HHsearch alignment for GI: 254780263 and conserved domain: TIGR00485
>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=574.45 Aligned_cols=389 Identities=59% Similarity=0.974 Sum_probs=368.5
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 9612421038827999990468988789999998764442----001312686869862920637899982199089998
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHI 76 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ii 76 (392)
T Consensus 1 ~~~~~f~r~k~h~n~GtiGhvdhGkttl~aa~~~~l~~~~~~~~~~y~~id~aPee~~rGiti~~~~vey~~~~rhyahv 80 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGKAAAKKYDEIDKAPEEKARGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CCCHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEEECCCCCCEEEE
T ss_conf 96001011467033301210015505789999999875100356767765237211334515653355421467515763
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 47873024677987740023314520123443321067788886318760233100233356122211012321001110
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
T Consensus 81 dCPGhadyvknmitGaaqmdGailvv~~~d~~mPqt~ehill~~~vGvP~~vvflnk~d~~~~~el~~lv~~e~~~ll~~ 160 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPKIVVFLNKVDMVDDEELLELVELEVRELLSE 160 (394)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 18862678887641011117607999527888874112100100268765787640233224278999999999999874
Q ss_pred EEEEE-EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 14532-21023311467641144456521233203443102522221000011000000013554454301487424534
Q gi|254780263|r 157 HKYSD-DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235 (392)
Q Consensus 157 ~~~~~-~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~ 235 (392)
T Consensus 161 ~~f~G~~~Pi~~Gsal~al~~~~--~~~~~~~~l~~~vd~~i~~P~r~~~~~fl~~~ed~~~i~GrGtv~tGr~e~G~~~ 238 (394)
T TIGR00485 161 YDFPGDDVPIVRGSALKALEGDA--EWEEKILELMEAVDEYIPTPEREVDKPFLLPIEDVFSITGRGTVVTGRVERGVVK 238 (394)
T ss_pred CCCCCCCCCEEECHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEEEECCCEEEEEEEEECEEE
T ss_conf 07898652256114565420036--7999999999999865067511314411455310467504634785024304476
Q ss_pred CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 89679995068743212541210012114432100136664112454322021177326777630001689997105678
Q gi|254780263|r 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEG 315 (392)
Q Consensus 236 ~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~ 315 (392)
T Consensus 239 v~~~v~~~G~~~-~~~~~vtGvemf~k~l~~~~aG~n~G~llrG~~~~~~~rG~v~~~P~~~~~~~~f~~~~y~l~k~eG 317 (394)
T TIGR00485 239 VGEEVEIVGLKD-TKKTTVTGVEMFRKELDEGEAGDNVGLLLRGIKKEEIERGMVLAKPGSIKPHKKFEAEVYVLKKEEG 317 (394)
T ss_pred ECCEEEEEEEEC-CCCEEEHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCEEEECCCCCCCCCCCCEEEEEEECCCC
T ss_conf 446479987402-4540221478888874113355420101104531210156378437632300012048999961688
Q ss_pred CCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 75555115978999954147779999618955707897699999977817754698499998996999899955319
Q gi|254780263|r 316 GRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~~v~e 392 (392)
T Consensus 318 Grh~~f~~~yrPqfy~rt~dvtG~~~~~~~~~mv~PGd~~~~~~~li~~~a~~~G~~f~~reGG~tvGaG~v~~~~~ 394 (394)
T TIGR00485 318 GRHTPFFSGYRPQFYLRTTDVTGKIELPEGVEMVMPGDNVKLTVELISPVALEEGLRFAIREGGRTVGAGVVSKILE 394 (394)
T ss_pred CCCCHHHHCCCCEEEEEEECEEEEEEECCCCEEEECCCCEEEEEEEEEEEHHCCCCEEEEECCCCEECCHHHHHHCC
T ss_conf 73003342278505788511035775213515761587258999774120002586666413871321106776509