HHsearch alignment for GI: 254780263 and conserved domain: cd04103
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.07 E-value=7.7e-06 Score=55.29 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=76.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 79999904689887899999987-64442001312686869862920637899982199089998478730246779877
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKY-YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~-~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
T Consensus 1 ~KivllGd~~VGKTsl~~Rf~~~~F~~~~------~--p----t~~~-~~~~~~vdg~~~~l~i~DTaG~~~~~-----~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLE------S--P----EGGR-FKKEVLVDGQSHLLLIRDEGGAPDAQ-----F 62 (158)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCC------C--C----CCCE-EEEEEEECCEEEEEEEEECCCCCCHH-----H
T ss_conf 99999996998799999999809478744------4--6----6441-79999999999999999589983433-----3
Q ss_pred HHCCCCEEEEECCCCC-CCCCHHHHHH-HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 4002331452012344-3321067788-8863---187602331002333561222110123210011101453221023
Q gi|254780263|r 92 ATQADGAILVCAAEDG-PKPQTREHIL-LARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 92 ~~~~D~ailvVda~~G-~~~QT~eh~~-l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
T Consensus 63 ~~~ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ip-iilvGnK~dl~~~~~r~-V~~~e~~~~a~~~---~~~~f~ 137 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRV-IDDARARQLCADM---KRCSYY 137 (158)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCCCCCCCEE-CCHHHHHHHHHHC---CCCEEE
T ss_conf 214998999998898889999999999999855978996-89998770036577614-7999999999856---998899
Q ss_pred CCEEEEEEE
Q ss_conf 311467641
Q gi|254780263|r 167 RGSALCALQ 175 (392)
Q Consensus 167 ~~sa~~g~~ 175 (392)
T Consensus 138 EtSAk~~~N 146 (158)
T cd04103 138 ETCATYGLN 146 (158)
T ss_pred EEECCCCCC
T ss_conf 901799959