HHsearch alignment for GI: 254780263 and conserved domain: cd04137

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.61  E-value=7.7e-08  Score=67.68  Aligned_cols=140  Identities=19%  Similarity=0.217  Sum_probs=79.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             99999046898878999999876444200131268686986292063789---998219908999847873024677987
Q gi|254780263|r   14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMIT   90 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi~   90 (392)
T Consensus         3 KIvlvGd~~VGKTsli~r~~~~~------------f~~~y~--~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~   68 (180)
T cd04137           3 KIAVLGSRSVGKSSLTVQFVEGH------------FVESYY--PTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQK   68 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC------------CCCCCC--CCCCCCCCEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf             89999989988999999997097------------899858--8124411379999999999999989987010066799


Q ss_pred             HHHCCCCEEEEECCCCCCCCCHHHHH--HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf             74002331452012344332106778--888631---8760233100233356122211012321001110145322102
Q gi|254780263|r   91 GATQADGAILVCAAEDGPKPQTREHI--LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI  165 (392)
Q Consensus        91 g~~~~D~ailvVda~~G~~~QT~eh~--~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi  165 (392)
T Consensus        69 ~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~p-iilVgNK~DL~~~r~---V~~~e~~~~a~~~~----~~f  140 (180)
T cd04137          69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQ---VSTEEGKELAESWG----AAF  140 (180)
T ss_pred             HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCHHHCC---CCHHHHHHHHHHCC----CEE
T ss_conf             9863557899974388788999999999999975888886-797765346244078---89999999999839----989


Q ss_pred             CCCEEEEEEE
Q ss_conf             3311467641
Q gi|254780263|r  166 IRGSALCALQ  175 (392)
Q Consensus       166 i~~sa~~g~~  175 (392)
T Consensus       141 ~EtSAk~g~n  150 (180)
T cd04137         141 LESSARENEN  150 (180)
T ss_pred             EEECCCCCCC
T ss_conf             9977688919