HHsearch alignment for GI: 254780263 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.61  E-value=0.0006  Score=43.57  Aligned_cols=121  Identities=17%  Similarity=0.199  Sum_probs=68.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCC------CCCCCC---HHHHH------CCCEEEEEEEEE-------ECCCEE
Q ss_conf             99990468988789999998764442001------312686---86986------292063789998-------219908
Q gi|254780263|r   15 LSTIGHVDHGKTTLTAAITKYYSEEKKEY------GDIDSA---PEEKL------RGITIATAHVSY-------ETDKRF   72 (392)
Q Consensus        15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~------~~~D~~---~~E~~------rGiTi~~~~~~~-------~~~~~~   72 (392)
T Consensus       177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D  256 (388)
T PRK12723        177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD  256 (388)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC
T ss_conf             99989988757879999999999862676773799980787588999999999997880698578899999999724999


Q ss_pred             EEEEECCC--CHH--HHHHHHHHHHC--CCC-EEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             99984787--302--46779877400--233-14520123443321067788886318760233100233356
Q gi|254780263|r   73 YSHIDCPG--HAD--YVKNMITGATQ--ADG-AILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD  138 (392)
Q Consensus        73 i~iiD~PG--H~~--f~~~mi~g~~~--~D~-ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~  138 (392)
T Consensus       257 ~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~-~i~~~f~~~~~~~~I--~TKlDEt~  326 (388)
T PRK12723        257 LVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIK-EIFHQFSPFSYKTVI--FTKLDETT  326 (388)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH-HHHHHHCCCCCCEEE--EEECCCCC
T ss_conf             99995899885689999999999974189845999987989999999-999984279998499--98322789