HHsearch alignment for GI: 254780263 and conserved domain: cd01873
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.96 E-value=0.0018 Score=40.62 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=61.6
Q ss_pred CEEEEEEEECCCCCHHHHHHHHH-HHHHHHHHCC-CC------CCCCHHHHHCCCEEEEE---EEEEECCCEEEEEEECC
Q ss_conf 82799999046898878999999-8764442001-31------26868698629206378---99982199089998478
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAIT-KYYSEEKKEY-GD------IDSAPEEKLRGITIATA---HVSYETDKRFYSHIDCP 79 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~-~~~~~~~~~~-~~------~D~~~~E~~rGiTi~~~---~~~~~~~~~~i~iiD~P 79 (392)
T Consensus 1 ~t~KiVlvGDs~VGKTsLl~~~~~n~~~~~~~~~~~~~pTv~~~~~~------~~~~~~~~~~~~~vdg~~v~L~iWDTA 74 (195)
T cd01873 1 ETIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQY------RVCQEVLERSRDVVDGVSVSLRLWDTF 74 (195)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------EEEEEECCCCEEEECCEEEEEEEEECC
T ss_conf 97799998789989899997787478765565666758866333331------344443022114218959999999789
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH------HHH-HHCCCCCEEEEECCCCCC
Q ss_conf 7302467798774002331452012344332106778------888-631876023310023335
Q gi|254780263|r 80 GHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI------LLA-RQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 80 GH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~------~l~-~~lgi~~iIv~iNKmD~v 137 (392)
T Consensus 75 G~~~~~r~~~--y~~~~~~ll~fdv~~~---~Sf~~v~~~W~~ei~~~~~~~p-iiLVG~K~DLr 133 (195)
T cd01873 75 GDHDKDRRFA--YGRSDVVLLCFSIASP---NSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLR 133 (195)
T ss_pred CCHHHCCCCC--CCCCCEEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHC
T ss_conf 9620012143--5688899999966980---1489999999999998689998-89996375754