HHsearch alignment for GI: 254780263 and conserved domain: TIGR00491

>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.95  E-value=2.6e-28  Score=194.63  Aligned_cols=224  Identities=26%  Similarity=0.291  Sum_probs=157.4

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-----------CEE------
Q ss_conf             882799999046898878999999876444200131268686986292063789998219-----------908------
Q gi|254780263|r   10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-----------KRF------   72 (392)
Q Consensus        10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-----------~~~------   72 (392)
T Consensus       549 tethnfianGivvh-nTTLLDkI-Rks~Vv~kEAG-----------giTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iP  615 (1145)
T TIGR00491       549 TETHNFIANGIVVH-NTTLLDKI-RKSAVVKKEAG-----------GITQHIGASEVPLDVIKKICGDLLKKFKIKLKIP  615 (1145)
T ss_pred             CCHHHHHHCCEEEE-CCCCCCCC-CCCCEEEECCC-----------CCCEECCCEECCHHHHHHHCHHHHHCEEEEEECC
T ss_conf             00012322664785-14331000-33401324778-----------8401006665466898651321211402578658


Q ss_pred             -EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC-CH--H-------
Q ss_conf             -999847873024677987740023314520123443321067788886318760233100233356-12--2-------
Q gi|254780263|r   73 -YSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD-DD--E-------  141 (392)
Q Consensus        73 -i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~-~~--~-------  141 (392)
T Consensus       616 GLLfIDTPGHeaFt~LRkRGGAlADlAILvVDInEGfkpQT~EA~~ILr~~ktP-FvVAANKIDrI~GW~~~e~~~fl~~  694 (1145)
T TIGR00491       616 GLLFIDTPGHEAFTNLRKRGGALADLAILVVDINEGFKPQTEEALNILRSFKTP-FVVAANKIDRIPGWKSHEGRPFLES  694 (1145)
T ss_pred             EEEEEECCCCHHHHCCCCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf             015860786234422010010363011013410269840348999996128987-2895033055889645488516666


Q ss_pred             -----------HHHHCCCCCCE-EEEEEEEEE-----------EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC---
Q ss_conf             -----------21101232100-111014532-----------2102331146764114445652123320344310---
Q gi|254780263|r  142 -----------LLDISEYEIRD-LLKEHKYSD-----------DTPIIRGSALCALQGTNKELGEDSIHALMKAVDT---  195 (392)
Q Consensus       142 -----------~~~~i~~~i~~-~l~~~~~~~-----------~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~---  195 (392)
T Consensus       695 ~~kq~~~~~~~l~~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tG----------EGIpelL~~l~GLAQ  764 (1145)
T TIGR00491       695 YEKQEQRVKQNLDKKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTG----------EGIPELLLILAGLAQ  764 (1145)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCC----------CCHHHHHHHHHHHHH
T ss_conf             5411167886688778988730221125887122552000011368988665678----------974899999988888


Q ss_pred             -CCCCCC-CCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCC
Q ss_conf             -252222-100001100000001355445430148742453489679995068743212541210
Q gi|254780263|r  196 -HIPTPQ-RSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVE  258 (392)
Q Consensus       196 -~~~~p~-~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~  258 (392)
T Consensus       765 ~YL~~~Lkl~~eG~AkGtiLEVKEe~GLG~T~DaviYdGilk~~D~iv~~~~d~-vivT~vkAlL  828 (1145)
T TIGR00491       765 KYLEEKLKLEVEGPAKGTILEVKEEKGLGVTIDAVIYDGILKKGDIIVLAGKDD-VIVTRVKALL  828 (1145)
T ss_pred             HHHHHHCCEEECCCCCEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCCC-CEEEEEEEEC
T ss_conf             998852674222786515898785068971699999557712078899813898-0576678634