HHsearch alignment for GI: 254780263 and conserved domain: TIGR00436
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=97.27 E-value=0.00096 Score=42.29 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=85.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEE-EEEEECCC-CHH--------
Q ss_conf 99999046898878999999876444200131268686986292063789998219908-99984787-302--------
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRF-YSHIDCPG-HAD-------- 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~-i~iiD~PG-H~~-------- 83 (392)
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~d~pg~~~~~~~~~~~~ 70 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSP---KPQTTRNRISGI--------LTTGASQNIIFIDTPGFHEPEKHKLGEL 70 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCC---CCHHHHHHHHEE--------EECCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 11211577653366777663241010023---101234332001--------2236655157862587651245677888
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC-CCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 467798774002331452012344332106778888631876023310023335-6122211012321001110145322
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV-DDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v-~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~ 144 (278)
T TIGR00436 71 LNKEARSALGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRP-VLLTLNKLDNKNFPDKLLPLL----DKYAGLEDFK-P 144 (278)
T ss_pred HHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCH-HHHHHHHHHHCCHHHHHHHHH----HHHHHHHCCC-C
T ss_conf 888887531232268898633445564046889876520210-100122333101035677777----6665542046-7
Q ss_pred EECCCCEEEEEE
Q ss_conf 102331146764
Q gi|254780263|r 163 TPIIRGSALCAL 174 (392)
Q Consensus 163 ~pii~~sa~~g~ 174 (392)
T Consensus 145 ~~~~~~~~~~~~ 156 (278)
T TIGR00436 145 WPIVPISALKGD 156 (278)
T ss_pred CCEEEHHHHHHC
T ss_conf 520110112100