HHsearch alignment for GI: 254780263 and conserved domain: cd04133

>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.56  E-value=2.4e-07  Score=64.61  Aligned_cols=155  Identities=21%  Similarity=0.194  Sum_probs=84.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf             799999046898878999999876444200131268686986292063789---99821990899984787302467798
Q gi|254780263|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         2 iKivllGd~~VGKTsL~~rf~~~------------~F~~~~--~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~~~l~~   67 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSN------------KFPTDY--IPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRP   67 (176)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf             79999899997799999999659------------899986--7853589999999999899999997999765424689


Q ss_pred             HHHHCCCCEEEEECCCCC-CCCCHHHH-HHHHHH--CCCCCEEEEECCCCCCCCHHHH-H------HCCCCCCEEEEEEE
Q ss_conf             774002331452012344-33210677-888863--1876023310023335612221-1------01232100111014
Q gi|254780263|r   90 TGATQADGAILVCAAEDG-PKPQTREH-ILLARQ--IGISSIVVYMNKVDAVDDDELL-D------ISEYEIRDLLKEHK  158 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G-~~~QT~eh-~~l~~~--lgi~~iIv~iNKmD~v~~~~~~-~------~i~~~i~~~l~~~~  158 (392)
T Consensus        68 ~~y~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~p-iilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~  146 (176)
T cd04133          68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG  146 (176)
T ss_pred             HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf             8726787579999789878999999999999998684998-899998632021222333302467777999999999779


Q ss_pred             EEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf             5322102331146764114445652123320344310
Q gi|254780263|r  159 YSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT  195 (392)
Q Consensus       159 ~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~  195 (392)
T Consensus       147 ~---~~y~EtSAk~~~n----------V~e~F~~~~~  170 (176)
T cd04133         147 A---AAYIECSSKTQQN----------VKAVFDAAIK  170 (176)
T ss_pred             C---CEEEEECCCCCCC----------HHHHHHHHHH
T ss_conf             9---7899947898809----------8999999999