RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780262|ref|YP_003064675.1| 30S ribosomal protein S10 [Candidatus Liberibacter asiaticus str. psy62] (104 letters) >3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Mesembryanthemum crystallinum} SCOP: i.1.1.1 Length = 197 Score = 126 bits (319), Expect = 8e-31 Identities = 38/98 (38%), Positives = 67/98 (68%) Query: 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQ 66 +I I L+++ +++ S ++I+ + + ++ +GP+P P R F V +SPHV K +R Sbjct: 100 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFH 159 Query: 67 LEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104 E+R ++RL+ I+ PT QT+D+LM+LD+ AGV+V +KL Sbjct: 160 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197 >3i1m_J 30S ribosomal protein S10; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_J 1p87_J* 1vs7_J* 2avy_J 2aw7_J 1vs5_J 2i2u_J 2i2p_J* 2qan_J* 2qb9_J* 2qbb_J* 2qbd_J 2qbf_J 2qbh_J* 2qbj_J* 2qou_J* 2qow_J* 2qoy_J* 2qp0_J* 2vho_J ... Length = 103 Score = 123 bits (311), Expect = 7e-30 Identities = 56/98 (57%), Positives = 74/98 (75%) Query: 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQ 66 RI I LKAFD R++D + EIV T K++G+Q+ GPIP P RFTV SPHV+K +RDQ Sbjct: 5 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQ 64 Query: 67 LEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104 E+R + RL+ I++PT +TVDALM+LD+AAGV+V I L Sbjct: 65 YEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 102 >3ofo_J 30S ribosomal protein S10; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_J* 2wwl_J 3ofp_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* 2avy_J 2aw7_J 1vs5_J 2i2u_J 2i2p_J* 2qan_J* 2qb9_J* 2qbb_J* 2qbd_J 2qbf_J 2qbh_J* 2qbj_J* 2qou_J* ... Length = 98 Score = 118 bits (298), Expect = 2e-28 Identities = 56/98 (57%), Positives = 74/98 (75%) Query: 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQ 66 RI I LKAFD R++D + EIV T K++G+Q+ GPIP P RFTV SPHV+K +RDQ Sbjct: 1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQ 60 Query: 67 LEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104 E+R + RL+ I++PT +TVDALM+LD+AAGV+V I L Sbjct: 61 YEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 98 >2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ... Length = 105 Score = 117 bits (295), Expect = 6e-28 Identities = 44/98 (44%), Positives = 64/98 (65%) Query: 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDKKSRDQ 66 +I I L+ FD + LD+S ++IV ++SG+Q+ GPIP P +RRFTV R P K SR+ Sbjct: 3 KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREH 62 Query: 67 LEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104 E+R + RL+ II P +T++ LM LD+ GV + IK Sbjct: 63 FELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKT 100 >3jyv_J 40S ribosomal protein S20; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_J Length = 96 Score = 104 bits (260), Expect = 7e-24 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD-KKSRD 65 +I I L + + L++ IV ++ GP+ P + + + ++P+ + K+ + Sbjct: 1 KIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWE 60 Query: 66 QLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVI 102 EMRI+KR + + P Q V + ++ I GV+V + Sbjct: 61 TYEMRIHKRYIDLEAPV-QIVKRITQITIEPGVDVEV 96 >2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 119 Score = 100 bits (251), Expect = 8e-23 Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 2/99 (2%) Query: 7 RICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD-KKSRD 65 RI I L + + + L+ +++ K+ ++ GP+ P R T ++P + K+ D Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78 Query: 66 QLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104 + +MRI+KRL+ + P+ + V + + I GV V + + Sbjct: 79 RFQMRIHKRLIDLHSPS-EIVKQITSISIEPGVEVEVTI 116 >3d3b_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermination; HET: NHE; 1.30A {Escherichia coli K12} PDB: 3imq_J 3d3c_J Length = 87 Score = 88.6 bits (220), Expect = 3e-19 Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 23/104 (22%) Query: 1 MTSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD 60 M ++ IRI LKAFD R++D + EIV T K++G+Q+ GPIP P Sbjct: 6 MQNQRIRIR--LKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT-------------- 49 Query: 61 KKSRDQLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104 R + RL+ I++PT +TVDALM+LD+AAGV+V I L Sbjct: 50 -------RSRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL 86 >3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination, RRN antitermination; 2.60A {Escherichia coli K12} PDB: 2kvq_E 3d3b_J* 3imq_J Length = 87 Score = 88.2 bits (219), Expect = 4e-19 Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 23/104 (22%) Query: 1 MTSRNIRICICLKAFDSRILDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD 