HHsearch alignment for GI: 254780263 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.56 E-value=2.4e-07 Score=64.61 Aligned_cols=155 Identities=21% Similarity=0.194 Sum_probs=84.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789---99821990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~------------~F~~~~--~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~~~l~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN------------KFPTDY--IPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf 79999899997799999999659------------899986--7853589999999999899999997999765424689
Q ss_pred HHHHCCCCEEEEECCCCC-CCCCHHHH-HHHHHH--CCCCCEEEEECCCCCCCCHHHH-H------HCCCCCCEEEEEEE
Q ss_conf 774002331452012344-33210677-888863--1876023310023335612221-1------01232100111014
Q gi|254780263|r 90 TGATQADGAILVCAAEDG-PKPQTREH-ILLARQ--IGISSIVVYMNKVDAVDDDELL-D------ISEYEIRDLLKEHK 158 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G-~~~QT~eh-~~l~~~--lgi~~iIv~iNKmD~v~~~~~~-~------~i~~~i~~~l~~~~ 158 (392)
T Consensus 68 ~~y~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~p-iilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~ 146 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG 146 (176)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 8726787579999789878999999999999998684998-899998632021222333302467777999999999779
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 5322102331146764114445652123320344310
Q gi|254780263|r 159 YSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 159 ~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 147 ~---~~y~EtSAk~~~n----------V~e~F~~~~~ 170 (176)
T cd04133 147 A---AAYIECSSKTQQN----------VKAVFDAAIK 170 (176)
T ss_pred C---CEEEEECCCCCCC----------HHHHHHHHHH
T ss_conf 9---7899947898809----------8999999999