HHsearch alignment for GI: 254780263 and conserved domain: cd03690
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.36 E-value=2.7e-07 Score=64.32 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=62.4
Q ss_pred CCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCC
Q ss_conf 00110000000135544543014874245348967999506874321254121001----21144321001366641124
Q gi|254780263|r 205 DAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGV 280 (392)
Q Consensus 205 ~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi 280 (392)
T Consensus 1 e~~l~a~VFKi~~d~~~grl~yvRv~sG~l~~~~~v~~-~~~~---~eki~~l~~~~~~~~~~v~~~~AGdI~av~---- 72 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRV-NREE---KIKITELRVFNNGEVVTADTVTAGDIAILT---- 72 (85)
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEC-CCCC---EEEECEEEEEECCCEEECCEECCCCEEEEE----
T ss_conf 99734999988877999859999983409828988965-8996---040234899908995697789899999998----
Q ss_pred CCCEEECHHEEEC
Q ss_conf 5432202117732
Q gi|254780263|r 281 NRADVPRGRVVCA 293 (392)
Q Consensus 281 ~~~di~rGdvl~~ 293 (392)
T Consensus 73 gl~~~~~GDtlgd 85 (85)
T cd03690 73 GLKGLRVGDVLGD 85 (85)
T ss_pred CCCCCCCCCCCCC
T ss_conf 9998837772278