60 M ++ IRI LKAFD R++D + EIV T K++G+Q+ GPIP P Sbjct: 6 MQNQRIRIR--LKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT-------------- 49 Query: 61 KKSRDQLEMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104 R + RL+ I++PT +TVD LM+LD+AAGV+V I L Sbjct: 50 -------RSRTHLRLVDIVEPTEKTVDDLMRLDLAAGVDVQISL 86 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.8 bits (90), Expect = 3e-04 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 39/108 (36%) Query: 16 DSRI---LDSSMREIVLTTKKSGSQIVGPIPFPRSIRRFTV-------------NRSPHV 59 ++ L + + +V++ GP P+S+ + +R P Sbjct: 363 GKQVEISLVNGAKNLVVS---------GP---PQSLYGLNLTLRKAKAPSGLDQSRIPFS 410 Query: 60 DKKSRDQLEMRIYKRLLYIIKP--TP--QTVDALMKLDIAAGVNVVIK 103 ++K + R L + P + L+ D+ NV Sbjct: 411 ERKL------KFSNRFLPVASPFHSHLLVPASDLINKDLVK-NNVSFN 451 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, structural genomics; HET: CIT; 2.10A {Babesia bovis} Length = 379 Score = 30.3 bits (68), Expect = 0.098 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 11 CLKAFDSRILDSS------MREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD 60 K FD+ ++++ R I+ TTK G I G I F ++ + N VD Sbjct: 58 IQKRFDNVGVENTEKNRAEYRSILFTTKGLGKYISGCILFEETLFQQAPNGQNMVD 113 >2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structural genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A Length = 369 Score = 29.2 bits (65), Expect = 0.20 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 11 CLKAFDSRILDSS------MREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDK 61 K FD+ L+++ R+++ TK G I G I F ++ + P V+ Sbjct: 46 IKKRFDNIKLENTIENRASYRDLLFGTKGLGKFISGAILFEETLFQKNEAGVPMVNL 102 >3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base, structural genomics; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* Length = 342 Score = 28.8 bits (64), Expect = 0.31 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 13 KAFDSRILDSS------MREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVD 60 + F+ + ++ REI+ +TK I G I + + + + P + Sbjct: 40 RRFEKLGITNTEENRRKFREILFSTKGIERYIGGVILNQETFEQTSGSGVPLTE 93 >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 1fcj_A* 1oas_A* 1d6s_A* Length = 316 Score = 28.0 bits (61), Expect = 0.58 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%) Query: 69 MRIYKRLLYIIKPTPQTVDALMKLD-IAAGVNVVIKL 104 M IY Y I TP L++L NVV+K+ Sbjct: 1 MAIYADNSYSIGNTP-----LVRLKHFGHNGNVVVKI 32 >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Length = 153 Score = 27.1 bits (60), Expect = 0.90 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Query: 68 EMRIYK--RLLYIIKPTPQTVDALMKLDIAAGVNVVIK 103 M IY+ L+Y I+P + +LM++ A G ++IK Sbjct: 83 RMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIK 120 >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* Length = 313 Score = 27.1 bits (59), Expect = 1.1 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 68 EMRIYKRLLYIIKPTPQTVDALMKLDIAAGVNVVIKL 104 M I + + +I TP + L ++ A ++V KL Sbjct: 3 HMSIAEDITQLIGRTP--LVRLRRVTDGAVADIVAKL 37 >2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A Length = 391 Score = 25.7 bits (56), Expect = 2.2 Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 8/73 (10%) Query: 11 CLKAFDSRILDSS------MREIVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDK--K 62 C K F L ++ R ++L + I G I ++ + N + Sbjct: 69 CTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTA 128 Query: 63 SRDQLEMRIYKRL 75 ++ L Sbjct: 129 RGVVPGIKTDMGL 141 >3hhc_A Interleukin-28B; interferon, IL-22, antiviral, antiviral defense, cytokine, secreted; 2.80A {Homo sapiens} Length = 196 Score = 24.0 bits (52), Expect = 7.9 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 27 IVLTTKKSGSQIVGPIPFPRSIRRFTVNRSPHVDK-KSRDQLEMRIYKRL 75 VL + + G +P R R H+ + KS E++ +KR Sbjct: 7 PVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSLSPQELQAFKRA 56 >1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Score = 23.9 bits (51), Expect = 9.9 Identities = 4/16 (25%), Positives = 10/16 (62%) Query: 76 LYIIKPTPQTVDALMK 91 +Y + PT + +D ++ Sbjct: 104 IYFVSPTKENIDIIVN 119 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.139 0.393 Gapped Lambda K H 0.267 0.0679 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 867,019 Number of extensions: 35484 Number of successful extensions: 129 Number of sequences better than 10.0: 1 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 26 Length of query: 104 Length of database: 5,693,230 Length adjustment: 69 Effective length of query: 35 Effective length of database: 4,020,394 Effective search space: 140713790 Effective search space used: 140713790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 50 (23.1 bits)