HHsearch alignment for GI: 254780263 and conserved domain: cd01887

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.97  E-value=3.5e-32  Score=218.63  Aligned_cols=157  Identities=33%  Similarity=0.439  Sum_probs=118.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEE---CCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             999990468988789999998764442001312686869862920637899982---19908999847873024677987
Q gi|254780263|r   14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYE---TDKRFYSHIDCPGHADYVKNMIT   90 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~---~~~~~i~iiD~PGH~~f~~~mi~   90 (392)
T Consensus         2 ~VaivG~~n~GKSTL~n~L~~~~------------~~~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~   69 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTN------------VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRAR   69 (168)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCC------------CCEEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHHHHHH
T ss_conf             89999489985989999985867------------504516981687153999988258871899989981677999999


Q ss_pred             HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEE--EEEEEEEEEECCCC
Q ss_conf             7400233145201234433210677888863187602331002333561222110123210011--10145322102331
Q gi|254780263|r   91 GATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLL--KEHKYSDDTPIIRG  168 (392)
Q Consensus        91 g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l--~~~~~~~~~pii~~  168 (392)
T Consensus        70 ~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p-~ivviNKiD~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~iIpv  146 (168)
T cd01887          70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNANP--ERVKNELSELGLQGEDEWGGDVQIVPT  146 (168)
T ss_pred             HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCH--HHHHHHHHHHHCCCHHHCCCCCEEEEE
T ss_conf             98626889999864667545899999999876997-899998930898798--999999999754524552898759999


Q ss_pred             EEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf             146764114445652123320344310
Q gi|254780263|r  169 SALCALQGTNKELGEDSIHALMKAVDT  195 (392)
Q Consensus       169 sa~~g~~~~n~~~~~~~~~~Ll~~i~~  195 (392)
T Consensus       147 SA~tG~----------gi~~L~~~i~~  163 (168)
T cd01887         147 SAKTGE----------GIDDLLEAILL  163 (168)
T ss_pred             ECCCCC----------CHHHHHHHHHH
T ss_conf             899998----------99999999999