HHsearch results for GI: 254780262 and protein with PDBid: 2zkq_j
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.6e-37 Score=236.50 Aligned_cols=101 Identities=25% Similarity=0.445 Sum_probs=96.1
Q ss_pred CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHCCEECCCCCCCCEEEEEEEECCCCCC-CCCHHHHHEEEEEEEEEEECC
Q ss_conf 8864899999971688999999999999997188011564898213699873067898-631423522334457879769
Q gi|254780262|r 3 SRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD-KKSRDQLEMRIYKRLLYIIKP 81 (104)
Q Consensus 3 ~~~~kirIkl~s~d~~~Ld~~~~~i~~~a~~~g~~v~GpipLPtk~~~~tvlrSPhv~-KksreqfE~r~hkRlI~i~~~ 81 (104)
...|||||+|+|||+.+||.+|++|+++|+.+|+.++||+||||++.+||++||||++ |+||||||||+|+|+|+|.+
T Consensus 15 ~~~qkirI~L~S~d~~~Ld~~~~~I~~~a~~~g~~v~GPipLPtk~~~~tvlrSP~~~~kksreqfE~r~hkRli~i~~- 93 (119)
T 2zkq_j 15 VAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHS- 93 (119)
T ss_dssp ----CBCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCCCCCCEEEEEEECSSSSCTTCTTCEEEEEEEBCCCCCBCS-
T ss_pred HCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEEEEECCCCCCCCCCHHHEEEEEEEEEEEEEC-
T ss_conf 2005999999978886899999999999998299462886799547889850487568982467636777789999818-
Q ss_pred CHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 98999998647899984589989
Q gi|254780262|r 82 TPQTVDALMKLDIAAGVNVVIKL 104 (104)
Q Consensus 82 ~~~~~~~l~~~~lp~gV~i~i~~ 104 (104)
++++++.||++++|+||+|+|+|
T Consensus 94 ~~~~~~~l~~~~lP~gV~Iei~l 116 (119)
T 2zkq_j 94 PSEIVKQITSISIEPGVEVEVTI 116 (119)
T ss_dssp CTHHHHHHHHCCCCSSEEEEEC-
T ss_pred CHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 29999999689899985899999