PSIBLAST alignment of GI: 254780261 and protein with PDB id: 1ffk

>gi|27066406|pdb|1FFK|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 337

 Score = 99.3 bits (246), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 75/279 (26%), Gaps = 71/279 (25%)

Query: 4   GVVARKLGMTCVYNIEGR---------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAG 54
           G    K GMT V  +             +PVTV+     + V  R  +   Y    +   
Sbjct: 40  GFAGYKAGMTHVVLVNDEPNSPREGMETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEV 99

Query: 55  EAKVKN-----VSKPMRGFFSSVNVS----------------------------PKKKL- 80
                +                                                PKKK  
Sbjct: 100 WTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPD 159

Query: 81  -----------FEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNF 129
                       +      D +   G       F  G+  DV G+T GKG  G +KR   
Sbjct: 160 VMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGV 219

Query: 130 GGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV------- 182
              +  H      R  G+ G   +P RV       G+ G ++ T  N  ++ +       
Sbjct: 220 QKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPT 278

Query: 183 ---------DDKRGLILVKGCVPGAKKNSWILVRDSFKS 212
                    +      LVKG VPG  K      R + + 
Sbjct: 279 VDGGFVNYGEVDGPYTLVKGSVPGPDKRLVPFFRPAVRP 317