HHsearch alignment for GI: 254780263 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.66 E-value=1.4e-07 Score=66.12 Aligned_cols=143 Identities=14% Similarity=0.039 Sum_probs=82.7
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHHHHHCCCEEEEE--EEEEECCCEEEEEEECCCCHHHHH
Q ss_conf 88279999904689887899999987-644420013126868698629206378--999821990899984787302467
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKY-YSEEKKEYGDIDSAPEEKLRGITIATA--HVSYETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~-~~~~~~~~~~~D~~~~E~~rGiTi~~~--~~~~~~~~~~i~iiD~PGH~~f~~ 86 (392)
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~~~f~~------------~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~~ 69 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL------------NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL 69 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCCCCC------------CCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHH
T ss_conf 508999999999988999999996499986------------66567546618999999899999999985565323556
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH----H-HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 79877400233145201234433210677888----8-631876023310023335612221101232100111014532
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILL----A-RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l----~-~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
T Consensus 70 l~~~~~~~ad~~ilVyDit~~---~SF~~i~~~~~~~~~~~~iP-~vlVgNK~DL~~~rqV---~~~e~~~~a~~~~~~- 141 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQR---YEVQPDEFCRKLGLP- 141 (169)
T ss_pred HHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCCC---CHHHHHHHHHHCCCC-
T ss_conf 658875469889999979987---89999999999700568981-8999886554203754---677699999983999-
Q ss_pred EEECCCCEEEEEE
Q ss_conf 2102331146764
Q gi|254780263|r 162 DTPIIRGSALCAL 174 (392)
Q Consensus 162 ~~pii~~sa~~g~ 174 (392)
T Consensus 142 --~~~e~SAktg~ 152 (169)
T cd01892 142 --PPLHFSSKLGD 152 (169)
T ss_pred --CCEEEEEECCC
T ss_conf --66699832798