PSIBLAST alignment of GI: 254780261 and protein with PDB id: 1jj2

>gi|15825944|pdb|1JJ2|B Chain B, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 337
>gi|20150989|pdb|1KQS|B Chain B, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis Length = 337

 Score = 99.7 bits (247), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 76/280 (27%), Gaps = 73/280 (26%)

Query: 4   GVVARKLGMTCVYNIEGR----------RIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGA 53
           G    K GMT V  +              +PVTV+     + V  R  +   Y    +  
Sbjct: 40  GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTE 99

Query: 54  GEAKVKN-----VSKPMRGFFSSVNVS----------------------------PKKKL 80
                 +                                                PKKK 
Sbjct: 100 VWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKP 159

Query: 81  ------------FEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKRHN 128
                        +      D +   G       F  G+  DV G+T GKG  G +KR  
Sbjct: 160 DVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWG 219

Query: 129 FGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVSV------ 182
               +  H      R  G+ G   +P RV       G+ G ++ T  N  ++ +      
Sbjct: 220 VQKRKGKHARQGWRRRIGNLGP-WNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP 278

Query: 183 ----------DDKRGLILVKGCVPGAKKNSWILVRDSFKS 212
                     +      LVKG VPG  K   +  R + + 
Sbjct: 279 TVDGGFVNYGEVDGPYTLVKGSVPGPDKR-LVRFRPAVRP 317