HHsearch alignment for GI: 254780263 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.63 E-value=1.6e-15 Score=115.25 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=93.5
Q ss_pred CCCCEE-EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCC-CHHH
Q ss_conf 038827-9999904689887899999987644420013126868698629206378999821-990899984787-3024
Q gi|254780263|r 8 RNKESL-GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPG-HADY 84 (392)
Q Consensus 8 ~~k~~~-ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PG-H~~f 84 (392)
T Consensus 36 r~~~g~p~VaivG~PNvGKSTLlN~L~g~~~~v------~~------~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~ 103 (204)
T cd01878 36 RKRSGIPTVALVGYTNAGKSTLFNALTGADVYA------ED------QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL 103 (204)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE------EC------CCCCCCCCEEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 774599879998899998999999994899634------15------677645763668995699779998368644678
Q ss_pred H-------HHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCC--CCEEEEECCCCCCCCHHHHHHCCCCCCEEE
Q ss_conf 6-------77987740023314520123443-3210677888863187--602331002333561222110123210011
Q gi|254780263|r 85 V-------KNMITGATQADGAILVCAAEDGP-KPQTREHILLARQIGI--SSIVVYMNKVDAVDDDELLDISEYEIRDLL 154 (392)
Q Consensus 85 ~-------~~mi~g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~lgi--~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l 154 (392)
T Consensus 104 p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~~~~-------- 175 (204)
T cd01878 104 PHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERL-------- 175 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH--------
T ss_conf 378999999999999739899999979985366779999999998065557607888670479957589999--------
Q ss_pred EEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 10145322102331146764114445652123320344310
Q gi|254780263|r 155 KEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 155 ~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 176 ~~----~~~~~i~ISA~~g~----------Gid~L~~~I~e 202 (204)
T cd01878 176 EA----GRPDAVFISAKTGE----------GLDELLEAIEE 202 (204)
T ss_pred HH----CCCCEEEEECCCCC----------CHHHHHHHHHH
T ss_conf 70----89987999886894----------99999999995