HHsearch alignment for GI: 254780263 and conserved domain: cd01873

>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.96  E-value=0.0018  Score=40.62  Aligned_cols=115  Identities=14%  Similarity=0.096  Sum_probs=61.6

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHH-HHHHHHHHCC-CC------CCCCHHHHHCCCEEEEE---EEEEECCCEEEEEEECC
Q ss_conf             82799999046898878999999-8764442001-31------26868698629206378---99982199089998478
Q gi|254780263|r   11 ESLGLSTIGHVDHGKTTLTAAIT-KYYSEEKKEY-GD------IDSAPEEKLRGITIATA---HVSYETDKRFYSHIDCP   79 (392)
Q Consensus        11 ~~~ni~~iGhvd~GKSTL~~~L~-~~~~~~~~~~-~~------~D~~~~E~~rGiTi~~~---~~~~~~~~~~i~iiD~P   79 (392)
T Consensus         1 ~t~KiVlvGDs~VGKTsLl~~~~~n~~~~~~~~~~~~~pTv~~~~~~------~~~~~~~~~~~~~vdg~~v~L~iWDTA   74 (195)
T cd01873           1 ETIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQY------RVCQEVLERSRDVVDGVSVSLRLWDTF   74 (195)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------EEEEEECCCCEEEECCEEEEEEEEECC
T ss_conf             97799998789989899997787478765565666758866333331------344443022114218959999999789


Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH------HHH-HHCCCCCEEEEECCCCCC
Q ss_conf             7302467798774002331452012344332106778------888-631876023310023335
Q gi|254780263|r   80 GHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI------LLA-RQIGISSIVVYMNKVDAV  137 (392)
Q Consensus        80 GH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~------~l~-~~lgi~~iIv~iNKmD~v  137 (392)
T Consensus        75 G~~~~~r~~~--y~~~~~~ll~fdv~~~---~Sf~~v~~~W~~ei~~~~~~~p-iiLVG~K~DLr  133 (195)
T cd01873          75 GDHDKDRRFA--YGRSDVVLLCFSIASP---NSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLR  133 (195)
T ss_pred             CCHHHCCCCC--CCCCCEEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHC
T ss_conf             9620012143--5688899999966980---1489999999999998689998-89996375754