HHsearch alignment for GI: 254780263 and conserved domain: cd03688
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.48 E-value=8.4e-08 Score=67.44 Aligned_cols=91 Identities=25% Similarity=0.379 Sum_probs=68.7
Q ss_pred CCCCCCEECCCCCCCCC--------CCCCEEEEEEECCCCCCCEEEEEECC---------CCCCCEEEECCCCCCCCCCC
Q ss_conf 00011000000013554--------45430148742453489679995068---------74321254121001211443
Q gi|254780263|r 204 LDAPFLMHIEGSCGIEG--------RGTVVTGCIKRGRIKAGSDVEIIGMG---------GKKLKVKCTDVEMFRKKLDE 266 (392)
Q Consensus 204 ~~~p~r~~I~~vf~i~g--------~G~Vv~GrV~sG~l~~Gd~i~i~p~~---------~~~~~~kv~si~~~~~~v~~ 266 (392)
T Consensus 2 ~~~~P~m~V~RSFDvNkPGt~~~~L~GGViGGSl~~G~lkvgDeIEIrPG~~~~~~~~~~~~Pi~t~I~sl~a~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCCEEEEEEEEECCCCCCCHHHCCEEEEEEEEEEEEEECCCEEEECCCEEEEECCEEEEEEEEEEEEEEEECCEEEEE
T ss_conf 98995499998864268999878853008989987879957999997489898739979999899999999929842428
Q ss_pred CCCCHHHHHHHC---CCCCCEEECHHEEECC
Q ss_conf 210013666411---2454322021177326
Q gi|254780263|r 267 AIAGDNVGLLLR---GVNRADVPRGRVVCAP 294 (392)
Q Consensus 267 a~aGd~v~l~Lk---gi~~~di~rGdvl~~~ 294 (392)
T Consensus 82 a~PGGLigvgT~LDPsltk~D~L~G~V~G~~ 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred ECCCCEEEECCCCCCHHCCCCCCEEEECCCC
T ss_conf 8378578971664813513654247761468