HHsearch alignment for GI: 254780263 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.56 E-value=0.00098 Score=42.23 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=69.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-HHH---CCCCCCCC---HHHHH--C----CCEEEEEEEE-------EECCCEEE
Q ss_conf 9999904689887899999987644-420---01312686---86986--2----9206378999-------82199089
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE-EKK---EYGDIDSA---PEEKL--R----GITIATAHVS-------YETDKRFY 73 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~-~~~---~~~~~D~~---~~E~~--r----GiTi~~~~~~-------~~~~~~~i 73 (392)
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dl 257 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHI 257 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 58986688876375899999999998389837999768754789999999998759559995999999999997089999
Q ss_pred EEEECCC--CHHH--HH--HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9984787--3024--67--7987740023314520123443321067788886318760233100233356
Q gi|254780263|r 74 SHIDCPG--HADY--VK--NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 74 ~iiD~PG--H~~f--~~--~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
T Consensus 258 ILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~d-l~~i~~~f~~~~~~~~I--~TKLDEt~ 325 (404)
T PRK06995 258 VLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDT-LNEVVQAYRGPGLAGCI--LTKLDEAA 325 (404)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHHCCCCCCEEE--EECCCCCC
T ss_conf 9980999897688899999999735788528999779899999-99999984469998399--83040679