HHsearch alignment for GI: 254780263 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.18  E-value=0.077  Score=30.49  Aligned_cols=118  Identities=19%  Similarity=0.240  Sum_probs=50.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHH-HHHCCCC--CCCC---HHHHH------CCCEEEEEEEE------EECCCEEEEEE
Q ss_conf             999904689887899999987644-4200131--2686---86986------29206378999------82199089998
Q gi|254780263|r   15 LSTIGHVDHGKTTLTAAITKYYSE-EKKEYGD--IDSA---PEEKL------RGITIATAHVS------YETDKRFYSHI   76 (392)
Q Consensus        15 i~~iGhvd~GKSTL~~~L~~~~~~-~~~~~~~--~D~~---~~E~~------rGiTi~~~~~~------~~~~~~~i~ii   76 (392)
T Consensus       226 i~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlILI  305 (432)
T PRK12724        226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILI  305 (432)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEEE
T ss_conf             99989999888999999999999974992799952665377999999999985994599518999999998569999999


Q ss_pred             ECCC--CHHH--H---HHHHHHHHCC--CCEEEEECCCCCCCCCHHHHHHHH---HHCCCCCEEEEECCCCCCC
Q ss_conf             4787--3024--6---7798774002--331452012344332106778888---6318760233100233356
Q gi|254780263|r   77 DCPG--HADY--V---KNMITGATQA--DGAILVCAAEDGPKPQTREHILLA---RQIGISSIVVYMNKVDAVD  138 (392)
Q Consensus        77 D~PG--H~~f--~---~~mi~g~~~~--D~ailvVda~~G~~~QT~eh~~l~---~~lgi~~iIv~iNKmD~v~  138 (392)
T Consensus       306 DTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~----dl~~ii~~f~~l~~~~lI--fTKLDET~  373 (432)
T PRK12724        306 DTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH----HTLTVLKAYESLNYRRIL--LTKLDEAD  373 (432)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH----HHHHHHHHHCCCCCCEEE--EEECCCCC
T ss_conf             299989789999999999998636678851799997889989----999999984269998499--97122779