HHsearch alignment for GI: 254780263 and conserved domain: cd01879

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.63  E-value=6.1e-16  Score=117.90  Aligned_cols=146  Identities=21%  Similarity=0.316  Sum_probs=92.8

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHH---------HHH
Q ss_conf             99046898878999999876444200131268686986292063789998219908999847873024---------677
Q gi|254780263|r   17 TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADY---------VKN   87 (392)
Q Consensus        17 ~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f---------~~~   87 (392)
T Consensus         1 ivG~pNvGKSTL~N~L~g~~~~-------vs~-----~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~i~~~   68 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQK-------VGN-----WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARD   68 (158)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCE-------ECC-----CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             9798988899999999599864-------617-----8982763478899629937999979874125641356789999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf             98774002331452012344332106778888631876023310023335612221101232100111014532210233
Q gi|254780263|r   88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR  167 (392)
Q Consensus        88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~  167 (392)
T Consensus        69 ~~~~-~~~d~vl~vvD~~~-~~-~~l~~~~~l~~~~~p-~ivV~NK~D~~~~~~~~~~~-~~l~~~~-------~~~ii~  136 (158)
T cd01879          69 FLLG-EKPDLIVNVVDATN-LE-RNLYLTLQLLELGLP-VVVALNMIDEAEKRGIKIDL-DKLSELL-------GVPVVP  136 (158)
T ss_pred             HHHH-CCCCCEEEEEECCH-HH-HHHHHHHHHHHCCCC-EEEEEEHHHHHHHCCCHHHH-HHHHHHC-------CCCEEE
T ss_conf             9985-17871799977740-67-768999999865998-89994027765522546679-9999871-------994899


Q ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf             11467641144456521233203443102
Q gi|254780263|r  168 GSALCALQGTNKELGEDSIHALMKAVDTH  196 (392)
Q Consensus       168 ~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~  196 (392)
T Consensus       137 iSA~~g~----------Gi~~L~~~i~el  155 (158)
T cd01879         137 TSARKGE----------GIDELKDAIAEL  155 (158)
T ss_pred             EECCCCC----------CHHHHHHHHHHH
T ss_conf             9877897----------999999999998