HHsearch alignment for GI: 254780263 and conserved domain: cd01892

>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.66  E-value=1.4e-07  Score=66.12  Aligned_cols=143  Identities=14%  Similarity=0.039  Sum_probs=82.7

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHHHHHCCCEEEEE--EEEEECCCEEEEEEECCCCHHHHH
Q ss_conf             88279999904689887899999987-644420013126868698629206378--999821990899984787302467
Q gi|254780263|r   10 KESLGLSTIGHVDHGKTTLTAAITKY-YSEEKKEYGDIDSAPEEKLRGITIATA--HVSYETDKRFYSHIDCPGHADYVK   86 (392)
Q Consensus        10 k~~~ni~~iGhvd~GKSTL~~~L~~~-~~~~~~~~~~~D~~~~E~~rGiTi~~~--~~~~~~~~~~i~iiD~PGH~~f~~   86 (392)
T Consensus         2 r~vfk~~VlG~~~VGKTsLi~rf~~~~f~~------------~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~~   69 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL------------NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL   69 (169)
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHCCCCCC------------CCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHH
T ss_conf             508999999999988999999996499986------------66567546618999999899999999985565323556


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH----H-HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf             79877400233145201234433210677888----8-631876023310023335612221101232100111014532
Q gi|254780263|r   87 NMITGATQADGAILVCAAEDGPKPQTREHILL----A-RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD  161 (392)
Q Consensus        87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l----~-~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~  161 (392)
T Consensus        70 l~~~~~~~ad~~ilVyDit~~---~SF~~i~~~~~~~~~~~~iP-~vlVgNK~DL~~~rqV---~~~e~~~~a~~~~~~-  141 (169)
T cd01892          70 LNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQR---YEVQPDEFCRKLGLP-  141 (169)
T ss_pred             HHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCCC---CHHHHHHHHHHCCCC-
T ss_conf             658875469889999979987---89999999999700568981-8999886554203754---677699999983999-


Q ss_pred             EEECCCCEEEEEE
Q ss_conf             2102331146764
Q gi|254780263|r  162 DTPIIRGSALCAL  174 (392)
Q Consensus       162 ~~pii~~sa~~g~  174 (392)
T Consensus       142 --~~~e~SAktg~  152 (169)
T cd01892         142 --PPLHFSSKLGD  152 (169)
T ss_pred             --CCEEEEEECCC
T ss_conf             --66699832798