PSIBLAST alignment of GI: 254780262 and protein with PDB id: 3d3c

>gi|220702385|pdb|3D3C|J Chain J, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. Length = 87
>gi|220702387|pdb|3D3C|K Chain K, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. Length = 87
 Score =  115 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 21/103 (20%)

Query: 2   TSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDK 61
           + +N RI I LKAFD R++D +  EIV T K++G+Q+ GPIP P                
Sbjct: 5   SMQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRS------------- 51

Query: 62  KSRDQLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104
                   R + RL+ I++PT +TVD LM+LD+AAGV+V I L
Sbjct: 52  --------RTHLRLVDIVEPTEKTVDDLMRLDLAAGVDVQISL 86