HHsearch alignment for GI: 254780263 and conserved domain: cd01895
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=3e-22 Score=156.97 Aligned_cols=159 Identities=28% Similarity=0.344 Sum_probs=118.1
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC---------H
Q ss_conf 2799999046898878999999876444200131268686986292063789998219908999847873---------0
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH---------A 82 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH---------~ 82 (392)
T Consensus 2 ~~~V~ivG~pN~GKSTL~N~l~g~~~~------~v-----s~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~ 70 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV------IV-----SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGI 70 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCE------EE-----CCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHH
T ss_conf 989999989999899999998389844------43-----4999915733289999999889998578842134421068
Q ss_pred HH--HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH-HHHHCCCCCCEEEEEEEE
Q ss_conf 24--677987740023314520123443321067788886318760233100233356122-211012321001110145
Q gi|254780263|r 83 DY--VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE-LLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 83 ~f--~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~-~~~~i~~~i~~~l~~~~~ 159 (392)
T Consensus 71 e~~~~~~~~~~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p-~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~-- 147 (174)
T cd01895 71 EKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL-- 147 (174)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECEECCCCCHHHHHHHHHHHHHHHCCC--
T ss_conf 899999999999842865899758989988999999999985998-69998567526764778999999999873416--
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 322102331146764114445652123320344310
Q gi|254780263|r 160 SDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 148 -~~~~ii~iSA~~g~----------Gi~~L~~~I~e 172 (174)
T cd01895 148 -DYAPIVFISALTGQ----------GVDKLFDAIDE 172 (174)
T ss_pred -CCCCEEEEECCCCC----------CHHHHHHHHHH
T ss_conf -89928999744798----------99999999998