HHsearch alignment for GI: 254780263 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.18 E-value=0.077 Score=30.49 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=50.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-HHHCCCC--CCCC---HHHHH------CCCEEEEEEEE------EECCCEEEEEE
Q ss_conf 999904689887899999987644-4200131--2686---86986------29206378999------82199089998
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSE-EKKEYGD--IDSA---PEEKL------RGITIATAHVS------YETDKRFYSHI 76 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~-~~~~~~~--~D~~---~~E~~------rGiTi~~~~~~------~~~~~~~i~ii 76 (392)
T Consensus 226 i~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlILI 305 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILI 305 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEEE
T ss_conf 99989999888999999999999974992799952665377999999999985994599518999999998569999999
Q ss_pred ECCC--CHHH--H---HHHHHHHHCC--CCEEEEECCCCCCCCCHHHHHHHH---HHCCCCCEEEEECCCCCCC
Q ss_conf 4787--3024--6---7798774002--331452012344332106778888---6318760233100233356
Q gi|254780263|r 77 DCPG--HADY--V---KNMITGATQA--DGAILVCAAEDGPKPQTREHILLA---RQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 77 D~PG--H~~f--~---~~mi~g~~~~--D~ailvVda~~G~~~QT~eh~~l~---~~lgi~~iIv~iNKmD~v~ 138 (392)
T Consensus 306 DTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~----dl~~ii~~f~~l~~~~lI--fTKLDET~ 373 (432)
T PRK12724 306 DTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH----HTLTVLKAYESLNYRRIL--LTKLDEAD 373 (432)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH----HHHHHHHHHCCCCCCEEE--EEECCCCC
T ss_conf 299989789999999999998636678851799997889989----999999984269998499--97122779