HHsearch alignment for GI: 254780263 and conserved domain: KOG0078

Probab=97.64  E-value=0.00017  Score=46.94  Aligned_cols=143  Identities=20%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEE--EEEEECCCCHHHHHHH
Q ss_conf             82799999046898878999999876444200131268686986292063789998219908--9998478730246779
Q gi|254780263|r   11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRF--YSHIDCPGHADYVKNM   88 (392)
Q Consensus        11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~--i~iiD~PGH~~f~~~m   88 (392)
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~----~f~---~~~-----~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf-~ti   77 (207)
T KOG0078          11 YLFKLLLIGDSGVGKTCLLLRFSDD----SFN---TSF-----ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERF-RTI   77 (207)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHC----CCC---CCC-----CCEEEEEEEEEEEEECCEEEEEEEEECCCCHHH-HHH
T ss_conf             1899999778987655766654406----676---776-----515878878889983890899999972430567-889


Q ss_pred             HHHH-HCCCCEEEEECCCCCCCCCHHHHHHH-------HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE
Q ss_conf             8774-00233145201234433210677888-------863187602331002333561222110123210011101453
Q gi|254780263|r   89 ITGA-TQADGAILVCAAEDGPKPQTREHILL-------ARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS  160 (392)
Q Consensus        89 i~g~-~~~D~ailvVda~~G~~~QT~eh~~l-------~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~  160 (392)
T Consensus        78 ~~sYyrgA~gi~LvyDitne---~Sfeni~~W~~~I~e~a~~~v~~-~LvGNK~D~~~~--R-~V~~e~ge~lA~e~---  147 (207)
T KOG0078          78 TTAYYRGAMGILLVYDITNE---KSFENIRNWIKNIDEHASDDVVK-ILVGNKCDLEEK--R-QVSKERGEALAREY---  147 (207)
T ss_pred             HHHHHHHCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCC--C-CCCHHHHHHHHHHH---
T ss_conf             99998654824999984525---77777999999998637888748-985114121013--3-35679999999984---


Q ss_pred             EEEECCCCEEEEEEECC
Q ss_conf             22102331146764114
Q gi|254780263|r  161 DDTPIIRGSALCALQGT  177 (392)
Q Consensus       161 ~~~pii~~sa~~g~~~~  177 (392)
T Consensus       148 -G~~F~EtSAk~~~NI~  163 (207)
T KOG0078         148 -GIKFFETSAKTNFNIE  163 (207)
T ss_pred             -CCEEEECCCCCCCCHH
T ss_conf             -9827971336799889