HHsearch alignment for GI: 254780263 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.56  E-value=0.00098  Score=42.23  Aligned_cols=122  Identities=22%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHH-HHH---CCCCCCCC---HHHHH--C----CCEEEEEEEE-------EECCCEEE
Q ss_conf             9999904689887899999987644-420---01312686---86986--2----9206378999-------82199089
Q gi|254780263|r   14 GLSTIGHVDHGKTTLTAAITKYYSE-EKK---EYGDIDSA---PEEKL--R----GITIATAHVS-------YETDKRFY   73 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~-~~~---~~~~~D~~---~~E~~--r----GiTi~~~~~~-------~~~~~~~i   73 (392)
T Consensus       178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dl  257 (404)
T PRK06995        178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHI  257 (404)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf             58986688876375899999999998389837999768754789999999998759559995999999999997089999


Q ss_pred             EEEECCC--CHHH--HH--HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             9984787--3024--67--7987740023314520123443321067788886318760233100233356
Q gi|254780263|r   74 SHIDCPG--HADY--VK--NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD  138 (392)
Q Consensus        74 ~iiD~PG--H~~f--~~--~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~  138 (392)
T Consensus       258 ILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~d-l~~i~~~f~~~~~~~~I--~TKLDEt~  325 (404)
T PRK06995        258 VLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDT-LNEVVQAYRGPGLAGCI--LTKLDEAA  325 (404)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHHCCCCCCEEE--EECCCCCC
T ss_conf             9980999897688899999999735788528999779899999-99999984469998399--83040679