PSIBLAST alignment of GI: 254780261 and protein with PDB id: 1pnu
>gi|34811555|pdb|1PNU|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 205
>gi|34811608|pdb|1PNY|B Chain B, Crystal Structure Of The Wild Type Ribosome From E. Coli, 50s Subunit Of 70s Ribosome. This File, 1pny, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit Is In The Pdb File 1pnx. Length = 205
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 89/212 (41%), Positives = 122/212 (57%), Gaps = 7/212 (3%)
Query: 2 RSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKNV 61
G++ K+GMT ++ R IPVTV+ C +V +T +GY AVQ+G + V
Sbjct: 1 MKGILGTKIGMTQIW-KNDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKV 59
Query: 62 SKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGFS 121
+KPM+G F+ V+P + L EFR D G + F G+ +D TG + GKG
Sbjct: 60 NKPMQGHFAKAGVAPTRILREFRGFAPD-----GDSVNVDIFAEGEKIDATGTSKGKGTQ 114
Query: 122 GAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVVS 181
G MKR NF G A+HG HR GS G R+ PGRV+K K+MAG MG RVTV+NLEVV
Sbjct: 115 GVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVE 174
Query: 182 VDDKRGLILVKGCVPGAKKNSWILVRDSFKSA 213
+ LILVKG +PGA +++R + K++
Sbjct: 175 IRAGENLILVKGAIPGA-NGGLVVLRSAAKAS 205