HHsearch alignment for GI: 254780263 and conserved domain: PRK04000
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated.
Probab=100.00 E-value=0 Score=608.19 Aligned_cols=354 Identities=32% Similarity=0.488 Sum_probs=309.8
Q ss_pred HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC----------------
Q ss_conf 4210388279999904689887899999987644420013126868698629206378999821----------------
Q gi|254780263|r 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET---------------- 68 (392)
Q Consensus 5 ~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~---------------- 68 (392)
T Consensus 1 ~~~~~~p~vNIgtiGHVDHGKTTLv~aLTg~---------~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~ 71 (410)
T PRK04000 1 MWEFVQPEVNIGMVGHVDHGKTTLVQALTGV---------WTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEP 71 (410)
T ss_pred CCCCCCCCCEEEEEEEECCCHHHHHHHHHCC---------CCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEEC
T ss_conf 9877899526999965178699999887397---------5423887886488121051010012054555444135302
Q ss_pred ----------CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf ----------9908999847873024677987740023314520123443-32106778888631876023310023335
Q gi|254780263|r 69 ----------DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGP-KPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 69 ----------~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
T Consensus 72 ~~~~~~~~~~~~r~is~VD~PGHe~fi~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv 151 (410)
T PRK04000 72 TCPKCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 151 (410)
T ss_pred CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 33444555443316999979887999999984021266799998657787677149999999980998379999625678
Q ss_pred CCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 61222110123210011101453221023311467641144456521233203443102522221000011000000013
Q gi|254780263|r 138 DDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCG 217 (392)
Q Consensus 138 ~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~ 217 (392)
T Consensus 152 ~~e~~~~-~~~ei~~~l~g~~-~~~~piipvSa~~g~----------~i~~L~~~l~~~~~~p~r~~~~~f~m~Vdr~F~ 219 (410)
T PRK04000 152 SKEKALE-NYEQIKEFVKGTV-AENAPIIPVSALHGV----------NIDALIEAIEEEIPTPERDLDKPPLMYVARSFD 219 (410)
T ss_pred CHHHHHH-HHHHHHHHHCCCC-CCCCCEEEEECCCCC----------CCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE
T ss_conf 9899999-9999999870676-568999996477788----------940899989862778777888994489988885
Q ss_pred CCCCCC--------CEEEEEEECCCCCCCEEEEEECCC---------CCCCEEEECCCCCCCCCCCCCCCHHHHHHHC--
Q ss_conf 554454--------301487424534896799950687---------4321254121001211443210013666411--
Q gi|254780263|r 218 IEGRGT--------VVTGCIKRGRIKAGSDVEIIGMGG---------KKLKVKCTDVEMFRKKLDEAIAGDNVGLLLR-- 278 (392)
Q Consensus 218 i~g~G~--------Vv~GrV~sG~l~~Gd~i~i~p~~~---------~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lk-- 278 (392)
T Consensus 220 i~g~Gt~~~~~~G~VvtGtv~~G~ik~GD~vei~Pg~~~~~~~~~~~~pi~t~V~si~~~~~~~~~a~aG~~vai~~~ld 299 (410)
T PRK04000 220 VNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEKGGKTKWEPITTKITSLRAGGEKVEEARPGGLVGVGTKLD 299 (410)
T ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEHHEECCCCEEEECCCCC
T ss_conf 05798655356441788899762784299899944743345665311221269989974783911013676585223345
Q ss_pred -CCCCCEEECHHEEECCCCCCCC-EEEEEEEEEEECC----CCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCC
Q ss_conf -2454322021177326777630-0016899971056----787555511597899995414777999961895570789
Q gi|254780263|r 279 -GVNRADVPRGRVVCAPGSIQEY-SRFRASVYILTAS----EGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPG 352 (392)
Q Consensus 279 -gi~~~di~rGdvl~~~~~~~~~-~~f~A~i~il~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g 352 (392)
T Consensus 300 ~~i~r~D~~rG~Vl~~pg~l~p~~~~~~~~~~ll~~~~g~~~~~~~~plk~~~~~~~~~gTa~~~g~v~~~~~~------ 373 (410)
T PRK04000 300 PALTKADALAGSVAGKPGTLPPVWTSLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSAKKD------ 373 (410)
T ss_pred CCCCHHHHHCCCEEECCCCCCCCEEEEEEEEEEEHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCC------
T ss_conf 55335574156554359976874169999999980112653346667765796489998116278999977898------
Q ss_pred CEEEEEEEECCCEEECCCCEEEE--EECCE--EEEEEEEE
Q ss_conf 76999999778177546984999--98996--99989995
Q gi|254780263|r 353 DRVDLEVELIYPIAMEPNQTFSM--REGGK--TVGAGLIL 388 (392)
Q Consensus 353 ~~~~v~l~l~~pi~~e~~~rfil--Rd~~~--tig~G~I~ 388 (392)
T Consensus 374 ---~~~l~L~~Pv~~~~g~Rf~i~rr~~~r~rtIG~G~i~ 410 (410)
T PRK04000 374 ---EAEVKLKRPVCAEEGSRVAISRRVGGRWRLIGYGIIK 410 (410)
T ss_pred ---EEEEEECCCEECCCCCEEEEEEECCCCEEEEEEEEEC
T ss_conf ---7999969436368899899998359953787258969