HHsearch alignment for GI: 254780263 and conserved domain: PRK10512
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional.
Probab=100.00 E-value=0 Score=601.76 Aligned_cols=335 Identities=27% Similarity=0.407 Sum_probs=301.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219-90899984787302467798774
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-KRFYSHIDCPGHADYVKNMITGA 92 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~iiD~PGH~~f~~~mi~g~ 92 (392)
T Consensus 2 IigTAGHVDHGKTsLvkALTG~---------dtDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPGHErFIknMlAG~ 72 (615)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV---------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGV 72 (615)
T ss_pred EEEEECCCCCCHHHHHHHHHCC---------CCCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 8996365477899999998688---------8656977897187277130755579997899987998389999997446
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEE
Q ss_conf 00233145201234433210677888863187602331002333561222110123210011101453221023311467
Q gi|254780263|r 93 TQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALC 172 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~ 172 (392)
T Consensus 73 ~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e-~l~~v~~ei~~~l~~t~-l~~~pi~~vSa~t 150 (615)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA-RIDEVRRQVLEVLREYG-FAEAKLFVTAATE 150 (615)
T ss_pred HHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHH-HHHHHHHHHHHHHHCCC-CCCCCEEECCCCC
T ss_conf 437889999988998772379999999981998289999776568979-99999999999984478-7679752014566
Q ss_pred EEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCE
Q ss_conf 64114445652123320344310252222100001100000001355445430148742453489679995068743212
Q gi|254780263|r 173 ALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKV 252 (392)
Q Consensus 173 g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~ 252 (392)
T Consensus 151 g----------~Gi~~L~~~L~~l~-~~~~~~~~~fRL~IDRvFsvkG~GTVVTGTl~sG~v~~GD~l~i~P~~---~~~ 216 (615)
T PRK10512 151 G----------RGIDALREHLLQLP-EREHASQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVN---KPM 216 (615)
T ss_pred C----------CCHHHHHHHHHHHC-CCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCC---CEE
T ss_conf 6----------79999999998625-566676776178831189626885699999814714269989986999---679
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHCC-CCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf 541210012114432100136664112-4543220211773267776300016899971056787555511597899995
Q gi|254780263|r 253 KCTDVEMFRKKLDEAIAGDNVGLLLRG-VNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFM 331 (392)
Q Consensus 253 kv~si~~~~~~v~~a~aGd~v~l~Lkg-i~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~ 331 (392)
T Consensus 217 rVR~iQ~h~~~v~~a~aG~R~AlNL~G~v~~~~i~RGd~L~~~~~~~~~~~~~v~l~---~-----~~~lk~~~~v~l~~ 288 (615)
T PRK10512 217 RVRALHAQNQPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVELQ---T-----HTPLTQWQPLHIHH 288 (615)
T ss_pred EEEEHHHCCCCCCEECCCCEEEEEECCCCCHHHCCCCCEEECCCCCCCEEEEEEEEC---C-----CCCCCCCCEEEEEE
T ss_conf 873477679815573277459996125446723178668923888775359999957---8-----99865893799996
Q ss_pred CCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEE--CCEEEEEEEEEEE
Q ss_conf 4147779999618955707897699999977817754698499998--9969998999553
Q gi|254780263|r 332 DTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMRE--GGKTVGAGLILEI 390 (392)
Q Consensus 332 ~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd--~~~tig~G~I~~v 390 (392)
T Consensus 289 Gt~~v~~rv~ll~~---------~~aqL~Le~pv~~~~GDRfIlR~~Sp~~TIGGG~VLd~ 340 (615)
T PRK10512 289 AASHVTGRVSLLED---------NLAELVFDTPLWLADNDRLVLRDISARNTLAGARVVML 340 (615)
T ss_pred CCCCEEEEEEECCC---------CEEEEEECCCEEEECCCEEEEECCCCCEEEEEEEEECC
T ss_conf 45102799995488---------46999978945455397689962888826762799688