HHsearch alignment for GI: 254780263 and conserved domain: cd04139
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.83 E-value=6.6e-09 Score=74.29 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=83.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789---998219908999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
T Consensus 2 KvvlvGd~~VGKTsli~r~~~~------------~F~~~y--~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~ 67 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD------------EFVEDY--EPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDN 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCCCCEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 7999999998899999999719------------898774--88544168999999999999999989886624889999
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH-----HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 74002331452012344332106778-----888631---8760233100233356122211012321001110145322
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI-----LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
T Consensus 68 ~~~~a~~~ilvydvt~~---~Sf~~~~~~~~~~~~~~~~~~~p-iilVgNK~DL~~~r~---v~~~e~~~~a~~~----~ 136 (164)
T cd04139 68 YHRSGEGFLLVFSITDM---ESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQ---VSSEEAANLARQW----G 136 (164)
T ss_pred HHHHCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCC-EEEEEEEHHHHHCCC---CCHHHHHHHHHHC----C
T ss_conf 88637688999977977---88999999999999860878863-698733032334177---8999999999983----9
Q ss_pred EECCCCEEEEEEE
Q ss_conf 1023311467641
Q gi|254780263|r 163 TPIIRGSALCALQ 175 (392)
Q Consensus 163 ~pii~~sa~~g~~ 175 (392)
T Consensus 137 ~~~~E~SAk~g~n 149 (164)
T cd04139 137 VPYVETSAKTRQN 149 (164)
T ss_pred CEEEEECCCCCCC
T ss_conf 9899982687908