HHsearch alignment for GI: 254780263 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.97 E-value=3.5e-32 Score=218.63 Aligned_cols=157 Identities=33% Similarity=0.439 Sum_probs=118.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEE---CCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899982---19908999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYE---TDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~---~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~------------~~~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN------------VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRAR 69 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCC------------CCEEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHHHHHH
T ss_conf 89999489985989999985867------------504516981687153999988258871899989981677999999
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEE--EEEEEEEEEECCCC
Q ss_conf 7400233145201234433210677888863187602331002333561222110123210011--10145322102331
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLL--KEHKYSDDTPIIRG 168 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l--~~~~~~~~~pii~~ 168 (392)
T Consensus 70 ~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p-~ivviNKiD~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~iIpv 146 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNANP--ERVKNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCH--HHHHHHHHHHHCCCHHHCCCCCEEEEE
T ss_conf 98626889999864667545899999999876997-899998930898798--999999999754524552898759999
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 146764114445652123320344310
Q gi|254780263|r 169 SALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 169 sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 147 SA~tG~----------gi~~L~~~i~~ 163 (168)
T cd01887 147 SAKTGE----------GIDDLLEAILL 163 (168)
T ss_pred ECCCCC----------CHHHHHHHHHH
T ss_conf 899998----------99999999999