HHsearch alignment for GI: 254780263 and conserved domain: cd04139

>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.83  E-value=6.6e-09  Score=74.29  Aligned_cols=137  Identities=20%  Similarity=0.226  Sum_probs=83.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf             99999046898878999999876444200131268686986292063789---998219908999847873024677987
Q gi|254780263|r   14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMIT   90 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi~   90 (392)
T Consensus         2 KvvlvGd~~VGKTsli~r~~~~------------~F~~~y--~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~   67 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYD------------EFVEDY--EPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDN   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCCCCEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf             7999999998899999999719------------898774--88544168999999999999999989886624889999


Q ss_pred             HHHCCCCEEEEECCCCCCCCCHHHHH-----HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf             74002331452012344332106778-----888631---8760233100233356122211012321001110145322
Q gi|254780263|r   91 GATQADGAILVCAAEDGPKPQTREHI-----LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD  162 (392)
Q Consensus        91 g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~  162 (392)
T Consensus        68 ~~~~a~~~ilvydvt~~---~Sf~~~~~~~~~~~~~~~~~~~p-iilVgNK~DL~~~r~---v~~~e~~~~a~~~----~  136 (164)
T cd04139          68 YHRSGEGFLLVFSITDM---ESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQ---VSSEEAANLARQW----G  136 (164)
T ss_pred             HHHHCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCC-EEEEEEEHHHHHCCC---CCHHHHHHHHHHC----C
T ss_conf             88637688999977977---88999999999999860878863-698733032334177---8999999999983----9


Q ss_pred             EECCCCEEEEEEE
Q ss_conf             1023311467641
Q gi|254780263|r  163 TPIIRGSALCALQ  175 (392)
Q Consensus       163 ~pii~~sa~~g~~  175 (392)
T Consensus       137 ~~~~E~SAk~g~n  149 (164)
T cd04139         137 VPYVETSAKTRQN  149 (164)
T ss_pred             CEEEEECCCCCCC
T ss_conf             9899982687908