HHsearch alignment of GI: 254780262 and MMDB domain: 3d3b_J_
>3d3b_J (J:) 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermination; HET: NHE; 1.30A {Escherichia coli K12} PDB: 3imq_J 3d3c_J
Probab=99.92 E-value=1.7e-25 Score=169.31 Aligned_cols=82 Identities=54% Similarity=0.816 Sum_probs=78.4
Q ss_pred CCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHEEEEEEEEEEECC
Q ss_conf 98864899999971688999999999999997188011564898213699873067898631423522334457879769
Q gi|254780262|r 2 TSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQLEMRIYKRLLYIIKP 81 (104)
Q Consensus 2 ~~~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~KksreqfE~r~hkRlI~i~~~ 81 (104)
..++|||||+|+||||..||++|++|+++++.+|+.++|||||||++ |+|||+|||+++
T Consensus 5 ~~~~~kirIkL~s~d~~~Ld~~~~~Ii~~ak~~~~~v~GPIpLPTk~---------------------RiHKRlIdi~~~ 63 (87)
T 3d3b_J 5 SMQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS---------------------RTHLRLVDIVEP 63 (87)
T ss_dssp TCTTCEEEEEEEESCHHHHHHHHHHHHHHHHTTTCEEEEEEEEEEET---------------------TEEEEEEEEESC
T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC---------------------EEEEEEEEECCC
T ss_conf 62306399999975688999999999999875599785251488755---------------------057377677079
Q ss_pred CHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 98999998647899984589989
Q gi|254780262|r 82 TPQTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 82 ~~~~~~~l~~~~lp~gV~i~i~~ 104 (104)
+++++++||+++||+||+|||++
T Consensus 64 ~~~~i~~L~~l~lp~GV~vei~i 86 (87)
T 3d3b_J 64 TEKTVDALMRLDLAAGVDVQISL 86 (87)
T ss_dssp CHHHHHHHHHCCCCTTEEEEEEE
T ss_pred CHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 98999998579999997699997