HHsearch alignment for GI: 254780263 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=96.71 E-value=0.0069 Score=36.97 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=63.2
Q ss_pred EEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCCCC--------CHHH-HHCCCEEEE---EE-----------EEEECCC
Q ss_conf 9999-046898878999999876444200131268--------6869-862920637---89-----------9982199
Q gi|254780263|r 15 LSTI-GHVDHGKTTLTAAITKYYSEEKKEYGDIDS--------APEE-KLRGITIAT---AH-----------VSYETDK 70 (392)
Q Consensus 15 i~~i-Ghvd~GKSTL~~~L~~~~~~~~~~~~~~D~--------~~~E-~~rGiTi~~---~~-----------~~~~~~~ 70 (392)
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~~~ 83 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQG 83 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHCC
T ss_conf 99961899876999999999999978995999968998688999987652589887752340565257899998875369
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH------HHHCCCCCEEEEECCCCC
Q ss_conf 089998478730246779877400233145201234433210677888------863187602331002333
Q gi|254780263|r 71 RFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILL------ARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 71 ~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l------~~~lgi~~iIv~iNKmD~ 136 (392)
T Consensus 84 ~D~VIIDtpg~~s~~--~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~~-vlltRv~a 152 (231)
T PRK13849 84 FDYALADTHGGSSEL--NNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTA-ILRQRVPV 152 (231)
T ss_pred CCEEEECCCCCCCHH--HHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECCH
T ss_conf 988998189977589--9999997898997799986679999999999999999728788656-66540504