HHsearch alignment for GI: 254780263 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.61 E-value=0.0006 Score=43.57 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=68.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCC------CCCCCC---HHHHH------CCCEEEEEEEEE-------ECCCEE
Q ss_conf 99990468988789999998764442001------312686---86986------292063789998-------219908
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEY------GDIDSA---PEEKL------RGITIATAHVSY-------ETDKRF 72 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~------~~~D~~---~~E~~------rGiTi~~~~~~~-------~~~~~~ 72 (392)
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D 256 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD 256 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC
T ss_conf 99989988757879999999999862676773799980787588999999999997880698578899999999724999
Q ss_pred EEEEECCC--CHH--HHHHHHHHHHC--CCC-EEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99984787--302--46779877400--233-14520123443321067788886318760233100233356
Q gi|254780263|r 73 YSHIDCPG--HAD--YVKNMITGATQ--ADG-AILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 73 i~iiD~PG--H~~--f~~~mi~g~~~--~D~-ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
T Consensus 257 ~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~-~i~~~f~~~~~~~~I--~TKlDEt~ 326 (388)
T PRK12723 257 LVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIK-EIFHQFSPFSYKTVI--FTKLDETT 326 (388)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH-HHHHHHCCCCCCEEE--EEECCCCC
T ss_conf 99995899885689999999999974189845999987989999999-999984279998499--98322789