BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3
[Candidatus Liberibacter asiaticus str. psy62]
(221 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 221
Score = 447 bits (1150), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN 60
MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN
Sbjct: 1 MRSGVVARKLGMTCVYNIEGRRIPVTVLHLDNCQVVVHRTLDKNGYMAVQVGAGEAKVKN 60
Query: 61 VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF 120
VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF
Sbjct: 61 VSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLLPVGSVFSPSYFTVGQLVDVTGMTIGKGF 120
Query: 121 SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV 180
SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV
Sbjct: 121 SGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDPGRVFKNKKMAGRMGGNRVTVKNLEVV 180
Query: 181 SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS 221
SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS
Sbjct: 181 SVDDKRGLILVKGCVPGAKKNSWILVRDSFKSAVNCKGKVS 221
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 26.2 bits (56), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 21/57 (36%)
Query: 98 FSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDP 154
FSP TV QLV + F K F L G S+S S GS P
Sbjct: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
asiaticus str. psy62]
Length = 467
Score = 23.5 bits (49), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 33 CQVVVHRTLDKNGYMAVQVGAGEAKVKNVSKPMRGFFSSVNVSPKKKLFEFRVQKDDDLL 92
C+ V+ + ++G+ + +GA A + KP+ F + F F +Q D +
Sbjct: 186 CERVIDTPITEHGFAGIGIGASFAGL----KPIVEFMT----------FNFAMQAIDQI- 230
Query: 93 PVGSVFSPSYFTVGQLVDVTGMTIGKGFSGAMKR 126
+ S Y + GQ +T + +G +GA R
Sbjct: 231 -INSAAKTRYMSGGQ---ITTSIVFRGPNGAAAR 260
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 23.1 bits (48), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 52 GAGEAKVKNVSKPMR 66
G++ VKN+SKP+R
Sbjct: 191 SEGKSSVKNISKPLR 205
>gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 298
Score = 23.1 bits (48), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 58 VKNVSKPMRGFFSSVNVSPKKKLFEF 83
KN + F ++N+ PKK F F
Sbjct: 221 TKNYDSALEDFKFAINLDPKKASFWF 246
>gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 22.7 bits (47), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 126 RHNFGGLRATHGVSISHRS-HGS 147
R++ L +G++ISHRS HG+
Sbjct: 138 RNDLNSLCKRYGITISHRSKHGA 160
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 22.3 bits (46), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 156 RVFKNKKMAGRMGGNRV---TVKNLEVVSVDDKRGLILVKGCVPGA 198
RV +NK MA R+G + VKN +S K +++KG V G+
Sbjct: 651 RVTRNKSMARRLGSHSALEKLVKNAN-ISSKMKEFPVIIKGDVQGS 695
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,371
Number of Sequences: 1233
Number of extensions: 5780
Number of successful extensions: 17
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 10
length of query: 221
length of database: 328,796
effective HSP length: 71
effective length of query: 150
effective length of database: 241,253
effective search space: 36187950
effective search space used: 36187950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)