEEE-EEECCC
Q ss_conf             125764035----------------------------6-3410365320651---------121100341000-123025
Q gi|254780261|r   66 RGFFSSVNV----------------------------S-PKKKLFEFRVQKD---------DDLLPVGSVFSP-SYFTVG  106 (221)
Q Consensus        66 ~G~fkK~g~----------------------------~-pk~~l~Efrv~~~---------~~~~~vG~~i~~-~~F~~G  106 (221)
                      .++++++..                            + .+.++.||++...         .+.+++|++|.+ |+|++|
T Consensus       119 ~~~~k~~~~~~k~~~e~~~~~~irvi~~t~p~~~~~~~~Kk~~i~E~~v~G~~~~~k~~~~~~~~~~G~ei~v~dvF~~G  198 (338)
T 1vq8_B          119 DHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAG  198 (338)
T ss_dssp             SCCHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCTTSCCCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTTTCCTT
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEECC
T ss_conf             45633301567655552464048988410642023424467201256316885334222334320357468844123089


Q ss_pred             CEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEECCCEEEEE----
Q ss_conf             3265789875343364057504421233357745434666555556752242267666523773336516589998----
Q gi|254780261|r  107 QLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV----  182 (221)
Q Consensus       107 q~VDV~g~SkGKGFqGviKR~gf~g~~~sHG~sk~hR~~GsiG~~~~PgRV~kGkkm~G~mG~~~~T~~nl~i~~i----  182 (221)
                      |+|||+|+||||||||+||||||+++|+|||++++||++||||+ |+|+|||||++|||||||++||++||+|++|    
T Consensus       199 ~~VDV~g~TKGKGFqGv~KR~gf~g~p~sHg~~~~hR~~GsiG~-~~PgRV~kg~kmaGqmG~~~rT~~Nl~Iv~I~~~~  277 (338)
T 1vq8_B          199 EYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGD  277 (338)
T ss_dssp             CEEEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSCC-SSSSSCCTTSCCCEECSCCEEEEEEEEEEEEEEES
T ss_pred             CEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCC
T ss_conf             88999998605555201787021356865688887868834788-88985747886698868863798343999972765


Q ss_pred             ------------ECCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf             ------------07689899971574588870999960314677853
Q gi|254780261|r  183 ------------DDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCK  217 (221)
Q Consensus       183 ------------d~e~n~i~vkGsVPG~~~~~~v~ir~a~k~~~~~k  217 (221)
                                  |.|+|||||||||||| ++++|+||+|+|+....+
T Consensus       278 ~~n~~gGf~~ygd~e~n~ilVKGsVPG~-~~~~v~ir~a~k~~~~~~  323 (338)
T 1vq8_B          278 EPTVDGGFVNYGEVDGPYTLVKGSVPGP-DKRLVRFRPAVRPNDQPR  323 (338)
T ss_dssp             SSCCTTCBTTTBCCCEEEEEEESCCSSC-TTCEEEEEECSSCSSCCC
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCC-CCCEEEEECCCCCCCCCC
T ss_conf             5445677203313138889998456588-994899930236787666