HHsearch alignment for GI: 254780263 and conserved domain: COG3523

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].
Probab=91.37  E-value=0.17  Score=28.33  Aligned_cols=119  Identities=21%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             EEEEEECCCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCC----C--HHH
Q ss_conf             9999904689887899999987--644420013126868698629206378999821-990899984787----3--024
Q gi|254780263|r   14 GLSTIGHVDHGKTTLTAAITKY--YSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPG----H--ADY   84 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~--~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PG----H--~~f   84 (392)
T Consensus       127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~-------~~~~~~g-T~~-----cdwwf~deaVlIDtaGry~~q~s~~~  193 (1188)
T COG3523         127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGA-------LGLAGPG-TRN-----CDWWFTDEAVLIDTAGRYITQDSADE  193 (1188)
T ss_pred             CEEEECCCCCCCCHHHHCCCCCCCCHHHHCC-------CCCCCCC-CCC-----CCCCCCCCEEEECCCCCEECCCCCCH
T ss_conf             0588548889840087515536661555331-------2226888-733-----57542553489858752443667502


Q ss_pred             HHH-----------HHHHHHCCCCEEEEECCCC--CCCCCHHHH-HHH--------HHHCC--CCCEEEEECCCCCCC-C
Q ss_conf             677-----------9877400233145201234--433210677-888--------86318--760233100233356-1
Q gi|254780263|r   85 VKN-----------MITGATQADGAILVCAAED--GPKPQTREH-ILL--------ARQIG--ISSIVVYMNKVDAVD-D  139 (392)
Q Consensus        85 ~~~-----------mi~g~~~~D~ailvVda~~--G~~~QT~eh-~~l--------~~~lg--i~~iIv~iNKmD~v~-~  139 (392)
T Consensus       194 ~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~P-VYl~lTk~Dll~GF  272 (1188)
T COG3523         194 VDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLP-VYLVLTKADLLPGF  272 (1188)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCH
T ss_conf             34888999888999735578886379997899973899999999999999999999984156776-38998621002157


Q ss_pred             HHHHHHC
Q ss_conf             2221101
Q gi|254780263|r  140 DELLDIS  146 (392)
Q Consensus       140 ~~~~~~i  146 (392)
T Consensus       273 ~efF~~l  279 (1188)
T COG3523         273 EEFFGSL  279 (1188)
T ss_pred             HHHHHCC
T ss_conf             9987333